Citrus Sinensis ID: 031132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS
Secondary Structure (PSIPRED)
cEEEccEEEEEEEEccccccHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEccccEEEEEEEEccccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccHcccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mitidnkpiklQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDgvfdvsnesygikvgyggipgpsggrdgsssqaggccs
Flexible Loop (DISEMBL)
mitidnkpiklqiwdtagQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGipgpsggrdgsssqaggccs
Low Complexity Region (SEG)
MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVgyggipgpsggrdgsssQAGGCCS
Disordered region (IsUnstruct)
*******PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST***EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGI*******************
Disordered Region (DISOPRED)
MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK************************************AGGCCS
Disordered Region (DISEMBL)
MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR**********AKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGP****************
Disordered Region (DISPRO)
MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ***************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
P92963	211	Ras-related protein RABB1	yes	no	0.993	0.777	0.987	2e-93
Q38922	211	Ras-related protein RABB1	no	no	0.993	0.777	0.835	1e-79
P49104	210	Ras-related protein Rab-2	N/A	no	0.884	0.695	0.945	3e-78
P49103	209	Ras-related protein Rab-2	N/A	no	0.866	0.684	0.951	2e-77
P36863	213	GTP-binding protein yptV4	N/A	no	0.993	0.769	0.820	1e-75
Q39570	213	GTP-binding protein YPTC4	N/A	no	0.993	0.769	0.820	3e-75
O23561	205	Ras-related protein RABB1	no	no	0.945	0.760	0.786	2e-70
Q05975	212	Ras-related protein Rab-2	N/A	no	0.860	0.669	0.809	9e-64
P53994	212	Ras-related protein Rab-2	yes	no	0.993	0.773	0.722	9e-64
P36409	207	Ras-related protein Rab-2	yes	no	0.963	0.768	0.698	1e-63

>sp|P92963|RAB1C_ARATH Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1

 Score =  340 bits (872), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/164 (98%), Positives = 163/164 (99%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGS+SQ GGCC
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38922|RAB1B_ARATH Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1

 Score =  295 bits (754), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/164 (83%), Positives = 151/164 (92%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           M+T+D +PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MVTVDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HAN NM+IMLIGNKCDLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA 
Sbjct: 107 HANPNMSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAK 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
           I + IQDGVFDVSNES GIK+GYG   G +GGRDG+ SQ GGCC
Sbjct: 167 ILQNIQDGVFDVSNESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1

 Score =  290 bits (742), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/147 (94%), Positives = 142/147 (96%), Gaps = 1/147 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIML+GNKCDL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTA  
Sbjct: 107 HANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGA 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIP 147
           IYKKIQDGVFDVSNESYGIKVGY  IP
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGY-AIP 192

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1

 Score =  287 bits (735), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/143 (95%), Positives = 139/143 (97%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MI IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIML+GNKCDL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTA  
Sbjct: 107 HANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGA 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGY 143
           IYKKIQDGVFDVSNESYGIKVGY
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGY 189

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1

 Score =  281 bits (720), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/167 (82%), Positives = 145/167 (86%), Gaps = 3/167 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MI ID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HAN NMTIMLIGNKCDL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAFI TA  
Sbjct: 107 HANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKE 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYG-GIPGPSGGR--DGSSSQAGGCC 164
           IYKKIQDGVFDVSNESYGIKVGYG G  GP   +  +G + ++  CC
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1

 Score =  280 bits (715), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/167 (82%), Positives = 146/167 (87%), Gaps = 3/167 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MI ID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HAN NMTIMLIGNKCDL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAFI TA  
Sbjct: 107 HANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKE 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGY-GGIPGPSGGR--DGSSSQAGGCC 164
           IYKKIQDGVFDVSNESYGIKVGY GG  GP   +  +G ++++  CC
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|O23561|RAB1A_ARATH Ras-related protein RABB1a OS=Arabidopsis thaliana GN=RABB1A PE=2 SV=1

 Score =  264 bits (674), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 139/164 (84%), Gaps = 8/164 (4%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           ITIDNKPIKLQIWDTAGQESFRS+TRSYYRG AG LLVYDITRRETFNHLASWLE+ARQH
Sbjct: 48  ITIDNKPIKLQIWDTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQH 107

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ NMT MLIGNKCDL  +R VSTEEGEQFA+EHGLIFMEASAKTA NVEEAF++TAATI
Sbjct: 108 ASENMTTMLIGNKCDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATI 167

Query: 122 YKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQA-GGCC 164
           YK+IQDGV D +NE        G  PGP GG+D SSSQ   GCC
Sbjct: 168 YKRIQDGVVDEANEP-------GITPGPFGGKDASSSQQRRGCC 204

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1

 Score =  242 bits (617), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 125/142 (88%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct: 47  MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct: 107 HSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKE 166

Query: 121 IYKKIQDGVFDVSNESYGIKVG 142
           IY+KIQDGVFD++NE+ GIK+G
Sbjct: 167 IYQKIQDGVFDINNEANGIKIG 188

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Lymnaea stagnalis (taxid: 6523)

>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1

 Score =  242 bits (617), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 132/166 (79%), Gaps = 2/166 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct: 47  MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct: 107 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 166

Query: 121 IYKKIQDGVFDVSNESYGIKVG--YGGIPGPSGGRDGSSSQAGGCC 164
           IY+KIQ+GVFD++NE+ GIK+G  +       G   G     GGCC
Sbjct: 167 IYEKIQEGVFDINNEANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Mus musculus (taxid: 10090)

>sp|P36409|RAB2A_DICDI Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2

 Score =  241 bits (616), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/166 (69%), Positives = 137/166 (82%), Gaps = 7/166 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNK IKLQIWDTAGQESFRSITRSYYRG+AGALLVYDITRR+TFNHL  WL+DAR 
Sbjct: 46  MITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARS 105

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +AN+NMTI+LIGNK D+  +RAVS EEG QFA E+GLIF+E SAKTA NVEEAF+ TA+ 
Sbjct: 106 YANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASK 165

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQ--AGGCC 164
           IY+KIQ G FD++NES+GIK+G      P+  +DG+  +   GGCC
Sbjct: 166 IYEKIQKGDFDINNESFGIKLG-----APTSKQDGTDQKPAGGGCC 206

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
224089509	211	predicted protein [Populus trichocarpa]	1.0	0.781	0.987	4e-92
449443494	211	PREDICTED: ras-related protein RABB1c-li	1.0	0.781	0.975	1e-91
15235981	211	RAB GTPase homolog B1C [Arabidopsis thal	0.993	0.777	0.987	1e-91
356555789	211	PREDICTED: ras-related protein RABB1c-li	1.0	0.781	0.981	2e-91
388495178	211	unknown [Lotus japonicus]	1.0	0.781	0.975	3e-91
225447452	211	PREDICTED: ras-related protein RABB1c [V	1.0	0.781	0.975	9e-91
255637328	211	unknown [Glycine max]	1.0	0.781	0.975	1e-90
351726934	211	guanine nucleotide regulatory protein [G	1.0	0.781	0.975	1e-90
224124750	211	predicted protein [Populus trichocarpa]	1.0	0.781	0.975	2e-90
16755592	211	small GTPase Rab2 [Nicotiana tabacum]	1.0	0.781	0.963	3e-90

>gi|224089509|ref|XP_002308739.1| predicted protein [Populus trichocarpa] gi|118487262|gb|ABK95459.1| unknown [Populus trichocarpa] gi|222854715|gb|EEE92262.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (876), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 163/165 (98%), Positives = 164/165 (99%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG S+QAGGCCS
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGGSAQAGGCCS 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443494|ref|XP_004139512.1| PREDICTED: ras-related protein RABB1c-like [Cucumis sativus]

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 165/165 (100%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG+++Q+GGCCS
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGATAQSGGCCS 211

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235981|ref|NP_193450.1| RAB GTPase homolog B1C [Arabidopsis thaliana] gi|297800394|ref|XP_002868081.1| hypothetical protein ARALYDRAFT_493160 [Arabidopsis lyrata subsp. lyrata] gi|75279776|sp|P92963.1|RAB1C_ARATH RecName: Full=Ras-related protein RABB1c; Short=AtRABB1c; AltName: Full=Ras-related protein Rab2A; Short=AtRab2A gi|1765896|emb|CAA70498.1| Rab2-like protein [Arabidopsis thaliana] gi|5281023|emb|CAB45962.1| GTP-binding RAB2A like protein [Arabidopsis thaliana] gi|7268468|emb|CAB80988.1| GTP-binding RAB2A like protein [Arabidopsis thaliana] gi|27311815|gb|AAO00873.1| GTP-binding RAB2A like protein [Arabidopsis thaliana] gi|30023652|gb|AAP13359.1| At4g17170 [Arabidopsis thaliana] gi|297313917|gb|EFH44340.1| hypothetical protein ARALYDRAFT_493160 [Arabidopsis lyrata subsp. lyrata] gi|332658457|gb|AEE83857.1| RAB GTPase homolog B1C [Arabidopsis thaliana]

 Score =  340 bits (872), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 162/164 (98%), Positives = 163/164 (99%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGS+SQ GGCC
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555789|ref|XP_003546212.1| PREDICTED: ras-related protein RABB1c-like [Glycine max] gi|1370176|emb|CAA98165.1| RAB2A [Lotus japonicus]

 Score =  339 bits (870), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 162/165 (98%), Positives = 163/165 (98%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG S+ AGGCCS
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495178|gb|AFK35655.1| unknown [Lotus japonicus]

 Score =  339 bits (869), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 163/165 (98%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKP+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG S+ AGGCCS
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 211

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447452|ref|XP_002263290.1| PREDICTED: ras-related protein RABB1c [Vitis vinifera] gi|296085073|emb|CBI28488.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (865), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 163/165 (98%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAFI TA+T
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFISTAST 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQ+GVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS
Sbjct: 167 IYKKIQEGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637328|gb|ACU18994.1| unknown [Glycine max]

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 162/165 (98%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG  + AGGCCS
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPFASAGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726934|ref|NP_001238167.1| guanine nucleotide regulatory protein [Glycine max] gi|1208537|gb|AAA90955.1| guanine nucleotide regulatory protein [Glycine max]

 Score =  337 bits (863), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 162/165 (98%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE ARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEHARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG S+ AGGCCS
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124750|ref|XP_002329939.1| predicted protein [Populus trichocarpa] gi|118484431|gb|ABK94092.1| unknown [Populus trichocarpa] gi|222871961|gb|EEF09092.1| predicted protein [Populus trichocarpa]

 Score =  336 bits (861), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 163/165 (98%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNK DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct: 107 HANANMTIMLIGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQDGVFDVSNESYGIKVGYGGIPG SGGRDG+S+QAGGCCS
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGSSGGRDGASAQAGGCCS 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16755592|gb|AAL28022.1| small GTPase Rab2 [Nicotiana tabacum]

 Score =  335 bits (860), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 159/165 (96%), Positives = 164/165 (99%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE+GLIFMEASAKTAQNVEEAFI+TA+T
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIRTAST 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
           IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG++SQ GGCCS
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGAASQGGGCCS 211

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2130624	211	RABB1C "AT4G17170" [Arabidopsi	0.993	0.777	0.890	2.2e-73
TAIR|locus:2125384	211	GB2 "GTP-binding 2" [Arabidops	0.993	0.777	0.774	1.5e-65
TAIR|locus:2130614	205	RABB1a "RAB GTPase homolog B1A	0.812	0.653	0.858	7.3e-59
UNIPROTKB|F1N8Z3	197	RAB2A "Ras-related protein Rab	0.993	0.832	0.710	1.9e-58
UNIPROTKB|Q90965	212	RAB2A "Ras-related protein Rab	0.993	0.773	0.710	1.9e-58
UNIPROTKB|G1K288	232	RAB2A "Ras-related protein Rab	0.993	0.706	0.710	1.9e-58
UNIPROTKB|P61105	212	RAB2A "Ras-related protein Rab	0.993	0.773	0.710	1.9e-58
UNIPROTKB|P61019	212	RAB2A "Ras-related protein Rab	0.993	0.773	0.710	1.9e-58
UNIPROTKB|Q4R4X6	212	RAB2A "Ras-related protein Rab	0.993	0.773	0.710	1.9e-58
UNIPROTKB|Q5R6B6	212	RAB2A "Ras-related protein Rab	0.993	0.773	0.710	1.9e-58

TAIR|locus:2130624 RABB1C "AT4G17170" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 146/164 (89%), Positives = 146/164 (89%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct:    47 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT
Sbjct:   107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 166

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQAGGCC 164
             IYKKIQDGVFDVSNESYGIKV                 Q GGCC
Sbjct:   167 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

TAIR|locus:2125384 GB2 "GTP-binding 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 127/164 (77%), Positives = 139/164 (84%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             M+T+D +PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct:    47 MVTVDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             HAN NM+IMLIGNKCDLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA 
Sbjct:   107 HANPNMSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAK 166

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQAGGCC 164
             I + IQDGVFDVSNES GIK+                 Q GGCC
Sbjct:   167 ILQNIQDGVFDVSNESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2130614 RABB1a "RAB GTPase homolog B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 115/134 (85%), Positives = 124/134 (92%)

Query:     2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
             ITIDNKPIKLQIWDTAGQESFRS+TRSYYRG AG LLVYDITRRETFNHLASWLE+ARQH
Sbjct:    48 ITIDNKPIKLQIWDTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQH 107

Query:    62 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
             A+ NMT MLIGNKCDL  +R VSTEEGEQFA+EHGLIFMEASAKTA NVEEAF++TAATI
Sbjct:   108 ASENMTTMLIGNKCDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATI 167

Query:   122 YKKIQDGVFDVSNE 135
             YK+IQDGV D +NE
Sbjct:   168 YKRIQDGVVDEANE 181

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1N8Z3 RAB2A "Ras-related protein Rab-2A" [Gallus gallus (taxid:9031)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/166 (71%), Positives = 129/166 (77%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct:    32 MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 91

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct:    92 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 151

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 164
             IY+KIQ+GVFD++NE+ GIK+                 Q   GGCC
Sbjct:   152 IYEKIQEGVFDINNEANGIKIGPQHAATNATLAGNQGGQQAGGGCC 197

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

UNIPROTKB|Q90965 RAB2A "Ras-related protein Rab-2A" [Gallus gallus (taxid:9031)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/166 (71%), Positives = 129/166 (77%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct:    47 MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 106

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct:   107 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 166

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 164
             IY+KIQ+GVFD++NE+ GIK+                 Q   GGCC
Sbjct:   167 IYEKIQEGVFDINNEANGIKIGPQHAATNATLAGNQGGQQAGGGCC 212

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

UNIPROTKB|G1K288 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/166 (71%), Positives = 129/166 (77%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct:    67 MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 126

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct:   127 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 186

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 164
             IY+KIQ+GVFD++NE+ GIK+                 Q   GGCC
Sbjct:   187 IYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 232

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61105 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/166 (71%), Positives = 129/166 (77%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct:    47 MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 106

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct:   107 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 166

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 164
             IY+KIQ+GVFD++NE+ GIK+                 Q   GGCC
Sbjct:   167 IYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61019 RAB2A "Ras-related protein Rab-2A" [Homo sapiens (taxid:9606)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/166 (71%), Positives = 129/166 (77%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct:    47 MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 106

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct:   107 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 166

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 164
             IY+KIQ+GVFD++NE+ GIK+                 Q   GGCC
Sbjct:   167 IYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|Q4R4X6 RAB2A "Ras-related protein Rab-2A" [Macaca fascicularis (taxid:9541)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/166 (71%), Positives = 129/166 (77%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct:    47 MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 106

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct:   107 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 166

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 164
             IY+KIQ+GVFD++NE+ GIK+                 Q   GGCC
Sbjct:   167 IYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|Q5R6B6 RAB2A "Ras-related protein Rab-2A" [Pongo abelii (taxid:9601)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/166 (71%), Positives = 129/166 (77%)

Query:     1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
             MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct:    47 MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 106

Query:    61 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct:   107 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 166

Query:   121 IYKKIQDGVFDVSNESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 164
             IY+KIQ+GVFD++NE+ GIK+                 Q   GGCC
Sbjct:   167 IYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05975	RAB2_LYMST	No assigned EC number	0.8098	0.8606	0.6698	N/A	no
P61105	RAB2A_CANFA	No assigned EC number	0.8028	0.8606	0.6698	yes	no
P49104	RAB2B_MAIZE	No assigned EC number	0.9455	0.8848	0.6952	N/A	no
P49103	RAB2A_MAIZE	No assigned EC number	0.9510	0.8666	0.6842	N/A	no
P92963	RAB1C_ARATH	No assigned EC number	0.9878	0.9939	0.7772	yes	no
Q39570	YPTC4_CHLRE	No assigned EC number	0.8203	0.9939	0.7699	N/A	no
P53994	RAB2A_MOUSE	No assigned EC number	0.7228	0.9939	0.7735	yes	no
P05712	RAB2A_RAT	No assigned EC number	0.8028	0.8606	0.6698	yes	no
Q01971	RAB2A_RABIT	No assigned EC number	0.8028	0.8606	0.6698	yes	no
Q90965	RAB2A_CHICK	No assigned EC number	0.8028	0.8606	0.6698	yes	no
Q4R4X6	RAB2A_MACFA	No assigned EC number	0.8028	0.8606	0.6698	N/A	no
Q5R6B6	RAB2A_PONAB	No assigned EC number	0.8028	0.8606	0.6698	yes	no
P36863	YPTV4_VOLCA	No assigned EC number	0.8203	0.9939	0.7699	N/A	no
P36409	RAB2A_DICDI	No assigned EC number	0.6987	0.9636	0.7681	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VI0020 SubName- Full=Putative uncharacterized protein; (211 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-121
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-92
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	5e-77
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	8e-71
pfam00071	162	pfam00071, Ras, Ras family	6e-70
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-67
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-63
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	6e-61
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-59
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-58
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-57
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-51
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-50
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-50
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-49
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-48
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-44
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-43
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-41
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-40
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-39
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-39
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-38
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-38
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-36
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-36
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-36
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	9e-34
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-33
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-33
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	8e-33
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-32
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-30
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-30
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-30
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	4e-29
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-29
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	7e-29
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-27
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	6e-27
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-26
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-26
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-26
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-25
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	9e-25
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-24
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-24
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	6e-24
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-23
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-23
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-23
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-22
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-21
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-21
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	8e-21
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-21
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-19
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-18
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-16
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-16
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	6e-16
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-15
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	7e-15
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-14
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-14
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	8e-14
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-13
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	9e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-12
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-11
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	1e-11
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-11
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-10
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-09
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	7e-09
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	9e-09
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	9e-09
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-08
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-08
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	5e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	6e-08
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	5e-07
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	7e-07
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-06
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-06
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	4e-06
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	6e-06
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	8e-06
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	8e-06
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-05
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-05
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	7e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	4e-04
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	5e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	8e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.001
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	0.003
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	0.003

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  340 bits (874), Expect = e-121
 Identities = 159/164 (96%), Positives = 160/164 (97%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ
Sbjct: 47  MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 
Sbjct: 107 HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAK 166

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
           IYKKIQDGVFDVSNESYGIKVGYG IPG SGGRDG+SSQ GGCC
Sbjct: 167 IYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  264 bits (676), Expect = 6e-92
 Identities = 107/124 (86%), Positives = 110/124 (88%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQ
Sbjct: 45  MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 104

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H+N+NMTIMLIGNKCDL  RR VS EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct: 105 HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 164

Query: 121 IYKK 124
           IY K
Sbjct: 165 IYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  226 bits (578), Expect = 5e-77
 Identities = 78/124 (62%), Positives = 94/124 (75%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K +KLQIWDTAGQE FRSIT SYYRGA GALLVYDIT RE+F +L +WL++ R+
Sbjct: 41  TIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELRE 100

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A+ N+ IML+GNK DL  +R VS EE E FA+EHGL F E SAKT  NVEEAF + A  
Sbjct: 101 YASPNVVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160

Query: 121 IYKK 124
           I K+
Sbjct: 161 ILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  210 bits (537), Expect = 8e-71
 Identities = 72/118 (61%), Positives = 90/118 (76%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K +KLQIWDTAGQE FRSIT SYYRGA GA+LVYD+T RE+F +L  WL + ++
Sbjct: 41  TIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKE 100

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           +A  N+ I+L+GNK DL   R VSTEE +QFAKE+GL+F E SAKT +NV+EAF   A
Sbjct: 101 YAPPNIPIILVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  208 bits (531), Expect = 6e-70
 Identities = 74/122 (60%), Positives = 91/122 (74%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K +KLQIWDTAGQE FR++   YYRGA G LLVYDIT R++F ++  WLE+  +H
Sbjct: 41  IEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRH 100

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I+L+GNKCDL  +R VSTEEGE  AKE GL FME SAKT +NVEEAF + A  I
Sbjct: 101 ADENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160

Query: 122 YK 123
            K
Sbjct: 161 LK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  201 bits (514), Expect = 3e-67
 Identities = 71/121 (58%), Positives = 90/121 (74%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I ID K IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT++ TF ++  WL++ R H
Sbjct: 45  IQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDH 104

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ IML+GNK DL H RAV TEE + FA+++GL F+E SA    NVEEAF +    I
Sbjct: 105 ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Query: 122 Y 122
           Y
Sbjct: 165 Y 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  191 bits (487), Expect = 3e-63
 Identities = 79/124 (63%), Positives = 99/124 (79%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I ++ + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR 
Sbjct: 43  IIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 102

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             N N  I LIGNK DL  +R V+ EE +QFA E+GL+F+E SAKT +NVE+AF++TA  
Sbjct: 103 LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKK 162

Query: 121 IYKK 124
           IY+ 
Sbjct: 163 IYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  185 bits (472), Expect = 6e-61
 Identities = 68/123 (55%), Positives = 90/123 (73%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G +LVYDIT  ++F ++ +W+ +  +H
Sbjct: 45  IELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEH 104

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ ++  ML+GNKCD+  +R VS EEGE  A+E+G+ F+E SAK   NVEEAF+  A  I
Sbjct: 105 ASEDVERMLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Query: 122 YKK 124
            KK
Sbjct: 165 LKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  180 bits (460), Expect = 4e-59
 Identities = 59/121 (48%), Positives = 84/121 (69%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE +RS+   YYRGAA A++VYDIT  E+F    SW+++ ++H
Sbjct: 43  VNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEH 102

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
              N+ I L GNK DL  +R VSTEE +++A E+GL+FME SAKT +NV E F + A  +
Sbjct: 103 GPPNIVIALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

Query: 122 Y 122
            
Sbjct: 163 P 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  177 bits (450), Expect = 9e-58
 Identities = 73/121 (60%), Positives = 94/121 (77%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           ++ +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RE+FN L +WL DAR 
Sbjct: 41  VVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDART 100

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ ++ I+L+GNK DL   R V+  E  +FA+E+GL+F+E SA T +NVEEAF+K A +
Sbjct: 101 LASPDIVIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160

Query: 121 I 121
           I
Sbjct: 161 I 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  176 bits (448), Expect = 3e-57
 Identities = 64/123 (52%), Positives = 90/123 (73%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 44  IELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY 103

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNKCDL  ++ V   E ++FA E G+ F+E SAK A NVEEAF+  A  I
Sbjct: 104 ASENVNKLLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Query: 122 YKK 124
            K+
Sbjct: 164 KKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  162 bits (412), Expect = 2e-51
 Identities = 75/168 (44%), Positives = 101/168 (60%), Gaps = 4/168 (2%)

Query: 1   MITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR 59
           +I I     IKLQ+WDTAGQE FRSITRSYYR + G LLV+DIT RE+F H+  WLE+AR
Sbjct: 43  LIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEAR 102

Query: 60  QHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
            H   +    +L+G+KCDL  +R V+ EE E+ AK+ G+ ++E SA+T  NVEEAF    
Sbjct: 103 SHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLT 162

Query: 119 ATIYKKIQDGVFDVSNESYGIKVGY--GGIPGPSGGRDGSSSQAGGCC 164
             IY++I+ G     +   G+K G+  G            +S    CC
Sbjct: 163 QEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  159 bits (403), Expect = 1e-50
 Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 1/118 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I  K +KLQIWDTAGQE FR+IT+SYYR A GA++ YDITRR +F  +  W+E+  ++
Sbjct: 45  LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY 104

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIF-MEASAKTAQNVEEAFIKTA 118
             +N+ ++LIGNKCDL  +R V  EE    A+ +G++  +E SAK + NVEEAF+  A
Sbjct: 105 GASNVVLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  157 bits (400), Expect = 5e-50
 Identities = 56/120 (46%), Positives = 86/120 (71%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+K ++LQ+WDTAGQE FRS+  SY R ++ A++VYDIT R++F++   W++D R  
Sbjct: 42  MYVDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDE 101

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
              ++ I+L+GNK DL+ +R VSTEEGE+ AKE+  +F+E SAK   NV++ F K A  +
Sbjct: 102 RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  156 bits (397), Expect = 1e-49
 Identities = 60/121 (49%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           +T+D K +KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF++L +WL +   +
Sbjct: 42  VTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTY 101

Query: 62  A-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           + N +   ML+GNK D  + R V+ EEG++FA++H ++F+E SAKT   V++AF +    
Sbjct: 102 STNPDAVKMLVGNKIDKEN-REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEK 160

Query: 121 I 121
           I
Sbjct: 161 I 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  155 bits (392), Expect = 3e-48
 Identities = 74/167 (44%), Positives = 102/167 (61%), Gaps = 8/167 (4%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ++ K +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R H
Sbjct: 54  LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH 113

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ IM+ GNK DL H R+V+ E+G+  A++ GL F+E SA  A NVE+AF      I
Sbjct: 114 ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173

Query: 122 YKKIQDGVFDVSNESYGIKVGYGGIPGPSGG---RDGSSSQAGGCCS 165
           Y  I          +        G+PG        D S +   GCCS
Sbjct: 174 YHIISKKALAAQEAA-----ANSGLPGQGTTINVADTSGNNKRGCCS 215

Length = 216

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  143 bits (363), Expect = 4e-44
 Identities = 59/129 (45%), Positives = 91/129 (70%), Gaps = 1/129 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           ++T+D   +KLQIWDTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  +
Sbjct: 42  VVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILE 101

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A +++ IML+GNK D++  R V  E+GE+ AKE+G+ FME SAKT  NVE AF   A  
Sbjct: 102 YAQSDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKE 161

Query: 121 I-YKKIQDG 128
           + ++ ++  
Sbjct: 162 LKHRSVEQP 170

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  139 bits (352), Expect = 8e-43
 Identities = 50/120 (41%), Positives = 75/120 (62%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I  K I L IWDTAGQE + ++   YYR A GA+LVYDIT  ++F  +  W+++ +Q 
Sbjct: 42  VNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQM 101

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
              N++++++GNK DL  +R VS  E E++AK  G    E SAKT + +EE F+  A  +
Sbjct: 102 RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  136 bits (344), Expect = 1e-41
 Identities = 58/118 (49%), Positives = 77/118 (65%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I  + IKLQIWDTAGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+
Sbjct: 49  VEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 108

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
           AN  +  +L+GNK DLA RR VS +  E+F+    + ++E SAK + NVE+ F+  A 
Sbjct: 109 ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLAC 166

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  134 bits (339), Expect = 1e-40
 Identities = 52/122 (42%), Positives = 79/122 (64%), Gaps = 5/122 (4%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           +T+D++ + LQIWDTAGQE F+S+  ++YRGA   +LVYD+T  ++F  L SW ++    
Sbjct: 42  VTVDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQ 101

Query: 62  AN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIK 116
           A+     N   +++GNK DL  +R VST++ +Q+ K  G I + E SAK A NV++AF  
Sbjct: 102 ASPRDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFET 161

Query: 117 TA 118
            A
Sbjct: 162 IA 163

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  130 bits (329), Expect = 3e-39
 Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           I +D +   L I DTAGQE F ++   Y R   G +LVY IT RE+F  + +  E   R 
Sbjct: 40  IVVDGETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV 99

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
               ++ I+L+GNKCDL + R VSTEEGE  A+E G  F+E SAKT  N++E F 
Sbjct: 100 KDKEDVPIVLVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFN 154

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  131 bits (331), Expect = 4e-39
 Identities = 63/122 (51%), Positives = 83/122 (68%), Gaps = 2/122 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQ 60
           +T+  K +KL IWDTAGQE FR++T SYYR A G +LVYD+TRRETF +L+  W ++   
Sbjct: 55  LTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL 114

Query: 61  HA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
           ++ N +   ML+GNK D    R VS EEG   AKEHG +F+E SAKT +NVE+ F + A 
Sbjct: 115 YSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELAL 174

Query: 120 TI 121
            I
Sbjct: 175 KI 176

Length = 211

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  129 bits (326), Expect = 2e-38
 Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 1/125 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +  K I+LQIWDTAGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++
Sbjct: 42  VELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY 101

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAAT 120
           A+ +  ++L+GNK D    R ++ ++GE+FA++  G+ F EASAK   NV+E F+K    
Sbjct: 102 ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 161

Query: 121 IYKKI 125
           I KK+
Sbjct: 162 ILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  126 bits (319), Expect = 6e-38
 Identities = 57/119 (47%), Positives = 76/119 (63%)

Query: 6   NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 65
           +K IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N
Sbjct: 47  DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN 106

Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124
             ++L+GNKCD+   R VS E G Q A + G  F EASAK   NV++ F +    I  K
Sbjct: 107 AQVILVGNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICDK 165

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  123 bits (310), Expect = 2e-36
 Identities = 53/114 (46%), Positives = 71/114 (62%), Gaps = 1/114 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           I ID +   L I DTAGQE F ++   Y R   G LLVY IT R++F  +A + E   R 
Sbjct: 43  IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRV 102

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
               ++ I+L+GNKCDL + R VSTEEG++ A++ G  F+E SAK   NV+EAF
Sbjct: 103 KDRDDVPIVLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  122 bits (309), Expect = 3e-36
 Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           I ID +   L I DTAGQE F ++   Y R   G LLVY IT R++F  +  + E   R 
Sbjct: 41  IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRV 100

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
               ++ I+L+GNKCDL   R VSTEEG++ A++ G  F+E SAK   NV+EAF
Sbjct: 101 KDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  122 bits (307), Expect = 5e-36
 Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 5/122 (4%)

Query: 2   ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           + ID + IK+Q+WDTAGQE FR S+ + YYR     + VYD+T   +F+ L SW+E+  Q
Sbjct: 44  VEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQ 103

Query: 61  HANANMTI-MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK---TAQNVEEAFIK 116
           H+  N    +L+GNKCDL  +  V T+  ++FA  H +   E SAK      +VE  F+ 
Sbjct: 104 HSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMT 163

Query: 117 TA 118
            A
Sbjct: 164 LA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  117 bits (295), Expect = 9e-34
 Identities = 59/170 (34%), Positives = 85/170 (50%), Gaps = 17/170 (10%)

Query: 2   ITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED--A 58
           I  D N  ++LQ+WD AGQE F  +TR YY+GA GA++V+D+TR  TF  +  W  D  +
Sbjct: 42  IEWDPNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDS 101

Query: 59  RQHANANMTI--MLIGNKCDLAHRR-AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 114
           +        I  +L+ NKCDL   R A   E+ +QF KE+G I + E SAK   N+EEA 
Sbjct: 102 KVTLPNGEPIPALLLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAM 161

Query: 115 IKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
                 I K  +       +E   I +              ++S++  CC
Sbjct: 162 RFLVKNILKNDKGLQSPEPDEDNVIDLKQE----------TTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  116 bits (292), Expect = 1e-33
 Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMT 67
           + LQ+WDTAGQE FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA   N  
Sbjct: 63  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPD 122

Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 113
           I+LIGNK DL  +R VS  +  + A ++G+ + E SA T QNVE+A
Sbjct: 123 IVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  115 bits (290), Expect = 5e-33
 Identities = 51/113 (45%), Positives = 74/113 (65%), Gaps = 1/113 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ + +KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL++  Q+
Sbjct: 48  VEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN 107

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            +    + L+GNK D   R+ V TE+  +FA + G+   E SAK   NVEE F
Sbjct: 108 CDDVCKV-LVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  114 bits (286), Expect = 8e-33
 Identities = 53/118 (44%), Positives = 76/118 (64%)

Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           +D  P++LQ+WDTAGQE FRS+  SY R +A A++VYDIT R++F +   W++D      
Sbjct: 24  LDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG 83

Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
            ++ I L+GNK DL   R V+ EEG Q A+E+  +F E SAK   N++  F K AA +
Sbjct: 84  KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  111 bits (279), Expect = 6e-32
 Identities = 49/117 (41%), Positives = 76/117 (64%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D   +++QIWDTAGQE +++IT+ YYR A G  LVYDI+   ++ H+  W+ D  ++
Sbjct: 42  IEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY 101

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           A   +  +LIGNK D   +R V  E+G + AKE+G+ F E SA T +N++E+F +  
Sbjct: 102 APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  108 bits (272), Expect = 1e-30
 Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 5/118 (4%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           +++ NK +++  +D +G   +  +   +Y+   G LLVYD+T R++F  L SWL++ +Q 
Sbjct: 42  VSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQE 101

Query: 62  ANA-----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
                   N+ +++  NK DL   RAVS +EG  +A+  G  + E SA T + V E F
Sbjct: 102 GGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  108 bits (271), Expect = 2e-30
 Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + ++L I DTAGQE + +I  +Y+R   G LLV+ IT  E+F  LA + E   R 
Sbjct: 41  VVLDGEEVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRV 100

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + N+ ++L+GNKCDL  +R VS EE    A++ G+ ++E SAKT  NV++ F      
Sbjct: 101 KEDDNVPLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVRE 160

Query: 121 IYK 123
           I +
Sbjct: 161 IRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  107 bits (269), Expect = 6e-30
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)

Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ--- 60
           +D +P  L++ DTAGQE + ++   + R   G +LVY IT R TF  +  + E  ++   
Sbjct: 42  VDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD 101

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            + A++ IM++GNKCD  + R VSTEEG   A+  G  F+EASAKT  NVE AF      
Sbjct: 102 ESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161

Query: 121 IYKKIQDGVFDVSNESYG 138
           + ++ Q G       +  
Sbjct: 162 LRQQRQGGQGPKGGPTKK 179

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  104 bits (261), Expect = 4e-29
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
            ID +  +L I DTAGQE F ++   Y R   G LLV+ +T R +F  +  +     +  
Sbjct: 44  EIDGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK 103

Query: 63  NAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           + +   ++L+GNK DL H+R VS EEG++ A++  + ++E SAK   NV++AF
Sbjct: 104 DRDEFPMILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  105 bits (262), Expect = 5e-29
 Identities = 48/117 (41%), Positives = 77/117 (65%), Gaps = 1/117 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D + +KLQ+WDT+GQ  F +I RSY RGA G +LVYDIT R +F+ +  W+++  +H
Sbjct: 48  ILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH 107

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           A   +  +L+GN+  LA +R V+TE+ + +A+ +G+ F E S     N+ E+F + A
Sbjct: 108 A-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  104 bits (260), Expect = 7e-29
 Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
           ++L +WDTAGQE F +IT++YYRGA   +LV+  T RE+F  + SW E        ++ +
Sbjct: 51  VRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPM 109

Query: 69  MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
           +L+  K DL  +  ++ EE E  AK   L     S K   NV E F   A 
Sbjct: 110 VLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =   99 bits (249), Expect = 4e-27
 Identities = 52/127 (40%), Positives = 72/127 (56%), Gaps = 1/127 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQ 60
             ID +   L I DTAGQE + ++   Y R   G L VY IT R +F  +AS+ E   R 
Sbjct: 46  CVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRV 105

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
                + ++L+GNKCDL   R VST EG++ AK  G+ F+E SAK   NV+EAF +    
Sbjct: 106 KDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVRE 165

Query: 121 IYKKIQD 127
           I K +++
Sbjct: 166 IRKYLKE 172

Length = 189

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  100 bits (250), Expect = 6e-27
 Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 18/146 (12%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQ 60
           I    + IKLQ+WDTAGQE +RS+   YYRGA G L+VYD T RE +      WLE+ R+
Sbjct: 47  IEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRE 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI---------------FMEASAK 105
            A  ++ I+L+GNK DL   ++ S E   Q  +E  L+                +E SAK
Sbjct: 107 LAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAK 166

Query: 106 --TAQNVEEAFIKTAATIYKKIQDGV 129
             T  NV E F +    + ++I+  V
Sbjct: 167 SLTGPNVNELFKELLRKLLEEIEKLV 192

Length = 219

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 97.9 bits (244), Expect = 2e-26
 Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 2/121 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I  R++F  + ++ E  ++ 
Sbjct: 42  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRV 101

Query: 62  ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            +++ + ++L+GNKCDLA R  VST +G+  AK +G+ ++E SAKT Q VEEAF      
Sbjct: 102 KDSDDVPMVLVGNKCDLAART-VSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160

Query: 121 I 121
           I
Sbjct: 161 I 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 97.2 bits (242), Expect = 3e-26
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           I +D+ P  L+I DTAG E F S+   Y +   G ++VY +  ++TF  +    +   R 
Sbjct: 42  IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRV 101

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
                + I+L+GNK DL   R VS+ EG   A+E G  FME SAK+   V E F +
Sbjct: 102 KGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAE 157

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 97.0 bits (242), Expect = 4e-26
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 3   TIDNKPIKLQIWDTAGQE--SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           TID + + L+I DT GQ+            R A G +LVY IT R +F+ ++  L+  R+
Sbjct: 41  TIDGEQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIRE 100

Query: 61  HANA--NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA-KTAQNVEEAFIK 116
                  + ++L+GNK DL H R VSTEEG++ A E G +F E SA +    V+  F +
Sbjct: 101 IKKRDGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHE 159

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 95.5 bits (238), Expect = 1e-25
 Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR--ETFNHLASWLEDAR 59
           I  D K  K  + DTAGQE + +I R YYR    +L V+DI     +    L    ++  
Sbjct: 44  IEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEII 103

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            HA + + I+L+GNK DL   + + T     FAK +G   +  SA+T +N++ AF
Sbjct: 104 HHAESGVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 95.7 bits (239), Expect = 1e-25
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 14/126 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQ 60
           +T+D K + L +WDTAGQE +  +    Y      LL + +    +F ++ + W  + + 
Sbjct: 41  VTVDGKQVNLGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKH 100

Query: 61  HANANMTIMLIGNKCDL-----------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
           +   N+ I+L+G K DL             ++ ++ EEGE+ AKE G + +ME SA T +
Sbjct: 101 YCP-NVPIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQE 159

Query: 109 NVEEAF 114
            ++E F
Sbjct: 160 GLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 93.4 bits (232), Expect = 9e-25
 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D +   L+I DTAG E F ++   Y +   G +LVY IT + TFN L    E   R 
Sbjct: 42  VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRV 101

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
               ++ ++L+GNKCDL   R V  E+G+  A++ G  F+E SAK   NV E F 
Sbjct: 102 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFY 156

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 92.6 bits (230), Expect = 2e-24
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           +   +  ++L I+D+AGQE F  +  + +   A   +VYD+T   +FN+ + W+   R H
Sbjct: 46  VPDTSDSVELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTH 105

Query: 62  ANANMTI-MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
           ++   T  +L+GNKCDL  RR V   + +  A+ + L F E SAK     E  F+  A 
Sbjct: 106 SHGLHTPGVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 91.5 bits (227), Expect = 5e-24
 Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQ 60
           I +D +   L+I DTAG E F ++   Y +   G  LVY IT +++FN L    E   R 
Sbjct: 42  IEVDCQQCMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRV 101

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 115
               ++ ++L+GNKCDL   R VS EEG+  A++ G   F+E SAK+  NV+E F 
Sbjct: 102 KDTEDVPMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFY 157

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 91.5 bits (228), Expect = 6e-24
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 18/134 (13%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQ 60
           + +D KP++L +WDTAGQE +  +    Y      L+ + +    +F N    W  + + 
Sbjct: 39  VEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKH 98

Query: 61  HANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKE-HGLIFMEASAKTA 107
               N+ I+L+G K DL + ++            V+ E+G+  AK    + ++E SA T 
Sbjct: 99  FCP-NVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQ 157

Query: 108 QNVEEAF---IKTA 118
           + V E F   I+ A
Sbjct: 158 EGVREVFEEAIRAA 171

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 90.8 bits (226), Expect = 1e-23
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 13/124 (10%)

Query: 3   TIDN---KPIK-------LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA 52
           TI+N   K I        L+I DTAGQ+ +  + + Y  G  G +LVY +T R++F  + 
Sbjct: 33  TIENTFSKIITYKGQEYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFE-VV 91

Query: 53  SWLEDA--RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 110
             + D         ++ I+L+GNK DL   R VS EEG++ A+  G  F+E+SAK  +NV
Sbjct: 92  KVIYDKILDMLGKESVPIVLVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENV 151

Query: 111 EEAF 114
           EEAF
Sbjct: 152 EEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 90.3 bits (224), Expect = 2e-23
 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +  + + L IWDTAG E + +++R YYRGA  A++ YD+T   +F     W+++ +  
Sbjct: 43  MVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN- 101

Query: 62  ANANMTIMLIGNKCDLAH----RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 117
              +  I L G K DL       R V   + + FA E      E S+KT QNV+E F K 
Sbjct: 102 LEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Query: 118 A 118
           A
Sbjct: 162 A 162

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 89.5 bits (222), Expect = 4e-23
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 2/116 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQ 60
           + ID +   L+I DTAG E F ++   Y +   G LLVY +T   + N L    E   R 
Sbjct: 42  VEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRI 101

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 115
             + N+ ++L+GNK DL   R VS E+G   +++ G + F E SA+   NV+E FI
Sbjct: 102 KDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFI 157

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 88.0 bits (218), Expect = 1e-22
 Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANM 66
           P  LQ+WDTAGQE F+ I  +YYRGA   ++V+D+T   +  H   WLEDA +++  +++
Sbjct: 48  PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSV 107

Query: 67  TIMLIGNKCDLAHRRAVSTEEGE--QFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123
            + L+G K DL+     +  E +  + A+E    +   SA T +NV + F + A+  ++
Sbjct: 108 LLFLVGTKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFE 166

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 85.3 bits (211), Expect = 1e-21
 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 6/118 (5%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D   + LQIWDTAGQE FRS+   +YRG+   LL + +   ++F +L++W ++   +
Sbjct: 47  LEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 106

Query: 62  ANAN----MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 114
           A+         +++GNK D+  R+ VSTEE + + +++G   + E SAK A NV  AF
Sbjct: 107 ADVKEPESFPFVILGNKIDIPERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 85.3 bits (211), Expect = 1e-21
 Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 5/118 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITR-SYYRGAAGALLVYDITRRETFNHLASWLEDAR 59
           +I+       LQI DT G   F ++ R S  +G A  +LVY IT +++   L    E   
Sbjct: 41  VISCSKSICTLQITDTTGSHQFPAMQRLSISKGHA-FILVYSITSKQSLEELKPIYELIC 99

Query: 60  QHANANMT---IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           +    N+    IML+GNKCD +  R VS+ EG   A+     FME SAKT  NV+E F
Sbjct: 100 EIKGNNLEKIPIMLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 84.5 bits (209), Expect = 2e-21
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 4/112 (3%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
             + K I +  WDTAGQE F+++  SYY  A   +LV+D+TR+ T+ +L+ W E+ R++ 
Sbjct: 43  KFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY- 101

Query: 63  NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
              +  +++ NK DL       T++   FA++H L     SA    NV + F
Sbjct: 102 RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 83.1 bits (206), Expect = 8e-21
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
            I+  +WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D       N+ 
Sbjct: 48  KIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIP 106

Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           I+L GNK D+  R+     +   F ++  L + E SAK+  N E+ F+  A
Sbjct: 107 IVLCGNKVDIKDRK--VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 84.5 bits (209), Expect = 9e-21
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 6   NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 65
           +  + LQ+WD  GQ+    +   Y  GA    LVYDIT  ++F +L  WL   ++    +
Sbjct: 47  SLNVTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEES 106

Query: 66  MT---IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
            T   ++L+GNK DL H R V+ E+  +FA+E+ +  +  SAKT   V   F + AA +
Sbjct: 107 ETKPKMVLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 79.5 bits (196), Expect = 2e-19
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQ 60
             IDN+P  L I DTAGQ  F ++   Y R   G ++ Y +T R +F   + + E   R 
Sbjct: 43  ARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRV 102

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
               ++ ++L+GNK DL  +R V+TEEG   A+E    F E SA     +++AF      
Sbjct: 103 RLTEDIPLVLVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVRE 162

Query: 121 IYKK 124
           I +K
Sbjct: 163 IRRK 166

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 76.0 bits (187), Expect = 4e-18
 Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 1   MITIDNKPIKLQIWDTAGQESF-----RSITRSYYRGAAGALLVYDITRRETF-NHLASW 54
           +  +D   +KL + DT G + F       + R   RGA   LLV D T RE+  +     
Sbjct: 39  VKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLI 98

Query: 55  LEDARQHANANMTIMLIGNKCDL-AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 113
           L   R+     + I+L+GNK DL   R        E+ AK  G+   E SAKT + V+E 
Sbjct: 99  LRRLRKE---GIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDEL 155

Query: 114 F 114
           F
Sbjct: 156 F 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PI   +WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 57  PICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIP 115

Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           I+L+GNK D+  R+ V   +   F ++  L + + SAK+  N E+ F+  A  +
Sbjct: 116 IVLVGNKVDVKDRQ-VKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL 167

Length = 215

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
            I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIP 119

Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+ +R+     +   F ++  L + E SAK+  N E+ F+
Sbjct: 120 IVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165

Length = 219

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 70.5 bits (173), Expect = 6e-16
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 15/127 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQ 60
           + +D KP++LQ+ DTAGQ+ F  +    Y      LL + +    +F +++  W+ + R+
Sbjct: 41  VLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK 100

Query: 61  HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H N    I+L+G + DL               + VS    +  A++ G   ++E SA T 
Sbjct: 101 H-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159

Query: 108 QNVEEAF 114
           +N++E F
Sbjct: 160 KNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PI+  +WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 43  PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIP 101

Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           I+L GNK D+  R+  +      F ++  L + + SAK+  N E+ F+  A
Sbjct: 102 IVLCGNKVDVKDRKVKAKS--ITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 69.0 bits (169), Expect = 7e-15
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS----WLED 57
           +++D +   L ++D   QE    +  S  +     ++VY +T R +F   AS     L  
Sbjct: 42  VSVDGEEATLVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSF-EKASELRIQLRR 100

Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           ARQ  +  + I+L+GNK DL   R VS +EG   A      F+E SA    NV+E F
Sbjct: 101 ARQAED--IPIILVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 6   NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANA 64
            K I+L +WDTAGQE +  +    Y      L+ Y +    + +++   W  +   H   
Sbjct: 49  GKIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCP 107

Query: 65  NMTIMLIGNKCDL-AHRRA-----------VSTEEGEQFAKEHGLI-FMEASAKTAQNVE 111
              I+L+G K DL   + +           V+ E+GE  AK  G + ++E SAK  +NV+
Sbjct: 108 GTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVD 167

Query: 112 EAFIKTAA 119
           E F   A 
Sbjct: 168 EVF-DAAI 174

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQ 60
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  N    W  + + 
Sbjct: 42  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 100

Query: 61  HANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N+ I+L+GNK DL +            +  V  EEG   A++ G   ++E SAKT 
Sbjct: 101 HFCPNVPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160

Query: 108 QNVEEAFI 115
           + V E F 
Sbjct: 161 EGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 65.3 bits (159), Expect = 8e-14
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 13/125 (10%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQ 60
           + +D   + L +WDTAGQE +  +    YRGA   LL + +  + ++ N L  W+ + R 
Sbjct: 42  VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRH 101

Query: 61  HANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHGL-IFMEASAKTAQN 109
           +A   + I+L+G K DL   +           ++T +GE+  K+ G   ++E S+KT QN
Sbjct: 102 YA-PGVPIVLVGTKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQN 160

Query: 110 VEEAF 114
           V+  F
Sbjct: 161 VKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 64.9 bits (158), Expect = 1e-13
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQ 60
           I +D   ++L +WDTAGQE F  +    Y      +L + +   ++  ++ S WL + R 
Sbjct: 41  IFVDGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRH 100

Query: 61  HANANMTIMLIGNKCDL--------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVE 111
           H    + ++L+  KCDL             +S EEG   AK  +   ++E SAK  + V 
Sbjct: 101 HCPG-VKLVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVN 159

Query: 112 EAFIKTAA 119
           EAF + A 
Sbjct: 160 EAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 63.4 bits (154), Expect = 9e-13
 Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)

Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           P  + IWDTAG+E F  +   Y RGAA  +L YD++  ++   L          AN +  
Sbjct: 43  PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL 102

Query: 68  IMLIGNKCDLAH-------------------RRAVSTEEGEQFAKE----HGL------- 97
             ++GNK DL                     +R V+ E+ + F K       L       
Sbjct: 103 FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPA 162

Query: 98  ---IFMEASAKTAQNVEEAF 114
              +  E SAKT  NV+E F
Sbjct: 163 AEKMCFETSAKTGYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLASWLEDA 58
           T++ K +K  +WD  GQ+  R + + YY    G + V D + R    E  N L   L + 
Sbjct: 37  TVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEE 96

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-----IFMEASAKTAQNVEEA 113
                    ++++ NK DL    A++  E  +      +          SA T   ++E 
Sbjct: 97  E---LKGAPLLILANKQDLPG--ALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEG 151

Query: 114 F 114
            
Sbjct: 152 L 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 15/127 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F N  A W  + R 
Sbjct: 42  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 101

Query: 61  HANANMTIMLIGNKCD----------LAHRR--AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K D          L  ++   ++  +G   AKE G + ++E SA T 
Sbjct: 102 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160

Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 161 RGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 59.5 bits (144), Expect = 1e-11
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 15/131 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQ 60
             +D KP++L +WDTAGQE +  +    Y  A   L+ + I   ++  N    W+E+ R+
Sbjct: 42  CRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRR 101

Query: 61  HANANMTIMLIGNKCDL----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQN 109
           +   N+ ++L+G K DL          A    V  ++ +  A+      +ME SA T + 
Sbjct: 102 YC-PNVPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEG 160

Query: 110 VEEAFIKTAAT 120
           V++ F   AAT
Sbjct: 161 VDDVF--EAAT 169

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 17/134 (12%)

Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHA 62
           +D + I+L +WDT+G   + ++    Y  +   L+ +DI+R ET  + L  W  + R+  
Sbjct: 44  VDKQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC 103

Query: 63  NANMTIMLIGNKCD----------LAHRRA--VSTEEGEQFAKEHG-LIFMEASAKTAQN 109
             N  ++L+G K D          L+++R   VS E+G   AK+ G   ++E SAKT++N
Sbjct: 104 -PNTPVLLVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSEN 162

Query: 110 -VEEAF-IKTAATI 121
            V + F + T A +
Sbjct: 163 SVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I+I    I   IWD  GQ  F ++     + A   L ++D+TR+ T N +  W   AR  
Sbjct: 42  ISIRGTEITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGF 101

Query: 62  ANANMTIMLIGNKCDL 77
               + I L+G K DL
Sbjct: 102 NKTAIPI-LVGTKYDL 116

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS---WLEDA 58
           + +D     L IWD  G+E  +     + + A   LLVYD+T RE+ N ++    WL + 
Sbjct: 41  LEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL 100

Query: 59  RQHANANMTIMLIGNKC 75
           R+     + ++L+GNK 
Sbjct: 101 RK-LGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 52.1 bits (125), Expect = 7e-09
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ-HANANMT 67
           + + I DT+G  SF ++ +   +      LVY +   E+F  +    E+  +   +  + 
Sbjct: 47  VTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVP 106

Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAK---EHGLIFMEASAKTAQNVEEAF 114
           I+++GNK D    R V   +     +    +G  F+EASAK  +NV E F
Sbjct: 107 IVVVGNKIDSLAERQVEAADALSTVELDWNNG--FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T+  K +K  +WD  GQES R + R+Y+      + V D   R+        L + L + 
Sbjct: 52  TVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEE 111

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL------IFMEASAKTAQNVEE 112
                A+  ++++ NK DL    A+S  E  +    H L      I    SA T + ++E
Sbjct: 112 E---LADAPLLILANKQDL--PGAMSEAEIRELLGLHELKDRPWEIQG-CSAVTGEGLDE 165

Query: 113 AFIKTAATI 121
                +  I
Sbjct: 166 GLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 52.4 bits (125), Expect = 9e-09
 Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 15/134 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQ 60
           +  + + ++L +WDT+G   + ++    Y  +   LL +DI+R E F+  L  W  +   
Sbjct: 54  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILD 113

Query: 61  HANANMTIMLIGNKCD----------LAHRRA--VSTEEGEQFAKEHGL-IFMEASAKTA 107
           +   +  I+LIG K D          L++++   +S E+G   AK+ G   ++E SA T+
Sbjct: 114 YC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTS 172

Query: 108 QNVEEAFIKTAATI 121
           +    +  +TA+ +
Sbjct: 173 EKSIHSIFRTASLL 186

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%)

Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ID + I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 48  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 107

Query: 64  ANMTIMLIGNKCDLA-----------HRRA-VSTEEGEQFAKEHGLI-FMEASAKTAQN- 109
            N  ++L+G K DL            HR+  VS ++G   AK+ G   ++E SA  ++N 
Sbjct: 108 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 167

Query: 110 VEEAF-IKTAATIYK 123
           V + F + T A + K
Sbjct: 168 VRDIFHVATLACVNK 182

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 4   IDNKPIKLQIWDTAGQESFRSITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQ-- 60
           I  +  +L I DT+G   F ++ R S   G    +LV+ +  RE+F  +    E   +  
Sbjct: 43  IRGEVYQLDILDTSGNHPFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILETK 101

Query: 61  -------HANANMTIMLIGNKCDLAHRRAVSTEEGEQF-AKEHGLIFMEASAKTAQNVEE 112
                    N  + +++ GNK D    R V  +E EQ    +    + E SAK   N++E
Sbjct: 102 SCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDE 161

Query: 113 AF 114
            F
Sbjct: 162 MF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 50.0 bits (119), Expect = 5e-08
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 15/133 (11%)

Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ID   I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 44  IDKHRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC 103

Query: 64  ANMTIMLIGNKCD----------LAHRR--AVSTEEGEQFAKEHGLI-FMEASAKTAQN- 109
            N  ++L+G K D          L+ +R   V+ E+G   A++ G + ++E S++ ++N 
Sbjct: 104 PNAKLVLVGCKLDMRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENS 163

Query: 110 VEEAF-IKTAATI 121
           V + F + T A++
Sbjct: 164 VRDVFHVTTLASV 176

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQH 61
           TI+    +L  WD  GQE  RS+   YY  + G + V D T RE FN   S  E      
Sbjct: 45  TIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNE 104

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI------FMEASAKTAQNVEEA 113
           A   + ++++ NK DL    +V+ E  E F     LI          SA   + VEE 
Sbjct: 105 ALEGVPLLVLANKQDLPDALSVA-EIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 22/137 (16%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T++ K +K  +WD  GQ+  R + R YY+   G + V D   RE          DAR+  
Sbjct: 55  TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIG-------DAREEL 107

Query: 63  NA--------NMTIMLIGNKCDLAHRRAVSTEE-----GEQFAKEHGLIFMEASAKTAQN 109
                     +  +++  NK DL +  A+ST E     G    ++         A TAQ 
Sbjct: 108 ERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQG 165

Query: 110 VEEAFIKTAATIYKKIQ 126
           + E     +A I K +Q
Sbjct: 166 LYEGLDWLSANIKKSMQ 182

Length = 182

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSI------TRSYYRGAAGALLVYDITRRETFNHLASWL 55
              + K I+L +WD  GQE + +       +RS Y      LLV+D+   +  + +  WL
Sbjct: 44  PAPERKKIRLNVWDFGGQEIYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWL 97

Query: 56  EDARQHANANMTIMLIGNKCDLAH 79
              +     +  ++L+G   D + 
Sbjct: 98  RQIKAFGGVSP-VILVGTHIDESC 120

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F N    W+ +   
Sbjct: 42  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 101

Query: 61  HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H       +L+G + DL              ++ ++ E GE+ A++   + ++E SA T 
Sbjct: 102 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160

Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 161 KGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DAR 59
           T+  K I   +WD  GQ+  R + R YY    G + V D   R+  +     L    +  
Sbjct: 51  TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNED 110

Query: 60  QHANANMTIMLIGNKCDL 77
           +  +A   I++  NK DL
Sbjct: 111 ELRDA--VILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 6   NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-A 64
            K + L +WD  GQE  R++ + Y     G + V D +     +     L+   ++ +  
Sbjct: 41  EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIK 100

Query: 65  NMTIMLIGNKCDLAHRRAVSTEE------GEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
            + ++L+ NK DL    A++ EE       +++  +        SA T + + EAF K A
Sbjct: 101 GVPVVLLANKQDLPG--ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           I  K I+  +WD  GQES RS   +YY      +LV D T RE        L     H +
Sbjct: 54  IVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED 113

Query: 64  ANMTIMLI-GNKCDLAHRRAVS-TEEGEQFA----KEHGLIFMEASAKTAQNVEEA 113
               ++L+  NK DL  + A++  E  E       ++H        A T + + E 
Sbjct: 114 LRKAVLLVLANKQDL--KGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQH 61
            +D + + L +WDTAGQE +  +    Y      ++ + I    ++ N    W  +   H
Sbjct: 45  AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH 104

Query: 62  ANANMTIMLIGNKCDLAHRRAV------------STEEGEQFAKE-HGLIFMEASAKTAQ 108
              N+ I+L+G K DL +                + ++G   AK+ H + ++E SA    
Sbjct: 105 C-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQD 163

Query: 109 NVEEAF 114
            V+E F
Sbjct: 164 GVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 11/90 (12%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLED 57
           +TI N  +K   +D  G E  R + + Y+    G + + D    E F      L S L D
Sbjct: 58  LTIGN--VKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLND 115

Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEE 87
                 AN+ I+++GNK D     AVS EE
Sbjct: 116 ---EELANVPILILGNKIDK--PGAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 22/125 (17%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQ 60
           +T +  P    I DT+ +   R+   +  R A    LVY + R  T   + + WL   R+
Sbjct: 44  VTPERVPTT--IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRR 101

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIF-----------MEASAKTAQN 109
                + I+L+GNK DL        +   Q   E  ++            +E SAKT  N
Sbjct: 102 LGV-KVPIILVGNKSDL-------RDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLIN 153

Query: 110 VEEAF 114
           V E F
Sbjct: 154 VSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 43.5 bits (102), Expect = 8e-06
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           +T+  K   L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ + ++
Sbjct: 41  VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 100

Query: 61  HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGL-IFMEASAKTA 107
           +A  N+  +LIG + DL               + ++ E+G++ AKE G   ++E SA T 
Sbjct: 101 YA-PNVPYLLIGTQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQ 159

Query: 108 QNVEEAFIKTAATIY 122
           + ++  F +    I 
Sbjct: 160 KGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 7   KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN 65
           K +    WD  GQE  R + +SY R   G + V D    E      + L    +   N  
Sbjct: 50  KGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQG 109

Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 98
           + ++++ NK DL    A+   E E+    H L 
Sbjct: 110 VPVLVLANKQDL--PNALPVSEVEKLLALHELS 140

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 47  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQEL 99

Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  +++  NK DL 
Sbjct: 100 HRIINDREMRDALLLVFANKQDLP 123

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T++    KL IWD  GQ+S RS  R+Y+      + V D + R         L   L + 
Sbjct: 52  TLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEE 111

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEA 113
           R    A  T+++  NK DL    A+S EE  +       K H       SA T +N+ + 
Sbjct: 112 RL---AGATLLIFANKQDLP--GALSPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDG 166

Query: 114 F 114
            
Sbjct: 167 I 167

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 17/93 (18%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE        + +AR+  
Sbjct: 38  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER-------IGEAREEL 90

Query: 63  NA--------NMTIMLIGNKCDLAHRRAVSTEE 87
                     +  +++  NK DL    A+S  E
Sbjct: 91  QRMLNEDELRDAVLLVFANKQDL--PNAMSAAE 121

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T++ K +K  IWD  G+   R + + YY      + V D + R+  +   S L       
Sbjct: 37  TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEK 96

Query: 63  NANMTIMLI-GNKCDLAHRRAVSTEEGEQFAKEHGL 97
                ++LI  NK D+A   A+S EE  +    H L
Sbjct: 97  ELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKL 130

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 22/44 (50%)

Query: 3  TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 46
          T+  K +K Q+WD  GQ S R   R YY      + V D T R+
Sbjct: 37 TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
           T++ K I   +WD  GQ+  R + R Y++   G + V D   R+        L     ED
Sbjct: 55  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114

Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVS 84
             + A     +++  NK DL +    +
Sbjct: 115 ELRDA----VLLVFANKQDLPNAMNAA 137

Length = 181

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 23/131 (17%)

Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA 62
           +D   + L++WDT G        R  Y  +   LL + I    +  ++ + W  + R   
Sbjct: 61  VDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC 118

Query: 63  NANMTIMLIGNKCDLAH-------------------RRAVSTEEGEQFAKEHGLIFMEAS 103
              + ++L+G K DL +                      +  E G   AKE G+ + E S
Sbjct: 119 -PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETS 177

Query: 104 AKTAQNVEEAF 114
             T   V++ F
Sbjct: 178 VVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH----LASWLEDARQHANA 64
            KL +WD  GQ   R   R+Y+      + V D   R+ F      L   LE+ +    A
Sbjct: 59  FKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKL---A 115

Query: 65  NMTIMLIGNKCDLAHRRAVSTEE 87
            + +++  NK DL    A   EE
Sbjct: 116 GVPVLVFANKQDLL--TAAPAEE 136

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 37.8 bits (89), Expect = 0.001
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 36/149 (24%)

Query: 2   ITIDNKPIKLQIWDTAG---------QESFRSITRSYYRGAAGA---LLVYDITRRETFN 49
           I +D  P++L   DTAG         +     I RS       A   LLV D +   T  
Sbjct: 258 INLDGIPLRLI--DTAGIRETDDEVEKIG---IERSREA-IEEADLVLLVLDASEPLTEE 311

Query: 50  HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 109
                 E        +  ++++ NK DL        E   +      +I +  SAKT + 
Sbjct: 312 DDEILEE------LKDKPVIVVLNKADLT------GEIDLEEENGKPVIRI--SAKTGEG 357

Query: 110 VE---EAFIKTAATIYKKIQDGVFDVSNE 135
           ++   EA  + A   +   Q+GVF ++N 
Sbjct: 358 IDELREAIKELAFGGFGGNQEGVF-LTNA 385

Length = 449

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 11  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLEDARQHANANM 66
           +++WD  GQ  FRS+   Y RG    + V D   RE      N L   LE         +
Sbjct: 46  IKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEG---I 102

Query: 67  TIMLIGNKCDL 77
            ++++GNK DL
Sbjct: 103 PLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 23/92 (25%)

Query: 11  LQIWDTAGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASW-LE--------- 56
           +++WD  G     ES +S    +Y    G + V+D+T +++  +L  W LE         
Sbjct: 56  VELWDVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPA 115

Query: 57  ---------DARQHANANMTIMLIGNKCDLAH 79
                    D+ Q A   + +++IG K D   
Sbjct: 116 GLLVTNGDYDSEQFAGNPVPLLVIGTKLDQIP 147

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.98
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.98
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.97
PLN03108	210	Rab family protein; Provisional	99.97
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.96
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.96
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.96
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.96
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
PLN03110	216	Rab GTPase; Provisional	99.95
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.95
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.95
KOG0394	210	consensus Ras-related GTPase [General function pre	99.95
PTZ00099	176	rab6; Provisional	99.95
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.94
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.94
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.94
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.94
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.94
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.94
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.94
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.94
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.94
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.94
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.94
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.94
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.94
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.93
PTZ00369	189	Ras-like protein; Provisional	99.93
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.93
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.93
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.93
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.93
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.93
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.93
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.93
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.92
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.92
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.92
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.92
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.92
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.92
PLN03118	211	Rab family protein; Provisional	99.92
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.92
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.92
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.92
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.92
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.92
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.91
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.91
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.91
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.91
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.91
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.91
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.91
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.91
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.91
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.91
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.91
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.9
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.9
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.9
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.9
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.9
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.9
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.9
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.9
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.9
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.9
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.9
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.89
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.89
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.89
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.89
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.89
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.89
KOG0395	196	consensus Ras-related GTPase [General function pre	99.89
PLN00223	181	ADP-ribosylation factor; Provisional	99.88
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.88
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.88
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.88
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.88
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.88
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.88
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.88
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.87
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.87
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.87
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.87
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.86
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.86
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.86
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.86
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.86
PTZ00133	182	ADP-ribosylation factor; Provisional	99.86
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.86
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.86
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.85
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.84
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.84
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.83
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.83
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.83
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.83
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.83
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.83
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.83
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.82
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.82
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.82
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.81
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.8
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.8
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.79
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.79
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.79
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.78
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.78
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.76
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.75
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.74
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.74
PLN00023	334	GTP-binding protein; Provisional	99.72
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.71
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.71
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.7
PRK12299	335	obgE GTPase CgtA; Reviewed	99.69
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.69
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.68
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.67
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.66
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.66
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.65
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.64
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.64
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.63
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.62
KOG1673	205	consensus Ras GTPases [General function prediction	99.62
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.62
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.61
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.6
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.6
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.6
COG1100	219	GTPase SAR1 and related small G proteins [General	99.59
PRK05433	600	GTP-binding protein LepA; Provisional	99.59
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.57
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.57
cd00881	189	GTP_translation_factor GTP translation factor fami	99.56
COG2229	187	Predicted GTPase [General function prediction only	99.56
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.55
PRK04213	201	GTP-binding protein; Provisional	99.55
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.55
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.54
PRK03003	472	GTP-binding protein Der; Reviewed	99.52
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.51
PRK12297	424	obgE GTPase CgtA; Reviewed	99.51
PRK03003	472	GTP-binding protein Der; Reviewed	99.51
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.5
PRK15494	339	era GTPase Era; Provisional	99.5
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.5
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.49
CHL00189	742	infB translation initiation factor 2; Provisional	99.49
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.49
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.48
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.47
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.47
PRK05306	787	infB translation initiation factor IF-2; Validated	99.46
PRK12296	500	obgE GTPase CgtA; Reviewed	99.45
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.45
PRK00093	435	GTP-binding protein Der; Reviewed	99.45
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.44
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.44
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.44
PRK11058	426	GTPase HflX; Provisional	99.44
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.43
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.43
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.43
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.42
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.41
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.4
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.4
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.39
PRK12298	390	obgE GTPase CgtA; Reviewed	99.38
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.37
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.37
PRK10218	607	GTP-binding protein; Provisional	99.36
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.36
PRK12317	425	elongation factor 1-alpha; Reviewed	99.36
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.35
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.35
PRK00089	292	era GTPase Era; Reviewed	99.34
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.33
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.31
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.31
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.31
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.3
PRK04004	586	translation initiation factor IF-2; Validated	99.3
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.29
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.28
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.28
PRK00093	435	GTP-binding protein Der; Reviewed	99.27
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.27
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.26
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.26
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.24
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.23
PRK14845	1049	translation initiation factor IF-2; Provisional	99.23
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.21
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.19
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.17
COG1160	444	Predicted GTPases [General function prediction onl	99.17
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.15
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.14
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.12
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.12
PRK12736	394	elongation factor Tu; Reviewed	99.12
COG1159	298	Era GTPase [General function prediction only]	99.12
KOG1145	683	consensus Mitochondrial translation initiation fac	99.12
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.1
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.1
PLN00043	447	elongation factor 1-alpha; Provisional	99.09
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.08
PRK09866	741	hypothetical protein; Provisional	99.07
PRK12289	352	GTPase RsgA; Reviewed	99.06
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.06
PRK13768	253	GTPase; Provisional	99.04
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.04
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.03
COG0486	454	ThdF Predicted GTPase [General function prediction	99.02
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.02
PRK12735	396	elongation factor Tu; Reviewed	99.02
PRK13351	687	elongation factor G; Reviewed	99.02
COG1160	444	Predicted GTPases [General function prediction onl	99.01
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.0
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.98
PRK12288	347	GTPase RsgA; Reviewed	98.98
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.97
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.96
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.96
PRK12740	668	elongation factor G; Reviewed	98.95
PRK00098	298	GTPase RsgA; Reviewed	98.94
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.93
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.93
CHL00071	409	tufA elongation factor Tu	98.91
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.91
COG2262	411	HflX GTPases [General function prediction only]	98.9
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.87
PTZ00141	446	elongation factor 1- alpha; Provisional	98.87
PRK00049	396	elongation factor Tu; Reviewed	98.87
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.86
PLN03127	447	Elongation factor Tu; Provisional	98.82
PLN03126	478	Elongation factor Tu; Provisional	98.79
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.79
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.79
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.77
PRK12739	691	elongation factor G; Reviewed	98.77
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.76
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.75
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.75
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.72
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.72
COG1084	346	Predicted GTPase [General function prediction only	98.7
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.7
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.68
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.64
COG0536	369	Obg Predicted GTPase [General function prediction	98.63
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.62
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.6
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.57
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.56
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.55
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.54
COG0218	200	Predicted GTPase [General function prediction only	98.54
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.53
KOG0090	238	consensus Signal recognition particle receptor, be	98.53
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.52
COG1163	365	DRG Predicted GTPase [General function prediction	98.51
PRK01889	356	GTPase RsgA; Reviewed	98.5
PRK13796	365	GTPase YqeH; Provisional	98.48
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.46
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.45
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.44
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.41
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.41
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.39
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.36
PRK00007	693	elongation factor G; Reviewed	98.33
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.31
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.3
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.28
PRK07560	731	elongation factor EF-2; Reviewed	98.27
COG1162	301	Predicted GTPases [General function prediction onl	98.26
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.25
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.18
PRK09602	396	translation-associated GTPase; Reviewed	98.15
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.13
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.12
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.12
COG3596	296	Predicted GTPase [General function prediction only	98.05
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.03
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.01
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.01
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.98
PTZ00416	836	elongation factor 2; Provisional	97.98
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.97
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.96
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.94
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.94
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.92
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.9
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.87
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.83
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.82
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.79
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.6
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.56
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.53
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.52
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.47
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.42
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.32
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.32
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.28
cd03110	179	Fer4_NifH_child This protein family's function is	97.22
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.21
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.12
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.1
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.09
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.96
KOG2484	435	consensus GTPase [General function prediction only	96.93
KOG0460	449	consensus Mitochondrial translation elongation fac	96.85
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.79
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.78
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.77
PTZ00258	390	GTP-binding protein; Provisional	96.71
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.62
COG1161	322	Predicted GTPases [General function prediction onl	96.56
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.36
KOG1143	591	consensus Predicted translation elongation factor	96.32
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	96.29
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	96.26
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	96.23
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.03
KOG0465	721	consensus Mitochondrial elongation factor [Transla	95.99
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	95.96
KOG0410	410	consensus Predicted GTP binding protein [General f	95.75
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	95.67
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	95.54
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.49
PRK14974	336	cell division protein FtsY; Provisional	95.33
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	95.25
PRK09601	364	GTP-binding protein YchF; Reviewed	95.22
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	95.2
COG0012	372	Predicted GTPase, probable translation factor [Tra	95.04
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	95.01
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	94.9
PHA02518	211	ParA-like protein; Provisional	94.84
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	94.63
PRK10416	318	signal recognition particle-docking protein FtsY;	94.57
cd02036	179	MinD Bacterial cell division requires the formatio	94.51
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	94.12
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	94.05
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	93.86
cd03111	106	CpaE_like This protein family consists of proteins	93.83
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	93.7
KOG2486	320	consensus Predicted GTPase [General function predi	92.99
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	92.68
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	92.62
TIGR00959	428	ffh signal recognition particle protein. This mode	91.97
COG1149	284	MinD superfamily P-loop ATPase containing an inser	91.68
PRK00771	437	signal recognition particle protein Srp54; Provisi	91.43
cd02117	212	NifH_like This family contains the NifH (iron prot	91.03
cd03112	158	CobW_like The function of this protein family is u	91.01
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	90.89
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	90.63
cd03115	173	SRP The signal recognition particle (SRP) mediates	90.54
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	90.35
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	90.34
KOG4273	418	consensus Uncharacterized conserved protein [Funct	89.68
KOG0780	483	consensus Signal recognition particle, subunit Srp	89.57
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	89.5
PRK10867	433	signal recognition particle protein; Provisional	89.41
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	89.36
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	89.15
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	88.75
CHL00175	281	minD septum-site determining protein; Validated	88.45
cd03114	148	ArgK-like The function of this protein family is u	87.61
cd02032	267	Bchl_like This family of proteins contains bchL an	87.22
PRK13849	231	putative crown gall tumor protein VirC1; Provision	87.15
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	86.98
COG3523	1188	IcmF Type VI protein secretion system component Va	86.95
KOG0781	587	consensus Signal recognition particle receptor, al	86.05
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	85.87
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	85.79
COG0523	323	Putative GTPases (G3E family) [General function pr	85.79
PRK10818	270	cell division inhibitor MinD; Provisional	85.39
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	84.96
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	84.87
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	84.73
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	83.62
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	83.55
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	83.08
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	82.68
COG5019	373	CDC3 Septin family protein [Cell division and chro	81.73
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	81.57
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	81.23

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-33  Score=196.89  Aligned_cols=155  Identities=45%  Similarity=0.784  Sum_probs=134.8

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ++.++|+.+.+++|||+||++|+.+..+||++|+|||||||+++..||+.+..|+.++.++...++|.++|+||+|+.+.
T Consensus        50 t~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~  129 (205)
T KOG0084|consen   50 TVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK  129 (205)
T ss_pred             EeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence            46799999999999999999999999999999999999999999999999999999999998888999999999999999


Q ss_pred             CCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCC
Q 031132           81 RAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQ  159 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (165)
                      ..++.++++.++..++++ ++++||+++.|++++|..|...+..+.............+.+.+          +++..+.
T Consensus       130 ~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~----------~~p~~~~  199 (205)
T KOG0084|consen  130 RVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLK----------GTPVKKS  199 (205)
T ss_pred             eecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeC----------CCCcccc
Confidence            999999999999999999 99999999999999999999999988877654443333333333          2233344


Q ss_pred             CCCCCC
Q 031132          160 AGGCCS  165 (165)
Q Consensus       160 ~~~c~~  165 (165)
                      ..+||+
T Consensus       200 ~~~~C~  205 (205)
T KOG0084|consen  200 NGGCCE  205 (205)
T ss_pred             cCCCCC
Confidence            555885

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-32  Score=193.30  Aligned_cols=155  Identities=39%  Similarity=0.730  Sum_probs=134.7

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ++.++...+.|.+|||+||++|+++.++||++|+++|+|||+++..||..++.|+..+.....+++-+.|++||+||.+.
T Consensus        46 tv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~  125 (200)
T KOG0092|consen   46 TVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER  125 (200)
T ss_pred             EEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence            46788889999999999999999999999999999999999999999999999999998887666777889999999888


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCC
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQA  160 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (165)
                      +++..++++.++...++.++|+||+++.|++++|..|.+.+...........++++.+.-....         + .+..+
T Consensus       126 R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~---------~-~~~~~  195 (200)
T KOG0092|consen  126 REVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSN---------Q-EPARP  195 (200)
T ss_pred             ccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccccccccccceecccC---------C-CCcCc
Confidence            8999999999999999999999999999999999999999988777765544444444433322         1 56678


Q ss_pred             CCCCC
Q 031132          161 GGCCS  165 (165)
Q Consensus       161 ~~c~~  165 (165)
                      .+|||
T Consensus       196 ~~~C~  200 (200)
T KOG0092|consen  196 SGCCA  200 (200)
T ss_pred             CCcCC
Confidence            88997

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.2e-31  Score=188.99  Aligned_cols=130  Identities=52%  Similarity=0.905  Sum_probs=123.8

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ++.++|..+.+++|||+||++|+.+...||++|+++++|||.++..||+.+..|+..+..+....+|.+||+||+|+...
T Consensus        53 ti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~  132 (207)
T KOG0078|consen   53 TIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK  132 (207)
T ss_pred             EEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc
Confidence            57899999999999999999999999999999999999999999999999999999999998778999999999999988


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF  130 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~  130 (165)
                      ++++.+.++.+|.++|+.++|+||++|.||+++|-.|.+.++++....+.
T Consensus       133 R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~~~  182 (207)
T KOG0078|consen  133 RQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDAEL  182 (207)
T ss_pred             ccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchhhh
Confidence            99999999999999999999999999999999999999999987666543

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=4.6e-31  Score=184.44  Aligned_cols=139  Identities=81%  Similarity=1.191  Sum_probs=132.2

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      .++||++.+.+++|||+|++.+++..+.||++|.++|+|||.+.+++|+.+..|+..+.++...+.-++|++||+||...
T Consensus        47 ~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r  126 (216)
T KOG0098|consen   47 MVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR  126 (216)
T ss_pred             EEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence            37899999999999999999999999999999999999999999999999999999999997788999999999999988


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcce
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGI  139 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~  139 (165)
                      +.++.+++..|++++++.++++||++++|++++|..+...|.+...++-+...+.+.+.
T Consensus       127 R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~~~~~~~~k~k  185 (216)
T KOG0098|consen  127 REVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGVFDDINESKGK  185 (216)
T ss_pred             ccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            99999999999999999999999999999999999999999999999888887777763

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-30  Score=182.19  Aligned_cols=126  Identities=43%  Similarity=0.735  Sum_probs=116.1

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCeEEEEeeCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH   79 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~   79 (165)
                      ++.+.+..+++++|||+||++|+.+.+.|++++.++|+|||+++..||+....|+..++..... ++-+++|+||.||.+
T Consensus        63 t~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d  142 (221)
T KOG0094|consen   63 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD  142 (221)
T ss_pred             EEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence            4678899999999999999999999999999999999999999999999999999999887764 578899999999999


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ++++..++....+.+++..|+++||+.|+||+++|..|...+.....
T Consensus       143 krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  143 KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            99999999999999999999999999999999999997776666544

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.5e-30  Score=183.29  Aligned_cols=135  Identities=54%  Similarity=0.930  Sum_probs=127.2

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ++.++++.+..++|||+||++|+++...||++|-+.++|||.+...+|+.+..|+.+++.+...++++++|+||+||...
T Consensus        55 t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l  134 (222)
T KOG0087|consen   55 TVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL  134 (222)
T ss_pred             ceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence            47899999999999999999999999999999999999999999999999999999999999889999999999999888


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCC
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE  135 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~  135 (165)
                      +.++.++++.+++..++.++++||..+.|++++|..++..|.+....+.......
T Consensus       135 raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~~~~  189 (222)
T KOG0087|consen  135 RAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDENND  189 (222)
T ss_pred             cccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            8899999999999999999999999999999999999999999877776666555

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=6.2e-29  Score=182.47  Aligned_cols=163  Identities=97%  Similarity=1.433  Sum_probs=150.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++|+|||+++..++..+..|+..+........|+++++||+|+....
T Consensus        48 i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~  127 (210)
T PLN03108         48 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (210)
T ss_pred             EEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence            46788889999999999999999999999999999999999999999999999988776654578999999999997766


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAG  161 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (165)
                      .+..++...++..++++++++||+++.|++++|.++.+.++++..++.+...++.++..+.+++||..++++...+++-.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (210)
T PLN03108        128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGG  207 (210)
T ss_pred             CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCC
Confidence            78888889999999999999999999999999999999999988888888888999999999999999999999999999


Q ss_pred             CCC
Q 031132          162 GCC  164 (165)
Q Consensus       162 ~c~  164 (165)
                      +||
T Consensus       208 ~~~  210 (210)
T PLN03108        208 GCC  210 (210)
T ss_pred             CCC
Confidence            999

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.3e-30  Score=173.44  Aligned_cols=164  Identities=49%  Similarity=0.783  Sum_probs=153.1

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ++.+.++.+.+++|||+||++|++..+.||++|-+.++|||++++++|+.+-+|+..++....+++-+++++||.||.+.
T Consensus        50 IinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~  129 (214)
T KOG0086|consen   50 IVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE  129 (214)
T ss_pred             eeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence            46788999999999999999999999999999999999999999999999999999998887778888999999999999


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCC
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQA  160 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (165)
                      ++++..+...++.+..+-++++||++|+|+++.|-.....|+.+.+.++++.+....|.+-+-+..+.+--|++++..-+
T Consensus       130 R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~  209 (214)
T KOG0086|consen  130 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNP  209 (214)
T ss_pred             hhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988888888877777777777


Q ss_pred             CCCC
Q 031132          161 GGCC  164 (165)
Q Consensus       161 ~~c~  164 (165)
                      ..|-
T Consensus       210 ~~c~  213 (214)
T KOG0086|consen  210 QPCG  213 (214)
T ss_pred             CCCC
Confidence            8883

>cd04120 Rab12 Rab12 subfamily

Probab=99.96  E-value=3.2e-28  Score=177.62  Aligned_cols=124  Identities=48%  Similarity=0.818  Sum_probs=112.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.++++.+.+++|||+|+++|+.+|+.+++++|++|+|||++++.+|+.+..|+..+......+.|+++|+||+|+...+
T Consensus        42 i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~  121 (202)
T cd04120          42 VELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR  121 (202)
T ss_pred             EEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence            56788899999999999999999999999999999999999999999999999998876654679999999999997777


Q ss_pred             CCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .+...+...++... ++.+++|||++|.|++++|.++.+.+.+..
T Consensus       122 ~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~  166 (202)
T cd04120         122 EISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM  166 (202)
T ss_pred             ccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence            78888888888775 788999999999999999999999887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=5.3e-28  Score=165.94  Aligned_cols=157  Identities=43%  Similarity=0.727  Sum_probs=136.0

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCe-EEEEeeCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      .|..+.+++|||+||++|+++...||+++-++++|||.++..||+.+.+|+.+...+.. +..+ +.+|++|+||...++
T Consensus        54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq  133 (213)
T KOG0091|consen   54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ  133 (213)
T ss_pred             CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence            57889999999999999999999999999999999999999999999999999877765 4444 467899999998899


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCC-CCCCCCCCCCCCCCCC
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGG-IPGPSGGRDGSSSQAG  161 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  161 (165)
                      ++-+++..++..+|+.++|+||++|.|+++.|.-|.+.|.....++++..+..=.+.+++.-- ++.    .....+-++
T Consensus       134 Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~----s~~~~~P~k  209 (213)
T KOG0091|consen  134 VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPR----SPSRKQPSK  209 (213)
T ss_pred             ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCC----cccccCCCC
Confidence            999999999999999999999999999999999999999999999888888887777774221 111    233445567


Q ss_pred             CCCC
Q 031132          162 GCCS  165 (165)
Q Consensus       162 ~c~~  165 (165)
                      .|||
T Consensus       210 ~c~C  213 (213)
T KOG0091|consen  210 PCQC  213 (213)
T ss_pred             CCCC
Confidence            8888

>cd04121 Rab40 Rab40 subfamily

Probab=99.96  E-value=1.7e-27  Score=172.11  Aligned_cols=123  Identities=39%  Similarity=0.732  Sum_probs=113.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|+++|+.+++.+++++|++|+|||++++.+|+.+..|+..+.... .+.|++||+||.||...+
T Consensus        48 i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~  126 (189)
T cd04121          48 ILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKR  126 (189)
T ss_pred             EEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhcc
Confidence            5678999999999999999999999999999999999999999999999999999997765 579999999999997777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .++.++++.++...++++++|||++|.|++++|++|.+.+..+.
T Consensus       127 ~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~  170 (189)
T cd04121         127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH  170 (189)
T ss_pred             CCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence            78899999999999999999999999999999999999887543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=7.6e-28  Score=164.48  Aligned_cols=131  Identities=35%  Similarity=0.666  Sum_probs=121.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+||++|.++.+.||++++++++|||.+|..||..+++|+.++.......+-++||+||+||.+++
T Consensus        55 ~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR  134 (218)
T KOG0088|consen   55 VNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER  134 (218)
T ss_pred             cccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh
Confidence            56788899999999999999999999999999999999999999999999999999988876678899999999999999


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDV  132 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~  132 (165)
                      +++..++..++..-|..|+++||+++.||.++|+.|....++.....+...
T Consensus       135 ~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~  185 (218)
T KOG0088|consen  135 QVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTR  185 (218)
T ss_pred             hhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhccccc
Confidence            999999999999999999999999999999999999998888776655444

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=7.9e-28  Score=162.62  Aligned_cols=124  Identities=43%  Similarity=0.756  Sum_probs=119.0

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      |+.|+|..+.+++|||+|+++|+.+...|+++.+++++|||+++.+||.....|+..+...+ ..+|-++|+||.|+++.
T Consensus        49 Tv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~R  127 (198)
T KOG0079|consen   49 TVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPER  127 (198)
T ss_pred             EeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccc
Confidence            57899999999999999999999999999999999999999999999999999999999998 57899999999999888


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      +.+..++++.++...++.++|+||+.+.|++..|..|.++++..+
T Consensus       128 rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  128 RVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             eeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999998866

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=6.2e-27  Score=169.26  Aligned_cols=146  Identities=38%  Similarity=0.652  Sum_probs=123.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~   78 (165)
                      +.+++..+.+++|||+|+++|..++..+++++|++|+|||+++..+++.+..|+..+.....   .+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~  119 (190)
T cd04144          40 VVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV  119 (190)
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence            35778889999999999999999999999999999999999999999999999988876542   468999999999997


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCC
Q 031132           79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSS  158 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (165)
                      ....+...+...++..++++++++||++|.|++++|+++++.+.++...+.                  +|...+...+.
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~------------------~~~~~~~~~~~  181 (190)
T cd04144         120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ------------------GPKGGPTKKKE  181 (190)
T ss_pred             ccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccC------------------CCcCCCCCccc
Confidence            666777777788888889999999999999999999999998876666542                  11222466677


Q ss_pred             CCCCCCC
Q 031132          159 QAGGCCS  165 (165)
Q Consensus       159 ~~~~c~~  165 (165)
                      +.++|||
T Consensus       182 ~~~~~~~  188 (190)
T cd04144         182 KKKRKCV  188 (190)
T ss_pred             ccccCce
Confidence            8888886

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=6e-28  Score=165.23  Aligned_cols=125  Identities=46%  Similarity=0.775  Sum_probs=117.6

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      .|.++|..+.+.+|||+||++|+.+.+.||++|.++|+|||++.+++|..+..|++++..++. +++-.++|+||.|...
T Consensus        52 ~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes  131 (209)
T KOG0080|consen   52 VMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES  131 (209)
T ss_pred             EEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence            378999999999999999999999999999999999999999999999999999999998886 6677889999999877


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ++.++.++...++.++++-++|+||++.+|+...|+.++..|++.-
T Consensus       132 ~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  132 ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence            8889999999999999999999999999999999999999998743

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.95  E-value=6.1e-27  Score=170.68  Aligned_cols=154  Identities=36%  Similarity=0.622  Sum_probs=123.6

Q ss_pred             eeeC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCC
Q 031132            2 ITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCD   76 (165)
Q Consensus         2 ~~i~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D   76 (165)
                      +.++ +..+.+.+|||+|+++++.+++.+++++|++|+|||++++.+|+.+..|+..+.....    .++|++||+||+|
T Consensus        42 v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~D  121 (201)
T cd04107          42 IEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCD  121 (201)
T ss_pred             EEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCC
Confidence            3455 7788999999999999999999999999999999999999999999999988765421    4689999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCC
Q 031132           77 LAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDG  155 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (165)
                      +.....+..+++..++...+ ..++++||++|.|++++|++|.+.+++.......+.+...    .......     +..
T Consensus       122 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~-----~~~  192 (201)
T cd04107         122 LKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPED----GSVIDLK-----QTT  192 (201)
T ss_pred             cccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCc----ccccccc-----cce
Confidence            97556678888889999888 6899999999999999999999998876544433332211    1111111     466


Q ss_pred             CCCCCCCCC
Q 031132          156 SSSQAGGCC  164 (165)
Q Consensus       156 ~~~~~~~c~  164 (165)
                      +..++++||
T Consensus       193 ~~~~~~~~~  201 (201)
T cd04107         193 TKKKSKGCC  201 (201)
T ss_pred             eccccCCCC
Confidence            777788898

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=2.6e-26  Score=168.68  Aligned_cols=158  Identities=46%  Similarity=0.789  Sum_probs=125.9

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      ++..+.+++|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+..... ...|++||+||+|+.+...+
T Consensus        48 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v  127 (211)
T cd04111          48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV  127 (211)
T ss_pred             CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc
Confidence            46778999999999999999999999999999999999999999999999999876654 45788999999999776778


Q ss_pred             CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeecc----CC-CCCCCCCCCCCCC
Q 031132           84 STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGY----GG-IPGPSGGRDGSSS  158 (165)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~  158 (165)
                      ..++...++..++++++++||++|+|++++|++|.+.+.++..+..+.......+.+.+.    +- ++-+   .-++.+
T Consensus       128 ~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  204 (211)
T cd04111         128 TREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEER---SPTFAS  204 (211)
T ss_pred             CHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcc---cccccC
Confidence            888888899999999999999999999999999999998887666534333332222221    11 1111   123455


Q ss_pred             CCCCCCC
Q 031132          159 QAGGCCS  165 (165)
Q Consensus       159 ~~~~c~~  165 (165)
                      -.++|||
T Consensus       205 ~~~~~~~  211 (211)
T cd04111         205 PEKSCCC  211 (211)
T ss_pred             CCCCCCC
Confidence            6788998

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.95  E-value=5.4e-26  Score=167.57  Aligned_cols=131  Identities=50%  Similarity=0.872  Sum_probs=116.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|++++..++..++++++++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus        54 v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~  133 (216)
T PLN03110         54 LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR  133 (216)
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc
Confidence            56788899999999999999999999999999999999999999999999999998887755579999999999997767


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDV  132 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~  132 (165)
                      .+..++.+.++...+++++++||++|.|++++|++|...+.+....+....
T Consensus       134 ~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~~~~  184 (216)
T PLN03110        134 SVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAA  184 (216)
T ss_pred             CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccc
Confidence            777888888888889999999999999999999999999988665544333

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.95  E-value=5.7e-26  Score=168.69  Aligned_cols=125  Identities=27%  Similarity=0.535  Sum_probs=111.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-   79 (165)
                      +.+++..+.++||||+|+++|..+++.+++++|++|+|||++++.+|+. +..|+..+.... .+.|++||+||+||.. 
T Consensus        54 i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~  132 (232)
T cd04174          54 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTD  132 (232)
T ss_pred             EEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc
Confidence            4678999999999999999999999999999999999999999999998 478999888765 5789999999999853 


Q ss_pred             -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCC-CHHHHHHHHHHHHHHHHhc
Q 031132           80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQ-NVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~-~i~~l~~~l~~~i~~~~~~  127 (165)
                                 ...++.++++.++..+++ .|++|||++|+ |++++|..+...++++..+
T Consensus       133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         133 LSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             cchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence                       256888899999999998 59999999998 8999999999998876555

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-26  Score=158.09  Aligned_cols=151  Identities=35%  Similarity=0.595  Sum_probs=127.5

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +..+.+++|||+||++|+++...++++|-+++++||.++..||-.+++|+..+..+.- .+..+++.+||+||.+.+.++
T Consensus        64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs  143 (219)
T KOG0081|consen   64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS  143 (219)
T ss_pred             ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence            5678899999999999999999999999999999999999999999999999976654 567799999999999989999


Q ss_pred             HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCC-CCCCCCCCCCCCCCCCCC
Q 031132           85 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGG-IPGPSGGRDGSSSQAGGC  163 (165)
Q Consensus        85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c  163 (165)
                      ..++..++.++++||+|+||-+|.|+++..+.++..++++.++- .+.+.-+.+...++-+ .      ....+.+++-|
T Consensus       144 ~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~-v~~s~~p~~~~~~~~g~~------~~e~~~~~~~c  216 (219)
T KOG0081|consen  144 EDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQC-VEKSEIPLLVTRSNCGHL------DGEEPCERKNC  216 (219)
T ss_pred             HHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHH-HhhcccchhhhccccccC------CCCCChhhhcc
Confidence            99999999999999999999999999999999999999987764 3444445555444421 1      23445555666

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=2e-26  Score=160.97  Aligned_cols=126  Identities=35%  Similarity=0.662  Sum_probs=115.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL   77 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl   77 (165)
                      +.||++.+++++|||+||++|.++.-.+|++||.+++|||+++..||+.+..|..++..+..    ...|+||++||.|+
T Consensus        51 v~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~  130 (210)
T KOG0394|consen   51 VQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV  130 (210)
T ss_pred             EEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence            67999999999999999999999999999999999999999999999999999999988876    35899999999999


Q ss_pred             CC--CCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           78 AH--RRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      .+  .++++...++.++... ++||+|+||+...|+.++|..+....+.....
T Consensus       131 ~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  131 DGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             CCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence            65  2688999999999876 58899999999999999999999998886644

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=7.6e-26  Score=161.86  Aligned_cols=122  Identities=43%  Similarity=0.725  Sum_probs=110.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.++++.+.+.||||+|++++..++..++++||++|+|||++++.+|+.+..|+..+......+.|++||+||+||....
T Consensus        22 ~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~  101 (176)
T PTZ00099         22 LYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR  101 (176)
T ss_pred             EEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence            56789999999999999999999999999999999999999999999999999998876654578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+...++..++..++..++++||++|.|++++|++|...+.+
T Consensus       102 ~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        102 KVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            678888888888888899999999999999999999988755

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.4e-26  Score=156.43  Aligned_cols=124  Identities=44%  Similarity=0.807  Sum_probs=117.0

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +.+.+.+++|||+|+++|+.+...++++|+++|++||.++.+||+.+..|.-.+..++-.+.|+++++||||+..++.++
T Consensus        66 ~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis  145 (193)
T KOG0093|consen   66 SDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVIS  145 (193)
T ss_pred             cccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeee
Confidence            45678999999999999999999999999999999999999999999999999988877789999999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           85 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .+.++.++.++|+.++|+||+.+.|++++|+.++..|.+...++
T Consensus       146 ~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  146 HERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999876553

>cd04110 Rab35 Rab35 subfamily

Probab=99.94  E-value=2.6e-25  Score=161.91  Aligned_cols=127  Identities=41%  Similarity=0.733  Sum_probs=113.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.++..+..|+..+.... ...|++||+||+|+....
T Consensus        48 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~  126 (199)
T cd04110          48 VEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERK  126 (199)
T ss_pred             EEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccccc
Confidence            3456888899999999999999999999999999999999999999999999999887665 568999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      .+...+...++...+++++++||++|.|++++|++|...++.....+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~  174 (199)
T cd04110         127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNL  174 (199)
T ss_pred             ccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccC
Confidence            677788888888889999999999999999999999999988766553

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04126 Rab20 Rab20 subfamily

Probab=99.94  E-value=1.7e-25  Score=165.13  Aligned_cols=124  Identities=32%  Similarity=0.507  Sum_probs=108.7

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC------
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH------   79 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------   79 (165)
                      .+.+.+.+|||+|+++|..+++.+++++|++|+|||++++.+|+.+..|+..+......+.|++||+||+||.+      
T Consensus        41 ~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~  120 (220)
T cd04126          41 WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAG  120 (220)
T ss_pred             eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccc
Confidence            35678999999999999999999999999999999999999999999988887765445789999999999965      


Q ss_pred             -------------CCCCCHHHHHHHHHHcC--------------CeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           80 -------------RRAVSTEEGEQFAKEHG--------------LIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        80 -------------~~~~~~~~~~~~~~~~~--------------~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                                   .+.+..+++..++...+              ++|+||||++|.|++++|..+.+.++.......
T Consensus       121 ~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~  197 (220)
T cd04126         121 QEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR  197 (220)
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence                         45677888999998876              689999999999999999999999887655544

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04112 Rab26 Rab26 subfamily

Probab=99.94  E-value=2.7e-25  Score=160.83  Aligned_cols=124  Identities=48%  Similarity=0.823  Sum_probs=111.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......++|+++++||+|+....
T Consensus        43 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~  122 (191)
T cd04112          43 VTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER  122 (191)
T ss_pred             EEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence            46788889999999999999999999999999999999999999999999999999887754578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .+...+...++..++++++++||++|.|++++|.+|.+.+....
T Consensus       123 ~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         123 VVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK  166 (191)
T ss_pred             ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            67777888888888999999999999999999999999987664

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.94  E-value=1.8e-25  Score=159.30  Aligned_cols=125  Identities=33%  Similarity=0.545  Sum_probs=112.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|+++++.++..+++++|++++|||++++.+|+.+..|+..+..... .++|+++|+||+|+...
T Consensus        43 ~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~  122 (172)
T cd04141          43 ARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ  122 (172)
T ss_pred             EEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence            56789999999999999999999999999999999999999999999999998888776543 57999999999999776


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ..++.++...++...++++++|||++|.|++++|++|...+.+...
T Consensus       123 ~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~  168 (172)
T cd04141         123 RQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKES  168 (172)
T ss_pred             CccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhcc
Confidence            7788888888998889999999999999999999999998876443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.94  E-value=1.1e-25  Score=161.89  Aligned_cols=120  Identities=28%  Similarity=0.569  Sum_probs=108.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-   79 (165)
                      +.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.... ++.|++||+||+||.+ 
T Consensus        46 ~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~  124 (182)
T cd04172          46 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD  124 (182)
T ss_pred             EEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcC
Confidence            56889999999999999999999999999999999999999999999997 78999988765 5789999999999853 


Q ss_pred             -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCC-HHHHHHHHHHHHH
Q 031132           80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQN-VEEAFIKTAATIY  122 (165)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~l~~~l~~~i~  122 (165)
                                 ...++.+++..++..+++ +|+||||++|.| ++++|..++..++
T Consensus       125 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         125 LTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             hhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence                       245888999999999996 899999999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04125 RabA_like RabA-like subfamily

Probab=99.94  E-value=4.8e-25  Score=158.96  Aligned_cols=128  Identities=44%  Similarity=0.739  Sum_probs=115.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.++++.+.+++|||+|++++..++..+++++|++|+|||++++.++..+..|+..+........|+++++||+|+.+..
T Consensus        42 ~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~  121 (188)
T cd04125          42 VYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK  121 (188)
T ss_pred             EEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence            46778889999999999999999999999999999999999999999999999999887654568999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      .+.......++...+++++++||++|.|++++|.+|.+.+.++....+
T Consensus       122 ~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~  169 (188)
T cd04125         122 VVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE  169 (188)
T ss_pred             cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            677778888888888999999999999999999999999988766654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=1.7e-26  Score=153.85  Aligned_cols=126  Identities=48%  Similarity=0.837  Sum_probs=117.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.++++++.+++|||+||++|++....||++||+++++||..++.||+....|+..+..+....+.+.+++||+|+..++
T Consensus        40 i~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er  119 (192)
T KOG0083|consen   40 IDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER  119 (192)
T ss_pred             eccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh
Confidence            57899999999999999999999999999999999999999999999999999999998876678899999999997778


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      .+..++...+++.+++|++++||++|.|++-.|-.|.+.+.++...
T Consensus       120 ~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~~  165 (192)
T KOG0083|consen  120 AVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKMG  165 (192)
T ss_pred             ccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhccC
Confidence            8888999999999999999999999999999999999988776554

>cd01875 RhoG RhoG subfamily

Probab=99.94  E-value=2.6e-25  Score=161.01  Aligned_cols=121  Identities=24%  Similarity=0.548  Sum_probs=106.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.++++.+.+++|||+|+++|+.+++.+++++|++|+|||++++.||+.+. .|+..+.... .++|++||+||.||.+.
T Consensus        44 ~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~  122 (191)
T cd01875          44 TAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND  122 (191)
T ss_pred             EEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcC
Confidence            467899999999999999999999999999999999999999999999997 5877776554 57999999999999543


Q ss_pred             ------------CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                                  ..+..+++..++..++ ++++++||++|+|++++|.++.+.++.
T Consensus       123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             hhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence                        2356678888888888 589999999999999999999998865

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04122 Rab14 Rab14 subfamily

Probab=99.94  E-value=4.5e-25  Score=155.94  Aligned_cols=122  Identities=65%  Similarity=1.055  Sum_probs=111.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus        44 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~  123 (166)
T cd04122          44 IEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR  123 (166)
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            45788899999999999999999999999999999999999999999999999998876654678999999999997777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+..++...++...+++++++||++|.|+.++|.++...+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         124 DVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            778888888888889999999999999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04133 Rop_like Rop subfamily

Probab=99.94  E-value=2e-25  Score=159.73  Aligned_cols=120  Identities=32%  Similarity=0.654  Sum_probs=107.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|+++|+.+++.+++++|++|+|||++++.||+.+ ..|+..+.... .+.|++||+||+||.+.
T Consensus        42 ~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~  120 (176)
T cd04133          42 VSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDD  120 (176)
T ss_pred             EEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccC
Confidence            46789999999999999999999999999999999999999999999998 68999887665 57999999999999543


Q ss_pred             C----------CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 R----------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~----------~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .          .+..+++..++...++ .++||||++|.|++++|+.+.+.++
T Consensus       121 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         121 KQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             hhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence            2          4778889999999998 5999999999999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.94  E-value=1.3e-24  Score=160.60  Aligned_cols=125  Identities=25%  Similarity=0.535  Sum_probs=107.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.||||+|++.|..+++.+++++|++|+|||++++.+|+.+. .|...+.... .+.|++||+||+||...
T Consensus        42 ~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~  120 (222)
T cd04173          42 FEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTD  120 (222)
T ss_pred             EEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccc
Confidence            568899999999999999999999999999999999999999999999985 4666555544 67999999999999542


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCC-HHHHHHHHHHHHHHHHhc
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQN-VEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~l~~~l~~~i~~~~~~  127 (165)
                                  ..++.+++..++...+. +|+||||++++| ++++|+.+....+.+...
T Consensus       121 ~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         121 LATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             hhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCC
Confidence                        13677889999999995 899999999985 999999999988775543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04109 Rab28 Rab28 subfamily

Probab=99.94  E-value=8.5e-25  Score=161.03  Aligned_cols=118  Identities=32%  Similarity=0.538  Sum_probs=106.9

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCCC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      ..+.+++|||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+.....   .+.|+++|+||+|+.....+
T Consensus        48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v  127 (215)
T cd04109          48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV  127 (215)
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence            578999999999999999999999999999999999999999999999999877643   34689999999999766777


Q ss_pred             CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           84 STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ..++...++..++++++++||++|+|++++|++|...+...
T Consensus       128 ~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         128 KDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            88888888988999999999999999999999999998874

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.4e-25  Score=148.15  Aligned_cols=139  Identities=62%  Similarity=1.018  Sum_probs=127.4

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +|.+.|+++.+++|||+|+++|+...+.|++++.+.++|||.+.+.+++.+..|+.......+++.-+++++||.||...
T Consensus        52 iievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q  131 (215)
T KOG0097|consen   52 IIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ  131 (215)
T ss_pred             EEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc
Confidence            36789999999999999999999999999999999999999999999999999999988887778889999999999988


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcce
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGI  139 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~  139 (165)
                      +.++-++...++++.|+-++++||++|.|+++.|-...++|.+...++-++...--.+.
T Consensus       132 rdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdgsldlnaaesgv  190 (215)
T KOG0097|consen  132 RDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDLNAAESGV  190 (215)
T ss_pred             ccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCcccccchhccC
Confidence            89999999999999999999999999999999999999999998888776655544444

>cd04131 Rnd Rnd subfamily

Probab=99.93  E-value=5.7e-25  Score=157.64  Aligned_cols=120  Identities=30%  Similarity=0.577  Sum_probs=107.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-   79 (165)
                      +.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.... ++.|++||+||+||.+ 
T Consensus        42 ~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~  120 (178)
T cd04131          42 FEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTD  120 (178)
T ss_pred             EEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcC
Confidence            56789999999999999999999999999999999999999999999996 78999888776 5789999999999853 


Q ss_pred             -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCC-HHHHHHHHHHHHH
Q 031132           80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQN-VEEAFIKTAATIY  122 (165)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~l~~~l~~~i~  122 (165)
                                 ...++.+++..++..+++ +++||||++|+| ++++|..+.+..+
T Consensus       121 ~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         121 LSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             hhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence                       235788899999999997 799999999995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00369 Ras-like protein; Provisional

Probab=99.93  E-value=1e-24  Score=157.47  Aligned_cols=126  Identities=40%  Similarity=0.654  Sum_probs=112.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|+++|..++..+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+.+.
T Consensus        46 ~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~  125 (189)
T PTZ00369         46 CVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE  125 (189)
T ss_pred             EEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            46889999999999999999999999999999999999999999999999999988876543 57899999999999766


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ..+...+...++..++++++++||++|.|+.++|.+|.+.+.+...+
T Consensus       126 ~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~  172 (189)
T PTZ00369        126 RQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE  172 (189)
T ss_pred             cccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            66777777788888889999999999999999999999988765443

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2e-25  Score=151.36  Aligned_cols=126  Identities=46%  Similarity=0.788  Sum_probs=116.5

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      |+.++|+++.+++|||+|+++|+++...||+.|+++|+|||.+..++|+-+..|+.++..+.+..+..++|+||.|+.+.
T Consensus        48 tvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr  127 (213)
T KOG0095|consen   48 TVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR  127 (213)
T ss_pred             EEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence            57899999999999999999999999999999999999999999999999999999999998877888999999999888


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ++++......+.......++++||+..+|++.+|..+.-.++....
T Consensus       128 revp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar  173 (213)
T KOG0095|consen  128 REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEAR  173 (213)
T ss_pred             hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence            8888888888988888889999999999999999999887766433

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.93  E-value=4.1e-24  Score=151.25  Aligned_cols=122  Identities=54%  Similarity=0.925  Sum_probs=110.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++++|||+++..++..+..|+..+......+.|+++++||+|+.+..
T Consensus        45 ~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~  124 (167)
T cd01867          45 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR  124 (167)
T ss_pred             EEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence            45688889999999999999999999999999999999999999999999999999887654678999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+..++...++..++++++++||++|.|++++|.++.+++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         125 VVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            677778888888889999999999999999999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04127 Rab27A Rab27a subfamily

Probab=99.93  E-value=3.2e-24  Score=153.33  Aligned_cols=119  Identities=40%  Similarity=0.714  Sum_probs=108.0

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +..+.+++|||+|++++..++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+.
T Consensus        60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~  139 (180)
T cd04127          60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS  139 (180)
T ss_pred             CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence            5678899999999999999999999999999999999999999999999998876543 478999999999997766778


Q ss_pred             HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           85 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .++...++...+++++++||++|.|++++|++|.+.++++
T Consensus       140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            8888899999999999999999999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.93  E-value=3.6e-24  Score=156.03  Aligned_cols=120  Identities=31%  Similarity=0.608  Sum_probs=105.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.++++.+.+++|||+|+++|..+++.+++++|++|+|||+++..+++.+..|+..+.... .++|+++|+||+|+.. .
T Consensus        37 ~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~  114 (200)
T smart00176       37 FHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-R  114 (200)
T ss_pred             EEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-c
Confidence            4567889999999999999999999999999999999999999999999999999998775 5799999999999854 3


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .+..+. ..++...++.+++|||++|.|++++|++|...+.+.
T Consensus       115 ~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      115 KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            344443 356777889999999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04118 Rab24 Rab24 subfamily

Probab=99.93  E-value=8.6e-24  Score=152.86  Aligned_cols=125  Identities=34%  Similarity=0.620  Sum_probs=108.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+.... .+.|+++|+||+|+... 
T Consensus        43 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~  121 (193)
T cd04118          43 MVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQD  121 (193)
T ss_pred             EEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccc
Confidence            5678888999999999999999999999999999999999999999999999998887653 47899999999998532 


Q ss_pred             ---CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           81 ---RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                         ..+...++..++...+.+++++||+++.|++++|+++.+.+.++..+
T Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~  171 (193)
T cd04118         122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANN  171 (193)
T ss_pred             cccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence               23455667777788889999999999999999999999999876543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04136 Rap_like Rap-like subfamily

Probab=99.93  E-value=2.6e-24  Score=151.09  Aligned_cols=120  Identities=39%  Similarity=0.647  Sum_probs=106.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..+++.+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  121 (163)
T cd04136          42 IEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE  121 (163)
T ss_pred             EEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            56788899999999999999999999999999999999999999999999999988876643 57899999999999765


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..+...+...++..++.+++++||++|.|++++|+++.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         122 RVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            56667777777888888999999999999999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.93  E-value=5.3e-24  Score=150.29  Aligned_cols=122  Identities=53%  Similarity=0.918  Sum_probs=110.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++||++|++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++++||+|+....
T Consensus        44 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~  123 (166)
T cd01869          44 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR  123 (166)
T ss_pred             EEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence            45678889999999999999999999999999999999999999999999999999877654578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+...++..++...+++++++||++|+|++++|.+|.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869         124 VVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK  165 (166)
T ss_pred             CCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            777788888888889999999999999999999999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01865 Rab3 Rab3 subfamily

Probab=99.92  E-value=5.9e-24  Score=150.18  Aligned_cols=121  Identities=45%  Similarity=0.790  Sum_probs=108.2

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ..+++.+.+++|||+|++++..++..+++++|++++|||+++..+++.+..|+..+........|+++++||+|+.+...
T Consensus        44 ~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~  123 (165)
T cd01865          44 FRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERV  123 (165)
T ss_pred             EECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccc
Confidence            45677889999999999999999999999999999999999999999999999998776545789999999999976666


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +..++...++..++++++++||++|.|+.++|+++...+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         124 VSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            67777888888889999999999999999999999887643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=99.92  E-value=6.4e-24  Score=149.61  Aligned_cols=119  Identities=41%  Similarity=0.772  Sum_probs=108.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++||++|++++..++..+++++|++++|||+++..+|+.+..|+..+......+.|+++|+||.|+....
T Consensus        42 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  121 (161)
T cd04117          42 IEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR  121 (161)
T ss_pred             EEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            45677888999999999999999999999999999999999999999999999998877654578999999999997777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .+...+...+++..+.+++++||++|.|++++|.+|.+.
T Consensus       122 ~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         122 QVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            778888899998889999999999999999999999764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04175 Rap1 Rap1 subgroup

Probab=99.92  E-value=4.8e-24  Score=150.26  Aligned_cols=121  Identities=36%  Similarity=0.633  Sum_probs=107.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  121 (164)
T cd04175          42 VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE  121 (164)
T ss_pred             EEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence            45788899999999999999999999999999999999999999999999999998876543 57899999999999766


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..+...+...++...+++++++||++|.|++++|.++.+++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence            666667777788888899999999999999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.92  E-value=3e-24  Score=155.97  Aligned_cols=115  Identities=25%  Similarity=0.475  Sum_probs=101.5

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH--   79 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~--   79 (165)
                      .+++..+.+++|||+|++.  .+.+.+++++|++|+|||++++.||+.+. .|+..+.... .+.|+++|+||+||..  
T Consensus        60 ~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~  136 (195)
T cd01873          60 VVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYAD  136 (195)
T ss_pred             eeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccc
Confidence            5789999999999999975  35667899999999999999999999997 5888887665 4789999999999853  


Q ss_pred             -----------------CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           80 -----------------RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        80 -----------------~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                                       .+.++.++++.++..++++|+||||++|.|++++|+.++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                             35678889999999999999999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.92  E-value=9.6e-24  Score=148.25  Aligned_cols=121  Identities=41%  Similarity=0.795  Sum_probs=113.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++||++|+++|..++..+++++|++|+|||++++.|++.+..|+..+......+.|++|++||.|+...+
T Consensus        41 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~  120 (162)
T PF00071_consen   41 VSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER  120 (162)
T ss_dssp             EEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            57889999999999999999999999999999999999999999999999999999998875568999999999998778


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .++.++++.++..++.+++++||+++.|+.++|..+++.+.
T Consensus       121 ~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  121 EVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             SSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.92  E-value=6e-24  Score=151.88  Aligned_cols=119  Identities=23%  Similarity=0.511  Sum_probs=103.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.++++.+.+++|||+|+++|..++..+++++|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+...
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~  120 (175)
T cd01874          42 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             EEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhC
Confidence            456788899999999999999999999999999999999999999999997 4887776654 57899999999998543


Q ss_pred             ------------CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                                  +.+..+++..++...+ +.++++||++|.|++++|+.++...
T Consensus       121 ~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             hhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence                        4567777888888877 6899999999999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03118 Rab family protein; Provisional

Probab=99.92  E-value=3.7e-23  Score=151.85  Aligned_cols=123  Identities=50%  Similarity=0.816  Sum_probs=106.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.||||+|++++..++..+++++|++|+|||+++..++..+.. |...+..... .+.|+++|+||+|+..
T Consensus        55 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~  134 (211)
T PLN03118         55 LTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES  134 (211)
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            4567888999999999999999999999999999999999999999999876 4454443332 4679999999999976


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ...+..++...++...+++++++||+++.|++++|++|.+.+...
T Consensus       135 ~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        135 ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            666777778788888899999999999999999999999998764

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.92  E-value=1.9e-23  Score=150.25  Aligned_cols=122  Identities=32%  Similarity=0.554  Sum_probs=106.2

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCC----
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR----   80 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~----   80 (165)
                      +..+.+++|||+|++++..+++.+++++|++|+|||+++..+|+.+.. |+..+.... .+.|+++|+||+|+...    
T Consensus        46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~  124 (187)
T cd04132          46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLD  124 (187)
T ss_pred             CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCcccc
Confidence            678899999999999999999999999999999999999999998864 777776544 57899999999998543    


Q ss_pred             CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           81 RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      ..+...+...++...++ +++++||++|.|+.++|..+.+.+.......
T Consensus       125 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~  173 (187)
T cd04132         125 RKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKA  173 (187)
T ss_pred             CCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            24567788888888888 8999999999999999999999998766553

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.92  E-value=2.2e-23  Score=146.68  Aligned_cols=121  Identities=33%  Similarity=0.677  Sum_probs=108.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-----CCCeEEEEeeCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-----ANMTIMLIGNKCD   76 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~D   76 (165)
                      +.+++..+.+++|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+.....     .+.|+++|+||+|
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D  121 (168)
T cd04119          42 VSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID  121 (168)
T ss_pred             EEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence            45678889999999999999999999999999999999999999999999999999877653     3689999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +.++..+..++...++...+++++++||++|+|+.++|++|++.++
T Consensus       122 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             cccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9755567778888888888899999999999999999999998876

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04176 Rap2 Rap2 subgroup

Probab=99.92  E-value=1.3e-23  Score=147.84  Aligned_cols=120  Identities=35%  Similarity=0.588  Sum_probs=105.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|+++|..++..+++++|++++|||+++..+++.+..|+..+..... .++|+++++||+|+...
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~  121 (163)
T cd04176          42 IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE  121 (163)
T ss_pred             EEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence            56788889999999999999999999999999999999999999999999999988876643 57899999999999665


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..+...+...++...+++++++||+++.|+.++|.++.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            56666667777777788999999999999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04128 Spg1 Spg1p

Probab=99.92  E-value=1.7e-23  Score=150.50  Aligned_cols=121  Identities=26%  Similarity=0.480  Sum_probs=103.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-   80 (165)
                      +.+++..+.+++|||+|+++|..+++.+++++|++++|||++++.+++.+..|+..+........| ++|+||+|+... 
T Consensus        42 i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~  120 (182)
T cd04128          42 ISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL  120 (182)
T ss_pred             EEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence            567888999999999999999999999999999999999999999999999999988776434566 678999998421 


Q ss_pred             ----CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 ----RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ----~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                          ......+...++..++.+++++||++|.|++++|+++.+.+.+
T Consensus       121 ~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             cchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                1112345667788888999999999999999999999998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.92  E-value=1.5e-23  Score=149.68  Aligned_cols=118  Identities=29%  Similarity=0.582  Sum_probs=103.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++.|..+++.+++++|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~  120 (174)
T cd01871          42 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD  120 (174)
T ss_pred             EEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccC
Confidence            467888999999999999999999999999999999999999999999996 5877776654 57999999999999532


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                                  ..+..+++..++..++. +++++||++|+|++++|+.+...
T Consensus       121 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             hhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence                        24677888889988884 89999999999999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01868 Rab11_like Rab11-like

Probab=99.91  E-value=4e-23  Score=145.59  Aligned_cols=120  Identities=58%  Similarity=0.956  Sum_probs=108.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++||++|++++..+++.++++++++|+|||+++..++..+..|+..+......+.|+++|+||+|+....
T Consensus        45 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~  124 (165)
T cd01868          45 IQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR  124 (165)
T ss_pred             EEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            45678888999999999999999999999999999999999999999999999999887764568999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+..++...++...+++++++||++|.|++++|+++...+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         125 AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            6777788888888889999999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04134 Rho3 Rho3 subfamily

Probab=99.91  E-value=2e-23  Score=150.86  Aligned_cols=121  Identities=33%  Similarity=0.609  Sum_probs=103.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++.|..+++.+++++|++|+|||+++..+|+.+. .|+..+.... .+.|+++|+||+|+...
T Consensus        41 i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~  119 (189)
T cd04134          41 IFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREA  119 (189)
T ss_pred             EEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence            457888899999999999999999999999999999999999999999886 5888887654 57899999999999643


Q ss_pred             C------------CCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 R------------AVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~------------~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .            .+..++...++...+ ++++++||++|.|++++|.+|.+.++.
T Consensus       120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         120 RNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             hhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            2            244556677777776 689999999999999999999998873

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.91  E-value=6.1e-23  Score=145.43  Aligned_cols=122  Identities=87%  Similarity=1.264  Sum_probs=110.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++++|||++++.+++.+..|+..+......+.|+++++||.|+....
T Consensus        46 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~  125 (168)
T cd01866          46 ITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR  125 (168)
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence            45788889999999999999999999999999999999999999999999999999877655679999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+..++...++...+++++++||+++.|++++|.++.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         126 EVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            677888888888889999999999999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.91  E-value=4.2e-23  Score=145.23  Aligned_cols=121  Identities=43%  Similarity=0.683  Sum_probs=107.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..+++.+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus        41 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~  120 (164)
T smart00173       41 IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE  120 (164)
T ss_pred             EEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            45788889999999999999999999999999999999999999999999999888876543 47899999999999765


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..+.......++...+.+++++||++|.|++++|++|++.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      121 RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             ceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            666777788888888999999999999999999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.91  E-value=5.2e-23  Score=144.58  Aligned_cols=120  Identities=36%  Similarity=0.592  Sum_probs=106.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..+++.+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus        43 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          43 CEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ  122 (164)
T ss_pred             EEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence            35788889999999999999999999999999999999999999999999999988876543 57899999999999765


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..+...+...++...+++++++||++|.|++++|++|...+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         123 RKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            56667777788888889999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.91  E-value=2.3e-23  Score=147.96  Aligned_cols=121  Identities=30%  Similarity=0.592  Sum_probs=105.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|+++|..+++.+++++|++|+|||+++..+|+.+. .|+..+.... .+.|+++|+||+|+...
T Consensus        39 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~  117 (174)
T smart00174       39 VEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLRED  117 (174)
T ss_pred             EEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhC
Confidence            467888999999999999999999999999999999999999999999986 4888887654 57999999999998542


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                                  ..++.++...++...+. +++++||++|.|++++|+.+.+.+++
T Consensus       118 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      118 KSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             hhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence                        23667777888888886 89999999999999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.91  E-value=3.8e-23  Score=152.71  Aligned_cols=119  Identities=31%  Similarity=0.563  Sum_probs=104.0

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .++++.+.+.+|||+|+++|..++..+++++|++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.. ..
T Consensus        56 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~  133 (219)
T PLN03071         56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ  133 (219)
T ss_pred             EECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-cc
Confidence            456778999999999999999999999999999999999999999999999999998765 5799999999999853 33


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      +..... .++...+++++++||++|.|++++|.+|.+.+.+.
T Consensus       134 v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        134 VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            444444 66677789999999999999999999999988754

>cd04113 Rab4 Rab4 subfamily

Probab=99.91  E-value=6.9e-23  Score=143.83  Aligned_cols=120  Identities=61%  Similarity=0.984  Sum_probs=108.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++||++|++++..+++.+++++|++++|||++++.++..+..|+..+......+.|+++++||+|+....
T Consensus        42 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  121 (161)
T cd04113          42 IRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR  121 (161)
T ss_pred             EEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence            46778889999999999999999999999999999999999999999999999998876655689999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+...+...++...+++++++||+++.|+.++|+++.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         122 EVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            6778888888888999999999999999999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.91  E-value=9.4e-23  Score=143.15  Aligned_cols=122  Identities=64%  Similarity=0.982  Sum_probs=110.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.++++.+.+.+||++|++++..++..+++.+|++++|||++++.+++.+..|+..+......++|+++++||+|+....
T Consensus        42 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~  121 (164)
T smart00175       42 IEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR  121 (164)
T ss_pred             EEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence            45778888999999999999999999999999999999999999999999999999887765679999999999987656


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+..+.+..++...+++++++||.++.|++++|++|.+.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      122 QVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             CCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            677788888888889999999999999999999999998764

Rab GTPases are implicated in vesicle trafficking.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.91  E-value=1.3e-22  Score=144.37  Aligned_cols=122  Identities=34%  Similarity=0.639  Sum_probs=104.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|+++|..++..+++++|++++|||+++..++..+..|+..+.+... ...|+++|+||.|+...
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~  121 (170)
T cd04108          42 FEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP  121 (170)
T ss_pred             EEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence            45678889999999999999999999999999999999999999999999999998865532 35789999999998544


Q ss_pred             CC--CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 RA--VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~--~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..  ....+...++.+++.+++++||++|.|++++|+.|...+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         122 AQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             ccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            33  23556667777888899999999999999999999887754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.91  E-value=1.6e-22  Score=141.45  Aligned_cols=119  Identities=39%  Similarity=0.677  Sum_probs=104.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|+++++.++..+++++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.. 
T Consensus        42 ~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-  120 (162)
T cd04138          42 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-  120 (162)
T ss_pred             EEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-
Confidence            45788888899999999999999999999999999999999999999999999988877653 5789999999999864 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ......+...++...+++++++||++|.|++++|+++.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         121 RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            34556677777888889999999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04124 RabL2 RabL2 subfamily

Probab=99.90  E-value=1.4e-22  Score=142.65  Aligned_cols=119  Identities=32%  Similarity=0.563  Sum_probs=103.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.+++.+..|+..+.... .+.|+++++||+|+... 
T Consensus        42 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~-  119 (161)
T cd04124          42 AKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS-  119 (161)
T ss_pred             EEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh-
Confidence            3567889999999999999999999999999999999999999999999999999887654 47899999999998431 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                        ...+...++...+++++++||++|.|++++|+.+.+.+..+
T Consensus       120 --~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         120 --VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             --HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence              23345556667788999999999999999999999888764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04140 ARHI_like ARHI subfamily

Probab=99.90  E-value=1.5e-22  Score=142.94  Aligned_cols=118  Identities=36%  Similarity=0.525  Sum_probs=103.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~   78 (165)
                      +..++..+.+++|||+|++++..++..+++.+|++|+|||+++..+++.+..|+..+.....   .+.|+++|+||+|+.
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (165)
T cd04140          42 ISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES  121 (165)
T ss_pred             EEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence            34577888999999999999999999999999999999999999999999999887765432   468999999999997


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ....+...+...++..++++++++||++|+|++++|++|+.
T Consensus       122 ~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         122 HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence            65667777777788888889999999999999999999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01864 Rab19 Rab19 subfamily

Probab=99.90  E-value=1.7e-22  Score=142.58  Aligned_cols=119  Identities=50%  Similarity=0.884  Sum_probs=105.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|++.+..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+....
T Consensus        45 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  124 (165)
T cd01864          45 LEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR  124 (165)
T ss_pred             EEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence            45678888999999999999999999999999999999999999999999999999876544678999999999997666


Q ss_pred             CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .+...+...++...+. .++++||++|.|++++|+++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         125 EVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             ccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            6777788888888775 58999999999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.90  E-value=1.8e-22  Score=141.67  Aligned_cols=114  Identities=37%  Similarity=0.661  Sum_probs=103.3

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      +..+.+++|||+|++++..++..+++++|++++|||++++.++..+..|+..+.... .++|+++++||.|+.....+..
T Consensus        48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~  126 (162)
T cd04106          48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITN  126 (162)
T ss_pred             CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCH
Confidence            667889999999999999999999999999999999999999999999999887655 5799999999999976666777


Q ss_pred             HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ++...++...+++++++||++|.|++++|++|...
T Consensus       127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         127 EEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            88888888899999999999999999999998653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04148 RGK RGK subfamily

Probab=99.90  E-value=1.7e-22  Score=149.48  Aligned_cols=126  Identities=27%  Similarity=0.358  Sum_probs=107.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhc-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYR-GAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+|||+|++  ......++. ++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+..
T Consensus        43 i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~  120 (221)
T cd04148          43 VSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR  120 (221)
T ss_pred             EEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence            5678889999999999998  334455667 99999999999999999999999998876543 5789999999999976


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      ...+..++...++...+++++++||+++.|++++|+++..++..+....+
T Consensus       121 ~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~  170 (221)
T cd04148         121 SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE  170 (221)
T ss_pred             cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence            66677777788888889999999999999999999999999876555543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.90  E-value=1.9e-22  Score=142.82  Aligned_cols=118  Identities=32%  Similarity=0.617  Sum_probs=102.3

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ..+++.+.+.+|||+|++.+..++..++..+|++|+|||+++..++..+..|+..+..... +.|+++|+||+|+.. ..
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~  120 (166)
T cd00877          43 HTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RK  120 (166)
T ss_pred             EECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-cc
Confidence            4567889999999999999999999999999999999999999999999999999987763 799999999999963 23


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .. .+...++...+++++++||++|+|++++|++|.+.+.+
T Consensus       121 ~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         121 VK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             CC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            33 33445666677889999999999999999999998875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.90  E-value=2.3e-22  Score=142.78  Aligned_cols=120  Identities=41%  Similarity=0.770  Sum_probs=107.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+++|||+|+++++ .+++.+++++|++++|||++++.++..+..|+..+..... .++|+++|+||+|+..
T Consensus        44 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  123 (170)
T cd04115          44 VEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE  123 (170)
T ss_pred             EEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence            4578888999999999999987 5889999999999999999999999999999998887653 5799999999999977


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCC---CCCHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKT---AQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~~i~~l~~~l~~~i  121 (165)
                      ...+...+...++...+++++++||++   +.|++++|..+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            777778888888888889999999999   999999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04116 Rab9 Rab9 subfamily

Probab=99.90  E-value=2.4e-22  Score=142.36  Aligned_cols=118  Identities=37%  Similarity=0.687  Sum_probs=104.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL   77 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl   77 (165)
                      +.++++.+.+++||++|++++..++..+++.+|++++|||+++..+++.+..|+..+.....    .+.|+++++||+|+
T Consensus        47 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  126 (170)
T cd04116          47 LEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDI  126 (170)
T ss_pred             EEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccc
Confidence            45789999999999999999999999999999999999999999999999999988766542    46899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      . ...+...+++.++..++. +++++||++|.|+.++|+.+++.
T Consensus       127 ~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         127 P-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             c-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            5 455677888888888874 79999999999999999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.90  E-value=5.3e-22  Score=139.40  Aligned_cols=120  Identities=48%  Similarity=0.885  Sum_probs=108.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|++++...+..+++++|++|+|||+++..++..+..|+..+........|+++++||+|+....
T Consensus        43 v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  122 (163)
T cd01860          43 VNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR  122 (163)
T ss_pred             EEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC
Confidence            56788899999999999999999999999999999999999999999999999999877755678999999999987656


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .....+...++...+++++++||++|.|+.++|++|.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         123 QVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            6677788888888889999999999999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=99.90  E-value=5.7e-22  Score=138.96  Aligned_cols=119  Identities=47%  Similarity=0.818  Sum_probs=106.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|+.++..++..+++.+|++++|||++++.++..+..|+..+......+.|+++++||+|+....
T Consensus        42 ~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~  121 (161)
T cd01861          42 MYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR  121 (161)
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC
Confidence            45677888999999999999999999999999999999999999999999999998876654469999999999996656


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ....++...++...+++++++||++++|++++|+++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         122 QVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            677778888888888999999999999999999999764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04177 RSR1 RSR1 subgroup

Probab=99.90  E-value=5.3e-22  Score=140.52  Aligned_cols=121  Identities=36%  Similarity=0.609  Sum_probs=107.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|+++|..+++.++++++++++|||.+++.+++.+..|...+..... .+.|+++++||.|+...
T Consensus        42 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~  121 (168)
T cd04177          42 VEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD  121 (168)
T ss_pred             EEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence            45788889999999999999999999999999999999999999999999999888876543 57999999999999766


Q ss_pred             CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..+..++...++..++ ++++++||+++.|++++|.++..+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            6677777777777777 78999999999999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.89  E-value=2.8e-22  Score=141.05  Aligned_cols=114  Identities=17%  Similarity=0.343  Sum_probs=98.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC--
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA--   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--   78 (165)
                      +.+++..+.+.+|||+|++.     ..+++++|++++|||.+++.||+.+..|+..+..... .+.|+++|+||.|+.  
T Consensus        40 i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~  114 (158)
T cd04103          40 VLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES  114 (158)
T ss_pred             EEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence            57889999999999999975     3567899999999999999999999999999987754 568999999999984  


Q ss_pred             CCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ..+.+..+++..++.+. ++.+++|||++|.||+++|..+.+.
T Consensus       115 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            34567777888888776 4899999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04123 Rab21 Rab21 subfamily

Probab=99.89  E-value=8.7e-22  Score=137.75  Aligned_cols=120  Identities=42%  Similarity=0.767  Sum_probs=107.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|++.+..+++.+++++|++++|||+++..++..+..|+..+......++|+++++||+|+....
T Consensus        42 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~  121 (162)
T cd04123          42 VNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR  121 (162)
T ss_pred             EEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            34567788999999999999999999999999999999999999999999999998877764578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+...+...++...+.+++++||++++|++++++++.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         122 VVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            6777777778888899999999999999999999998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.89  E-value=7.3e-22  Score=139.29  Aligned_cols=121  Identities=37%  Similarity=0.561  Sum_probs=104.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhh-hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLA   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~   78 (165)
                      +.++++.+.+++|||+|++++ ...+..+++++|++|+|||+++..+++.+..|+..+....  ..+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  119 (165)
T cd04146          40 VTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL  119 (165)
T ss_pred             EEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence            468889999999999999863 4567788999999999999999999999999998887654  2479999999999996


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIY  122 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~l~~~l~~~i~  122 (165)
                      ....+..++...++...+.+++++||+++. |++++|..+.+.+.
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         120 HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            666677788888888889999999999994 99999999988664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.89  E-value=6.8e-22  Score=139.08  Aligned_cols=115  Identities=30%  Similarity=0.574  Sum_probs=102.6

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      +..+.+.+|||+|++.+..+++.+++++|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+...+..
T Consensus        49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~  127 (164)
T cd04101          49 DNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTD  127 (164)
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCH
Confidence            677899999999999999999999999999999999999999999999998887664 5689999999999976666676


Q ss_pred             HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...+.+....+++++++||+++.|++++|+.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         128 AQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            666677777788999999999999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.89  E-value=7e-22  Score=140.61  Aligned_cols=117  Identities=29%  Similarity=0.585  Sum_probs=101.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-   79 (165)
                      +.+++..+.+++|||+|++++..+++.+++++|++|+|||++++.+|+.+. .|+..+.... .+.|+++++||+|+.. 
T Consensus        41 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  119 (173)
T cd04130          41 VLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTD  119 (173)
T ss_pred             EEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccC
Confidence            467888899999999999999999999999999999999999999999885 5887776543 4689999999999853 


Q ss_pred             -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHH
Q 031132           80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                                 .+.+..+++..++...+. +++++||++|.|++++|+.++.
T Consensus       120 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             hhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence                       345677788888888887 7999999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.89  E-value=1.4e-21  Score=146.62  Aligned_cols=121  Identities=26%  Similarity=0.390  Sum_probs=104.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---------cCCCCeEEEEe
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH---------ANANMTIMLIG   72 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~   72 (165)
                      +.++++.+.++||||+|++.|..++..++.++|++|+|||+++..+|+.+..|+..+...         ...+.|+++++
T Consensus        41 ~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivg  120 (247)
T cd04143          41 YSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG  120 (247)
T ss_pred             EEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEE
Confidence            567889999999999999999999999999999999999999999999999998888654         11468999999


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           73 NKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        73 nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ||+|+.....+..+++..++.. .++.++++||++|.|++++|++|.....
T Consensus       121 NK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~  171 (247)
T cd04143         121 NKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK  171 (247)
T ss_pred             ECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence            9999976556777777766553 3678999999999999999999998654

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.89  E-value=2.7e-21  Score=140.28  Aligned_cols=125  Identities=39%  Similarity=0.608  Sum_probs=115.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.++++.+.+.++||+|++.+..+...++.++|++++||+.++..||+.+..++..+.+... ..+|+++|+||+|+...
T Consensus        44 ~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~  123 (196)
T KOG0395|consen   44 LTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE  123 (196)
T ss_pred             EEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence            67899999999999999999999999999999999999999999999999999999955544 56899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      +.++.++++.++..++++++|+||+.+.|++++|..|+..+-....
T Consensus       124 R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~  169 (196)
T KOG0395|consen  124 RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE  169 (196)
T ss_pred             cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence            8999999999999999999999999999999999999998887443

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.88  E-value=7e-22  Score=141.95  Aligned_cols=119  Identities=20%  Similarity=0.349  Sum_probs=93.5

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +++..+.+++||++|+++++.+|..+++++|++|||||+++..++.++..++..+..... .+.|++|++||+|+...  
T Consensus        56 ~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--  133 (181)
T PLN00223         56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--  133 (181)
T ss_pred             EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--
Confidence            455567899999999999999999999999999999999999999988887777654322 47899999999998643  


Q ss_pred             CCHHHHHHHHHHc-----CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKEH-----GLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        83 ~~~~~~~~~~~~~-----~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ...++......-.     .+.++++||++|+|+.++|++|.+++..+
T Consensus       134 ~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence            3333333222111     12356899999999999999999887654

>cd04142 RRP22 RRP22 subfamily

Probab=99.88  E-value=1.7e-21  Score=141.84  Aligned_cols=124  Identities=18%  Similarity=0.231  Sum_probs=100.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhh--------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCeEEE
Q 031132            2 ITIDNKPIKLQIWDTAGQESFR--------SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA---NANMTIML   70 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~---~~~~p~iv   70 (165)
                      +.++++.+.+++|||+|.+.+.        ......++++|++|+|||++++.+++.+..|+..+....   ..++|+++
T Consensus        42 i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piii  121 (198)
T cd04142          42 VVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVV  121 (198)
T ss_pred             EEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence            4678888999999999975432        123345789999999999999999999999998887664   25789999


Q ss_pred             EeeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           71 IGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        71 v~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      |+||+|+...+....+....++. .++++++++||++|.|++++|+.+...+..+-
T Consensus       122 vgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         122 VGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG  177 (198)
T ss_pred             EEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence            99999996655556666665544 56889999999999999999999998887543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01862 Rab7 Rab7 subfamily

Probab=99.88  E-value=6.4e-21  Score=134.89  Aligned_cols=124  Identities=42%  Similarity=0.729  Sum_probs=107.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL   77 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl   77 (165)
                      +.+++..+.+++||++|++.+..++..+++++|++|+|||++++.++..+..|...+.....    .++|+++++||+|+
T Consensus        42 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  121 (172)
T cd01862          42 VTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL  121 (172)
T ss_pred             EEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence            45778889999999999999999999999999999999999999999988888887765543    26899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ..+.....++...+....+ .+++++||++|.|++++|+++.+.+++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         122 EEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             ccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            7555566777777777777 78999999999999999999999888763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.88  E-value=5.2e-21  Score=134.17  Aligned_cols=121  Identities=40%  Similarity=0.675  Sum_probs=107.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.++++.+.+.+|||+|+..+..++..+++.+|++++|||.+++.++..+..|+..+..... .++|+++++||+|+.+.
T Consensus        41 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~  120 (164)
T cd04139          41 VVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK  120 (164)
T ss_pred             EEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence            46788899999999999999999999999999999999999999999999999998887643 57999999999999654


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..........++..++++++++||++++|++++|+++.+++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         121 RQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             cccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            445666677777788899999999999999999999988765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04114 Rab30 Rab30 subfamily

Probab=99.88  E-value=5.1e-21  Score=135.20  Aligned_cols=120  Identities=48%  Similarity=0.813  Sum_probs=105.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|++.+...+..+++.+|++++|||+++..++..+..|+..+......+.|+++++||+|+....
T Consensus        49 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~  128 (169)
T cd04114          49 VEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR  128 (169)
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            45788889999999999999999999999999999999999999999999999988876654578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+.......+......+++++||++|.|++++|++|.+.+
T Consensus       129 ~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         129 EVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             ccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            6666666777776778899999999999999999998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=99.88  E-value=4.5e-21  Score=134.47  Aligned_cols=118  Identities=49%  Similarity=0.892  Sum_probs=104.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++.+..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+.. 
T Consensus        42 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-  120 (161)
T cd01863          42 LTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-  120 (161)
T ss_pred             EEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-
Confidence            34677889999999999999999999999999999999999999999999999998877754 6789999999999963 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .....++...++...+++++++||++|+|++++++.+++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         121 REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            3456677788888889999999999999999999998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.88  E-value=5.7e-22  Score=141.95  Aligned_cols=124  Identities=34%  Similarity=0.640  Sum_probs=111.1

Q ss_pred             eeeC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            2 ITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ++++ |+.+.+.+|||+||++|..+++..|..+|+++++|++.++.|++.+.. |+.++..++ ++.|+|+||+|.||+.
T Consensus        45 v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~  123 (198)
T KOG0393|consen   45 VTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRD  123 (198)
T ss_pred             EEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhh
Confidence            5784 999999999999999999999999999999999999999999998655 999999998 7899999999999973


Q ss_pred             C------------CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           80 R------------RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        80 ~------------~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      .            ..++.+++..++.+.| ..|+||||+++.|++++|+..+...+....
T Consensus       124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             CHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            2            3577888999999999 559999999999999999999998887543

>cd04149 Arf6 Arf6 subfamily

Probab=99.88  E-value=1.3e-21  Score=138.96  Aligned_cols=114  Identities=21%  Similarity=0.385  Sum_probs=92.7

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +++..+.+++|||+|+++++.+|+.+++++|++|||||+++..++.++..|+..+..... .+.|++||+||+|+..  .
T Consensus        48 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~  125 (168)
T cd04149          48 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--A  125 (168)
T ss_pred             EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--C
Confidence            344567899999999999999999999999999999999999999999888877764322 5689999999999854  2


Q ss_pred             CCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKE-----HGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        83 ~~~~~~~~~~~~-----~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      +..+++..+...     ..++++++||++|+|++++|++|.+
T Consensus       126 ~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         126 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            455555554321     2346899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04135 Tc10 TC10 subfamily

Probab=99.87  E-value=3.4e-21  Score=136.83  Aligned_cols=119  Identities=26%  Similarity=0.515  Sum_probs=102.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++++|||.+++.+|+.+. .|+..+... ..+.|+++++||+|+.+.
T Consensus        41 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~  119 (174)
T cd04135          41 VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDD  119 (174)
T ss_pred             EEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcC
Confidence            467888899999999999999999999999999999999999999999886 477766655 367999999999998532


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                                  ..++.+++..++...+. +++++||++|.|++++|+.++..+
T Consensus       120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         120 PKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence                        24666778888888886 699999999999999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.87  E-value=7.3e-22  Score=139.63  Aligned_cols=117  Identities=21%  Similarity=0.344  Sum_probs=95.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.++++.+.+.+||++|+++++.+|..+++++|++++|||+++..++..+..|+..+.... .++|+++|+||+|+....
T Consensus        37 ~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~  115 (164)
T cd04162          37 VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAAR  115 (164)
T ss_pred             EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCC
Confidence            3466778899999999999999999999999999999999999999999999988876543 579999999999986544


Q ss_pred             CCCH----HHHHHHHHHcCCeEEEecCCC------CCCHHHHHHHHHH
Q 031132           82 AVST----EEGEQFAKEHGLIFMEASAKT------AQNVEEAFIKTAA  119 (165)
Q Consensus        82 ~~~~----~~~~~~~~~~~~~~~~vSa~~------~~~i~~l~~~l~~  119 (165)
                      .+..    .....++.+.+++++++||++      ++|++++|+.++.
T Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         116 SVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             CHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            3221    122344455678889998888      9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04158 ARD1 ARD1 subfamily

Probab=99.87  E-value=4.4e-21  Score=136.13  Aligned_cols=118  Identities=21%  Similarity=0.363  Sum_probs=96.7

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +++..+.+++|||+|++++..+|..+++++|+++||||++++.++.++..|+..+..... .+.|++|++||+|+..  .
T Consensus        38 ~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~  115 (169)
T cd04158          38 VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--A  115 (169)
T ss_pred             EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--C
Confidence            445567899999999999999999999999999999999999999999999888865432 4589999999999853  3


Q ss_pred             CCHHHHHHHHHHcC------CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        83 ~~~~~~~~~~~~~~------~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ++.++...++...+      +.++++||++|.|+.++|++|.+.+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         116 LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence            55666665543222      257899999999999999999877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.87  E-value=1.1e-21  Score=140.02  Aligned_cols=115  Identities=20%  Similarity=0.364  Sum_probs=91.5

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      ....+.+++|||+|++++..+|..+++++|++|||||++++.+++++..|+..+..... .+.|++||+||+|+.+.  .
T Consensus        53 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~  130 (175)
T smart00177       53 TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--M  130 (175)
T ss_pred             EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--C
Confidence            34567899999999999999999999999999999999999999999998888765432 56899999999998542  2


Q ss_pred             CHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           84 STEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        84 ~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...+......     ...+.++++||++|+|+.++|++|...+
T Consensus       131 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      131 KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            3333332221     1123477899999999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.86  E-value=5.7e-21  Score=134.37  Aligned_cols=114  Identities=20%  Similarity=0.366  Sum_probs=89.2

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ++...+.+.+|||+|++++..+|..+++++|++|||||+++..+++.+..|+..+..... ...|++|++||+|+.+.  
T Consensus        39 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--  116 (159)
T cd04150          39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--  116 (159)
T ss_pred             EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--
Confidence            344567899999999999999999999999999999999999999999888877754322 46899999999998542  


Q ss_pred             CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ....+......     ...+.++++||++|+|++++|++|.+
T Consensus       117 ~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         117 MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            23333222111     12345789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.86  E-value=4.7e-20  Score=131.79  Aligned_cols=125  Identities=36%  Similarity=0.552  Sum_probs=108.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..++..++..++++++|||.++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus        42 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~  121 (180)
T cd04137          42 IRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ  121 (180)
T ss_pred             EEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence            45677788899999999999999999999999999999999999999999999888876543 57899999999999765


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ..+...+...++..++.+++++||+++.|+.++|.++.+.+.+...
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  167 (180)
T cd04137         122 RQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVEN  167 (180)
T ss_pred             CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            5666666777777788899999999999999999999998876543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.86  E-value=2.4e-20  Score=135.69  Aligned_cols=121  Identities=24%  Similarity=0.356  Sum_probs=101.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~-   79 (165)
                      +.+++..+.+++||++|+..+..++..++.++|++|||||+++..+++.+..|+..+..... .++|+++++||+|+.. 
T Consensus        40 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~  119 (198)
T cd04147          40 YEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE  119 (198)
T ss_pred             EEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence            45677788999999999999999999999999999999999999999999999988877654 5799999999999854 


Q ss_pred             CCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ...+.......... ..+.+++++||++|.|++++|+++.+.+.
T Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         120 ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            34444444443333 44678999999999999999999998775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01892 Miro2 Miro2 subfamily

Probab=99.86  E-value=5.5e-21  Score=135.75  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=99.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|++.+..++..+++++|++++|||++++.+++.+..|+..+...  .++|+++|+||+|+.+..
T Consensus        47 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~  124 (169)
T cd01892          47 VEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQ  124 (169)
T ss_pred             EEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccc
Confidence            467888889999999999999999999999999999999999999999988888765332  468999999999996544


Q ss_pred             CCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .....+...++..+++. ++++||+++.|++++|+.+.+.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         125 QRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             cccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            33334455667777774 799999999999999999998775

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00876 Ras Ras family

Probab=99.86  E-value=3.5e-20  Score=129.34  Aligned_cols=120  Identities=42%  Similarity=0.682  Sum_probs=107.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++||++|+..+..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+...
T Consensus        40 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  119 (160)
T cd00876          40 IVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE  119 (160)
T ss_pred             EEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence            45677788999999999999999999999999999999999999999999999988887764 57999999999999765


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..+..+.+..++...+.+++++||+++.|++++|++|.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         120 RQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             ceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence            66777888888888889999999999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.86  E-value=1.5e-20  Score=135.08  Aligned_cols=119  Identities=27%  Similarity=0.401  Sum_probs=92.8

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +++..+.+++|||+|+++++.+|..+++++|++|||||+++..++..+..++..+.... ...+|++|++||.|+.+.  
T Consensus        56 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--  133 (182)
T PTZ00133         56 VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--  133 (182)
T ss_pred             EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--
Confidence            44556789999999999999999999999999999999999999998888777765432 146899999999998542  


Q ss_pred             CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ....+......     ...+.++++||++|+|+.++|++|.+.+.+.
T Consensus       134 ~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        134 MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence            23333322211     1123567899999999999999999877664

>cd00154 Rab Rab family

Probab=99.86  E-value=3.5e-20  Score=128.60  Aligned_cols=117  Identities=63%  Similarity=0.994  Sum_probs=104.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|+..+...+..+++++|++++|||+++++++..+..|+..+......+.|+++++||+|+....
T Consensus        42 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  121 (159)
T cd00154          42 IEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR  121 (159)
T ss_pred             EEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence            34566788999999999999999999999999999999999999999999999998887754578999999999996455


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      ....++...++...+++++++||+++.|++++|++|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         122 QVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            6677888888888899999999999999999999885

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.86  E-value=2.3e-20  Score=134.15  Aligned_cols=121  Identities=26%  Similarity=0.387  Sum_probs=97.5

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      ++..+.+.+|||+|++++..+|+.+++++|++++|||+++..+++.+..|+..+..... .+.|+++++||+|+..  ..
T Consensus        48 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~  125 (183)
T cd04152          48 NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--AL  125 (183)
T ss_pred             CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cC
Confidence            34678899999999999999999999999999999999999999988888887765433 5789999999999853  23


Q ss_pred             CHHHHHHHHH--Hc----CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           84 STEEGEQFAK--EH----GLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        84 ~~~~~~~~~~--~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ..++...+..  ..    +++++++||++|+|++++|++|.+.+.++..+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~  175 (183)
T cd04152         126 SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKM  175 (183)
T ss_pred             CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Confidence            4444443332  11    24688999999999999999999998765544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.85  E-value=9.7e-20  Score=129.43  Aligned_cols=119  Identities=32%  Similarity=0.602  Sum_probs=99.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|+++|..++..++.++|++++|||+++..+++.+. .|+..+.... .+.|+++++||+|+...
T Consensus        42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  120 (175)
T cd01870          42 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND  120 (175)
T ss_pred             EEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccC
Confidence            467888899999999999999999988999999999999999999998885 4777766543 57899999999998532


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                                  ..+...+.+.++...+. ++++|||++|.|++++|++|.+.+
T Consensus       121 ~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         121 EHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             hhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence                        22345666777777764 699999999999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04129 Rho2 Rho2 subfamily

Probab=99.84  E-value=1.2e-19  Score=130.82  Aligned_cols=121  Identities=31%  Similarity=0.592  Sum_probs=102.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-   79 (165)
                      +.+++..+.+.+|||+|++.+....+.++..+|+++++||+++..+++.+. .|+..+.... .+.|+++|+||+|+.. 
T Consensus        42 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~  120 (187)
T cd04129          42 CRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQD  120 (187)
T ss_pred             EEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhC
Confidence            356778888999999999998888888899999999999999999999987 5888887654 4699999999999843 


Q ss_pred             ---------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           80 ---------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        80 ---------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                               ...+...+...++...+. +++++||++|.|++++|+++.+.++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         121 AVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             cccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence                     233455677778888885 79999999999999999999987754

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04154 Arl2 Arl2 subfamily

Probab=99.84  E-value=4.7e-20  Score=131.17  Aligned_cols=110  Identities=25%  Similarity=0.342  Sum_probs=90.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.+.+|||+|++.++.+|..+++++|++++|||+++..++.....|+..+..... .+.|+++|+||+|+.+..  ..+
T Consensus        57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~  134 (173)
T cd04154          57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEE  134 (173)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHH
Confidence            46789999999999999999999999999999999999999988888877754322 579999999999986432  444


Q ss_pred             HHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           87 EGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        87 ~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      +...+..     ..+++++++||++|.|++++|+++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         135 EIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             HHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            4444432     23567999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.83  E-value=2.7e-19  Score=126.43  Aligned_cols=120  Identities=28%  Similarity=0.359  Sum_probs=95.6

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..
T Consensus        41 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~  119 (166)
T cd01893          41 DVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGS  119 (166)
T ss_pred             eecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccc
Confidence            45677889999999999998888888899999999999999999999875 5777776654 478999999999996544


Q ss_pred             CCC--HHHHHHHHHHc-C-CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVS--TEEGEQFAKEH-G-LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~--~~~~~~~~~~~-~-~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ...  ......++..+ + .+++++||+++.|++++|+.+.+.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         120 SQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             chhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence            321  22333333333 2 369999999999999999999987754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.83  E-value=4.5e-20  Score=130.78  Aligned_cols=113  Identities=21%  Similarity=0.275  Sum_probs=90.2

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      +...+.+++||++|+++++.+|..+++++|++|||||+++..++.++..|+..+..... .++|+++|+||+|+....  
T Consensus        39 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--  116 (167)
T cd04161          39 RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--  116 (167)
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--
Confidence            34467899999999999999999999999999999999999999999999988876533 578999999999996543  


Q ss_pred             CHHHHH------HHHHHcC--CeEEEecCCCC------CCHHHHHHHHHH
Q 031132           84 STEEGE------QFAKEHG--LIFMEASAKTA------QNVEEAFIKTAA  119 (165)
Q Consensus        84 ~~~~~~------~~~~~~~--~~~~~vSa~~~------~~i~~l~~~l~~  119 (165)
                      +..+..      .++...+  ++++++||++|      .|+.+.|+||..
T Consensus       117 ~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         117 LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            222211      1222223  45778999998      899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04157 Arl6 Arl6 subfamily

Probab=99.83  E-value=1.2e-19  Score=127.18  Aligned_cols=113  Identities=20%  Similarity=0.326  Sum_probs=88.9

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +...+.+++|||+|++++..+|..+++++|++|||+|+++..++..+..|+..+....   ..++|+++|+||+|+....
T Consensus        41 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~  120 (162)
T cd04157          41 EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL  120 (162)
T ss_pred             EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC
Confidence            3456789999999999999999999999999999999999999988888888775542   1479999999999985432


Q ss_pred             CCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        82 ~~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                        ...+......     ...++++++||++|.|++++|++|.+
T Consensus       121 --~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         121 --TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             --CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence              2232222211     11345899999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.83  E-value=3.9e-20  Score=129.67  Aligned_cols=114  Identities=22%  Similarity=0.319  Sum_probs=87.9

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +++..+.+++|||+|+++++.+|+.+++.+|++++|+|+++..++.....++..+.+.. ..+.|+++++||+|+.+.. 
T Consensus        38 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-  116 (158)
T cd04151          38 VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-  116 (158)
T ss_pred             EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-
Confidence            44556789999999999999999999999999999999999888877777666554322 2468999999999985432 


Q ss_pred             CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                       ...+......     ..+.+++++||++|.|++++|++|.+
T Consensus       117 -~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         117 -SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             -CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence             2223222111     12346999999999999999999865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.83  E-value=1.2e-19  Score=129.71  Aligned_cols=113  Identities=31%  Similarity=0.490  Sum_probs=94.7

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      .++.+.+||.+|+..++..|+.|++++|++|||+|+++...+.+....+..+..... .+.|++|++||+|+.+  ..+.
T Consensus        56 ~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~  133 (175)
T PF00025_consen   56 KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSE  133 (175)
T ss_dssp             TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTH
T ss_pred             CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchh
Confidence            446789999999999999999999999999999999999999999998888876543 6799999999999854  3555


Q ss_pred             HHHHHHHH------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           86 EEGEQFAK------EHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        86 ~~~~~~~~------~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +++.....      ...+.++.+||.+|+|+.+.|+||.++|
T Consensus       134 ~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  134 EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             hHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            55554332      1244589999999999999999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00157 Rho Rho (Ras homology) family

Probab=99.83  E-value=3.5e-19  Score=125.84  Aligned_cols=117  Identities=33%  Similarity=0.635  Sum_probs=97.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++...+..+++.+|++++|||+++..++..... |+..+.... .+.|+++|+||+|+...
T Consensus        41 ~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~  119 (171)
T cd00157          41 VTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDD  119 (171)
T ss_pred             EEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhc
Confidence            3567888999999999999998888899999999999999999998887655 666665544 47999999999998543


Q ss_pred             C-----------CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHH
Q 031132           81 R-----------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        81 ~-----------~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      .           .+...+...+....+. +++++||++|+|+.++|++|++
T Consensus       120 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         120 ENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            3           2346667777777887 8999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.83  E-value=4.1e-19  Score=122.17  Aligned_cols=121  Identities=26%  Similarity=0.411  Sum_probs=101.8

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~   81 (165)
                      ++..+.+++++||++||...++.|+.||..+|++|+|||.+|+..+++-...+..+..-.. .+.|++|++||+|+..  
T Consensus        54 tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--  131 (185)
T KOG0073|consen   54 TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--  131 (185)
T ss_pred             EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--
Confidence            4567788999999999999999999999999999999999999999988888877765333 6789999999999963  


Q ss_pred             CCCHHHHH------HHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGE------QFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        82 ~~~~~~~~------~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .++.+.+.      .+++...++.+.|||.+|+++.+.|+|++..++.+.
T Consensus       132 ~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  132 ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSRL  181 (185)
T ss_pred             ccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHHh
Confidence            34443332      344566788999999999999999999999998854

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=7.7e-20  Score=128.27  Aligned_cols=119  Identities=23%  Similarity=0.354  Sum_probs=99.3

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~   81 (165)
                      ++..+++.+++||.+||++++++|++|+++.+++|||+|.+|+..+.+++..+..+..... ...|+++++||.|+++  
T Consensus        55 ~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--  132 (181)
T KOG0070|consen   55 TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--  132 (181)
T ss_pred             EEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--
Confidence            3556688999999999999999999999999999999999999999999998888877765 6899999999999965  


Q ss_pred             CCCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~-----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .++..++......     ....+..++|.+|+|+.+.++++...+.+
T Consensus       133 als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  133 ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            3454444433222     23457788999999999999999988765

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.82  E-value=3.1e-19  Score=127.24  Aligned_cols=112  Identities=28%  Similarity=0.386  Sum_probs=89.1

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      ...+.+.+|||+|++.+...|..+++++|+++||+|+++..++.....++..+..... .++|+++++||+|+.+  ...
T Consensus        56 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~  133 (174)
T cd04153          56 YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMT  133 (174)
T ss_pred             ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCC
Confidence            3457899999999999999999999999999999999999999888887777754432 4689999999999854  233


Q ss_pred             HHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           85 TEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        85 ~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      .++.....     ...+++++++||++|+|++++|++|..
T Consensus       134 ~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         134 PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            33332221     123457899999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.82  E-value=3.4e-19  Score=125.63  Aligned_cols=111  Identities=28%  Similarity=0.424  Sum_probs=90.5

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      ....+.+|||+|++.+..++..+++++|++++|+|+++..++.....|+..+..... .+.|+++++||+|+...  ...
T Consensus        48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~  125 (167)
T cd04160          48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSV  125 (167)
T ss_pred             CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCH
Confidence            356789999999999999999999999999999999998889888888887765432 57899999999998543  334


Q ss_pred             HHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           86 EEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        86 ~~~~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      .+...+...       .+++++++||++|+|+++++++|.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         126 EEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             HHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            444443322       2457999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.81  E-value=3.3e-19  Score=124.84  Aligned_cols=111  Identities=25%  Similarity=0.412  Sum_probs=88.6

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      ..+.+.+|||+|++.+..+|..+++++|++++|+|+++..++.....|+..+..... .+.|+++++||+|+...  ...
T Consensus        42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~  119 (160)
T cd04156          42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTA  119 (160)
T ss_pred             CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCH
Confidence            356899999999999999999999999999999999999999998888887765432 57999999999998532  223


Q ss_pred             HHHHHHH------HHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           86 EEGEQFA------KEHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        86 ~~~~~~~------~~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      .+.....      ...+++++++||++|+|++++|++|.+
T Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            3332221      112456899999999999999998853

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.80  E-value=3.6e-19  Score=124.49  Aligned_cols=111  Identities=22%  Similarity=0.337  Sum_probs=90.4

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      ..+.+.+||++|++.+...+..+++++|++++|||++++.++.....|+..+..... .+.|+++++||+|+....  ..
T Consensus        41 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~  118 (158)
T cd00878          41 KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SV  118 (158)
T ss_pred             CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CH
Confidence            456899999999999999999999999999999999999999999888887766443 578999999999986433  23


Q ss_pred             HHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           86 EEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        86 ~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ++......     ...++++++||++|.|++++|++|..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            33333222     23457999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.80  E-value=2e-20  Score=130.60  Aligned_cols=126  Identities=28%  Similarity=0.485  Sum_probs=114.9

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .++++.+++.+|||+|+++|..+...||++|.+.++||+-+|..||+.+..|.+.+...+ ..+|.++|-||+||.+..+
T Consensus        63 ~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~  141 (246)
T KOG4252|consen   63 KVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQ  141 (246)
T ss_pred             HhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhh
Confidence            345555667789999999999999999999999999999999999999999999998887 5799999999999999889


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      +...++..+++.++..++.+|++...|+..+|..|.+.+.++..++-
T Consensus       142 ~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~  188 (246)
T KOG4252|consen  142 MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSL  188 (246)
T ss_pred             cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998888766643

>cd00879 Sar1 Sar1 subfamily

Probab=99.79  E-value=1.7e-18  Score=124.76  Aligned_cols=111  Identities=27%  Similarity=0.353  Sum_probs=91.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.+.+||++|+..+...|..+++++|++++|+|+++..++.....++..+..... .+.|+++++||+|+..  .+...
T Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~  139 (190)
T cd00879          62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEE  139 (190)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHH
Confidence            36789999999999999999999999999999999999889888888887765433 5689999999999853  45556


Q ss_pred             HHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           87 EGEQFAKE----------------HGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        87 ~~~~~~~~----------------~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +.+.+...                ..++++++||++|+|++++|++|.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         140 ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             HHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            66555432                22458999999999999999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.79  E-value=2.3e-18  Score=123.88  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=90.3

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      +.+.+.+||++|+..++.+|..+++++|+++||+|++++.++.....++..+..... .+.|+++++||+|+..  .++.
T Consensus        59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~  136 (184)
T smart00178       59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASE  136 (184)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCH
Confidence            356789999999999999999999999999999999999999888888877654322 5789999999999853  3455


Q ss_pred             HHHHHHHHH------------cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           86 EEGEQFAKE------------HGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        86 ~~~~~~~~~------------~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +++.....-            ....++++||++|+|++++++||..+
T Consensus       137 ~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      137 DELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             HHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            554433211            12348999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01890 LepA LepA subfamily

Probab=99.79  E-value=3.5e-18  Score=121.79  Aligned_cols=111  Identities=27%  Similarity=0.296  Sum_probs=86.5

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +++.+.++||||+|++++...+..+++++|++|+|||+++..+......|....  .  .++|+++++||+|+.+..  .
T Consensus        63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~--~--~~~~iiiv~NK~Dl~~~~--~  136 (179)
T cd01890          63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL--E--NNLEIIPVINKIDLPSAD--P  136 (179)
T ss_pred             CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH--H--cCCCEEEEEECCCCCcCC--H
Confidence            667888999999999999999999999999999999999876665555444322  1  468999999999985421  2


Q ss_pred             HHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHH
Q 031132           85 TEEGEQFAKEHGLI---FMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        85 ~~~~~~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ......++..++++   ++++||++|+|++++|++|...+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         137 ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            22234455555653   89999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.78  E-value=1.5e-17  Score=122.39  Aligned_cols=118  Identities=31%  Similarity=0.610  Sum_probs=101.4

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      .+++.+.+.+|||+|++++..++..++..++++++|||+++..++..+..|+..+.... .+.|+++++||+|+.. ...
T Consensus        53 ~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~  130 (215)
T PTZ00132         53 TNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQV  130 (215)
T ss_pred             ECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccC
Confidence            47788999999999999999999999999999999999999999999999999887665 5789999999999853 233


Q ss_pred             CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           84 STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .... ..++...++.++++||++|.|+.++|.+|.+.+...
T Consensus       131 ~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        131 KARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             CHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            3333 345667788999999999999999999999988753

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.78  E-value=5.1e-18  Score=123.79  Aligned_cols=104  Identities=22%  Similarity=0.425  Sum_probs=86.3

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-------------------CCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-------------------NAN   65 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-------------------~~~   65 (165)
                      +++.+.+++|||+|+++|..++..+++++|++|+|||++++.|++.+..|+..+....                   ..+
T Consensus        50 ~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (202)
T cd04102          50 EEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQ  129 (202)
T ss_pred             CCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCC
Confidence            3578899999999999999999999999999999999999999999999999987642                   136


Q ss_pred             CeEEEEeeCCCCCCCCCCCHH----HHHHHHHHcCCeEEEecCCCCC
Q 031132           66 MTIMLIGNKCDLAHRRAVSTE----EGEQFAKEHGLIFMEASAKTAQ  108 (165)
Q Consensus        66 ~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~vSa~~~~  108 (165)
                      +|++||+||.|+.+++.+...    ....++.+.+++.++.++.++.
T Consensus       130 ~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         130 IPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             ceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence            899999999999665444443    2445688899998888766443

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.7e-17  Score=111.63  Aligned_cols=116  Identities=22%  Similarity=0.405  Sum_probs=96.4

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +-++++.|.+||.+|+++.+++|++||.+..++|||+|+.+.+..+++++.+..+..... ...|++|.+||.|+++  .
T Consensus        56 VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A  133 (180)
T KOG0071|consen   56 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--A  133 (180)
T ss_pred             EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--c
Confidence            446778899999999999999999999999999999999999999999998877766554 6789999999999965  3


Q ss_pred             CCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKE-----HGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        83 ~~~~~~~~~~~~-----~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..+.+++.+.+-     ..+.+.+++|.+|+|+.+.|.||...+
T Consensus       134 ~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  134 MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            466666554332     234578899999999999999997654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.75  E-value=6.3e-18  Score=114.51  Aligned_cols=118  Identities=21%  Similarity=0.338  Sum_probs=95.4

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+..+.+++.+||.+||.+++.+|+.|++.++++++|+|+++++.+...++.+..++.... .++|++|++||.|+++  
T Consensus        59 k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--  136 (186)
T KOG0075|consen   59 KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--  136 (186)
T ss_pred             EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--
Confidence            5677888999999999999999999999999999999999999888888888877765554 6899999999999854  


Q ss_pred             CCCHHHHHHH-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQF-----AKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .++......-     .....+.+|-+|++...|++-+.+||+++--
T Consensus       137 AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  137 ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence            3333322211     1112345889999999999999999998753

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.74  E-value=4.2e-17  Score=113.17  Aligned_cols=111  Identities=23%  Similarity=0.370  Sum_probs=87.3

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      ..+.+.+||++|++.+..+|..+++.+|++++|+|+++..++.....|+..+..... .+.|+++++||+|+.+..  ..
T Consensus        42 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~  119 (159)
T cd04159          42 GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SV  119 (159)
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CH
Confidence            347799999999999999999999999999999999999888888887777654332 578999999999986432  22


Q ss_pred             HHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           86 EEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        86 ~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      .+.....     ....++++++||+++.|+++++++|.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         120 DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            2221111     112357899999999999999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.74  E-value=5.4e-17  Score=110.73  Aligned_cols=126  Identities=24%  Similarity=0.380  Sum_probs=112.5

Q ss_pred             EEEEEEEeCCCchhh-hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            8 PIKLQIWDTAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      .=.+.|+||+|...+ ..+-++|+.-+|++++||+..+++||+.+..+...|.+... ..+|+++++||+|+.++.++..
T Consensus        59 rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~  138 (198)
T KOG3883|consen   59 REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM  138 (198)
T ss_pred             hheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence            346899999999887 66889999999999999999999999999888888888765 6899999999999988888899


Q ss_pred             HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCC
Q 031132           86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVS  133 (165)
Q Consensus        86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~  133 (165)
                      +.++.+++.-.+..++++|.+...+-+.|..+...+.....+..++-.
T Consensus       139 d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fpl~  186 (198)
T KOG3883|consen  139 DVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFPLS  186 (198)
T ss_pred             HHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCcch
Confidence            999999999999999999999999999999999988877777666554

>PLN00023 GTP-binding protein; Provisional

Probab=99.72  E-value=2.7e-16  Score=120.95  Aligned_cols=121  Identities=24%  Similarity=0.480  Sum_probs=93.6

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC------------CCCeEEEEee
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN------------ANMTIMLIGN   73 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~n   73 (165)
                      ++.+.++||||+|+++|+.+++.+++++|++|+|||+++..+++.+..|+..+.....            .++|++||+|
T Consensus        80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN  159 (334)
T PLN00023         80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN  159 (334)
T ss_pred             CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence            3578899999999999999999999999999999999999999999999999987631            2489999999


Q ss_pred             CCCCCCCC---C---CCHHHHHHHHHHcCCe-E------E---------EecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           74 KCDLAHRR---A---VSTEEGEQFAKEHGLI-F------M---------EASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        74 K~Dl~~~~---~---~~~~~~~~~~~~~~~~-~------~---------~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      |+||....   .   +..++++.+++..++. .      .         ...|+.+.-=++++....+.+++++.
T Consensus       160 K~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (334)
T PLN00023        160 KADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRY  234 (334)
T ss_pred             CccccccccccccccccHHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHh
Confidence            99996432   2   3567888999887742 1      1         12355544445666666666666544

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.71  E-value=1.5e-16  Score=112.25  Aligned_cols=112  Identities=21%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             EEEEEEEEeCCCchhh----h-----hhhHhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132            7 KPIKLQIWDTAGQESF----R-----SITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~----~-----~~~~~~~~~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      +.+.+++|||+|+...    +     .........+|++++|+|+++..+  ++....|+..+.... .+.|+++++||+
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~  123 (168)
T cd01897          45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKI  123 (168)
T ss_pred             CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEcc
Confidence            4578999999998421    0     111112234689999999998654  355566777765543 478999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           76 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        76 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      |+.....+..  ...+....+.+++++||++|.|++++|+++.+.+
T Consensus       124 Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         124 DLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            9864433222  3444444567899999999999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.71  E-value=3.7e-16  Score=110.76  Aligned_cols=107  Identities=24%  Similarity=0.380  Sum_probs=84.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      ...+.+||++|+..+...|..+++++|++++|+|+++..++.....++..+..... .++|+++++||+|+....  ...
T Consensus        57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~  134 (173)
T cd04155          57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAE  134 (173)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHH
Confidence            45789999999999999999999999999999999998888888877776654432 568999999999985422  222


Q ss_pred             HHHHHHHHcC--------CeEEEecCCCCCCHHHHHHHHHH
Q 031132           87 EGEQFAKEHG--------LIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        87 ~~~~~~~~~~--------~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      +.   ....+        .+++++||++|+|++++|++|.+
T Consensus       135 ~i---~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         135 EI---AEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             HH---HHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            22   22222        24789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=8e-17  Score=111.94  Aligned_cols=115  Identities=29%  Similarity=0.393  Sum_probs=94.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      +..+.|||.+||+..+++|..||..++++|+++|+++++.|++-...+..+..+-. .++|+++.+||.|+.+..  ...
T Consensus        68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~  145 (197)
T KOG0076|consen   68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAA  145 (197)
T ss_pred             cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHH
Confidence            55789999999999999999999999999999999999999888887777765554 789999999999996533  333


Q ss_pred             HHHHH---HHH---cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           87 EGEQF---AKE---HGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        87 ~~~~~---~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ++...   +..   ..+++.++||.+|+||++.+.|++..+.+.
T Consensus       146 El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  146 ELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             HHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            33322   222   246799999999999999999999887665

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.69  E-value=6.6e-16  Score=120.46  Aligned_cols=115  Identities=15%  Similarity=0.065  Sum_probs=88.1

Q ss_pred             EEEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~   79 (165)
                      ..+.+||+||..+       ....+..+++.++++|+|+|+++..+++.+..|...+..+..  .++|+++|+||+|+..
T Consensus       206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~  285 (335)
T PRK12299        206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD  285 (335)
T ss_pred             cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence            3589999999742       223333456789999999999987788888889888876643  4689999999999865


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ...........++...+.+++++||++++|+++++++|.+.+.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            43333333444455566889999999999999999999987754

>cd01898 Obg Obg subfamily

Probab=99.69  E-value=3.5e-16  Score=110.39  Aligned_cols=111  Identities=17%  Similarity=0.161  Sum_probs=82.8

Q ss_pred             EEEEEEeCCCch----hhhhhhHhh---hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC
Q 031132            9 IKLQIWDTAGQE----SFRSITRSY---YRGAAGALLVYDITRR-ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA   78 (165)
Q Consensus         9 ~~~~l~Dt~G~~----~~~~~~~~~---~~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~   78 (165)
                      ..+.+|||||..    .+..++..+   +..+|++++|+|+++. .+++.+..|...+.....  .+.|+++|+||+|+.
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL  127 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence            478999999973    222233333   4469999999999998 788888888888766532  368999999999986


Q ss_pred             CCCCCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ..... ......+... .+.+++++||+++.|++++|+++.+.
T Consensus       128 ~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         128 DEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             Cchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            54332 2333444444 36789999999999999999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.68  E-value=4.4e-15  Score=101.30  Aligned_cols=115  Identities=55%  Similarity=0.874  Sum_probs=90.0

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH-HhcCCCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR-QHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ..+....+.+||++|...+...+..+++.+|++++|+|+++..++.....|+.... .....+.|+++++||+|+.....
T Consensus        40 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~  119 (157)
T cd00882          40 VDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV  119 (157)
T ss_pred             ECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence            34567889999999999998888999999999999999999998888887733222 22226799999999999864433


Q ss_pred             CCHHH-HHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132           83 VSTEE-GEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        83 ~~~~~-~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      ..... ..........+++++|+.++.|+++++++|.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         120 VSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            22222 3344455578899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04171 SelB SelB subfamily

Probab=99.67  E-value=1.6e-15  Score=106.23  Aligned_cols=109  Identities=19%  Similarity=0.092  Sum_probs=74.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC--CCH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VST   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~   85 (165)
                      ...+.+|||+|++++......++.++|++++|+|+++... ......+..+...  ...|+++++||+|+.....  ...
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~  126 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-PQTREHLEILELL--GIKRGLVVLTKADLVDEDWLELVE  126 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-HhHHHHHHHHHHh--CCCcEEEEEECccccCHHHHHHHH
Confidence            4578999999999998777778899999999999987211 1111122222211  2248999999999854321  111


Q ss_pred             HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           86 EEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        86 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      .+...+...   .+.+++++||++++|++++++.+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         127 EEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            223333333   3578999999999999999998753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.66  E-value=2.4e-15  Score=104.79  Aligned_cols=105  Identities=17%  Similarity=0.188  Sum_probs=78.4

Q ss_pred             EEEEEEeCCCchhhhh------hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRS------ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~------~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+|||||+..+..      ++..++.  ++|++++|+|+++.....   .++..+..   .++|+++++||+|+...
T Consensus        43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~  116 (158)
T cd01879          43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEK  116 (158)
T ss_pred             eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhccc
Confidence            4689999999977653      4566665  999999999998854432   23333322   36899999999999654


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ..+.. ....+....+.+++++||.++.|++++++++.+.
T Consensus       117 ~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         117 RGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             ccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            33332 2445666678899999999999999999998775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.9e-16  Score=106.13  Aligned_cols=119  Identities=22%  Similarity=0.316  Sum_probs=90.4

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +-+++..+++||.+|+-..++.|+.||.+.|++|+|+|.+|.....-....+..++.-.. ++.-+++++||.|...  .
T Consensus        57 v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~  134 (182)
T KOG0072|consen   57 VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--A  134 (182)
T ss_pred             cccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--h
Confidence            456788999999999999999999999999999999999998766555554444433322 5677899999999853  2


Q ss_pred             CCHHHHHH-----HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQ-----FAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        83 ~~~~~~~~-----~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      +...++..     ..+..-+.++++||.+|+|++.+++|+.+.+..+
T Consensus       135 ~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  135 LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence            33333222     1222336799999999999999999999887643

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.65  E-value=1.2e-15  Score=110.57  Aligned_cols=107  Identities=21%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .++++.+.+.+|||+|+++|...+..+++++|++++|||+++.. +.....++..+..   .++|+++++||+|+.....
T Consensus        59 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~  134 (194)
T cd01891          59 AVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARP  134 (194)
T ss_pred             EEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCH
Confidence            45666788999999999999999999999999999999998742 2223333333322   3689999999999854321


Q ss_pred             -CCHHHHHHHHH-------HcCCeEEEecCCCCCCHHHH
Q 031132           83 -VSTEEGEQFAK-------EHGLIFMEASAKTAQNVEEA  113 (165)
Q Consensus        83 -~~~~~~~~~~~-------~~~~~~~~vSa~~~~~i~~l  113 (165)
                       ....+...+..       ..+++++++||++|.|+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence             11223333332       23678999999999887443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.64  E-value=1.8e-15  Score=104.11  Aligned_cols=98  Identities=19%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             EEEeCCCch-----hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132           12 QIWDTAGQE-----SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus        12 ~l~Dt~G~~-----~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+|||+|+.     .++.+.+ .++++|++++|||++++.++.. ..|...    .  ..|+++++||+|+.+ .....+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~----~--~~p~ilv~NK~Dl~~-~~~~~~  108 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASI----F--VKPVIGLVTKIDLAE-ADVDIE  108 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHh----c--cCCeEEEEEeeccCC-cccCHH
Confidence            689999982     3444444 5899999999999999887654 233322    1  249999999999854 234455


Q ss_pred             HHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHH
Q 031132           87 EGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        87 ~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      ....++...+. +++++||++|.|++++|+++.
T Consensus       109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            66666777776 799999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.64  E-value=4.6e-15  Score=123.48  Aligned_cols=112  Identities=24%  Similarity=0.260  Sum_probs=87.4

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      ++..+.+.||||||+.+|...+..+++.+|++|+|||+++..+......|...+.    .+.|+++++||+|+....  .
T Consensus        66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~  139 (595)
T TIGR01393        66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--P  139 (595)
T ss_pred             CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--H
Confidence            5677899999999999999999999999999999999998766665555544332    368999999999985321  1


Q ss_pred             HHHHHHHHHHcCC---eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           85 TEEGEQFAKEHGL---IFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        85 ~~~~~~~~~~~~~---~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ......+...+++   .++++||++|.|+.++|++|.+.+.
T Consensus       140 ~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       140 ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            2223344445565   3899999999999999999987663

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01878 HflX HflX subfamily

Probab=99.63  E-value=4e-15  Score=108.47  Aligned_cols=106  Identities=20%  Similarity=0.175  Sum_probs=79.1

Q ss_pred             EEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132           10 KLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus        10 ~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      .+.+|||+|...         +...+ ..+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+...
T Consensus        90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~  168 (204)
T cd01878          90 EVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD  168 (204)
T ss_pred             eEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence            789999999732         22222 23678999999999999888877777776665544356899999999998543


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...     .........+++++||+++.|+++++++|.+.+
T Consensus       169 ~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         169 EEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             HHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence            221     133344566799999999999999999987653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.62  E-value=7.1e-15  Score=103.42  Aligned_cols=111  Identities=18%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC-HH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~   86 (165)
                      ...+.+|||+|+..+..++...+..+|++++|+|+++..... ....+..+..   .++|+++++||+|+....... ..
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~  124 (168)
T cd01887          49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKN  124 (168)
T ss_pred             cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHH
Confidence            567899999999999999999999999999999998743211 1112222222   468999999999985322100 01


Q ss_pred             HHHHHHH----H--cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           87 EGEQFAK----E--HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        87 ~~~~~~~----~--~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ....+..    .  ..++++++||++++|+.+++++|.+...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            1111111    1  1357999999999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.62  E-value=6e-15  Score=101.04  Aligned_cols=122  Identities=25%  Similarity=0.477  Sum_probs=101.9

Q ss_pred             CeeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC--
Q 031132            1 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA--   78 (165)
Q Consensus         1 ~~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~--   78 (165)
                      ++.+.|..+.+.+||.+|++++..+.+...+++-+++|+||.+.+.+++.+..|+...+......+|+ +|+||.|+-  
T Consensus        61 t~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~  139 (205)
T KOG1673|consen   61 TVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFID  139 (205)
T ss_pred             EEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhc
Confidence            46788999999999999999999999999999999999999999999999999999988776445555 579999962  


Q ss_pred             --CCCC-CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           79 --HRRA-VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        79 --~~~~-~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                        .+.+ .-..+.+.+++.++.+.+++|+..+.|+..+|.-++..+..
T Consensus       140 lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  140 LPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFN  187 (205)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhC
Confidence              1111 11234566788889999999999999999999988887764

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.62  E-value=2.1e-14  Score=99.03  Aligned_cols=116  Identities=35%  Similarity=0.524  Sum_probs=88.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR-ETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+||++|+.++..++..+++.++++++++|.... .++.... .|...+......+.|+++++||+|+..
T Consensus        43 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (161)
T TIGR00231        43 IEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD  122 (161)
T ss_pred             EEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence            34566668899999999999999999999999999999999876 5565554 566555555433789999999999854


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      .. ........+......+++++||.++.|+.++|++|.
T Consensus       123 ~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       123 AK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             ch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            33 223333333333456799999999999999999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.61  E-value=1.4e-14  Score=112.97  Aligned_cols=112  Identities=17%  Similarity=0.133  Sum_probs=82.8

Q ss_pred             EEEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCC
Q 031132            9 IKLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCD   76 (165)
Q Consensus         9 ~~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D   76 (165)
                      ..+.+|||||..+       ....+...+++++++++|+|+++.   ..++.+..|...+.....  .+.|++||+||+|
T Consensus       205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D  284 (329)
T TIGR02729       205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID  284 (329)
T ss_pred             eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence            5689999999843       222233345679999999999976   567777777777765532  4689999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +..... .....+.+....+.+++++||++++|+++++++|.+.+
T Consensus       285 L~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       285 LLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             CCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            864322 22334445556678899999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.60  E-value=6.4e-15  Score=104.32  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             EEEEEEEeCCCchh----hhhhh---HhhhcCCcEEEEEEeCCCh------hhHHHHHHHHHHHHHhcC-------CCCe
Q 031132            8 PIKLQIWDTAGQES----FRSIT---RSYYRGAAGALLVYDITRR------ETFNHLASWLEDARQHAN-------ANMT   67 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~----~~~~~---~~~~~~ad~vi~v~D~~~~------~s~~~~~~~~~~i~~~~~-------~~~p   67 (165)
                      ...+.+|||||...    .+.++   ..+++++|++++|+|+++.      .++.++..|...+.....       .+.|
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  122 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP  122 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence            45689999999732    22222   3457789999999999987      567777777777654431       3689


Q ss_pred             EEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        68 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +++++||+|+..................+.+++++||+++.|++++++++...
T Consensus       123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            99999999986443332222223333446679999999999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.60  E-value=8e-15  Score=107.11  Aligned_cols=111  Identities=19%  Similarity=0.172  Sum_probs=75.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STE   86 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~   86 (165)
                      ..+.||||||++++...+...+.++|++++|+|++++.........+..+...  ...|+++++||+|+......  ..+
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~  160 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALENYE  160 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHHHH
Confidence            57899999999998887777788999999999998742111112222222222  22478999999998542211  112


Q ss_pred             HHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           87 EGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        87 ~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..+.+...   .+++++++||++|+|++++|+.|.+.+
T Consensus       161 ~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         161 QIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            22333332   256799999999999999999887643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.60  E-value=4.4e-16  Score=109.49  Aligned_cols=120  Identities=35%  Similarity=0.619  Sum_probs=100.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      .+++++||++||+++..|..-|++.+.+.++|||++...+|+....|.+.+..-..    .++|+++.+||||.......
T Consensus        74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~  153 (229)
T KOG4423|consen   74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN  153 (229)
T ss_pred             HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh
Confidence            34678999999999999999999999999999999999999999999998864432    46889999999998532211


Q ss_pred             -CHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           84 -STEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        84 -~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                       ...+..++..++|+. ++++|++.+.|+.|+-..+++.++-...+
T Consensus       154 ~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  154 EATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             hhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccC
Confidence             235666778888887 99999999999999999999988765543

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.59  E-value=9.7e-14  Score=101.96  Aligned_cols=122  Identities=39%  Similarity=0.592  Sum_probs=93.2

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC---
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR---   81 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~---   81 (165)
                      +..+.+.+|||+|+++++.+++.|+.++++++++||.++ ..+++....|+..+........|+++++||+|+....   
T Consensus        51 ~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~  130 (219)
T COG1100          51 RRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSS  130 (219)
T ss_pred             CCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHH
Confidence            337789999999999999999999999999999999999 4555666678878777653468999999999996543   


Q ss_pred             ---------CCCHHHHHHHHHHc---CCeEEEecCC--CCCCHHHHHHHHHHHHHHHHhc
Q 031132           82 ---------AVSTEEGEQFAKEH---GLIFMEASAK--TAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        82 ---------~~~~~~~~~~~~~~---~~~~~~vSa~--~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                               ..............   ...++++|+.  .+.++.++|..+...+......
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         131 EEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             HHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence                     12222222222211   3338999999  9999999999999998765433

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.59  E-value=3.1e-14  Score=118.68  Aligned_cols=113  Identities=24%  Similarity=0.253  Sum_probs=86.0

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +++.+.++||||||+.+|...+..+++.+|++|+|+|+++.........|....  .  .+.|+++|+||+|+....  .
T Consensus        70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~--~--~~lpiIvViNKiDl~~a~--~  143 (600)
T PRK05433         70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--E--NDLEIIPVLNKIDLPAAD--P  143 (600)
T ss_pred             CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--H--CCCCEEEEEECCCCCccc--H
Confidence            566889999999999999999999999999999999999875554444443322  1  468999999999985422  1


Q ss_pred             HHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           85 TEEGEQFAKEHGLI---FMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        85 ~~~~~~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ......+....++.   ++++||++|.|+.+++++|.+.+..
T Consensus       144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            22223344445554   8999999999999999999887654

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.57  E-value=3e-14  Score=100.22  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=75.6

Q ss_pred             EEeCCCc-----hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132           13 IWDTAGQ-----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus        13 l~Dt~G~-----~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      +|||||+     +.++.+.. .++.+|++++|+|+++..++.  ..|+..+   . .+.|+++++||+|+..   ...+.
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~-~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~-~~~~ii~v~nK~Dl~~---~~~~~  110 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALIT-TLQDVDMLIYVHGANDPESRL--PAGLLDI---G-VSKRQIAVISKTDMPD---ADVAA  110 (158)
T ss_pred             cccCCccccCCHHHHHHHHH-HHhcCCEEEEEEeCCCccccc--CHHHHhc---c-CCCCeEEEEEccccCc---ccHHH
Confidence            6999997     33333333 478999999999999876542  2333332   1 3578999999999853   23455


Q ss_pred             HHHHHHHcCC--eEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           88 GEQFAKEHGL--IFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        88 ~~~~~~~~~~--~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ...++...++  +++++||++|+|++++|+.+.+.+.....
T Consensus       111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  151 (158)
T PRK15467        111 TRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEA  151 (158)
T ss_pred             HHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhhhc
Confidence            6666767775  89999999999999999988776655443

>cd01894 EngA1 EngA1 subfamily

Probab=99.57  E-value=2.9e-14  Score=98.98  Aligned_cols=103  Identities=17%  Similarity=0.069  Sum_probs=73.6

Q ss_pred             EEEEEEeCCCchhhhh--------hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~--------~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+|||||...+..        .+...++.+|++++|+|+++..+.... .+...+. .  .+.|+++++||+|+...
T Consensus        45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~-~--~~~piiiv~nK~D~~~~  120 (157)
T cd01894          45 REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLR-K--SKKPVILVVNKVDNIKE  120 (157)
T ss_pred             eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHH-h--cCCCEEEEEECcccCCh
Confidence            5689999999877443        345668899999999999875443322 1222222 2  35899999999998643


Q ss_pred             CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ...     .......++ +++++|++++.|++++|+++.++
T Consensus       121 ~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         121 EDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             HHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            211     222334566 68999999999999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.56  E-value=7e-14  Score=99.98  Aligned_cols=110  Identities=23%  Similarity=0.201  Sum_probs=80.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--H
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--T   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~   85 (165)
                      ...+.||||+|...+...+..+++.+|++++|+|+++..+.. ...++..+..   .+.|+++++||+|+.......  .
T Consensus        61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~  136 (189)
T cd00881          61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVL  136 (189)
T ss_pred             CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHH
Confidence            467899999999999999999999999999999998765433 2233333332   468999999999986422211  1


Q ss_pred             HHHHHHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           86 EEGEQFAKE--------------HGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        86 ~~~~~~~~~--------------~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .........              ...+++++||++|.|+.+++.++.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            222233322              246799999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.56  E-value=1.2e-13  Score=97.11  Aligned_cols=107  Identities=22%  Similarity=0.305  Sum_probs=89.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      ..+.|++||||+++.-+|+.+++++.++|+++|.+.+..+ .....+..+...  ..+|++|++||.||..  ..+.+++
T Consensus        68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~--~~ip~vVa~NK~DL~~--a~ppe~i  142 (187)
T COG2229          68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR--NPIPVVVAINKQDLFD--ALPPEKI  142 (187)
T ss_pred             ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc--cCCCEEEEeeccccCC--CCCHHHH
Confidence            4688999999999999999999999999999999998888 455555555444  2399999999999965  4577777


Q ss_pred             HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           89 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        89 ~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +.+....  ..++++++|..+++..+.++.+...
T Consensus       143 ~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         143 REALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            7766554  7889999999999999999888766

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.55  E-value=1.1e-14  Score=98.27  Aligned_cols=111  Identities=21%  Similarity=0.352  Sum_probs=86.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      +.+.+||++|+...+..|..||.+.|++|||+|.+|...|+++...+.++..-.. ..+|+++.+||.|+.-...+....
T Consensus        62 f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia  141 (185)
T KOG0074|consen   62 FHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIA  141 (185)
T ss_pred             EEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHH
Confidence            7899999999999999999999999999999999999999999888877754443 679999999999985322111111


Q ss_pred             HH-HH--HHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           88 GE-QF--AKEHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        88 ~~-~~--~~~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      .. .+  .....+++.++||..++|+....+|+..
T Consensus       142 ~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  142 LKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             HhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence            00 01  1122456889999999999998888764

>PRK04213 GTP-binding protein; Provisional

Probab=99.55  E-value=6.8e-14  Score=101.70  Aligned_cols=107  Identities=22%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             EEEEEeCCC-----------chhhhhhhHhhhc----CCcEEEEEEeCCChhhH-H---------HHHHHHHHHHHhcCC
Q 031132           10 KLQIWDTAG-----------QESFRSITRSYYR----GAAGALLVYDITRRETF-N---------HLASWLEDARQHANA   64 (165)
Q Consensus        10 ~~~l~Dt~G-----------~~~~~~~~~~~~~----~ad~vi~v~D~~~~~s~-~---------~~~~~~~~i~~~~~~   64 (165)
                      .+.+|||+|           +++++.++..++.    .++++++|+|+++...+ +         ....++..+. .  .
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~  129 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-E--L  129 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH-H--c
Confidence            478999999           5777777777764    35789999998653221 0         0011122221 1  4


Q ss_pred             CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCC---------eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL---------IFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ++|+++|+||+|+.+..   ......+...+++         +++++||++| |+++++++|.+.+..
T Consensus       130 ~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        130 GIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             CCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            78999999999985432   2344445555554         4799999999 999999999887643

>cd01889 SelB_euk SelB subfamily

Probab=99.55  E-value=6.3e-14  Score=101.35  Aligned_cols=114  Identities=16%  Similarity=0.071  Sum_probs=76.0

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--   83 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--   83 (165)
                      ++.+.+.+|||||+..+..........+|++++|+|+++.........+.  +...  .+.|+++++||+|+......  
T Consensus        65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~  140 (192)
T cd01889          65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERER  140 (192)
T ss_pred             ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHH
Confidence            44678999999999765333334456789999999998754333322221  1222  35799999999998532211  


Q ss_pred             CHHHHHHHHH-------HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           84 STEEGEQFAK-------EHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        84 ~~~~~~~~~~-------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..++......       ..+++++++||++|+|+++++++|..+|..
T Consensus       141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            1122221111       135789999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.54  E-value=1.5e-13  Score=107.94  Aligned_cols=105  Identities=21%  Similarity=0.163  Sum_probs=76.0

Q ss_pred             EEEEEEeCCCc---------hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~---------~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ..+.+|||+|.         +.|...+. .+.+||++++|+|++++.+.+.+..|...+......+.|+++|+||+|+..
T Consensus       237 ~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~  315 (351)
T TIGR03156       237 GEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD  315 (351)
T ss_pred             ceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence            46899999998         22333333 478999999999999988777776666555544334789999999999853


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ..     ..... .....+++++||++|.|+++++++|.+.
T Consensus       316 ~~-----~v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       316 EP-----RIERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             hH-----hHHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            21     11111 1223468999999999999999988754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.52  E-value=7.4e-14  Score=113.84  Aligned_cols=105  Identities=21%  Similarity=0.215  Sum_probs=74.0

Q ss_pred             EEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132           10 KLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus        10 ~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+.+|||+|.+.        +...+..+++.+|++|||||+++..++.. ..+...+. .  .++|+++|+||+|+....
T Consensus        87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~-~--~~~piilV~NK~Dl~~~~  162 (472)
T PRK03003         87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLR-R--SGKPVILAANKVDDERGE  162 (472)
T ss_pred             EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH-H--cCCCEEEEEECccCCccc
Confidence            478999999762        44456678899999999999998755432 22233332 2  478999999999985321


Q ss_pred             CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                         .+....+  ..++ ..+++||++|.|+.++|+++...+.+
T Consensus       163 ---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        163 ---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             ---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence               1111112  2344 35799999999999999999988754

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.51  E-value=1e-13  Score=104.06  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=77.2

Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 031132           20 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI   98 (165)
Q Consensus        20 ~~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~   98 (165)
                      +++..+.+.+++++|++++|||++++. +++.+..|+..+..   .++|+++|+||+||.....+..+....+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            678888999999999999999999877 89999999876643   4689999999999964443333333333 457899


Q ss_pred             EEEecCCCCCCHHHHHHHHH
Q 031132           99 FMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        99 ~~~vSa~~~~~i~~l~~~l~  118 (165)
                      ++++||++|+|++++|+.+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             EEEEecCCchhHHHHHhhhc
Confidence            99999999999999998875

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.51  E-value=6.7e-13  Score=106.34  Aligned_cols=112  Identities=16%  Similarity=0.190  Sum_probs=82.9

Q ss_pred             EEEEEEEeCCCchh----hhhhhHhh---hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031132            8 PIKLQIWDTAGQES----FRSITRSY---YRGAAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKC   75 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~----~~~~~~~~---~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~   75 (165)
                      ...+.|||+||...    ...+...+   +++++++|+|+|+++.   ..++....|...+..+..  .++|.+||+||+
T Consensus       205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~  284 (424)
T PRK12297        205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM  284 (424)
T ss_pred             CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence            34689999999743    22233333   5679999999999864   556667777777766532  468999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           76 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        76 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      |+..    .......+...++.+++++||++++|+++++++|.+.+.+
T Consensus       285 DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        285 DLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             CCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9842    2334455566666789999999999999999999887755

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.51  E-value=2.3e-13  Score=110.99  Aligned_cols=114  Identities=21%  Similarity=0.181  Sum_probs=77.1

Q ss_pred             eeCCEEEEEEEEeCCCc----------hhhhhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQ----------ESFRSIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~----------~~~~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv   71 (165)
                      .+++..  +.+|||+|.          +.|..+. ..+++++|++++|+|+++..++.... ++..+..   .+.|+++|
T Consensus       255 ~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV  328 (472)
T PRK03003        255 ELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLA  328 (472)
T ss_pred             EECCEE--EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEE
Confidence            455554  579999995          3333333 34678999999999999987776653 3333322   46899999


Q ss_pred             eeCCCCCCCCCCC--HHHHHH-HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           72 GNKCDLAHRRAVS--TEEGEQ-FAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        72 ~nK~Dl~~~~~~~--~~~~~~-~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +||+|+.......  ..+... +......+++++||++|.|++++|+.+.+.+.
T Consensus       329 ~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        329 FNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             EECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            9999996422110  111111 11112467999999999999999999987664

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.50  E-value=2.1e-13  Score=110.10  Aligned_cols=105  Identities=21%  Similarity=0.179  Sum_probs=79.3

Q ss_pred             EEEEEEeCCCchhhhhh--------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~--------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+|||+|+..+...        ...+++++|++++|||++++.+++..  |+..+..   .+.|+++|+||+|+...
T Consensus       251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN  325 (442)
T ss_pred             EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc
Confidence            45789999998654332        24578899999999999988776654  5554432   36899999999998532


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                            ....+....+.+++++||++ .|++++|+.+.+.+.+..
T Consensus       326 ------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       326 ------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             ------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence                  12334556678899999997 699999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15494 era GTPase Era; Provisional

Probab=99.50  E-value=3.2e-13  Score=105.80  Aligned_cols=105  Identities=20%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             EEEEEEeCCCchh-hhhhh-------HhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQES-FRSIT-------RSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~~~-~~~~~-------~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      .++.||||||... +..+.       ...+.++|+++||+|.++.  +..... |+..+..   .+.|+++|+||+|+..
T Consensus       100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~  174 (339)
T PRK15494        100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIES  174 (339)
T ss_pred             eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCcc
Confidence            4679999999843 22211       2347899999999998763  333333 3444332   2467788999999853


Q ss_pred             CCCCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .   ...+...++...+  ..++++||++|.|++++|++|...+
T Consensus       175 ~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        175 K---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKA  215 (339)
T ss_pred             c---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhC
Confidence            2   2334444444443  5699999999999999999887654

>TIGR00436 era GTP-binding protein Era

Probab=99.50  E-value=2.9e-13  Score=102.94  Aligned_cols=107  Identities=18%  Similarity=0.084  Sum_probs=73.8

Q ss_pred             EEEEEEeCCCchhh--------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESF--------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~--------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      .++.||||||....        .......++++|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+...
T Consensus        48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK  122 (270)
T ss_pred             cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence            46899999997532        112345678999999999999876554  223333322   46899999999998532


Q ss_pred             CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .. .......+....++ +++++||++|.|+++++++|.+.+
T Consensus       123 ~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436       123 DK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             HH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            21 12223333333444 699999999999999999887764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.49  E-value=4.1e-13  Score=111.57  Aligned_cols=103  Identities=23%  Similarity=0.235  Sum_probs=74.8

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE   89 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~   89 (165)
                      .+.||||||++.|..++...+..+|++++|||+++...... ...+..+.   ..++|+++++||+|+.+.   ..+...
T Consensus       136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT-~e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~  208 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQT-IEAISHAK---AANVPIIVAINKIDKPEA---NPDRVK  208 (587)
T ss_pred             EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhH-HHHHHHHH---HcCCCEEEEEECcccccC---CHHHHH
Confidence            68899999999999999999999999999999987422111 11122211   147899999999998532   233333


Q ss_pred             HHHHHc-------C--CeEEEecCCCCCCHHHHHHHHHH
Q 031132           90 QFAKEH-------G--LIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        90 ~~~~~~-------~--~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ..+...       +  .+++++||++|+|+.++|+++..
T Consensus       209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            332222       2  46999999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.49  E-value=5.5e-13  Score=112.73  Aligned_cols=109  Identities=21%  Similarity=0.216  Sum_probs=79.1

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      +....+.||||||++.|..++...+..+|++|+|+|+++....... ..+..+.   ..++|+++++||+|+....   .
T Consensus       292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~-E~I~~~k---~~~iPiIVViNKiDl~~~~---~  364 (742)
T CHL00189        292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTI-EAINYIQ---AANVPIIVAINKIDKANAN---T  364 (742)
T ss_pred             CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhH-HHHHHHH---hcCceEEEEEECCCccccC---H
Confidence            3457899999999999999999999999999999999874322211 1122221   1478999999999986421   2


Q ss_pred             HHHHHH-------HHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           86 EEGEQF-------AKEHG--LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        86 ~~~~~~-------~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ......       ...++  ++++++||++|.|+.+++++|....
T Consensus       365 e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        365 ERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            222221       22233  6799999999999999999987753

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.49  E-value=1.5e-13  Score=111.30  Aligned_cols=101  Identities=25%  Similarity=0.243  Sum_probs=76.0

Q ss_pred             EEEEEEeCCCchhhhhh--------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~--------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+|||+|.+.+...        ...+++++|++++|||++++.+++....|..      ..+.|+++|+||+|+...
T Consensus       263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~  336 (449)
T PRK05291        263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGE  336 (449)
T ss_pred             eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcccc
Confidence            46899999998754332        2346889999999999998877765433332      246899999999999543


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ....        ...+.+++++||++|.|+++++++|.+.+..
T Consensus       337 ~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        337 IDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             chhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            2211        2345679999999999999999999987754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.48  E-value=4.4e-13  Score=92.88  Aligned_cols=101  Identities=24%  Similarity=0.202  Sum_probs=74.5

Q ss_pred             EEEEEEEeCCCchhhhh--------hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~--------~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ...+.+|||+|...+..        .....+.++|++++|+|++++.+......+..      ....|+++++||+|+..
T Consensus        48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~  121 (157)
T cd04164          48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLP  121 (157)
T ss_pred             CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCC
Confidence            45689999999754321        22346779999999999998766655543332      24689999999999864


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ....       .....+.+++++||+++.|+.+++++|.+.+
T Consensus       122 ~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         122 DSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             cccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            3322       2334467899999999999999999987753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.47  E-value=3.2e-13  Score=112.52  Aligned_cols=106  Identities=18%  Similarity=0.199  Sum_probs=77.7

Q ss_pred             EEEEEEeCCCchhhhhh------hHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRSI------TRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~------~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+++|||+|+.++...      ++.++  ..+|++++|+|+++.+.   ...+...+.   ..+.|+++++||+|+.+.
T Consensus        41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~  114 (591)
T TIGR00437        41 EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEK  114 (591)
T ss_pred             eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHh
Confidence            35789999999776442      44444  37899999999987432   222222222   247899999999998544


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..+. .+.+.+.+..+++++++||++|+|++++++++.+..
T Consensus       115 ~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       115 KGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             CCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4443 345667778899999999999999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.47  E-value=7.7e-13  Score=106.60  Aligned_cols=109  Identities=24%  Similarity=0.162  Sum_probs=74.0

Q ss_pred             EEEEEeCCCchhhhhh-----------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132           10 KLQIWDTAGQESFRSI-----------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~-----------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      .+.+|||+|..++...           ...+++.+|++++|+|+++..+..+.. ++..+..   .+.|+++|+||+|+.
T Consensus       221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLV  296 (429)
T ss_pred             EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccC
Confidence            6889999997543221           134688999999999999876655442 2332222   468999999999986


Q ss_pred             CCCCCCHHHHHH-HHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQ-FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        79 ~~~~~~~~~~~~-~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      . .......... +...    .+++++++||++|.|++++|+++......
T Consensus       297 ~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       297 K-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             C-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2 1111122221 1112    24689999999999999999999886543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.46  E-value=7.4e-13  Score=112.76  Aligned_cols=105  Identities=23%  Similarity=0.260  Sum_probs=75.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      ..+.||||||++.|..++...+..+|++|+|||+++...-.. ...+..+.   ..++|++|++||+|+...   .....
T Consensus       337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT-~e~i~~a~---~~~vPiIVviNKiDl~~a---~~e~V  409 (787)
T PRK05306        337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQT-IEAINHAK---AAGVPIIVAINKIDKPGA---NPDRV  409 (787)
T ss_pred             EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhH-HHHHHHHH---hcCCcEEEEEECcccccc---CHHHH
Confidence            468899999999999999999999999999999987421111 11112211   247899999999999542   12222


Q ss_pred             HH-------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHH
Q 031132           89 EQ-------FAKEHG--LIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        89 ~~-------~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ..       ++..++  ++++++||++|.|+.++|++|...
T Consensus       410 ~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        410 KQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             HHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            11       122333  679999999999999999998764

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.45  E-value=1.6e-12  Score=105.73  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=78.7

Q ss_pred             EEEEEEEeCCCchh----hhhh---hHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhc-----------CCC
Q 031132            8 PIKLQIWDTAGQES----FRSI---TRSYYRGAAGALLVYDITRR----ETFNHLASWLEDARQHA-----------NAN   65 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~----~~~~---~~~~~~~ad~vi~v~D~~~~----~s~~~~~~~~~~i~~~~-----------~~~   65 (165)
                      ...|.||||||...    ...+   ...+++++|++|+|+|+++.    ..+..+..+...+..+.           ..+
T Consensus       205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~  284 (500)
T PRK12296        205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE  284 (500)
T ss_pred             CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence            35789999999632    1111   22346789999999999752    23444444444443332           146


Q ss_pred             CeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        66 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .|.+||+||+|+.+.... .+.........+++++++||++++|+++++.+|.+.+....
T Consensus       285 kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        285 RPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            899999999998643222 12222333455789999999999999999999998876643

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.45  E-value=2e-12  Score=107.42  Aligned_cols=106  Identities=20%  Similarity=0.175  Sum_probs=74.7

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC---
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV---   83 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~---   83 (165)
                      .+.||||||++.|..++..+++.+|++++|+|+++   +.+++.+.    .+ ..  .++|+++++||+|+......   
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l-~~--~~vpiIVv~NK~Dl~~~~~~~~~  142 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM--YKTPFVVAANKIDRIPGWRSHEG  142 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HH-HH--cCCCEEEEEECCCccchhhhccC
Confidence            38899999999999999999999999999999987   33443332    12 12  46899999999998532100   


Q ss_pred             ---------CHHHH------------HHHHH------------Hc--CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           84 ---------STEEG------------EQFAK------------EH--GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        84 ---------~~~~~------------~~~~~------------~~--~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                               .....            ..+..            .+  .++++++||++|+|+++++.+|.....
T Consensus       143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                     00000            01111            11  357999999999999999998876443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.45  E-value=1.7e-12  Score=104.88  Aligned_cols=100  Identities=22%  Similarity=0.207  Sum_probs=72.5

Q ss_pred             EEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            9 IKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         9 ~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ..+.+|||+|...        +......++..+|++|||+|+++..+.  ..+..|+..      .+.|+++++||+|+.
T Consensus        49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~  122 (435)
T PRK00093         49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGP  122 (435)
T ss_pred             cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCc
Confidence            6789999999976        333456678899999999999875433  233333332      368999999999974


Q ss_pred             CCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ..    ......+ ..+++. ++++||.+|.|+.++++.+..
T Consensus       123 ~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        123 DE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             cc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            31    1222222 345664 899999999999999999887

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.44  E-value=1.6e-12  Score=108.22  Aligned_cols=108  Identities=22%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCCC-
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV-   83 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~-   83 (165)
                      ..+.|||+||+++|...+...+.++|++++|+|+++.   .+.+.+    ..+ ..  .++| +++++||+|+.+...+ 
T Consensus        50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl----~il-~~--lgi~~iIVVlNK~Dlv~~~~~~  122 (581)
T TIGR00475        50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL----AVL-DL--LGIPHTIVVITKADRVNEEEIK  122 (581)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH----HHH-HH--cCCCeEEEEEECCCCCCHHHHH
Confidence            6789999999999988888889999999999999883   333322    222 22  3577 9999999998643221 


Q ss_pred             -CHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           84 -STEEGEQFAKEH----GLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        84 -~~~~~~~~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                       ...+...+....    +++++++||++|+|+++++..+...+-.
T Consensus       123 ~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       123 RTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence             122344444443    4679999999999999999988765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.44  E-value=1.8e-12  Score=93.46  Aligned_cols=112  Identities=24%  Similarity=0.229  Sum_probs=77.8

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC-CC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VS   84 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~   84 (165)
                      .....+.|+||||+..|.......+..+|++|+|+|+.+..... ....+..+..   .++|+++++||+|+..... ..
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~  142 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEI  142 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHH
T ss_pred             ccccceeecccccccceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHH
Confidence            34557899999999999888888899999999999998764332 2223333322   4688999999999862110 01


Q ss_pred             HHHHH-HHHHHc------CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           85 TEEGE-QFAKEH------GLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        85 ~~~~~-~~~~~~------~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .++.. .+.+..      .++++++||.+|.|+.++++.|.+.+
T Consensus       143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            11122 232332      25799999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.44  E-value=8.1e-13  Score=88.10  Aligned_cols=73  Identities=36%  Similarity=0.661  Sum_probs=60.4

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHH---HHHHHHhcCCCCeEEEEeeCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~---~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+.+....+++||++|++.+...+...+.++|++++|||++++.+++.+..+   +..+.... .++|++||+||.|
T Consensus        44 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   44 VVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            4566676799999999999998888889999999999999999999887554   55555433 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK11058 GTPase HflX; Provisional

Probab=99.44  E-value=2.9e-12  Score=103.05  Aligned_cols=109  Identities=16%  Similarity=0.080  Sum_probs=76.9

Q ss_pred             EEEEEeCCCchhh--hhhhH------hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132           10 KLQIWDTAGQESF--RSITR------SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus        10 ~~~l~Dt~G~~~~--~~~~~------~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+.+|||+|..+.  ..++.      ..++.||++++|+|++++.+++.+..|...+......+.|+++|+||+|+....
T Consensus       246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~  325 (426)
T PRK11058        246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF  325 (426)
T ss_pred             eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence            5789999998432  22333      336899999999999998777776555554444333468999999999985321


Q ss_pred             CCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .   ....  ....+.+ ++++||++|.|+++++++|.+.+..
T Consensus       326 ~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        326 E---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             h---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            1   1111  1123555 5889999999999999999988754

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.3e-13  Score=97.32  Aligned_cols=114  Identities=31%  Similarity=0.556  Sum_probs=96.9

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      +.+.+..|||+|++.+..+...|+-.+.+.|++||++...++..+..|...+.+.+ .++|+++.+||.|..+..  ...
T Consensus        57 g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~  133 (216)
T KOG0096|consen   57 GQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKA  133 (216)
T ss_pred             CcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--ccc
Confidence            36899999999999999999999999999999999999999999999999999888 579999999999985432  122


Q ss_pred             HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           87 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +.-.+....++.++++||+.+.|....|-++...+..
T Consensus       134 k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  134 KPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             ccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence            2233445567899999999999999999999887654

>cd00880 Era_like Era (E

Probab=99.43  E-value=1.4e-12  Score=89.81  Aligned_cols=109  Identities=21%  Similarity=0.132  Sum_probs=76.8

Q ss_pred             EEEEEEEeCCCchhhh-------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ...+.+|||+|.....       ..+..++..+|++++|+|+++........ +......   .+.|+++++||.|+...
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~  119 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPE  119 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCCh
Confidence            3468999999986543       34456789999999999999876665554 2222222   47899999999998643


Q ss_pred             CCCCHHH---HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 RAVSTEE---GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ~~~~~~~---~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .......   ........+.+++++||.++.|+.++++++.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         120 EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            3222111   112222345779999999999999999998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.43  E-value=1e-12  Score=106.00  Aligned_cols=109  Identities=18%  Similarity=0.136  Sum_probs=74.0

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      ++...+.+.||||+|+++|.......+..+|++++|+|+++..++.  ....++. +.... ...|+++++||+|+.+..
T Consensus        80 ~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~  157 (426)
T TIGR00483        80 FETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYD  157 (426)
T ss_pred             EccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCcc
Confidence            4555678999999999988766666678999999999999874321  1111111 22222 235789999999985321


Q ss_pred             C----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHH
Q 031132           82 A----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAF  114 (165)
Q Consensus        82 ~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~  114 (165)
                      .    ....++..++...+     ++++++||++|+|+.+.+
T Consensus       158 ~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       158 EEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            1    11234445555555     569999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.42  E-value=1.4e-12  Score=108.64  Aligned_cols=116  Identities=19%  Similarity=0.193  Sum_probs=84.9

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .++++.+.+.+|||||+.+|...+..+++.+|++++|+|+++.. ......|+..+..   .++|+++++||+|+.....
T Consensus        58 ~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~  133 (594)
T TIGR01394        58 AIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARP  133 (594)
T ss_pred             EEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCH
Confidence            45666788999999999999999999999999999999998743 3444555555543   3689999999999854321


Q ss_pred             C-CHHHHHHHHH-------HcCCeEEEecCCCCC----------CHHHHHHHHHHHHH
Q 031132           83 V-STEEGEQFAK-------EHGLIFMEASAKTAQ----------NVEEAFIKTAATIY  122 (165)
Q Consensus        83 ~-~~~~~~~~~~-------~~~~~~~~vSa~~~~----------~i~~l~~~l~~~i~  122 (165)
                      . ...+...+..       +..++++++||++|.          |+..+|+.+++.+-
T Consensus       134 ~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       134 DEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             HHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            1 1223333332       235789999999996          78888888777654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.41  E-value=1.7e-12  Score=104.02  Aligned_cols=112  Identities=21%  Similarity=0.183  Sum_probs=77.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--ST   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~   85 (165)
                      ...+.+|||||+++|...+...+..+|++++|+|+++..........+..+...  ...|+++++||+|+......  ..
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~  156 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENY  156 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHH
Confidence            457899999999999888888888999999999998643112222333322222  23578999999998642211  11


Q ss_pred             HHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           86 EEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        86 ~~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +++..+....   +++++++||++|+|+++++++|...+
T Consensus       157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            2233333332   56899999999999999999988754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.40  E-value=2.6e-12  Score=103.54  Aligned_cols=103  Identities=20%  Similarity=0.238  Sum_probs=74.6

Q ss_pred             EEEEEEeCCCc--------hhhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            9 IKLQIWDTAGQ--------ESFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         9 ~~~~l~Dt~G~--------~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ..+.+|||+|.        +.+......+++.+|+++||+|+++..+..  ++..|+.   .   .++|+++|+||+|+.
T Consensus        47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~---~---~~~piilVvNK~D~~  120 (429)
T TIGR03594        47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR---K---SGKPVILVANKIDGK  120 (429)
T ss_pred             eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH---H---hCCCEEEEEECccCC
Confidence            35899999996        344556677789999999999998754332  2333332   2   368999999999985


Q ss_pred             CCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .....    ... ...+++ +++++||.+|.|+.++++++...+.
T Consensus       121 ~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       121 KEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLP  160 (429)
T ss_pred             ccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence            43321    111 335566 6999999999999999999887663

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00066 G-alpha G protein alpha subunit

Probab=99.40  E-value=4.1e-12  Score=98.75  Aligned_cols=124  Identities=19%  Similarity=0.233  Sum_probs=91.9

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcC-CCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv   71 (165)
                      .++.+.+.+.+||++|+...+..|..++.++++++||+|+++.          ..+.+....+..+..... .+.|++|+
T Consensus       155 ~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~  234 (317)
T cd00066         155 KFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILF  234 (317)
T ss_pred             EEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEE
Confidence            4555678899999999999999999999999999999999874          345555555555554433 57999999


Q ss_pred             eeCCCCCCC---------------C-CCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           72 GNKCDLAHR---------------R-AVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        72 ~nK~Dl~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      +||.|+..+               . .-+.+.+..+...          ..+.++.++|.+..++..+|+.+.+.|+...
T Consensus       235 ~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         235 LNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             ccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            999996311               1 1223333333221          1344678899999999999999999998865


Q ss_pred             h
Q 031132          126 Q  126 (165)
Q Consensus       126 ~  126 (165)
                      .
T Consensus       315 l  315 (317)
T cd00066         315 L  315 (317)
T ss_pred             h
Confidence            4

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.39  E-value=2.7e-12  Score=102.97  Aligned_cols=111  Identities=19%  Similarity=0.170  Sum_probs=73.1

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TE   86 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~   86 (165)
                      ..+.||||||+++|......-...+|++++|+|++++.........+..+...  .-.|+++++||+|+.+.....  .+
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence            57899999999888665555566789999999999642111111222222221  224689999999986432211  12


Q ss_pred             HHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           87 EGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        87 ~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +...++...   +.+++++||++|+|++++++.|...+
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            233333322   46799999999999999999987765

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.38  E-value=1.1e-11  Score=98.60  Aligned_cols=113  Identities=16%  Similarity=0.081  Sum_probs=80.4

Q ss_pred             EEEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCC
Q 031132           10 KLQIWDTAGQESF-------RSITRSYYRGAAGALLVYDIT---RRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDL   77 (165)
Q Consensus        10 ~~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl   77 (165)
                      .+.|+||||..+-       .......++.+|++++|+|++   +...++....|+..+.....  .+.|+++|+||+|+
T Consensus       208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl  287 (390)
T PRK12298        208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL  287 (390)
T ss_pred             EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence            5899999997531       111223578999999999988   44556667777777765432  36899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .....+ ......+....+  .+++.+||+++.|++++++.|.+.+.+
T Consensus       288 ~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        288 LDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            543222 223333444444  368999999999999999999887754

>cd04163 Era Era subfamily

Probab=99.37  E-value=6.9e-12  Score=87.32  Aligned_cols=110  Identities=18%  Similarity=0.097  Sum_probs=72.7

Q ss_pred             EEEEEEEEeCCCchhh--------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            7 KPIKLQIWDTAGQESF--------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~--------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ....+.+|||+|....        .......+..+|++++|+|+++..+.. ...+...+..   .+.|+++++||+|+.
T Consensus        49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---~~~~~iiv~nK~Dl~  124 (168)
T cd04163          49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKK---SKTPVILVLNKIDLV  124 (168)
T ss_pred             CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHH---hCCCEEEEEEchhcc
Confidence            3467889999997532        223455688999999999999862111 1122222222   358999999999985


Q ss_pred             CCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ............+.... ..+++++|++++.|++++++.|.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            32222222233333333 3579999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.37  E-value=2.5e-12  Score=95.01  Aligned_cols=107  Identities=21%  Similarity=0.191  Sum_probs=69.2

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh------HHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s------~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+......+.+|||+|+..+...+...+..+|++++|+|+++...      .......+.... .. ...|+++++||+|
T Consensus        71 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~iiivvNK~D  148 (219)
T cd01883          71 KFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TL-GVKQLIVAVNKMD  148 (219)
T ss_pred             EEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-Hc-CCCeEEEEEEccc
Confidence            344556789999999998887766677888999999999988421      112222222222 21 2368999999999


Q ss_pred             CCCCC--CCC----HHHHHHHHHHcC-----CeEEEecCCCCCCHH
Q 031132           77 LAHRR--AVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVE  111 (165)
Q Consensus        77 l~~~~--~~~----~~~~~~~~~~~~-----~~~~~vSa~~~~~i~  111 (165)
                      +....  ...    ..++..+....+     ++++++||++|+|++
T Consensus       149 l~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            86311  011    112222333433     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK10218 GTP-binding protein; Provisional

Probab=99.36  E-value=9e-12  Score=103.90  Aligned_cols=116  Identities=16%  Similarity=0.106  Sum_probs=81.9

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .++++.+.+.+|||+|+.+|...+..+++.+|++++|+|+++.... ....++..+..   .++|.++++||+|+.....
T Consensus        62 ~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~  137 (607)
T PRK10218         62 AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARP  137 (607)
T ss_pred             EEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCch
Confidence            4566778899999999999999999999999999999999875432 23333333332   4689999999999864321


Q ss_pred             -CCHHHHHHHHH-------HcCCeEEEecCCCCC----------CHHHHHHHHHHHHH
Q 031132           83 -VSTEEGEQFAK-------EHGLIFMEASAKTAQ----------NVEEAFIKTAATIY  122 (165)
Q Consensus        83 -~~~~~~~~~~~-------~~~~~~~~vSa~~~~----------~i~~l~~~l~~~i~  122 (165)
                       ....+...+..       ...++++.+||.+|.          |+..+++.|++.+-
T Consensus       138 ~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        138 DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence             11223333321       235779999999998          46777776666553

>cd01895 EngA2 EngA2 subfamily

Probab=99.36  E-value=2.2e-11  Score=85.53  Aligned_cols=106  Identities=24%  Similarity=0.165  Sum_probs=70.3

Q ss_pred             EEEEEeCCCchhh----------hh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132           10 KLQIWDTAGQESF----------RS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus        10 ~~~l~Dt~G~~~~----------~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      .+.+|||+|....          .. .....+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.
T Consensus        51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~  126 (174)
T cd01895          51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLV  126 (174)
T ss_pred             eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccC
Confidence            4789999996432          11 112356799999999999987665433 22222222   368999999999986


Q ss_pred             CCCCCCHHHHHH-HHHHc----CCeEEEecCCCCCCHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQ-FAKEH----GLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        79 ~~~~~~~~~~~~-~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ............ +....    ..+++++||++++|+.++++++.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         127 EKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE  172 (174)
T ss_pred             CccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence            542122222222 22222    367999999999999999998875

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.36  E-value=3.6e-12  Score=102.76  Aligned_cols=110  Identities=19%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ++.+.+.+.||||||+++|.......+..+|++++|+|+++..++ .....++..+ ... ...|+++++||+|+.....
T Consensus        79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~-~~~~iivviNK~Dl~~~~~  156 (425)
T PRK12317         79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTL-GINQLIVAINKMDAVNYDE  156 (425)
T ss_pred             EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHc-CCCeEEEEEEccccccccH
Confidence            455667899999999988765444557899999999999873112 1122222222 222 2246899999999864211


Q ss_pred             ----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 031132           83 ----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        83 ----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~~  115 (165)
                          ...+++..++...+     ++++++||++|+|+.+.+.
T Consensus       157 ~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        157 KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence                11233444454454     4699999999999987543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.35  E-value=9.3e-12  Score=91.26  Aligned_cols=105  Identities=21%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--   83 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--   83 (165)
                      .....+.||||||+++|...+...++.+|++++|+|+++...-. ....+. +.... ...++++++||+|+......  
T Consensus        74 ~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~-~~~~~-~~~~iIvviNK~D~~~~~~~~~  150 (208)
T cd04166          74 TPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSY-ILSLL-GIRHVVVAVNKMDLVDYSEEVF  150 (208)
T ss_pred             cCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHH-HHHHc-CCCcEEEEEEchhcccCCHHHH
Confidence            34457889999999988766667789999999999998753211 112222 22221 12457779999998542211  


Q ss_pred             --CHHHHHHHHHHcCC---eEEEecCCCCCCHHHH
Q 031132           84 --STEEGEQFAKEHGL---IFMEASAKTAQNVEEA  113 (165)
Q Consensus        84 --~~~~~~~~~~~~~~---~~~~vSa~~~~~i~~l  113 (165)
                        ...+...+...+++   +++++||++|.|+.+.
T Consensus       151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence              11233444455553   4899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>smart00275 G_alpha G protein alpha subunit

Probab=99.35  E-value=1.5e-11  Score=96.47  Aligned_cols=124  Identities=18%  Similarity=0.221  Sum_probs=90.2

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLIG   72 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv~   72 (165)
                      +....+.+.+||++|+..++..|.+++.+++++|||+|+++.          ..+.+....+..+..... .+.|++|++
T Consensus       179 f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~  258 (342)
T smart00275      179 FIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFL  258 (342)
T ss_pred             EEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence            444556789999999999999999999999999999999973          345555556665554432 678999999


Q ss_pred             eCCCCCCC---------------CCCCHHHHHHHHHH-----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           73 NKCDLAHR---------------RAVSTEEGEQFAKE-----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        73 nK~Dl~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ||.|+..+               ..-+...+..+...           ..+.++.++|.+..++..+|+.+.+.|+.+..
T Consensus       259 NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      259 NKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             ecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            99997321               01122232222211           12446788999999999999999999988765


Q ss_pred             c
Q 031132          127 D  127 (165)
Q Consensus       127 ~  127 (165)
                      .
T Consensus       339 ~  339 (342)
T smart00275      339 K  339 (342)
T ss_pred             H
Confidence            4

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK00089 era GTPase Era; Reviewed

Probab=99.34  E-value=1.1e-11  Score=95.23  Aligned_cols=110  Identities=17%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             EEEEEEEeCCCchhh--------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            8 PIKLQIWDTAGQESF--------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~--------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ...+.||||||....        .......+..+|++++|+|+++..+  ....++......  .+.|+++|+||+|+..
T Consensus        52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~  127 (292)
T PRK00089         52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVK  127 (292)
T ss_pred             CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCC
Confidence            367999999997442        2233446789999999999988321  111222222222  3689999999999853


Q ss_pred             CCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...........+....+ .+++++||+++.|+++++++|.+.+
T Consensus       128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l  170 (292)
T PRK00089        128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL  170 (292)
T ss_pred             CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence            22122223333333334 4699999999999999999988765

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.33  E-value=1.5e-11  Score=97.77  Aligned_cols=112  Identities=25%  Similarity=0.268  Sum_probs=88.4

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +|+.+.++|.||||+-+|...-...+..+.+.++|+|+++.-.-..+.+.+..+..    +..++-|+||+||+...   
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---  144 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---  144 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---
Confidence            67889999999999999888777788899999999999998666667666666653    46788899999997533   


Q ss_pred             HHHHH-HHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           85 TEEGE-QFAKEHGLI---FMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        85 ~~~~~-~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+... +...-.|+.   .+.+||++|.||++++++|++.+-.
T Consensus       145 pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         145 PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence            33333 334445765   7899999999999999988876543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.31  E-value=3e-11  Score=87.20  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             EEEEEEeCCCc----------hhhhhhhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132            9 IKLQIWDTAGQ----------ESFRSITRSYYRGA---AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus         9 ~~~~l~Dt~G~----------~~~~~~~~~~~~~a---d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      ..+.+|||+|.          +.+..+...+++.+   +++++|+|.+++.+.... .+...+ ..  .+.|+++++||+
T Consensus        70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~--~~~~~iiv~nK~  145 (196)
T PRK00454         70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE--YGIPVLIVLTKA  145 (196)
T ss_pred             CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH--cCCcEEEEEECc
Confidence            46889999994          44555666666654   678899998875433221 111222 22  368999999999


Q ss_pred             CCCCCCCCC--HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           76 DLAHRRAVS--TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        76 Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      |+.......  ...+.........+++++||+++.|++++++.|.+.+
T Consensus       146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        146 DKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            985432211  1123233333357899999999999999999887654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.31  E-value=1.9e-11  Score=104.17  Aligned_cols=106  Identities=20%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             EEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+|||+|.+.        +......+++.+|++|||+|+++.....+ ..|...+..   .+.|+++|+||+|+...
T Consensus       323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQAS  398 (712)
T ss_pred             EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccc
Confidence            4688999999763        34455667899999999999987422111 123333332   47899999999998532


Q ss_pred             CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .    .....+ ...++ ..+++||++|.|+.+++++|++.+..
T Consensus       399 ~----~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        399 E----YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             h----hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence            1    111111 12343 36799999999999999999987744

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.31  E-value=1.7e-11  Score=85.68  Aligned_cols=102  Identities=19%  Similarity=0.264  Sum_probs=67.0

Q ss_pred             EEEEEEeCCCch------hhhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQE------SFRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~------~~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.|+|+||.-      .....+..++  ...|++++|+|+++..   .-......+..   .++|+++++||+|....
T Consensus        47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~  120 (156)
T PF02421_consen   47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAER  120 (156)
T ss_dssp             EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHH
T ss_pred             ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHH
Confidence            468999999942      1234445554  5899999999998743   22222222222   47999999999997543


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  117 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l  117 (165)
                      ..+.. ....+.+.+++|++.+||.+++|+++++++|
T Consensus       121 ~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  121 KGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             cCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            33322 3455666789999999999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=3.3e-11  Score=97.22  Aligned_cols=113  Identities=26%  Similarity=0.256  Sum_probs=86.0

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +|+.+.++++||||+-+|+..-...+..+|++|+|+|+++...-....+++..+.    .+.-+|.|+||+|++..+   
T Consensus       121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad---  193 (650)
T KOG0462|consen  121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD---  193 (650)
T ss_pred             cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC---
Confidence            4667999999999999999988888999999999999998765555555554444    457888999999997543   


Q ss_pred             HHHHHHHH-HHc---CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           85 TEEGEQFA-KEH---GLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        85 ~~~~~~~~-~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .+.+.... .-+   .-+++.+||++|.|+.++++++++.+-..
T Consensus       194 pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP  237 (650)
T KOG0462|consen  194 PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP  237 (650)
T ss_pred             HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence            33332222 222   34599999999999999988888776443

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.30  E-value=6.8e-11  Score=98.56  Aligned_cols=104  Identities=21%  Similarity=0.217  Sum_probs=72.9

Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--C-
Q 031132           11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--S-   84 (165)
Q Consensus        11 ~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~-   84 (165)
                      +.||||||++.|..++...+..+|++++|+|+++   +.+++.+.    .+. .  .++|+++++||+|+......  . 
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~-~--~~vpiIvviNK~D~~~~~~~~~~~  145 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK-R--RKTPFVVAANKIDRIPGWKSTEDA  145 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH-H--cCCCEEEEEECcCCchhhhhhcCc
Confidence            6899999999999999988999999999999997   44444332    221 1  46899999999998421110  0 


Q ss_pred             ---------HHH-----------HHHHHHHc---------------CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           85 ---------TEE-----------GEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        85 ---------~~~-----------~~~~~~~~---------------~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                               ...           ........               .++++++||++|+|+.+++..+...+
T Consensus       146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                     000           00111111               25689999999999999998876543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.29  E-value=3.2e-11  Score=88.16  Aligned_cols=73  Identities=21%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCC-cEEEEEEeCCCh-hhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCCC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVYDITRR-ETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAH   79 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~a-d~vi~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~   79 (165)
                      ....+.+||+||+.+++..+..+++.+ +++|||+|+++. .++.++..++..+....   ..++|+++++||+|+..
T Consensus        46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            356789999999999999999999999 999999999997 67777777766554322   14799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04167 Snu114p Snu114p subfamily

Probab=99.28  E-value=3e-11  Score=88.84  Aligned_cols=70  Identities=27%  Similarity=0.313  Sum_probs=55.1

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +++.+.+.+|||+|+.++...+..++..+|++++|+|+++..+.. ...++..+..   .+.|+++++||+|+.
T Consensus        67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECcccC
Confidence            456789999999999999888888999999999999998765543 2333333322   358999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.28  E-value=1.1e-10  Score=87.28  Aligned_cols=72  Identities=21%  Similarity=0.214  Sum_probs=56.9

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      .++.+...+.+|||||+.+|...+..+++.+|++++|+|+++.... ....++..+..   .++|+++++||+|+.
T Consensus        58 ~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          58 SFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             EEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            3455667899999999999988889999999999999999986433 33444444433   368999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.27  E-value=4.5e-11  Score=96.60  Aligned_cols=109  Identities=25%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             EEEEEEeCCCchh----------hhhh-hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            9 IKLQIWDTAGQES----------FRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~----------~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      ..+.+|||+|..+          |... ...+++.+|++++|+|++++.+..... ++..+..   .+.|+++++||+|+
T Consensus       221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl  296 (435)
T PRK00093        221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDL  296 (435)
T ss_pred             eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccC
Confidence            4578999999643          2211 224678999999999999876554432 2222222   36899999999998


Q ss_pred             CCCCCCCHHHHHHHHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKE----HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ...... .+....+...    ...+++++||++|.|+.++++.+.+...
T Consensus       297 ~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        297 VDEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            632111 1111111111    2468999999999999999999877543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.27  E-value=6.4e-11  Score=99.18  Aligned_cols=108  Identities=17%  Similarity=0.120  Sum_probs=73.8

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCCCC--HH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS--TE   86 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~   86 (165)
                      .+.||||||+++|.......+.++|++++|+|+++... ......+..+ ..  .++| ++||+||+|+.++....  .+
T Consensus        52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-~qT~ehl~il-~~--lgi~~iIVVlNKiDlv~~~~~~~v~~  127 (614)
T PRK10512         52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-AQTREHLAIL-QL--TGNPMLTVALTKADRVDEARIAEVRR  127 (614)
T ss_pred             EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-HHHHHHHHHH-HH--cCCCeEEEEEECCccCCHHHHHHHHH
Confidence            47899999999997766667899999999999987321 1122222222 22  2455 57999999985432111  22


Q ss_pred             HHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           87 EGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        87 ~~~~~~~~~~---~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +...+....+   .+++++||++|+|++++++.|....
T Consensus       128 ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        128 QVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             HHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            3334444444   5799999999999999999987654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.4e-10  Score=93.53  Aligned_cols=108  Identities=22%  Similarity=0.234  Sum_probs=80.7

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE   89 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~   89 (165)
                      .+.|.||||++.|..|+..=.+-+|++|+|+|+++.-    ..+.+..+......+.|++|++||+|.++   .++....
T Consensus        56 ~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv----~pQTiEAI~hak~a~vP~iVAiNKiDk~~---~np~~v~  128 (509)
T COG0532          56 GITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV----MPQTIEAINHAKAAGVPIVVAINKIDKPE---ANPDKVK  128 (509)
T ss_pred             eEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc----chhHHHHHHHHHHCCCCEEEEEecccCCC---CCHHHHH
Confidence            5889999999999999988888999999999999842    11122223222235899999999999873   3344444


Q ss_pred             HHHHHcC---------CeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           90 QFAKEHG---------LIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        90 ~~~~~~~---------~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ....++|         ..++++||++|+|+.+++..++-+....
T Consensus       129 ~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         129 QELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             HHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence            4344433         3589999999999999999888766655

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.26  E-value=1.3e-10  Score=99.16  Aligned_cols=113  Identities=21%  Similarity=0.207  Sum_probs=75.4

Q ss_pred             eeCCEEEEEEEEeCCCch----------hhhhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQE----------SFRSIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~----------~~~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv   71 (165)
                      .+++..  +.+|||+|..          .|..+. ...++.+|++++|+|+++..+...... +..+..   .++|+++|
T Consensus       494 ~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV  567 (712)
T PRK09518        494 EIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLV  567 (712)
T ss_pred             EECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEE
Confidence            345544  6699999963          222222 344789999999999998877665542 333322   46899999


Q ss_pred             eeCCCCCCCCCCCHHHHHH-HHHHc----CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           72 GNKCDLAHRRAVSTEEGEQ-FAKEH----GLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        72 ~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +||+|+.+...  ...... +....    ..+++++||++|.|++++|+.+.+....
T Consensus       568 ~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        568 FNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            99999954221  111111 11111    2457999999999999999998886654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.24  E-value=4.3e-11  Score=85.55  Aligned_cols=98  Identities=16%  Similarity=0.238  Sum_probs=63.4

Q ss_pred             EEEEEeCCCc----------hhhhhhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132           10 KLQIWDTAGQ----------ESFRSITRSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus        10 ~~~l~Dt~G~----------~~~~~~~~~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+.+|||+|.          ..+..+...+++.   ++++++|+|++++.+.... .++..+. .  .++|+++++||+|
T Consensus        65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~-~--~~~pviiv~nK~D  140 (179)
T TIGR03598        65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR-E--RGIPVLIVLTKAD  140 (179)
T ss_pred             cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH-H--cCCCEEEEEECcc
Confidence            4789999995          3344455556654   5899999999876444433 2223222 2  3689999999999


Q ss_pred             CCCCCCC--CHHHHHHHHHHcC--CeEEEecCCCCCCHH
Q 031132           77 LAHRRAV--STEEGEQFAKEHG--LIFMEASAKTAQNVE  111 (165)
Q Consensus        77 l~~~~~~--~~~~~~~~~~~~~--~~~~~vSa~~~~~i~  111 (165)
                      +......  ...+++......+  .+++++||++|+|++
T Consensus       141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            8543211  2233333444433  479999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.23  E-value=1.5e-10  Score=99.04  Aligned_cols=111  Identities=13%  Similarity=0.127  Sum_probs=80.5

Q ss_pred             eCCEEEEEEEEeCCCchhhhh----------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132            4 IDNKPIKLQIWDTAGQESFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI   71 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~----------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv   71 (165)
                      +++....+++|||||..++..          ....++  ..+|++++|+|+++.+.   ...+...+.+   .+.|++++
T Consensus        45 ~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e---~giPvIvV  118 (772)
T PRK09554         45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLE---LGIPCIVA  118 (772)
T ss_pred             EEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH---cCCCEEEE
Confidence            445566789999999866532          233343  48999999999988533   2223333332   46899999


Q ss_pred             eeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           72 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        72 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +||+|+.+...+ ......+.+.++++++++||.+++|++++++.+.+..
T Consensus       119 lNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        119 LNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            999998644433 3455667778899999999999999999999887654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.23  E-value=3.7e-10  Score=98.68  Aligned_cols=105  Identities=26%  Similarity=0.284  Sum_probs=72.6

Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--
Q 031132           11 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--   85 (165)
Q Consensus        11 ~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--   85 (165)
                      +.||||||++.|..+....+..+|++++|+|+++.   .+++.+    ..+. .  .++|+++++||+|+........  
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I----~~lk-~--~~iPiIVViNKiDL~~~~~~~~~~  600 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI----NILR-Q--YKTPFVVAANKIDLIPGWNISEDE  600 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH----HHHH-H--cCCCEEEEEECCCCccccccccch
Confidence            79999999999988888888899999999999873   333332    2222 2  3689999999999853221100  


Q ss_pred             ----------HH-HHHH----------HHHc---------------CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           86 ----------EE-GEQF----------AKEH---------------GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        86 ----------~~-~~~~----------~~~~---------------~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                                .. ...+          ....               .++++++||++|+|+++++..|.....
T Consensus       601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                      00 0000          0111               356899999999999999987765433

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.21  E-value=3.4e-10  Score=82.27  Aligned_cols=104  Identities=19%  Similarity=0.160  Sum_probs=69.2

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      ++.+...+.|.||||..+|.......+..+|++++|+|++....- .....+..+..   .++| +++++||+|+.....
T Consensus        60 ~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~  135 (195)
T cd01884          60 YETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEE  135 (195)
T ss_pred             ecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHH
Confidence            444556789999999998877666678899999999999875322 22233333332   3566 778999999853221


Q ss_pred             C---CHHHHHHHHHHcC-----CeEEEecCCCCCCHH
Q 031132           83 V---STEEGEQFAKEHG-----LIFMEASAKTAQNVE  111 (165)
Q Consensus        83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~  111 (165)
                      .   ...++..+....+     ++++++||++|.|+.
T Consensus       136 ~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         136 LLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence            1   1123444444443     579999999999863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.19  E-value=5.1e-10  Score=83.48  Aligned_cols=107  Identities=24%  Similarity=0.168  Sum_probs=71.1

Q ss_pred             EEEEEEEeCCCchhhh-------hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHH----------------------
Q 031132            8 PIKLQIWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRE-TFNHLASWLED----------------------   57 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~----------------------   57 (165)
                      ...+++|||||..+..       ......++++|++++|+|+++.. ..+.+...+..                      
T Consensus        46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi  125 (233)
T cd01896          46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGI  125 (233)
T ss_pred             CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCE
Confidence            4568999999975322       23345789999999999998754 33323222210                      


Q ss_pred             ------------------HHHhc----------------------C---CCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH
Q 031132           58 ------------------ARQHA----------------------N---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE   94 (165)
Q Consensus        58 ------------------i~~~~----------------------~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~   94 (165)
                                        +++..                      .   ..+|+++|+||+|+.     ..++...++. 
T Consensus       126 ~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~-  199 (233)
T cd01896         126 NITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLAR-  199 (233)
T ss_pred             EEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhc-
Confidence                              00000                      0   236999999999984     2344444433 


Q ss_pred             cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           95 HGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        95 ~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                       ...++++||.++.|++++|+.+.+.+
T Consensus       200 -~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         200 -QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             -CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence             34589999999999999999887754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.17  E-value=6.8e-10  Score=82.34  Aligned_cols=107  Identities=17%  Similarity=0.107  Sum_probs=68.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC-
Q 031132            8 PIKLQIWDTAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-   84 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-   84 (165)
                      ...+.|.||||.++|.......+  ..+|++++|+|++.... .....++..+..   .++|+++++||+|+.+..... 
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~~~  158 (224)
T cd04165          83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANILQE  158 (224)
T ss_pred             CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHHHH
Confidence            34689999999998865433334  36899999999887532 222223333322   368999999999985432111 


Q ss_pred             -HHHHHHHHHH--------------------------cCCeEEEecCCCCCCHHHHHHHHH
Q 031132           85 -TEEGEQFAKE--------------------------HGLIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        85 -~~~~~~~~~~--------------------------~~~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                       ..+...+...                          ...+++.+||.+|+|++++...|.
T Consensus       159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence             1112222210                          123789999999999999887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.17  E-value=4.9e-10  Score=89.09  Aligned_cols=103  Identities=19%  Similarity=0.111  Sum_probs=72.0

Q ss_pred             EEEEEEeCCCchhh---------hhhhHhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            9 IKLQIWDTAGQESF---------RSITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~---------~~~~~~~~~~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      ..|.+.||+|.+..         .......+..||++|||+|.....+  -+.+..++.    .  .++|+++|+||+|-
T Consensus        51 ~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr----~--~~kpviLvvNK~D~  124 (444)
T COG1160          51 REFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR----R--SKKPVILVVNKIDN  124 (444)
T ss_pred             ceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h--cCCCEEEEEEcccC
Confidence            34899999998632         2223445778999999999987432  233333333    2  56999999999996


Q ss_pred             CCCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..     .+........+|+. ++.+||.+|.|+.+++++++..+-
T Consensus       125 ~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         125 LK-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             ch-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence            41     22222223345655 999999999999999999888764

>cd01859 MJ1464 MJ1464

Probab=99.15  E-value=1.6e-10  Score=80.85  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132           22 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME  101 (165)
Q Consensus        22 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  101 (165)
                      |+.++++.++++|++|+|+|++++..... ..+...+ ..  .+.|+++++||+|+.....  ......+....+.++++
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~~--~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-LE--LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-Hh--CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            56788899999999999999987543221 1111212 11  3689999999999843211  11111233345678999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHH
Q 031132          102 ASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus       102 vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999998877654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.14  E-value=5.4e-10  Score=80.70  Aligned_cols=93  Identities=23%  Similarity=0.165  Sum_probs=64.9

Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHH-----HHcC
Q 031132           22 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHG   96 (165)
Q Consensus        22 ~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~   96 (165)
                      +..++..+++++|++++|+|+++....     |...+.... .+.|+++|+||+|+.... ........+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence            477889999999999999999875421     111222121 468999999999986432 2233333332     2233


Q ss_pred             C---eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           97 L---IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        97 ~---~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +   +++++||+++.|++++++.|.+.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3   589999999999999999998775

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.12  E-value=5.2e-10  Score=82.78  Aligned_cols=69  Identities=23%  Similarity=0.272  Sum_probs=54.4

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ++.+.+.+|||||+.+|.......++.+|++++|+|++....... ...+.....   .++|+++++||+|+.
T Consensus        70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence            558899999999999999999999999999999999998654443 222222221   367999999999974

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.12  E-value=8.5e-10  Score=88.23  Aligned_cols=102  Identities=19%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRR   81 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~   81 (165)
                      .++.....+.||||||+++|......-+..+|++++|+|++...... ....+..+..   .++|.+ +++||+|+.+..
T Consensus        69 ~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~  144 (394)
T TIGR00485        69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDE  144 (394)
T ss_pred             EEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHH
Confidence            34455667899999999988665555567889999999998742221 2222333322   356755 689999986422


Q ss_pred             CCC---HHHHHHHHHHcC-----CeEEEecCCCCC
Q 031132           82 AVS---TEEGEQFAKEHG-----LIFMEASAKTAQ  108 (165)
Q Consensus        82 ~~~---~~~~~~~~~~~~-----~~~~~vSa~~~~  108 (165)
                      ...   ..+...++..++     ++++++||.++.
T Consensus       145 ~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       145 ELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            111   123445555554     679999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.12  E-value=1e-09  Score=87.81  Aligned_cols=101  Identities=19%  Similarity=0.169  Sum_probs=64.8

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      ++.....+.||||||+++|......-+..+|++++|+|++.... .....++..+..   .++| +++++||+|+.+...
T Consensus        70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~  145 (394)
T PRK12736         70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ---VGVPYLVVFLNKVDLVDDEE  145 (394)
T ss_pred             ecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCEEEEEEEecCCcchHH
Confidence            33445568899999998886655555678999999999987422 122223333322   3677 678899999853222


Q ss_pred             CC---HHHHHHHHHHcC-----CeEEEecCCCCC
Q 031132           83 VS---TEEGEQFAKEHG-----LIFMEASAKTAQ  108 (165)
Q Consensus        83 ~~---~~~~~~~~~~~~-----~~~~~vSa~~~~  108 (165)
                      ..   ..+...+....+     ++++++||++|.
T Consensus       146 ~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        146 LLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence            11   123444444444     479999999983

>COG1159 Era GTPase [General function prediction only]

Probab=99.12  E-value=7.9e-10  Score=83.68  Aligned_cols=110  Identities=16%  Similarity=0.128  Sum_probs=71.6

Q ss_pred             EEEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            8 PIKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ..++.|.||||..+        .......-++.+|+++||+|+++...-  ...++-...+.  .+.|+++++||.|...
T Consensus        53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~  128 (298)
T COG1159          53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVK  128 (298)
T ss_pred             CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCC
Confidence            66899999999754        222334457899999999999884322  22222222222  3579999999999865


Q ss_pred             CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ....-......+.....+ .++++||++|.|++.+.+.+...+
T Consensus       129 ~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~L  171 (298)
T COG1159         129 PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYL  171 (298)
T ss_pred             cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhC
Confidence            433112222222223333 599999999999999988776654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.1e-09  Score=88.61  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=79.1

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      -.+.|.||||+.-|.+|+..=..-+|++++|+.++|.-    +.+.+..+......++|++|++||+|.++.   +++.+
T Consensus       201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv  273 (683)
T KOG1145|consen  201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEKV  273 (683)
T ss_pred             CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHH
Confidence            35899999999999999998888999999999998852    112222233333358999999999997643   34444


Q ss_pred             HHHHHH-------cC--CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           89 EQFAKE-------HG--LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        89 ~~~~~~-------~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ......       +|  .+++++||++|+|++.+-++++-+.--
T Consensus       274 ~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~  317 (683)
T KOG1145|consen  274 KRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEV  317 (683)
T ss_pred             HHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHH
Confidence            333333       32  569999999999999988887765433

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.10  E-value=1.7e-09  Score=89.18  Aligned_cols=72  Identities=22%  Similarity=0.246  Sum_probs=54.7

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      .++++.+.+.+|||||+.+|.......+..+|++|+|+|+++.... ....++.....   .++|+++++||+|+.
T Consensus        73 ~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         73 QFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             EEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            4566678899999999999988777788999999999999875322 22333332222   478999999999974

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.10  E-value=1.2e-09  Score=76.11  Aligned_cols=105  Identities=19%  Similarity=0.273  Sum_probs=68.0

Q ss_pred             EEEEEeCCCc----------hhhhhhhHhhhc---CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132           10 KLQIWDTAGQ----------ESFRSITRSYYR---GAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus        10 ~~~l~Dt~G~----------~~~~~~~~~~~~---~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      .+.+|||+|.          +.+...+..++.   +.+++++++|.+...+  ...+..|+..      .+.|+++++||
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK  119 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTK  119 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEc
Confidence            6789999994          234555566655   4578999999886532  2223333332      25799999999


Q ss_pred             CCCCCCCCCCH--HHHHHHHH--HcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           75 CDLAHRRAVST--EEGEQFAK--EHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        75 ~Dl~~~~~~~~--~~~~~~~~--~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +|+........  ........  ....+++++||+++.|+.+++++|.+.
T Consensus       120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            99853321111  11222222  234568999999999999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.09  E-value=6.3e-10  Score=90.18  Aligned_cols=105  Identities=19%  Similarity=0.184  Sum_probs=73.4

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH-------HHHHHHHHHHHHhcCCCC-eEEEEeeCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLASWLEDARQHANANM-TIMLIGNKC   75 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~-------~~~~~~~~~i~~~~~~~~-p~ivv~nK~   75 (165)
                      +..+...+.+.|+||+++|.......+..+|++|+|+|+++. .+       ......+..+..   .++ ++++++||+
T Consensus        80 ~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKm  155 (447)
T PLN00043         80 FETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKM  155 (447)
T ss_pred             ecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcc
Confidence            455567899999999999988888889999999999999873 22       233333332222   356 468889999


Q ss_pred             CCCCCC--C----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 031132           76 DLAHRR--A----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEE  112 (165)
Q Consensus        76 Dl~~~~--~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~  112 (165)
                      |+....  .    ...+++..++...+     ++++++||++|+|+.+
T Consensus       156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            975211  0    11334555666665     5699999999999854

>cd04169 RF3 RF3 subfamily

Probab=99.08  E-value=2.2e-09  Score=81.63  Aligned_cols=73  Identities=21%  Similarity=0.251  Sum_probs=55.5

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      .++++.+.+.+|||+|+.+|.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        65 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          65 QFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             EEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            5667788999999999999888777788999999999999875322 22233333222   4689999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK09866 hypothetical protein; Provisional

Probab=99.07  E-value=3.4e-09  Score=87.97  Aligned_cols=109  Identities=16%  Similarity=0.156  Sum_probs=71.9

Q ss_pred             EEEEEEeCCCchh-----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132            9 IKLQIWDTAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         9 ~~~~l~Dt~G~~~-----~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      .++.|.||||...     ........+..+|+|+||+|++...+..+. ..+..+... +...|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-GQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence            3678999999854     233344568999999999999875333321 222333322 123599999999998543322


Q ss_pred             CHHHHHHHHH----HcCC---eEEEecCCCCCCHHHHHHHHHH
Q 031132           84 STEEGEQFAK----EHGL---IFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        84 ~~~~~~~~~~----~~~~---~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ..+....+..    ..++   .++++||+.|.|++.+++.|..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            3444444432    2222   4999999999999999998876

>PRK12289 GTPase RsgA; Reviewed

Probab=99.06  E-value=6.8e-10  Score=87.29  Aligned_cols=92  Identities=20%  Similarity=0.219  Sum_probs=67.1

Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 031132           23 RSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME  101 (165)
Q Consensus        23 ~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  101 (165)
                      ..+.+..+.++|.+++|+|+.++. +...+..|+..+..   .++|++||+||+||.....  ..........+++++++
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence            445556689999999999998764 44566677765532   4789999999999953211  12222334467889999


Q ss_pred             ecCCCCCCHHHHHHHHHH
Q 031132          102 ASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus       102 vSa~~~~~i~~l~~~l~~  119 (165)
                      +||.++.|++++++.+..
T Consensus       155 iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        155 ISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEcCCCCCHHHHhhhhcc
Confidence            999999999999988754

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.06  E-value=1.6e-09  Score=87.86  Aligned_cols=111  Identities=17%  Similarity=0.154  Sum_probs=72.9

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STE   86 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~   86 (165)
                      ..+.|.|+||+++|-.....-+..+|++++|+|++...........+..+. .. .-.++++++||+|+......  ..+
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~l-gi~~iIVvlNKiDlv~~~~~~~~~~  194 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IM-KLKHIIILQNKIDLVKEAQAQDQYE  194 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-Hc-CCCcEEEEEecccccCHHHHHHHHH
Confidence            368999999999986655556779999999999987421122223333222 21 22468899999998532211  011


Q ss_pred             HHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           87 EGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        87 ~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ++..+...   ...+++++||.+|+|++.+++.|...+
T Consensus       195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            22222222   256899999999999999998887644

>PRK13768 GTPase; Provisional

Probab=99.04  E-value=1.9e-09  Score=81.30  Aligned_cols=111  Identities=20%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             EEEEEeCCCchhh---hhhhHhhhcC-----CcEEEEEEeCCChhhHHHH--HHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132           10 KLQIWDTAGQESF---RSITRSYYRG-----AAGALLVYDITRRETFNHL--ASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus        10 ~~~l~Dt~G~~~~---~~~~~~~~~~-----ad~vi~v~D~~~~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      .+.+||++|+.+.   +..++.+++.     ++++++|+|++........  ..|+....... .+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence            5789999998663   4444444333     8999999999764332222  22222222111 4789999999999864


Q ss_pred             CCCCCHH--HHH------------------------HHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 RRAVSTE--EGE------------------------QFAKEHG--LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~--~~~------------------------~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .......  ...                        ......+  .+++++|+.+++|+++++++|.+.+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            3321100  000                        0122233  5789999999999999999987765

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.04  E-value=2.8e-09  Score=73.22  Aligned_cols=99  Identities=22%  Similarity=0.204  Sum_probs=72.8

Q ss_pred             EEEeCCCc----hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132           12 QIWDTAGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus        12 ~l~Dt~G~----~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      .+.||||.    ..+....-....+||.|++|.|++++.+...     ..+...  -+.|+|=|+||+|+.. .....+.
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~  110 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIER  110 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHH
Confidence            46899995    4455555556679999999999998643211     112222  3589999999999963 2345566


Q ss_pred             HHHHHHHcCCe-EEEecCCCCCCHHHHHHHHH
Q 031132           88 GEQFAKEHGLI-FMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        88 ~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~  118 (165)
                      ...+....|+. +|++|+.+|+|++++.+.|.
T Consensus       111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            67777777876 89999999999999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.03  E-value=1.3e-09  Score=83.60  Aligned_cols=86  Identities=17%  Similarity=0.115  Sum_probs=66.1

Q ss_pred             hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCC
Q 031132           28 SYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT  106 (165)
Q Consensus        28 ~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  106 (165)
                      ..+.++|.+++|+|++++. ++..+..|+..+...   ++|+++|+||+||....  ............+++++++||++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~  148 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKT  148 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCC
Confidence            3488999999999999887 778888888766543   68999999999995431  11122333445788999999999


Q ss_pred             CCCHHHHHHHHH
Q 031132          107 AQNVEEAFIKTA  118 (165)
Q Consensus       107 ~~~i~~l~~~l~  118 (165)
                      +.|+++++..|.
T Consensus       149 g~gi~~L~~~L~  160 (287)
T cd01854         149 GEGLDELREYLK  160 (287)
T ss_pred             CccHHHHHhhhc
Confidence            999999988765

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.02  E-value=2.7e-09  Score=85.13  Aligned_cols=112  Identities=21%  Similarity=0.220  Sum_probs=77.2

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhh--------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      .++-.++.+.+.||+|.++....        ....++.||.+++|+|.+.+.+-.+...    +. ....+.|+++|.||
T Consensus       259 ~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~----~~-~~~~~~~~i~v~NK  333 (454)
T COG0486         259 DINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL----IE-LLPKKKPIIVVLNK  333 (454)
T ss_pred             EEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH----HH-hcccCCCEEEEEec
Confidence            35556677999999998653322        2345789999999999998522211111    11 12257899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .||.........     ....+.+++.+|+++|+|++.+.+.|...+...
T Consensus       334 ~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         334 ADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             hhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            999654332111     112355799999999999999999988877766

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.02  E-value=3.5e-09  Score=82.50  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=92.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh-------HHHHHHHHHHHHHhcC----CCCeEEE
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLASWLEDARQHAN----ANMTIML   70 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s-------~~~~~~~~~~i~~~~~----~~~p~iv   70 (165)
                      +.+..+...+.++|++||...+..|-+++.+++++|||++++..+.       .+.+..-+..+...++    .+.++++
T Consensus       188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL  267 (354)
T KOG0082|consen  188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL  267 (354)
T ss_pred             EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence            4456666889999999999999999999999999999999986432       3344455555555554    5789999


Q ss_pred             EeeCCCCCCC---------------CCCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           71 IGNKCDLAHR---------------RAVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        71 v~nK~Dl~~~---------------~~~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ++||.||-.+               +.-..+++..+...          ..+.++.+.|.+..+|+.+|.++.+.|+...
T Consensus       268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            9999998422               11122232222211          1344778899999999999999999999876


Q ss_pred             hcC
Q 031132          126 QDG  128 (165)
Q Consensus       126 ~~~  128 (165)
                      ...
T Consensus       348 lk~  350 (354)
T KOG0082|consen  348 LKD  350 (354)
T ss_pred             HHH
Confidence            653

>PRK12735 elongation factor Tu; Reviewed

Probab=99.02  E-value=3.9e-09  Score=84.50  Aligned_cols=102  Identities=17%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~   82 (165)
                      ++.+...+.|+||||+++|......-+..+|++++|+|+++... .....++..+..   .++|.+ +++||+|+.....
T Consensus        70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~  145 (396)
T PRK12735         70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEE  145 (396)
T ss_pred             EcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHH
Confidence            33445578999999998886655566778999999999987432 222233333322   357865 5799999853221


Q ss_pred             C---CHHHHHHHHHHcC-----CeEEEecCCCCCC
Q 031132           83 V---STEEGEQFAKEHG-----LIFMEASAKTAQN  109 (165)
Q Consensus        83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~  109 (165)
                      .   ...++..+...++     ++++++||.+|.|
T Consensus       146 ~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence            1   1123444454443     5789999999854

>PRK13351 elongation factor G; Reviewed

Probab=99.02  E-value=3e-09  Score=90.64  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=56.5

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +++....+.+|||||+.++...+..+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+.
T Consensus        68 ~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~  138 (687)
T PRK13351         68 CDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV  138 (687)
T ss_pred             EEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence            445567899999999999999999999999999999999987655543333 33322   368999999999985

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.01  E-value=5.3e-09  Score=83.27  Aligned_cols=110  Identities=24%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             EEEEEEEeCCCchh----------hhh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            8 PIKLQIWDTAGQES----------FRS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~----------~~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .-.+.|.||+|..+          |.- -....+..+|++++|+|++.+.+-.+.. ....+..   .+.+++++.||+|
T Consensus       225 ~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWD  300 (444)
T COG1160         225 GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWD  300 (444)
T ss_pred             CeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccc
Confidence            34478999999753          222 1234577899999999999875444331 2222222   4789999999999


Q ss_pred             CCCCCCCCHHHHHHHHH----Hc-CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           77 LAHRRAVSTEEGEQFAK----EH-GLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~----~~-~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +.+......++......    .. ..+.+++||.++.++..+|+++....
T Consensus       301 l~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~  350 (444)
T COG1160         301 LVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIY  350 (444)
T ss_pred             cCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence            86654344444332222    22 35699999999999999999887643

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.00  E-value=3.5e-09  Score=84.99  Aligned_cols=105  Identities=22%  Similarity=0.164  Sum_probs=67.1

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      ..+...+.||||||+++|......-+..+|++++|+|++....-. ....+..+...  ...++++++||+|+.......
T Consensus        76 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~  152 (406)
T TIGR02034        76 STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL--GIRHVVLAVNKMDLVDYDEEV  152 (406)
T ss_pred             ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc--CCCcEEEEEEecccccchHHH
Confidence            344557899999999998665556688999999999998653211 11122222222  224688899999985422111


Q ss_pred             ----HHHHHHHHHHcC---CeEEEecCCCCCCHHH
Q 031132           85 ----TEEGEQFAKEHG---LIFMEASAKTAQNVEE  112 (165)
Q Consensus        85 ----~~~~~~~~~~~~---~~~~~vSa~~~~~i~~  112 (165)
                          .++...+....+   ++++++||++|+|+.+
T Consensus       153 ~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       153 FENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence                112222333344   4699999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.98  E-value=1.1e-09  Score=89.10  Aligned_cols=118  Identities=25%  Similarity=0.302  Sum_probs=91.5

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcC--CCCeEEEEeeCCCCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHAN--ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~-~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~   82 (165)
                      -..+...+.||+..+.-+......++.||++.+||+++++.+++.+.. |+..+++...  .+.|+|+|+||+|+.....
T Consensus        53 Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~  132 (625)
T KOG1707|consen   53 PENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN  132 (625)
T ss_pred             cCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence            345668899998777666777888999999999999999999998877 7777777664  5799999999999865444


Q ss_pred             CCHHH-HHHHHHHc-CCe-EEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           83 VSTEE-GEQFAKEH-GLI-FMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        83 ~~~~~-~~~~~~~~-~~~-~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+.+. ...+..++ .+. +++|||++..++.++|+...+.++.
T Consensus       133 ~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  133 NSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIH  176 (625)
T ss_pred             cchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence            43333 22223333 344 8999999999999999998887765

>PRK12288 GTPase RsgA; Reviewed

Probab=98.98  E-value=3e-09  Score=83.57  Aligned_cols=87  Identities=15%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEecCCCCC
Q 031132           30 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAKEHGLIFMEASAKTAQ  108 (165)
Q Consensus        30 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~~~  108 (165)
                      ..|+|.+++|++.+...++..+..|+..+..   .++|++||+||+||...... ............+++++++||.+++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888899999999875542   46899999999999542211 1122223344678899999999999


Q ss_pred             CHHHHHHHHHH
Q 031132          109 NVEEAFIKTAA  119 (165)
Q Consensus       109 ~i~~l~~~l~~  119 (165)
                      |++++++.|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999988754

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.97  E-value=2.7e-09  Score=87.17  Aligned_cols=107  Identities=21%  Similarity=0.122  Sum_probs=66.8

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      +..+..++.||||||+++|......-+..+|++++|+|++....-. ....+..+...  .-.|+++++||+|+......
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLL--GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHh--CCCceEEEEEeeccccchhH
Confidence            3344567899999999888654444579999999999998653211 11111112212  12478899999998632211


Q ss_pred             CHHH----HHHHHHHc----CCeEEEecCCCCCCHHHH
Q 031132           84 STEE----GEQFAKEH----GLIFMEASAKTAQNVEEA  113 (165)
Q Consensus        84 ~~~~----~~~~~~~~----~~~~~~vSa~~~~~i~~l  113 (165)
                      ....    ...+....    ..+++++||++|+|+.++
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1111    22223333    366999999999999865

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.96  E-value=9.4e-09  Score=78.47  Aligned_cols=107  Identities=19%  Similarity=0.201  Sum_probs=79.8

Q ss_pred             EEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC
Q 031132           11 LQIWDTAGQESF-------RSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA   78 (165)
Q Consensus        11 ~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~   78 (165)
                      +.+=|.||.-+-       .......++.++.++||+|++..   +-++.+..++.++..+..  ...|.++|+||+|++
T Consensus       246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            888999997542       22233447789999999999988   778888887777776654  578999999999985


Q ss_pred             CCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +.   ......+++....-+ ++++||++++|+.++++.|.+.
T Consensus       326 ea---e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  326 EA---EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             hH---HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence            21   122235556555544 9999999999999999887653

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.96  E-value=3.5e-09  Score=80.65  Aligned_cols=72  Identities=22%  Similarity=0.181  Sum_probs=54.1

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +..+...+.||||||..++...+...++.+|++++|+|+++...-. ...++..+..   .++|+++++||+|+.+
T Consensus        59 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          59 CFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             EEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            3445677899999999999888899999999999999998753222 2223333322   4689999999999854

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK12740 elongation factor G; Reviewed

Probab=98.95  E-value=1.2e-08  Score=86.79  Aligned_cols=71  Identities=21%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +..+.+.+.+|||||+.++...+...+..+|++++|+|++........ ..+..+..   .++|+++++||+|+.
T Consensus        55 ~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         55 CEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             EEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence            444567899999999999888888889999999999999886554433 22222222   468999999999985

>PRK00098 GTPase RsgA; Reviewed

Probab=98.94  E-value=2.7e-09  Score=82.39  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             hcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCC
Q 031132           30 YRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ  108 (165)
Q Consensus        30 ~~~ad~vi~v~D~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  108 (165)
                      +.++|++++|+|++++... ..+..|+..+..   .++|+++|+||+||..... ............+++++++||+++.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            4899999999999876543 345666665543   4689999999999953211 1122334455678899999999999


Q ss_pred             CHHHHHHHH
Q 031132          109 NVEEAFIKT  117 (165)
Q Consensus       109 ~i~~l~~~l  117 (165)
                      |++++++.+
T Consensus       154 gi~~L~~~l  162 (298)
T PRK00098        154 GLDELKPLL  162 (298)
T ss_pred             cHHHHHhhc
Confidence            999998876

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.93  E-value=3.3e-09  Score=78.84  Aligned_cols=116  Identities=21%  Similarity=0.336  Sum_probs=74.6

Q ss_pred             EEEEEEeCCCchhhh-----hhhHhhhcCCcEEEEEEeCCChhhH---HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFR-----SITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~-----~~~~~~~~~ad~vi~v~D~~~~~s~---~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++||.||+..+-     ......++++.++|||+|+.+.+-.   ..+...+..+.+.. ++..+.+++.|+|+..+
T Consensus        48 ~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~  126 (232)
T PF04670_consen   48 LPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSE  126 (232)
T ss_dssp             CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-H
T ss_pred             cEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCH
Confidence            478999999997542     3467889999999999999854333   33333444444443 78899999999998532


Q ss_pred             CC--CC----HHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           81 RA--VS----TEEGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        81 ~~--~~----~~~~~~~~~~~~---~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ..  ..    ...+...+...+   +.++.+|..+ +.+.++|..+++.++....
T Consensus       127 ~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  127 DEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence            11  11    112222334445   6688888887 6999999999988876443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.93  E-value=8.4e-09  Score=81.61  Aligned_cols=95  Identities=26%  Similarity=0.334  Sum_probs=69.0

Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHH----HHHH
Q 031132           19 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FAKE   94 (165)
Q Consensus        19 ~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~   94 (165)
                      .++|..+...+++.++++++|+|+.+..     ..|...+.... .+.|+++|+||+|+... ....+....    ++..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            4578888999999999999999997643     22334444333 36799999999998543 233333333    3555


Q ss_pred             cCC---eEEEecCCCCCCHHHHHHHHHHH
Q 031132           95 HGL---IFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        95 ~~~---~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .++   .++++||+++.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   38999999999999999988654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>CHL00071 tufA elongation factor Tu

Probab=98.91  E-value=1.6e-08  Score=81.34  Aligned_cols=103  Identities=16%  Similarity=0.123  Sum_probs=67.1

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      ++.+..++.|.||||+.+|......-+..+|++++|+|++.... ......+..+..   .++| +++++||+|+.....
T Consensus        70 ~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~  145 (409)
T CHL00071         70 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEE  145 (409)
T ss_pred             EccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHH
Confidence            33445568899999998876655566789999999999986432 222233333222   3578 778999999864222


Q ss_pred             C---CHHHHHHHHHHcC-----CeEEEecCCCCCCH
Q 031132           83 V---STEEGEQFAKEHG-----LIFMEASAKTAQNV  110 (165)
Q Consensus        83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~i  110 (165)
                      .   ...++..+....+     ++++++||.+|.|+
T Consensus       146 ~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        146 LLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            1   1123444444443     57999999998754

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=6.4e-09  Score=72.34  Aligned_cols=111  Identities=17%  Similarity=0.224  Sum_probs=84.1

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      .+++++.+|.+|+..-+..|..|+..+|+++|++|+.|.+.+.+.+..+..+..... ..+|+++.+||+|.+..  .+.
T Consensus        62 g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se  139 (193)
T KOG0077|consen   62 GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASE  139 (193)
T ss_pred             cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccH
Confidence            456789999999999999999999999999999999999999999888877765543 68999999999998643  344


Q ss_pred             HHHHHHHH---Hc-----------C---CeEEEecCCCCCCHHHHHHHHHH
Q 031132           86 EEGEQFAK---EH-----------G---LIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        86 ~~~~~~~~---~~-----------~---~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ++.+....   ..           +   +..+.||...+.+.-+.|.|+-.
T Consensus       140 ~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  140 DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence            44332211   11           1   23566787777777777776654

>COG2262 HflX GTPases [General function prediction only]

Probab=98.90  E-value=5.3e-08  Score=76.69  Aligned_cols=121  Identities=18%  Similarity=0.110  Sum_probs=83.3

Q ss_pred             EEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132           10 KLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus        10 ~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      .+.+.||-|.-+         |++..+ ....||.++.|+|++++.....+......+....-..+|+++|.||+|+...
T Consensus       241 ~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~  319 (411)
T COG2262         241 KVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED  319 (411)
T ss_pred             eEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence            477889998743         333333 3568999999999999976666666555555543356899999999997543


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCC
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES  136 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~  136 (165)
                      ..     ....+....-..+.+||++|+|++.+...|...+........+..+...
T Consensus       320 ~~-----~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~  370 (411)
T COG2262         320 EE-----ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTD  370 (411)
T ss_pred             hh-----hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCccc
Confidence            22     1111111111489999999999999999999988876665555554433

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.87  E-value=1.9e-08  Score=85.00  Aligned_cols=104  Identities=22%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      .....+.|+||||+++|......-+..+|++++|+|++....- .....+..+...  ...+++|++||+|+.+......
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence            3444678999999998866555567899999999999764321 111222222222  2357889999999853211111


Q ss_pred             ----HHHHHHHHHcCC---eEEEecCCCCCCHHH
Q 031132           86 ----EEGEQFAKEHGL---IFMEASAKTAQNVEE  112 (165)
Q Consensus        86 ----~~~~~~~~~~~~---~~~~vSa~~~~~i~~  112 (165)
                          .+...+....++   +++++||++|+|+.+
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                122233344453   589999999999874

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.87  E-value=2.9e-08  Score=80.61  Aligned_cols=106  Identities=20%  Similarity=0.143  Sum_probs=69.9

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCe-EEEEeeCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLASWLEDARQHANANMT-IMLIGNKCD   76 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~D   76 (165)
                      ++.....+.|.||||+.+|......-+..+|++++|+|++...-   +   ......+..+..   .++| +++++||+|
T Consensus        80 ~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD  156 (446)
T PTZ00141         80 FETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMD  156 (446)
T ss_pred             EccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccc
Confidence            45566789999999999997777777889999999999986421   1   123333333222   3566 678999999


Q ss_pred             CCCC--CC----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 031132           77 LAHR--RA----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEE  112 (165)
Q Consensus        77 l~~~--~~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~  112 (165)
                      +...  ..    ....++..+....+     ++++++||.+|+|+.+
T Consensus       157 ~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        157 DKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            5321  10    11223333333333     5699999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=98.87  E-value=4.4e-08  Score=78.46  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=64.3

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCCC-
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAV-   83 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~-   83 (165)
                      .+...+.|.||||+.+|......-+..+|++++|+|++.... .....++..+..   .++|.+ +++||+|+.+.... 
T Consensus        72 ~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~  147 (396)
T PRK00049         72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELL  147 (396)
T ss_pred             CCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHH
Confidence            344568899999998886655566789999999999987432 222233333322   357876 58999998532211 


Q ss_pred             --CHHHHHHHHHHcC-----CeEEEecCCCCCC
Q 031132           84 --STEEGEQFAKEHG-----LIFMEASAKTAQN  109 (165)
Q Consensus        84 --~~~~~~~~~~~~~-----~~~~~vSa~~~~~  109 (165)
                        ...++..+....+     ++++++||.++.+
T Consensus       148 ~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        148 ELVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence              1122333343333     5789999998764

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.86  E-value=6.6e-09  Score=78.98  Aligned_cols=106  Identities=19%  Similarity=0.175  Sum_probs=67.9

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      ++.+.+.+.+|||+|..++...+...+..+|++++|+|+++....... ..+..+..   .++|.++++||+|+....  
T Consensus        59 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~~--  132 (268)
T cd04170          59 LEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERAD--  132 (268)
T ss_pred             EEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCCC--
Confidence            334456789999999998888888899999999999999886544322 22222222   468999999999986431  


Q ss_pred             CHHHHHHHHHHcCCeEEE--ecCCCCCCHHHHHH
Q 031132           84 STEEGEQFAKEHGLIFME--ASAKTAQNVEEAFI  115 (165)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~--vSa~~~~~i~~l~~  115 (165)
                      .......+...++.+++.  +...++.++..+.+
T Consensus       133 ~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd  166 (268)
T cd04170         133 FDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVD  166 (268)
T ss_pred             HHHHHHHHHHHhCCCeEEEEecccCCCceeEEEE
Confidence            122233333444554333  33455555444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03127 Elongation factor Tu; Provisional

Probab=98.82  E-value=5.6e-08  Score=78.92  Aligned_cols=113  Identities=13%  Similarity=0.102  Sum_probs=66.8

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      ++.+..++.|.||||+.+|-.....-+..+|++++|+|++.... ......+..+..   .++| +++++||+|+.+...
T Consensus       119 ~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~  194 (447)
T PLN03127        119 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEE  194 (447)
T ss_pred             EcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHH
Confidence            44445678999999998875544445567999999999986532 222222332222   3678 578899999864221


Q ss_pred             CCH---HHHHHHHHHc-----CCeEEEecCC---CCCC-------HHHHHHHHHHH
Q 031132           83 VST---EEGEQFAKEH-----GLIFMEASAK---TAQN-------VEEAFIKTAAT  120 (165)
Q Consensus        83 ~~~---~~~~~~~~~~-----~~~~~~vSa~---~~~~-------i~~l~~~l~~~  120 (165)
                      ...   .+...+....     .++++++||.   ++.|       +..+++.+...
T Consensus       195 ~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        195 LLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence            111   1222333322     2568888875   5555       45555555443

>PLN03126 Elongation factor Tu; Provisional

Probab=98.79  E-value=3.7e-08  Score=80.52  Aligned_cols=103  Identities=15%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      ++.+...+.|+|+||+++|-.....-+..+|++++|+|+++... .....++..+..   .++| +++++||+|+.....
T Consensus       139 ~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~  214 (478)
T PLN03126        139 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEE  214 (478)
T ss_pred             EecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEecccccCHHH
Confidence            33445578999999999987666666778999999999987532 223333333322   3677 778999999854221


Q ss_pred             C---CHHHHHHHHHHc-----CCeEEEecCCCCCCH
Q 031132           83 V---STEEGEQFAKEH-----GLIFMEASAKTAQNV  110 (165)
Q Consensus        83 ~---~~~~~~~~~~~~-----~~~~~~vSa~~~~~i  110 (165)
                      .   ...++..+....     .++++++||.++.|+
T Consensus       215 ~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        215 LLELVELEVRELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence            1   112334444443     457999999988643

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.79  E-value=2.9e-08  Score=79.34  Aligned_cols=115  Identities=18%  Similarity=0.257  Sum_probs=79.9

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHhcC-CCCeEEEEeeCC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLASWLEDARQHAN-ANMTIMLIGNKC   75 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~----------s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~   75 (165)
                      ....+.|+|++|+...+..|.+++.++++||||+++++.+          .+.+....+..+..... .+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            4456899999999999999999999999999999987532          24444444544443332 579999999999


Q ss_pred             CCCC----C------------CC--CCHHHHHHHHHH------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           76 DLAH----R------------RA--VSTEEGEQFAKE------------HGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        76 Dl~~----~------------~~--~~~~~~~~~~~~------------~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      |+..    .            +.  -+.+.+..+...            ..+.++.++|.+..++..+|+.+.+.|
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9621    1            11  223344443332            112477899999999999999988764

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.79  E-value=3.3e-08  Score=69.11  Aligned_cols=84  Identities=17%  Similarity=0.058  Sum_probs=54.5

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHH-HHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132           34 AGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  112 (165)
Q Consensus        34 d~vi~v~D~~~~~s~~~~~~~~~-~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  112 (165)
                      |++++|+|++++.+....  ++. .....  .++|+++|+||+|+.....+ ......+....+..++.+||.++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            789999999886544321  222 11111  46899999999998432111 1111122223355689999999999999


Q ss_pred             HHHHHHHHHH
Q 031132          113 AFIKTAATIY  122 (165)
Q Consensus       113 l~~~l~~~i~  122 (165)
                      +++.+.+...
T Consensus        76 L~~~i~~~~~   85 (155)
T cd01849          76 KESAFTKQTN   85 (155)
T ss_pred             HHHHHHHHhH
Confidence            9999887654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.77  E-value=2.9e-08  Score=69.51  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             hhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCC
Q 031132           29 YYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT  106 (165)
Q Consensus        29 ~~~~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  106 (165)
                      .++.+|++++|+|++++..  ...+..++.   .. ..+.|+++|+||+|+..+... ......+...+....+.+||++
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            4679999999999988632  223333332   22 245899999999998532111 1111112222222357899999


Q ss_pred             CCCHHHHHHHHHHHH
Q 031132          107 AQNVEEAFIKTAATI  121 (165)
Q Consensus       107 ~~~i~~l~~~l~~~i  121 (165)
                      +.|++++++.+....
T Consensus        80 ~~~~~~L~~~l~~~~   94 (157)
T cd01858          80 PFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999887643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12739 elongation factor G; Reviewed

Probab=98.77  E-value=1.3e-07  Score=80.62  Aligned_cols=71  Identities=21%  Similarity=0.185  Sum_probs=53.0

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +..+...+.|+||||..++...+...++.+|++++|+|+++...... ...+..+..   .++|.++++||+|+.
T Consensus        68 ~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~  138 (691)
T PRK12739         68 CFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI  138 (691)
T ss_pred             EEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence            33445678999999999888888888999999999999987643322 222332222   468999999999985

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.76  E-value=7.8e-08  Score=74.81  Aligned_cols=53  Identities=13%  Similarity=0.115  Sum_probs=36.2

Q ss_pred             CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHH-HHHHHH
Q 031132           65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFI-KTAATI  121 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~-~l~~~i  121 (165)
                      .+|+++++||.|+....    +....+.... ..+++.+||+.+.++.++.+ .+.+.+
T Consensus       214 ~KPvI~VlNK~Dl~~~~----~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l  268 (318)
T cd01899         214 SKPMVIAANKADIPDAE----NNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD  268 (318)
T ss_pred             CCcEEEEEEHHHccChH----HHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence            37999999999974321    1111222233 45699999999999999887 466655

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.75  E-value=6.1e-08  Score=80.14  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=55.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +.++++.+.+.+|||||+.+|.......+..+|++|+|+|+++... .....++.... .  .++|+++++||+|+..
T Consensus        73 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~-~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        73 MQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR-L--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH-h--cCCCEEEEEECccccC
Confidence            3567778889999999999887766667899999999999987421 12233333222 2  4689999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.75  E-value=8.1e-08  Score=81.94  Aligned_cols=72  Identities=21%  Similarity=0.157  Sum_probs=54.8

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +..++..+.||||||+.++...+...++.+|++++|+|+++....... .++..+..   .++|+++++||+|+..
T Consensus        70 ~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        70 VFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             EEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            334567799999999998888888899999999999999886544322 23333322   3689999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.72  E-value=7.5e-08  Score=68.89  Aligned_cols=70  Identities=27%  Similarity=0.410  Sum_probs=49.9

Q ss_pred             EEEEEeCCCchhhhhhhHh---hhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCC
Q 031132           10 KLQIWDTAGQESFRSITRS---YYRGAAGALLVYDITR-RETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAH   79 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~---~~~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~   79 (165)
                      .+.+.|+||+.+.+.....   +...+.+||||+|++. .....++.+++-.+.....   ..+|++|+.||.|+..
T Consensus        50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            5789999999998774433   4889999999999985 4456666666655544332   5789999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.72  E-value=8e-08  Score=71.81  Aligned_cols=123  Identities=13%  Similarity=0.184  Sum_probs=85.1

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcC-CCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv   71 (165)
                      .+.-..+.|+++|++||...+..|-+++.+..++|||+.++..          +.+.+...++..++...- ..+.+|++
T Consensus       196 ~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlF  275 (379)
T KOG0099|consen  196 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILF  275 (379)
T ss_pred             EEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEE
Confidence            4555667899999999999999999999999999999998753          223444445555554432 45789999


Q ss_pred             eeCCCCCCC----------------------------CCCCHHH--HHHHHH----H---------cCCeEEEecCCCCC
Q 031132           72 GNKCDLAHR----------------------------RAVSTEE--GEQFAK----E---------HGLIFMEASAKTAQ  108 (165)
Q Consensus        72 ~nK~Dl~~~----------------------------~~~~~~~--~~~~~~----~---------~~~~~~~vSa~~~~  108 (165)
                      +||.|+..+                            ...++.-  ...+..    .         +.+.++++.|.+.+
T Consensus       276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe  355 (379)
T KOG0099|consen  276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE  355 (379)
T ss_pred             ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence            999998421                            0011111  111111    1         12346789999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 031132          109 NVEEAFIKTAATIYKKI  125 (165)
Q Consensus       109 ~i~~l~~~l~~~i~~~~  125 (165)
                      ||..+|+...+.|....
T Consensus       356 nIrrVFnDcrdiIqr~h  372 (379)
T KOG0099|consen  356 NIRRVFNDCRDIIQRMH  372 (379)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999888777643

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.70  E-value=2.1e-07  Score=71.53  Aligned_cols=120  Identities=20%  Similarity=0.223  Sum_probs=81.4

Q ss_pred             eCCEEEEEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031132            4 IDNKPIKLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITR--RETFNHLASWLEDARQHANANMTIMLIG   72 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~   72 (165)
                      ++.+..++|+.||||.-+         ........-.=+++|+|+||++.  ..+.++...++..+....  ..|+++|.
T Consensus       210 fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~  287 (346)
T COG1084         210 FERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVI  287 (346)
T ss_pred             eecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEE
Confidence            455667899999999632         11111222224689999999986  356788888888887775  48999999


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           73 NKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        73 nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ||.|+.....+  ++.......- +.....+++..+.+++.+-..+.....+...+
T Consensus       288 nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~~~e  341 (346)
T COG1084         288 NKIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLE  341 (346)
T ss_pred             ecccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhchhhh
Confidence            99998543322  2222223333 34488899999999888888877776655444

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.70  E-value=1.6e-07  Score=71.79  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=60.8

Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecC
Q 031132           25 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  104 (165)
Q Consensus        25 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  104 (165)
                      .....++.+|++++|+|+.++.+....  .+..+.    .+.|+++|+||+|+.+...  ...........+.+++.+||
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa   85 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA   85 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence            345568899999999999876433211  111111    2579999999999843211  11112223334667899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 031132          105 KTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus       105 ~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .++.|++++++.+.+.+...
T Consensus        86 ~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        86 KKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCcccHHHHHHHHHHHHHHh
Confidence            99999999999888776443

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.68  E-value=1.2e-07  Score=72.23  Aligned_cols=113  Identities=18%  Similarity=0.116  Sum_probs=68.8

Q ss_pred             EEEEEEEEeCCCchh------hhhh------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            7 KPIKLQIWDTAGQES------FRSI------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~------~~~~------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      +..++.|+||||.-.      +..+      ....+.+||.+++|+|+++....- -...+..+..+  ..+|-+++.||
T Consensus       118 ~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~y--s~ips~lvmnk  194 (379)
T KOG1423|consen  118 GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEY--SKIPSILVMNK  194 (379)
T ss_pred             CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHH--hcCCceeeccc
Confidence            345789999999631      1111      123367899999999999632211 11223334444  46899999999


Q ss_pred             CCCCCC-------------CCCCHHHHHHHHHHc------------CC---e-EEEecCCCCCCHHHHHHHHHHHHH
Q 031132           75 CDLAHR-------------RAVSTEEGEQFAKEH------------GL---I-FMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        75 ~Dl~~~-------------~~~~~~~~~~~~~~~------------~~---~-~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .|....             .+++........+..            |+   . +|.+||++|+|++++-++|+.+..
T Consensus       195 id~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  195 IDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             hhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            997432             222211111111111            12   2 899999999999999998876653

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.64  E-value=2.1e-07  Score=74.50  Aligned_cols=117  Identities=17%  Similarity=0.207  Sum_probs=80.2

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .++++.+.+.+.||||+-+|.-.-+..++-.|++++++|+...+ ....+..+.....   .+.+.|||+||+|.+..+.
T Consensus        62 av~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp  137 (603)
T COG1217          62 AVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA---LGLKPIVVINKIDRPDARP  137 (603)
T ss_pred             eeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCH
Confidence            46677788999999999999998899999999999999998753 2233333333333   3677788899999875442


Q ss_pred             C-CHHHHHHHH-------HHcCCeEEEecCCCCC----------CHHHHHHHHHHHHHH
Q 031132           83 V-STEEGEQFA-------KEHGLIFMEASAKTAQ----------NVEEAFIKTAATIYK  123 (165)
Q Consensus        83 ~-~~~~~~~~~-------~~~~~~~~~vSa~~~~----------~i~~l~~~l~~~i~~  123 (165)
                      . -.++...+.       .++++|++..|+..|.          ++.-+|+.|++++-.
T Consensus       138 ~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         138 DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            1 112223222       2457899999987654          466666666665543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.63  E-value=6e-07  Score=69.41  Aligned_cols=117  Identities=16%  Similarity=0.092  Sum_probs=78.2

Q ss_pred             EEEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhcC--CCCeEEEEeeCCCC
Q 031132           10 KLQIWDTAGQESF-------RSITRSYYRGAAGALLVYDITRRET---FNHLASWLEDARQHAN--ANMTIMLIGNKCDL   77 (165)
Q Consensus        10 ~~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~~~~s---~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl   77 (165)
                      .|.+=|+||.-+-       ..-....++++.++++|+|++..+.   .+....+..++..+..  .++|.+||+||+|+
T Consensus       208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~  287 (369)
T COG0536         208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL  287 (369)
T ss_pred             cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence            4888999987432       2222334678999999999986442   4555555566655543  67899999999997


Q ss_pred             CCCCCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           78 AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ....+.-......+....+.. .+.+||.+++|++++...+.+.+.+...
T Consensus       288 ~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         288 PLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETKA  337 (369)
T ss_pred             CcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhhh
Confidence            432222222223333344444 2229999999999999999998888763

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.62  E-value=1.5e-07  Score=64.77  Aligned_cols=76  Identities=16%  Similarity=0.231  Sum_probs=51.4

Q ss_pred             hhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132           28 SYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        28 ~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      ..++.+|++++|+|++++.+..  .+..++...    ..++|+++++||+|+..+..  ...........+..++++||.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            3578999999999998875433  343444322    13689999999999853221  223334455567789999999


Q ss_pred             CCCC
Q 031132          106 TAQN  109 (165)
Q Consensus       106 ~~~~  109 (165)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.60  E-value=8.1e-07  Score=64.55  Aligned_cols=108  Identities=10%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             EEEEEeCCCchhhhh-----hhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC-
Q 031132           10 KLQIWDTAGQESFRS-----ITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA-   82 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~-----~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-   82 (165)
                      .+.+|||+|......     +....+..+|++++|.+..    +... ..++..+...   +.|+++|+||+|+..... 
T Consensus        53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~  125 (197)
T cd04104          53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQ  125 (197)
T ss_pred             CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhh
Confidence            589999999754222     2223367889999985432    2222 2233444333   579999999999832111 


Q ss_pred             ---C---CHHH----HHHHHH----HcC--C-eEEEecCC--CCCCHHHHHHHHHHHHHHH
Q 031132           83 ---V---STEE----GEQFAK----EHG--L-IFMEASAK--TAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        83 ---~---~~~~----~~~~~~----~~~--~-~~~~vSa~--~~~~i~~l~~~l~~~i~~~  124 (165)
                         .   ..++    .+..+.    ..+  . +++-+|+.  .+.++..+.+.++..+-+.
T Consensus       126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence               0   1111    111111    212  3 38888988  5789999888888877653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01856 YlqF YlqF

Probab=98.57  E-value=2.6e-07  Score=65.64  Aligned_cols=91  Identities=14%  Similarity=0.094  Sum_probs=60.0

Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 031132           24 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS  103 (165)
Q Consensus        24 ~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  103 (165)
                      ......+++||.+++|+|++++...... .+..    .. .+.|+++|+||+|+.....  ......+....+..++.+|
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~iS   82 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----IL-GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFVN   82 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hh-cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence            3445668899999999999875432111 1111    11 3578999999999853211  1111122233355689999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 031132          104 AKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus       104 a~~~~~i~~l~~~l~~~i~  122 (165)
                      |+++.|++++...+...+.
T Consensus        83 a~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          83 AKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999999888753

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.56  E-value=6e-07  Score=74.82  Aligned_cols=105  Identities=21%  Similarity=0.175  Sum_probs=71.5

Q ss_pred             EEEEEEeCCCchh------hhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQES------FRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~------~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      -++++.|.||-=.      -+...+.|+  .++|++|-|+|+++-+   ....   ...+....+.|++++.|+.|.-++
T Consensus        50 ~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---RnLy---ltlQLlE~g~p~ilaLNm~D~A~~  123 (653)
T COG0370          50 HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---RNLY---LTLQLLELGIPMILALNMIDEAKK  123 (653)
T ss_pred             ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---HHHH---HHHHHHHcCCCeEEEeccHhhHHh
Confidence            3488999998521      223334443  3579999999999842   1111   111122247899999999997443


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ..+ .-+...+.+.+|+|++++||++|.|+++++..+.+.
T Consensus       124 ~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~  162 (653)
T COG0370         124 RGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIEL  162 (653)
T ss_pred             cCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence            322 334556677789999999999999999988887753

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.55  E-value=5.3e-07  Score=72.79  Aligned_cols=129  Identities=14%  Similarity=0.170  Sum_probs=92.9

Q ss_pred             eeCCEEEEEEEEeCCCchhh----hhhhHh-----hhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQESF----RSITRS-----YYRGAAGALLVYDITR--RETFNHLASWLEDARQHANANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~----~~~~~~-----~~~~ad~vi~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv   71 (165)
                      +++.+-..+++.||||..+.    +..++.     ...=..+|+|+.|++.  ..|..+...++..+.-.+ .+.|+|+|
T Consensus       209 H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~Ilv  287 (620)
T KOG1490|consen  209 HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILV  287 (620)
T ss_pred             hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEE
Confidence            45677788999999997431    111111     1223467889999886  457777777787776665 68999999


Q ss_pred             eeCCCCCCCCCCCHHHH---HHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccC
Q 031132           72 GNKCDLAHRRAVSTEEG---EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDV  132 (165)
Q Consensus        72 ~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~  132 (165)
                      +||+|+.....++.+..   +.+....+++++++|..+.+|+.++-...++.++..+-++.+..
T Consensus       288 lNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks  351 (620)
T KOG1490|consen  288 LNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKS  351 (620)
T ss_pred             eecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence            99999876666655442   23344456899999999999999999999998888766655443

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=4.7e-07  Score=71.53  Aligned_cols=109  Identities=19%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+.-..+.|.+.|+||+.+|-.-.-.-...||+.|+|+|+++.+   +|.   ..+. ...+.+.. .-..++|+.||+|
T Consensus        79 ~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tl-Gi~~lIVavNKMD  156 (428)
T COG5256          79 KFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTL-GIKQLIVAVNKMD  156 (428)
T ss_pred             EeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhc-CCceEEEEEEccc
Confidence            45556678999999999888776666678899999999998863   111   1222 22222222 2346888999999


Q ss_pred             CCCCCCCCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 031132           77 LAHRRAVST----EEGEQFAKEHG-----LIFMEASAKTAQNVEEA  113 (165)
Q Consensus        77 l~~~~~~~~----~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l  113 (165)
                      +.+=++...    .++..+.+..|     ++++++|+..|+|+.+.
T Consensus       157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            865211111    12223343433     45999999999998764

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.54  E-value=1.4e-06  Score=62.76  Aligned_cols=105  Identities=15%  Similarity=0.209  Sum_probs=70.7

Q ss_pred             EEEEeCCCc----------hhhhhhhHhhhcC---CcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132           11 LQIWDTAGQ----------ESFRSITRSYYRG---AAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus        11 ~~l~Dt~G~----------~~~~~~~~~~~~~---ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      +.|.|.||-          +.+..+...|++.   -.++++++|+.......  ++..|+..      .++|++|++||+
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~  145 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKA  145 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEcc
Confidence            778999983          5567777777765   47899999998865432  33333333      579999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHc----CCe--EEEecCCCCCCHHHHHHHHHHHHH
Q 031132           76 DLAHRRAVSTEEGEQFAKEH----GLI--FMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        76 Dl~~~~~~~~~~~~~~~~~~----~~~--~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      |......... .....+...    ...  ++..|+.++.|++++...|.+.+.
T Consensus       146 DKi~~~~~~k-~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         146 DKLKKSERNK-QLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             ccCChhHHHH-HHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            9865432221 112222222    222  778899999999999888877654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.53  E-value=8e-07  Score=68.33  Aligned_cols=90  Identities=19%  Similarity=0.208  Sum_probs=60.0

Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132           26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      ....++.+|++++|+|+.++.+...  .++..+.    .+.|+++|+||+|+.....  ......+....+.+++.+||.
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~   89 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAK   89 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence            4556889999999999987643321  1111111    2579999999999843210  112222233446778999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 031132          106 TAQNVEEAFIKTAATIYK  123 (165)
Q Consensus       106 ~~~~i~~l~~~l~~~i~~  123 (165)
                      ++.|++++++.+...+-.
T Consensus        90 ~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         90 KGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             CcccHHHHHHHHHHHHHH
Confidence            999999999988777644

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=3.8e-06  Score=61.05  Aligned_cols=68  Identities=21%  Similarity=0.314  Sum_probs=52.2

Q ss_pred             EEEEeCCCchhhhhhhHhhhc---CCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCC
Q 031132           11 LQIWDTAGQESFRSITRSYYR---GAAGALLVYDITR-RETFNHLASWLEDARQHA---NANMTIMLIGNKCDLA   78 (165)
Q Consensus        11 ~~l~Dt~G~~~~~~~~~~~~~---~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~   78 (165)
                      +++.|.||+.+.+.....+++   .+-++|||+|+.- .....+...++-.+....   ...+|++++-||.|+.
T Consensus        84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen   84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            689999999999998888888   7999999999764 334555555544443333   3578999999999984

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.52  E-value=9.2e-07  Score=68.71  Aligned_cols=102  Identities=23%  Similarity=0.174  Sum_probs=69.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--   85 (165)
                      +-.|.+-||||++.|......=...||+.|+++|+...- ++..+. ...+.... .=..++++.||+||.+-++...  
T Consensus        85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrR-Hs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F~~  161 (431)
T COG2895          85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRR-HSFIASLL-GIRHVVVAVNKMDLVDYSEEVFEA  161 (431)
T ss_pred             cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHH-HHHHHHHh-CCcEEEEEEeeecccccCHHHHHH
Confidence            346889999999999876666678899999999996531 222222 22233332 2246889999999975433222  


Q ss_pred             --HHHHHHHHHcCCe---EEEecCCCCCCHHH
Q 031132           86 --EEGEQFAKEHGLI---FMEASAKTAQNVEE  112 (165)
Q Consensus        86 --~~~~~~~~~~~~~---~~~vSa~~~~~i~~  112 (165)
                        .+...|+.++++.   ++++||+.|+|+-.
T Consensus       162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         162 IVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence              3345577777754   99999999999643

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.51  E-value=1.2e-06  Score=67.36  Aligned_cols=112  Identities=23%  Similarity=0.188  Sum_probs=75.1

Q ss_pred             eCCEEEEEEEEeCCCchhhh-------hhhHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcC--CC--------
Q 031132            4 IDNKPIKLQIWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHAN--AN--------   65 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~vi~v~D~~~~~s-~~~~~~~~~~i~~~~~--~~--------   65 (165)
                      ++++.+.+|+.|+||.-...       ...-...++||.+++|+|+....+ .+.+...+...--..+  ++        
T Consensus       105 l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~  184 (365)
T COG1163         105 LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKE  184 (365)
T ss_pred             EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEec
Confidence            56677889999999864321       223455789999999999986554 3333333322111111  00        


Q ss_pred             -------------------------------------------------------CeEEEEeeCCCCCCCCCCCHHHHHH
Q 031132           66 -------------------------------------------------------MTIMLIGNKCDLAHRRAVSTEEGEQ   90 (165)
Q Consensus        66 -------------------------------------------------------~p~ivv~nK~Dl~~~~~~~~~~~~~   90 (165)
                                                                             +|.+++.||.|+..     .+....
T Consensus       185 ~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~  259 (365)
T COG1163         185 SGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELER  259 (365)
T ss_pred             cCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHH
Confidence                                                                   89999999999854     233333


Q ss_pred             HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           91 FAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        91 ~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +....  .++.+||.++.|++++.+.|.+.+-
T Consensus       260 l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         260 LARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             HHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            33322  7999999999999999999888654

>PRK01889 GTPase RsgA; Reviewed

Probab=98.50  E-value=5.4e-07  Score=71.24  Aligned_cols=83  Identities=12%  Similarity=0.158  Sum_probs=58.7

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEecCCCCC
Q 031132           30 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQ  108 (165)
Q Consensus        30 ~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~  108 (165)
                      ..++|.+++|++++...+...+..++..+...   +++.+||+||+||.+..   ......+.. ..+++++.+|+.++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            57899999999997555555566665555443   67889999999995421   111122211 457889999999999


Q ss_pred             CHHHHHHHHH
Q 031132          109 NVEEAFIKTA  118 (165)
Q Consensus       109 ~i~~l~~~l~  118 (165)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888763

>PRK13796 GTPase YqeH; Provisional

Probab=98.48  E-value=1.8e-06  Score=68.59  Aligned_cols=93  Identities=26%  Similarity=0.333  Sum_probs=60.7

Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH----HHHHHcC
Q 031132           21 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE----QFAKEHG   96 (165)
Q Consensus        21 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~   96 (165)
                      .|.......-...+.+++|+|+.+..     ..|...+.... .+.|+++|+||+||... ....+...    .++...+
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g  130 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG  130 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence            45554444433344999999997743     22334444433 36799999999999542 23333333    2344556


Q ss_pred             C---eEEEecCCCCCCHHHHHHHHHHH
Q 031132           97 L---IFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        97 ~---~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +   .++.+||+++.|++++++.|.+.
T Consensus       131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        131 LRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            5   48999999999999999998653

>TIGR00101 ureG urease accessory protein UreG

Probab=98.46  E-value=1.5e-06  Score=63.35  Aligned_cols=102  Identities=16%  Similarity=0.111  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      .-+.+.++.|..-.....+ .+  +|.+|.|+|+.+..+...  ....    .  -...-++++||+|+........+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~~----q--i~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGGP----G--ITRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhHh----H--hhhccEEEEEhhhccccccccHHHH
Confidence            3456778888432222222 12  688999999987554321  1001    1  1123378899999963212223333


Q ss_pred             HHHHHH--cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           89 EQFAKE--HGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        89 ~~~~~~--~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...+..  .+.+++++||++|+|++++|+++.++.
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            333333  457799999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.45  E-value=3.7e-07  Score=68.33  Aligned_cols=112  Identities=18%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             EEEEEeCCCchhhhhhhHhhh--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132           10 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~--------~~ad~vi~v~D~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      .+.++|||||.+....|...-        ...-++++++|+....+ ...+..++..+......+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            578999999988766655444        56779999999764322 112222222222222247999999999999652


Q ss_pred             CC-------CC------------HHHHHHHHHH---cC-C-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RA-------VS------------TEEGEQFAKE---HG-L-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..       ..            ......++.-   ++ . .++.+|+.+++|+.+++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            10       00            0001111111   22 3 599999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.44  E-value=2.4e-07  Score=68.30  Aligned_cols=125  Identities=15%  Similarity=0.190  Sum_probs=91.0

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcC-CCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv   71 (165)
                      .++-.++.+.+.|++|+...+..|-+++.+...++|++..+..          +..++-..++..+....= .+.+++++
T Consensus       193 pfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlF  272 (359)
T KOG0085|consen  193 PFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF  272 (359)
T ss_pred             CcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEE
Confidence            5677788899999999999999999999999999998876543          333444444444444432 57899999


Q ss_pred             eeCCCCCCCC----------------CCCHHHHHHHHHHc----C------CeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           72 GNKCDLAHRR----------------AVSTEEGEQFAKEH----G------LIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        72 ~nK~Dl~~~~----------------~~~~~~~~~~~~~~----~------~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .||.|+.++.                ..+...++.+..++    +      +..+++.|.+.+||.-+|.++.+.|+...
T Consensus       273 LNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  273 LNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             echhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            9999985431                22333344444432    1      23678899999999999999999999876


Q ss_pred             hc
Q 031132          126 QD  127 (165)
Q Consensus       126 ~~  127 (165)
                      .+
T Consensus       353 Lk  354 (359)
T KOG0085|consen  353 LK  354 (359)
T ss_pred             hH
Confidence            54

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.41  E-value=7.6e-07  Score=76.38  Aligned_cols=71  Identities=21%  Similarity=0.213  Sum_probs=53.3

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +++..+.+.+|||||+.+|.......++.+|++++|+|+......... ..+..+..   .+.|.++++||+|..
T Consensus        81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH---cCCCEEEEEEChhcc
Confidence            677788999999999999888788889999999999999874322221 11222211   357888999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=2.2e-06  Score=72.11  Aligned_cols=112  Identities=21%  Similarity=0.232  Sum_probs=78.2

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC----
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA----   82 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----   82 (165)
                      -+.++||+|++.|..++.....-+|..|+|+|+-+.   .+.+.+    +.++.   .+.|+||++||+|..-.+.    
T Consensus       541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~  613 (1064)
T KOG1144|consen  541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPN  613 (1064)
T ss_pred             eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCC
Confidence            367899999999999999999999999999998764   333333    22322   4789999999999642210    


Q ss_pred             ---------CCHHH-----------HHHHHHHc------------C--CeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           83 ---------VSTEE-----------GEQFAKEH------------G--LIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        83 ---------~~~~~-----------~~~~~~~~------------~--~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                               ....-           +.+|+.+-            +  +.++++||.+|+||-+++-+|++...+..-++
T Consensus       614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                     00000           11122210            0  23788999999999999999999888766544

>cd01850 CDC_Septin CDC/Septin

Probab=98.39  E-value=1.7e-06  Score=66.19  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             eeCCEEEEEEEEeCCCchhh------------------hh--------hhHhhhc--CCcEEEEEEeCCChhhHHHHHHH
Q 031132            3 TIDNKPIKLQIWDTAGQESF------------------RS--------ITRSYYR--GAAGALLVYDITRRETFNHLASW   54 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~------------------~~--------~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~   54 (165)
                      ..+|..+.+.+|||+|....                  ..        .+...+.  .+|+++|+++.+...-...-...
T Consensus        57 ~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~  136 (276)
T cd01850          57 EENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEF  136 (276)
T ss_pred             EECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHH
Confidence            45677889999999994221                  11        1112222  47889999987752211111222


Q ss_pred             HHHHHHhcCCCCeEEEEeeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEecCC
Q 031132           55 LEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        55 ~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      +..+.    ..+|+++|+||+|+.....  .....++..+..++++++.....
T Consensus       137 lk~l~----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         137 MKRLS----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHh----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            23332    2589999999999854222  22344556677788888876653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=3.7e-06  Score=64.75  Aligned_cols=115  Identities=20%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CHHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEE   87 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~   87 (165)
                      .+.|.|.+|++-.-+....=..--|+.++|++++.+----...+.+..+.-.  .-..++++-||.||......  +-++
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHH
Confidence            5789999999864332222223349999999998653333344444444333  23578999999999543211  2223


Q ss_pred             HHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           88 GEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        88 ~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      +++|.+-.   +.|++++||..+.||+.+++.|.+.|-....
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence            44444322   5689999999999999999988887765433

>PRK00007 elongation factor G; Reviewed

Probab=98.33  E-value=6e-06  Score=70.67  Aligned_cols=72  Identities=21%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +..+...+.|.||||..+|.......+..+|++++|+|+......... ..+..+..   .+.|.++++||+|+..
T Consensus        70 ~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         70 CFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             EEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            334456789999999988766666678899999999998876433322 22232322   3689999999999864

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.31  E-value=6.5e-06  Score=64.40  Aligned_cols=114  Identities=12%  Similarity=0.077  Sum_probs=70.8

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--C
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--S   84 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~   84 (165)
                      ..+.+.|.||+|.......   ....||.+++|.++.....+..+.   ..+.     ...-++|+||+|+.+....  .
T Consensus       147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~  215 (332)
T PRK09435        147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRA  215 (332)
T ss_pred             cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHH
Confidence            3567899999997632222   466799999998755443333222   2122     2234789999998643211  1


Q ss_pred             HHHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132           85 TEEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD  131 (165)
Q Consensus        85 ~~~~~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~  131 (165)
                      ..+.......       +..+++.+||.++.|++++++.|.+.+-.....+.+.
T Consensus       216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~  269 (332)
T PRK09435        216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFA  269 (332)
T ss_pred             HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHH
Confidence            1122222211       1246999999999999999999999876555444443

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.9e-06  Score=69.43  Aligned_cols=123  Identities=20%  Similarity=0.199  Sum_probs=76.6

Q ss_pred             eCCEEEEEEEEeCCCchh-hhh--------hhHhhhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHHhcC------CCC
Q 031132            4 IDNKPIKLQIWDTAGQES-FRS--------ITRSYYRGAAGALLVYDI--TRRETFNHLASWLEDARQHAN------ANM   66 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~-~~~--------~~~~~~~~ad~vi~v~D~--~~~~s~~~~~~~~~~i~~~~~------~~~   66 (165)
                      |+-.++++.+.||+|..+ -..        ..+..+..||++++|+|+  ++-.+...+...+.....-..      ...
T Consensus       311 v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~  390 (531)
T KOG1191|consen  311 VTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQ  390 (531)
T ss_pred             eecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEecccccc
Confidence            444556689999999865 111        123447789999999999  443333444444443322221      237


Q ss_pred             eEEEEeeCCCCCCC-CCCCHHHHHHHHHHc---CCe-EEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           67 TIMLIGNKCDLAHR-RAVSTEEGEQFAKEH---GLI-FMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        67 p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~---~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      |++++.||.|+..+ .+... ....+....   .++ +.++|+++++|++.+.+++.+.+...-..
T Consensus       391 ~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~  455 (531)
T KOG1191|consen  391 RIILVANKSDLVSKIPEMTK-IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVS  455 (531)
T ss_pred             ceEEEechhhccCccccccC-CceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence            89999999998644 11211 111111111   244 56699999999999999999887765553

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.28  E-value=1e-05  Score=59.20  Aligned_cols=101  Identities=17%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      +.+.|.+|.|.-....   .+.-..+..+.|+|..+.....  .   ... ..  ...|.++++||+|+.+.........
T Consensus       103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~---~~~-~~--~~~a~iiv~NK~Dl~~~~~~~~~~~  171 (207)
T TIGR00073       103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--L---KYP-GM--FKEADLIVINKADLAEAVGFDVEKM  171 (207)
T ss_pred             CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--h---hhH-hH--HhhCCEEEEEHHHccccchhhHHHH
Confidence            3567888888311111   1112345566788887543211  1   111 11  2467899999999964322223333


Q ss_pred             HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           89 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        89 ~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .......  ..+++++||+++.|++++|+++.+.
T Consensus       172 ~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       172 KADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3333333  3789999999999999999999774

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.27  E-value=1e-05  Score=69.65  Aligned_cols=70  Identities=23%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +++.+.+.|+||||..+|.......++.+|++++|+|+....... ....+..+..   .+.|.++++||+|+.
T Consensus        83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhh
Confidence            445778999999999998887888889999999999988753322 2222222222   246789999999974

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.26  E-value=6.8e-06  Score=62.96  Aligned_cols=94  Identities=20%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132           22 FRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM  100 (165)
Q Consensus        22 ~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  100 (165)
                      ...+.+.-+.+.|-+++|+.+.+++ +...+..++..+...   ++..+|++||+||.++......+........+++++
T Consensus        69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~  145 (301)
T COG1162          69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL  145 (301)
T ss_pred             cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence            3444455566778888888877764 666777766655544   677788899999965433322345556777899999


Q ss_pred             EecCCCCCCHHHHHHHHH
Q 031132          101 EASAKTAQNVEEAFIKTA  118 (165)
Q Consensus       101 ~vSa~~~~~i~~l~~~l~  118 (165)
                      .+|++++++++++.+.+.
T Consensus       146 ~~s~~~~~~~~~l~~~l~  163 (301)
T COG1162         146 FVSAKNGDGLEELAELLA  163 (301)
T ss_pred             EecCcCcccHHHHHHHhc
Confidence            999999999999888764

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=5.3e-06  Score=66.18  Aligned_cols=92  Identities=20%  Similarity=0.213  Sum_probs=65.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      |.+++....+++.||||+++|..-+-..+-.+|..+.|+|+...-.-. ...    +-..|. .+.|++-++||.|....
T Consensus        74 MqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~K----LfeVcrlR~iPI~TFiNKlDR~~r  148 (528)
T COG4108          74 MQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLK----LFEVCRLRDIPIFTFINKLDREGR  148 (528)
T ss_pred             EEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHH-HHH----HHHHHhhcCCceEEEeeccccccC
Confidence            678999999999999999998877666778899999999997642222 212    222232 58999999999998543


Q ss_pred             CCCCHHHHHHHHHHcCCeEE
Q 031132           81 RAVSTEEGEQFAKEHGLIFM  100 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~  100 (165)
                      .  +.+...+....+++.++
T Consensus       149 d--P~ELLdEiE~~L~i~~~  166 (528)
T COG4108         149 D--PLELLDEIEEELGIQCA  166 (528)
T ss_pred             C--hHHHHHHHHHHhCccee
Confidence            3  44445555555555433

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.18  E-value=1.4e-05  Score=53.44  Aligned_cols=98  Identities=20%  Similarity=0.133  Sum_probs=68.3

Q ss_pred             EEeCCCc----hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132           13 IWDTAGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus        13 l~Dt~G~----~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      ..||+|.    ..+.+........+|++++|-.++++.+.-.     ..+...  ...|+|-+.+|.||.+.  ......
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed--~dI~~~  111 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAED--ADISLV  111 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccch--HhHHHH
Confidence            4788885    3344444556789999999999998744211     112222  34678999999999642  334555


Q ss_pred             HHHHHHcCCe-EEEecCCCCCCHHHHHHHHHH
Q 031132           89 EQFAKEHGLI-FMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        89 ~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ..+..+.|.. ++++|+.++.|++++++.|..
T Consensus       112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            6666667754 999999999999999987754

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.15  E-value=3.3e-05  Score=61.96  Aligned_cols=51  Identities=22%  Similarity=0.245  Sum_probs=33.0

Q ss_pred             CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH-HHHHHHH
Q 031132           65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE-AFIKTAA  119 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~-l~~~l~~  119 (165)
                      .+|+++|+||.|+....    .....+....+..++.+||..+.++.+ +.+.+.+
T Consensus       217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~  268 (396)
T PRK09602        217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLID  268 (396)
T ss_pred             CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence            38999999999974211    112222222344599999999999888 4444444

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.13  E-value=1.8e-05  Score=65.10  Aligned_cols=115  Identities=21%  Similarity=0.231  Sum_probs=79.3

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      |+.-.+.+-|.+-. ....+.+.. ..+|++.++||.+++.+|......+......  ...|+++|++|.|+.+..+...
T Consensus       471 g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~  546 (625)
T KOG1707|consen  471 GQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYS  546 (625)
T ss_pred             cccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccC
Confidence            34444555555443 233333333 6899999999999999999888877655444  5799999999999965443333


Q ss_pred             HHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           86 EEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        86 ~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .+...++.+++++ .+.+|..+.-. .++|..|........
T Consensus       547 iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  547 IQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence            3336788888887 66677664333 788988888776655

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=4e-05  Score=61.20  Aligned_cols=110  Identities=17%  Similarity=0.076  Sum_probs=73.6

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      ..+.|.|++|.+++-.-.-.-+...|..++|+|+++..... ..+.+. +.... .-...++|+||+|+.++.. .....
T Consensus        50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~q-tgEhL~-iLdll-gi~~giivltk~D~~d~~r-~e~~i  125 (447)
T COG3276          50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQ-TGEHLL-ILDLL-GIKNGIIVLTKADRVDEAR-IEQKI  125 (447)
T ss_pred             CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchh-hHHHHH-HHHhc-CCCceEEEEeccccccHHH-HHHHH
Confidence            36889999999988665555567899999999997643221 222222 22222 2234588999999864331 12223


Q ss_pred             HHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           89 EQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        89 ~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .+....+   ..+++.+|+++|+||+++-+.|.....
T Consensus       126 ~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         126 KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             HHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            3333333   355899999999999999999998884

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.12  E-value=8.5e-05  Score=56.29  Aligned_cols=114  Identities=18%  Similarity=0.175  Sum_probs=67.2

Q ss_pred             EEEEEEEeCCCchh-h-----hhhhHhhhc--CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            8 PIKLQIWDTAGQES-F-----RSITRSYYR--GAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~-~-----~~~~~~~~~--~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+.+.+.|||||.+ |     ..++..-+.  ...++++|+|...   +.+|-..-.+--.+.-.  ...|++++.||+|
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~D  192 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTD  192 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEeccc
Confidence            35578999999853 1     222222222  4578888888543   33343322222233322  5799999999999


Q ss_pred             CCCCCC-----CCHHHHHHHHH--------------------H-cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           77 LAHRRA-----VSTEEGEQFAK--------------------E-HGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        77 l~~~~~-----~~~~~~~~~~~--------------------~-~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +.+..-     .+.+..+....                    - .++..+-+||.+|.|.+++|.++-..+-+
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            854210     00111111111                    0 14678899999999999999998776654

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.05  E-value=7e-05  Score=56.64  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=74.7

Q ss_pred             eCCEEEEEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            4 IDNKPIKLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      ++++  .+.+||+||..+       |+.....++...|.++++.++.|+.---+.. ++..+.... ...+++++.|.+|
T Consensus        84 ~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~-~~~~~i~~VtQ~D  159 (296)
T COG3596          84 YDGE--NLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDED-FLRDVIILG-LDKRVLFVVTQAD  159 (296)
T ss_pred             cccc--ceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHH-HHHHHHHhc-cCceeEEEEehhh
Confidence            4453  378999999754       7788888999999999999998864211121 222232222 3489999999999


Q ss_pred             CCCCC-------CCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           77 LAHRR-------AVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        77 l~~~~-------~~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ...+.       ..+....+++...          .-.|++.++...+.|++.+...++..+-
T Consensus       160 ~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         160 RAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             hhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            74321       1111122221111          1235888888999999999999887664

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.03  E-value=1.7e-05  Score=61.31  Aligned_cols=105  Identities=13%  Similarity=0.024  Sum_probs=65.0

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH-
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST-   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~-   85 (165)
                      ..+.+.|.||+|.-..   ....+..+|.++++.+...   .+++......+     .++|.++++||+|+........ 
T Consensus       125 ~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       125 AGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHH
Confidence            3566889999985421   1235667899988865443   33443333332     2467899999999864321110 


Q ss_pred             -HHH----HHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           86 -EEG----EQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        86 -~~~----~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                       ...    ..+...   +..+++++||.++.|++++++++.+..-
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence             000    111111   1235899999999999999999998744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.01  E-value=2.5e-05  Score=45.03  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             CCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132           32 GAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus        32 ~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      =+++++|++|++..  .+.++-..++..+.... .+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            46899999999863  46777777888888776 5899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.01  E-value=2.5e-05  Score=57.63  Aligned_cols=70  Identities=26%  Similarity=0.467  Sum_probs=49.1

Q ss_pred             EEEEEEeCCCchhh-----hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhcCCCCeEEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQESF-----RSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~-----~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~---~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +.+.+||.+|++.+     .......+++.+++++|||++..+-..++..+-.   .+.+.. +...+++...|.||..
T Consensus        53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcc
Confidence            46789999999853     2234567899999999999987654444433333   333332 5667888999999964

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.98  E-value=2.4e-05  Score=68.33  Aligned_cols=68  Identities=24%  Similarity=0.244  Sum_probs=51.8

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ..+.+.++||||+.+|......-++.+|++|+|+|+...-..... ..+..+..   .++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence            367789999999999988777788999999999999876433322 22232322   468999999999975

>PTZ00416 elongation factor 2; Provisional

Probab=97.98  E-value=2.2e-05  Score=68.49  Aligned_cols=67  Identities=28%  Similarity=0.349  Sum_probs=51.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ...+.|.||||..+|.......++.+|++|+|+|+........ ...+..+..   .+.|+++++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence            5678999999999987777778899999999999987543332 222333322   368999999999984

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=2.5e-05  Score=64.16  Aligned_cols=110  Identities=21%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      ..|+-....+.+.|+||+..|..-.-.-...||+.++|+|++-..   +|+   .++. ...+.+.. .-..++|++||+
T Consensus       248 ~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L-gi~qlivaiNKm  325 (603)
T KOG0458|consen  248 TWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL-GISQLIVAINKM  325 (603)
T ss_pred             EEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc-CcceEEEEeecc
Confidence            345666778999999998888776555677899999999997632   222   1222 22233333 234688999999


Q ss_pred             CCCCCCCCCHHH----HHHHH-HHcC-----CeEEEecCCCCCCHHHH
Q 031132           76 DLAHRRAVSTEE----GEQFA-KEHG-----LIFMEASAKTAQNVEEA  113 (165)
Q Consensus        76 Dl~~~~~~~~~~----~~~~~-~~~~-----~~~~~vSa~~~~~i~~l  113 (165)
                      |+.+=.+...++    +..+. +..|     +.+++||+..|+|+-..
T Consensus       326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            986422222222    33344 3333     46999999999996543

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.96  E-value=0.00021  Score=51.69  Aligned_cols=113  Identities=17%  Similarity=0.135  Sum_probs=64.4

Q ss_pred             EEEEEEeCCCchhhh--------hh---hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031132            9 IKLQIWDTAGQESFR--------SI---TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKC   75 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~--------~~---~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~   75 (165)
                      ..+.++||||.....        .+   +.....++|+++||+++.+ .+- .....+..+...+.  .-.++++++|+.
T Consensus        49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~  126 (196)
T cd01852          49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRG  126 (196)
T ss_pred             eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence            468999999964321        11   1222467899999999887 222 22333444444432  125788999999


Q ss_pred             CCCCCCCC------CHHHHHHHHHHcCCeEEEec-----CCCCCCHHHHHHHHHHHHHH
Q 031132           76 DLAHRRAV------STEEGEQFAKEHGLIFMEAS-----AKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        76 Dl~~~~~~------~~~~~~~~~~~~~~~~~~vS-----a~~~~~i~~l~~~l~~~i~~  123 (165)
                      |......+      .....+.+....+-.++..+     +..+.+++++++.+.+.+..
T Consensus       127 d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         127 DDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             cccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            96443221      11334455555565665554     34455666666665554443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01882 BMS1 Bms1

Probab=97.94  E-value=0.00024  Score=52.75  Aligned_cols=96  Identities=15%  Similarity=0.119  Sum_probs=55.5

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCCC-CC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAHRRA-VS   84 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~-~~   84 (165)
                      ....+.++||+|..  ..+. ...+.+|++++|+|++....... ..++..+..   .+.|. ++|+||+|+.+... ..
T Consensus        81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~  153 (225)
T cd01882          81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLR  153 (225)
T ss_pred             CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHH
Confidence            44567899999864  2333 34688999999999986433222 222332322   35675 45999999853221 11


Q ss_pred             --HHHHHH-HHHH--cCCeEEEecCCCCCC
Q 031132           85 --TEEGEQ-FAKE--HGLIFMEASAKTAQN  109 (165)
Q Consensus        85 --~~~~~~-~~~~--~~~~~~~vSa~~~~~  109 (165)
                        ...++. +...  .+.+++.+||++.-.
T Consensus       154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence              111111 2211  245699999997643

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.94  E-value=0.00019  Score=47.40  Aligned_cols=63  Identities=22%  Similarity=0.272  Sum_probs=40.6

Q ss_pred             eCCEEEEEEEEeCCCchh----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132            4 IDNKPIKLQIWDTAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN   73 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n   73 (165)
                      +++..  +.++||||...          +....+. +..+|++++|+|+++... +....++..+.    .+.|+++|+|
T Consensus        44 ~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~N  115 (116)
T PF01926_consen   44 YNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLN  115 (116)
T ss_dssp             ETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEE
T ss_pred             eceee--EEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEc
Confidence            34444  46999999742          1123333 489999999999877321 22333344442    4689999999


Q ss_pred             C
Q 031132           74 K   74 (165)
Q Consensus        74 K   74 (165)
                      |
T Consensus       116 K  116 (116)
T PF01926_consen  116 K  116 (116)
T ss_dssp             S
T ss_pred             C
Confidence            8

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.92  E-value=7.4e-05  Score=61.30  Aligned_cols=124  Identities=16%  Similarity=0.338  Sum_probs=93.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~-   79 (165)
                      +.++++...+.+.|.+|...     .+|-..+|++||||...+..++..+..+...+..+.+ ..+|+++++++.-... 
T Consensus        70 ~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~  144 (749)
T KOG0705|consen   70 VVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAK  144 (749)
T ss_pred             EEeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcc
Confidence            56788888888899888443     6677889999999999999999988887777765554 5678888888765432 


Q ss_pred             -CCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132           80 -RRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF  130 (165)
Q Consensus        80 -~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~  130 (165)
                       .+.+.+.....+.. ...+.+++++|.+|.++...|..+...++..+..++.
T Consensus       145 ~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~qq~  197 (749)
T KOG0705|consen  145 RPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQQL  197 (749)
T ss_pred             cccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhhhhc
Confidence             23344555554444 4467799999999999999999999988776554443

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.90  E-value=0.00029  Score=54.66  Aligned_cols=115  Identities=14%  Similarity=0.313  Sum_probs=81.3

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCC----cEEEEEEeCCCh-hhHHHHHHHHHHHHHhcC---C----------------
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGA----AGALLVYDITRR-ETFNHLASWLEDARQHAN---A----------------   64 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~a----d~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~---~----------------   64 (165)
                      .++.+|-.-|...+..+....+...    ..+|++.|++++ .-++.+..|..-+..+..   .                
T Consensus       100 tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~w  179 (473)
T KOG3905|consen  100 TRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDW  179 (473)
T ss_pred             hhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            3566787778776666665554432    578889999998 556667666665543322   0                


Q ss_pred             ------------------------------------------CCeEEEEeeCCCC----CCCCCCCH-------HHHHHH
Q 031132           65 ------------------------------------------NMTIMLIGNKCDL----AHRRAVST-------EEGEQF   91 (165)
Q Consensus        65 ------------------------------------------~~p~ivv~nK~Dl----~~~~~~~~-------~~~~~~   91 (165)
                                                                ++|++||.||+|.    ..+.+..+       ..++.|
T Consensus       180 QeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkF  259 (473)
T KOG3905|consen  180 QEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKF  259 (473)
T ss_pred             HHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHH
Confidence                                                      0899999999997    23332222       335678


Q ss_pred             HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           92 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        92 ~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +..+|...+.+|++...|++-+...|++.+..
T Consensus       260 CLr~GaaLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  260 CLRYGAALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             HHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence            88999999999999999999998888887653

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00012  Score=57.17  Aligned_cols=115  Identities=14%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC-C
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-V   83 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~   83 (165)
                      .++..++.+.|.||+...-...-.-..-.|..++|+|+...-.-..+..++.. ...   -...+||+||+|+..+.+ .
T Consensus        66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig-~~~---c~klvvvinkid~lpE~qr~  141 (522)
T KOG0461|consen   66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIG-ELL---CKKLVVVINKIDVLPENQRA  141 (522)
T ss_pred             ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhh-hhh---ccceEEEEeccccccchhhh
Confidence            46678899999999875333222222334888999998764333322222211 111   234677788888643321 1


Q ss_pred             C--HHHHHHHHH---Hc----CCeEEEecCCCC----CCHHHHHHHHHHHHHH
Q 031132           84 S--TEEGEQFAK---EH----GLIFMEASAKTA----QNVEEAFIKTAATIYK  123 (165)
Q Consensus        84 ~--~~~~~~~~~---~~----~~~~~~vSa~~~----~~i~~l~~~l~~~i~~  123 (165)
                      +  ......+.+   ..    +.|++++||..|    +++.++.+.|..++..
T Consensus       142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            1  111222222   12    267999999999    5666666666665554

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.00014  Score=62.16  Aligned_cols=71  Identities=23%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             eCCE-EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            4 IDNK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         4 i~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +..+ .+.+++.||||+-+|......-++-.|+.++|+|+...-....-.-|.+ +.+   .++|.++++||+|..
T Consensus        70 ~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~~---~~vp~i~fiNKmDR~  141 (697)
T COG0480          70 LFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-ADK---YGVPRILFVNKMDRL  141 (697)
T ss_pred             EEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hhh---cCCCeEEEEECcccc
Confidence            3344 4889999999999999988888999999999999987543332222222 222   579999999999974

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.82  E-value=0.00012  Score=48.31  Aligned_cols=77  Identities=27%  Similarity=0.375  Sum_probs=55.0

Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecC
Q 031132           25 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  104 (165)
Q Consensus        25 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  104 (165)
                      +...+++.+++++++|+.++..+++.+  |...+........|.++++||.|+.....+.....        ..++++|+
T Consensus        39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~  108 (124)
T smart00010       39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSA  108 (124)
T ss_pred             ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhC
Confidence            345667889999999999999888765  76666544445678999999999844333333222        24556889


Q ss_pred             CCCCCHH
Q 031132          105 KTAQNVE  111 (165)
Q Consensus       105 ~~~~~i~  111 (165)
                      +++.|+.
T Consensus       109 ~~~~~~~  115 (124)
T smart00010      109 KTPEEGE  115 (124)
T ss_pred             CCcchhh
Confidence            9999874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=4.7e-05  Score=63.70  Aligned_cols=70  Identities=24%  Similarity=0.306  Sum_probs=55.3

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .+++.+.+++.||+|+-.|......-++-+|++++|+|+...-.++.-+.+...+.    ...|+++++||.|+
T Consensus       192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence            36778889999999999998888888999999999999988766553332222222    35899999999995

>smart00053 DYNc Dynamin, GTPase

Probab=97.60  E-value=0.00041  Score=52.00  Aligned_cols=69  Identities=12%  Similarity=0.128  Sum_probs=44.9

Q ss_pred             EEEEEEeCCCchh-------------hhhhhHhhhc-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            9 IKLQIWDTAGQES-------------FRSITRSYYR-GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         9 ~~~~l~Dt~G~~~-------------~~~~~~~~~~-~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      ..+.+.||||...             ...+...|++ ..+++++|+|++....-.+...+...+..   .+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence            3678999999742             2345667777 45699999998764322222222222222   46899999999


Q ss_pred             CCCCCC
Q 031132           75 CDLAHR   80 (165)
Q Consensus        75 ~Dl~~~   80 (165)
                      .|...+
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.56  E-value=0.00023  Score=49.90  Aligned_cols=63  Identities=22%  Similarity=0.245  Sum_probs=44.8

Q ss_pred             EEEEEeCCCchh----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132           10 KLQIWDTAGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus        10 ~~~l~Dt~G~~~----~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      .+.|+||||...    ...++..++..+|++|+|.++++.-+-.+...+.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            478999999843    3467888999999999999999865545554444444333   34488888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.53  E-value=0.0021  Score=51.05  Aligned_cols=109  Identities=18%  Similarity=0.108  Sum_probs=65.4

Q ss_pred             EEEEEeCCCchhhhh--hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--H
Q 031132           10 KLQIWDTAGQESFRS--ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--T   85 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~--~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~   85 (165)
                      .+.|.||.|++.|-.  +.-.+-...|-.++++.+++..+- ..++.+-.+..   .+.|++++.||+|+..+..+.  .
T Consensus       202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~  277 (527)
T COG5258         202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVV  277 (527)
T ss_pred             EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHH
Confidence            478999999998733  333445578999999999886432 22232322222   378999999999985431100  0


Q ss_pred             HHHH----------------------HHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           86 EEGE----------------------QFAKEHG---LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        86 ~~~~----------------------~~~~~~~---~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +++.                      ..+-+.+   .|++.+|+.+|+|++-+.+ +...+-+
T Consensus       278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp~  339 (527)
T COG5258         278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLPK  339 (527)
T ss_pred             HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCCc
Confidence            1111                      1111122   4799999999999764443 3333333

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.0013  Score=49.23  Aligned_cols=117  Identities=20%  Similarity=0.256  Sum_probs=71.4

Q ss_pred             EEEEEEEEeCCCchhhhh---hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC-CC
Q 031132            7 KPIKLQIWDTAGQESFRS---ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA-HR   80 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~---~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~-~~   80 (165)
                      --+.+++||.|||-.+-.   -.+..++.+-++|||+|+-+.. .+.+..+...+.+.-.  +++-+=|++.|.|-. ++
T Consensus        73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen   73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence            346789999999965422   2466789999999999986542 3333333333333322  567778889999953 22


Q ss_pred             CCC-CHHHHHH----HHHHc---CC--eEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 RAV-STEEGEQ----FAKEH---GL--IFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~-~~~~~~~----~~~~~---~~--~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ..+ +...+.+    -....   ++  .++.+|-. ..+|-+.|..+++.++.++
T Consensus       152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLipqL  205 (347)
T KOG3887|consen  152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLIPQL  205 (347)
T ss_pred             hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHhhhc
Confidence            111 1111111    11112   23  36667766 4689999999999887754

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00014  Score=55.99  Aligned_cols=111  Identities=16%  Similarity=0.133  Sum_probs=67.6

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEE   87 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~   87 (165)
                      .+.|.|.+|++-.-+....-..-.|+.++++..+..---....+.+..+.-.  .-..++++-||.||..+.+..  -++
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli~e~~A~eq~e~  203 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLIKESQALEQHEQ  203 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhhhHHHHHHHHHH
Confidence            3578999999864332221122348888888766421111122222333222  125789999999997544321  123


Q ss_pred             HHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           88 GEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        88 ~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ++.|....   +.|++++||.-++||+.+.+.|+..|-
T Consensus       204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            34444432   578999999999999999888887664

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.42  E-value=0.0038  Score=51.23  Aligned_cols=116  Identities=17%  Similarity=0.323  Sum_probs=77.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcC----CcEEEEEEeCCChhh-HHHHHHHHHHHHHhcC-------------------
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRG----AAGALLVYDITRRET-FNHLASWLEDARQHAN-------------------   63 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~----ad~vi~v~D~~~~~s-~~~~~~~~~~i~~~~~-------------------   63 (165)
                      ..++.+|-..|...+..+....+..    --.|++|+|.+.+-. ++.+..|+..+..+..                   
T Consensus        72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~  151 (472)
T PF05783_consen   72 LARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQ  151 (472)
T ss_pred             CceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3568999998877777777665553    368899999998733 2333333332221110                   


Q ss_pred             -------------------------------------------CCCeEEEEeeCCCCC----CCCCCC-------HHHHH
Q 031132           64 -------------------------------------------ANMTIMLIGNKCDLA----HRRAVS-------TEEGE   89 (165)
Q Consensus        64 -------------------------------------------~~~p~ivv~nK~Dl~----~~~~~~-------~~~~~   89 (165)
                                                                 .++|++||.+|+|..    .+....       ...++
T Consensus       152 ~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR  231 (472)
T PF05783_consen  152 WQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR  231 (472)
T ss_pred             HHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH
Confidence                                                       017999999999962    111111       22356


Q ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           90 QFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        90 ~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .++..+|.-.+.+|++...|++-++..|.+.+..
T Consensus       232 ~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~  265 (472)
T PF05783_consen  232 TFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYG  265 (472)
T ss_pred             HHHHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence            6788899999999999999998888776666543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.00099  Score=51.13  Aligned_cols=92  Identities=17%  Similarity=0.180  Sum_probs=57.4

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC---CCH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA---VST   85 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~   85 (165)
                      .+-..|+||+.+|-...-.-....|+.|+|+.+++.+-- ..+..+- +.++  -++| ++++.||+|+.+..+   +-.
T Consensus        76 hyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmP-qTrEHiL-larq--vGvp~ivvflnK~Dmvdd~ellelVe  151 (394)
T COG0050          76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHIL-LARQ--VGVPYIVVFLNKVDMVDDEELLELVE  151 (394)
T ss_pred             eEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCC-cchhhhh-hhhh--cCCcEEEEEEecccccCcHHHHHHHH
Confidence            345799999998866444445678999999999985421 1111111 1122  4675 566899999975332   223


Q ss_pred             HHHHHHHHHcCCe-----EEEecCC
Q 031132           86 EEGEQFAKEHGLI-----FMEASAK  105 (165)
Q Consensus        86 ~~~~~~~~~~~~~-----~~~vSa~  105 (165)
                      .+++.+...++++     ++.-||+
T Consensus       152 mEvreLLs~y~f~gd~~Pii~gSal  176 (394)
T COG0050         152 MEVRELLSEYGFPGDDTPIIRGSAL  176 (394)
T ss_pred             HHHHHHHHHcCCCCCCcceeechhh
Confidence            3466677777654     6666765

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.32  E-value=0.00059  Score=55.69  Aligned_cols=80  Identities=16%  Similarity=0.210  Sum_probs=53.8

Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCC
Q 031132           20 ESFRSITRSYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL   97 (165)
Q Consensus        20 ~~~~~~~~~~~~~ad~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~   97 (165)
                      +-|+.+|+- ++.+|+||.++|+.++--|  .++..++..+.    ..+-.+|+.||.||....+  ......+....++
T Consensus       163 E~WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni  235 (562)
T KOG1424|consen  163 EIWRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNI  235 (562)
T ss_pred             HHHHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCCHHH--HHHHHHHHHhcCc
Confidence            446777774 7899999999999997543  34444555443    3366888999999954221  1222334555678


Q ss_pred             eEEEecCCC
Q 031132           98 IFMEASAKT  106 (165)
Q Consensus        98 ~~~~vSa~~  106 (165)
                      ++++.||..
T Consensus       236 ~~vf~SA~~  244 (562)
T KOG1424|consen  236 PVVFFSALA  244 (562)
T ss_pred             eEEEEeccc
Confidence            999999876

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.28  E-value=0.0021  Score=49.94  Aligned_cols=72  Identities=11%  Similarity=0.012  Sum_probs=42.1

Q ss_pred             EEEEEEEeCCCchhhhhhhH---hhhc------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCC
Q 031132            8 PIKLQIWDTAGQESFRSITR---SYYR------GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCD   76 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~---~~~~------~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D   76 (165)
                      ...+.+|||||..+......   ..++      +.|+++||..++.....+.-...+..+...+.  .-.+.+|+.|+.|
T Consensus        85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d  164 (313)
T TIGR00991        85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ  164 (313)
T ss_pred             CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence            35789999999865422211   1122      68999999665432211122233444444432  2357899999999


Q ss_pred             CCC
Q 031132           77 LAH   79 (165)
Q Consensus        77 l~~   79 (165)
                      ...
T Consensus       165 ~~~  167 (313)
T TIGR00991       165 FSP  167 (313)
T ss_pred             cCC
Confidence            753

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.22  E-value=0.0043  Score=44.09  Aligned_cols=85  Identities=26%  Similarity=0.298  Sum_probs=58.4

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      ..+.+.++||++....  .....+..+|.+++++.++. .+...+..++..+...   +.|+.+|+||.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            5677899999966432  33445789999999999874 3556666666655443   5678899999996321   234


Q ss_pred             HHHHHHHHcCCeEE
Q 031132           87 EGEQFAKEHGLIFM  100 (165)
Q Consensus        87 ~~~~~~~~~~~~~~  100 (165)
                      +...+.+..+++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            55666777787754

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.21  E-value=0.0047  Score=49.85  Aligned_cols=96  Identities=15%  Similarity=0.193  Sum_probs=57.9

Q ss_pred             CCEEEEEEEEeCCCchhhhh-------h----------------------hHhhhc-CCcEEEEEE-eCCC----hhhHH
Q 031132            5 DNKPIKLQIWDTAGQESFRS-------I----------------------TRSYYR-GAAGALLVY-DITR----RETFN   49 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~-------~----------------------~~~~~~-~ad~vi~v~-D~~~----~~s~~   49 (165)
                      ++-...+.|.||+|...-.+       .                      ++..+. .+|+.|+|. |.+-    +..+.
T Consensus        87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~  166 (492)
T TIGR02836        87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV  166 (492)
T ss_pred             CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence            45567899999998632110       0                      334455 889999998 7741    11122


Q ss_pred             H-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132           50 H-LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        50 ~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      + -..++..+..   .++|+++++||.|-...  .+......+..+++.+++.+|+.
T Consensus       167 ~aEe~~i~eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~  218 (492)
T TIGR02836       167 EAEERVIEELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVE  218 (492)
T ss_pred             HHHHHHHHHHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHH
Confidence            2 2234444443   37999999999993221  13344445556678887777755

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.00041  Score=55.49  Aligned_cols=91  Identities=20%  Similarity=0.262  Sum_probs=65.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +++|++..++.++||+|+-+|+-..+.+++--|+++.|||++..-.-..+--|.+. .   ..++|-..++||+|.....
T Consensus        95 v~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqa-d---k~~ip~~~finkmdk~~an  170 (753)
T KOG0464|consen   95 VNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-D---KFKIPAHCFINKMDKLAAN  170 (753)
T ss_pred             eecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-c---ccCCchhhhhhhhhhhhhh
Confidence            57899999999999999999999889999999999999999875433333333322 1   1468989999999975322


Q ss_pred             CCCHHHHHHHHHHcCCe
Q 031132           82 AVSTEEGEQFAKEHGLI   98 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~   98 (165)
                        -...+...-++++..
T Consensus       171 --fe~avdsi~ekl~ak  185 (753)
T KOG0464|consen  171 --FENAVDSIEEKLGAK  185 (753)
T ss_pred             --hhhHHHHHHHHhCCc
Confidence              122334444556655

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.10  E-value=0.0032  Score=50.26  Aligned_cols=116  Identities=18%  Similarity=0.148  Sum_probs=64.8

Q ss_pred             hhhHhh---hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 031132           24 SITRSY---YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM  100 (165)
Q Consensus        24 ~~~~~~---~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  100 (165)
                      .+|...   +..+|++|-|+|+.|+-..  -...+....+.-.+....|+|+||+||..-. ++..=+..+...+-.--|
T Consensus       202 RIW~ELyKViDSSDVvvqVlDARDPmGT--rc~~ve~ylkke~phKHli~vLNKvDLVPtw-vt~~Wv~~lSkeyPTiAf  278 (572)
T KOG2423|consen  202 RIWGELYKVIDSSDVVVQVLDARDPMGT--RCKHVEEYLKKEKPHKHLIYVLNKVDLVPTW-VTAKWVRHLSKEYPTIAF  278 (572)
T ss_pred             HHHHHHHHhhcccceeEEeeeccCCccc--ccHHHHHHHhhcCCcceeEEEeeccccccHH-HHHHHHHHHhhhCcceee
Confidence            345444   4578999999999997321  1112222222222567899999999995422 112222233333333356


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCC
Q 031132          101 EASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGR  153 (165)
Q Consensus       101 ~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (165)
                      ..|..+..|-.. +-.|++++-+...++          .+.+.|-|+=|-+|+
T Consensus       279 HAsi~nsfGKga-lI~llRQf~kLh~dk----------kqISVGfiGYPNvGK  320 (572)
T KOG2423|consen  279 HASINNSFGKGA-LIQLLRQFAKLHSDK----------KQISVGFIGYPNVGK  320 (572)
T ss_pred             ehhhcCccchhH-HHHHHHHHHhhccCc----------cceeeeeecCCCCch
Confidence            677667777444 445566666555432          234555566665554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.09  E-value=0.0013  Score=50.57  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=38.7

Q ss_pred             CCeEEEEeeCCCCCCCCCCCHHHHHHHHHH--cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKE--HGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ...-++|+||+|+........+........  ...+++.+||++|+|+++++++|..+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            356788999999954211122223333333  25679999999999999999999764

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.96  E-value=0.0019  Score=46.64  Aligned_cols=79  Identities=23%  Similarity=0.151  Sum_probs=50.0

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHH-hcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH--cCCeEEEecCCCCCCH
Q 031132           34 AGALLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE--HGLIFMEASAKTAQNV  110 (165)
Q Consensus        34 d~vi~v~D~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~~~~i  110 (165)
                      +.-|+|+|.+..+..-         ++ ....-..=++|+||.||...-..+.+....-+.+  .+.+++++|+++|+|+
T Consensus       119 ~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~  189 (202)
T COG0378         119 HLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL  189 (202)
T ss_pred             ceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence            3778888887653111         11 1100124578899999954333333433333333  3578999999999999


Q ss_pred             HHHHHHHHHHH
Q 031132          111 EEAFIKTAATI  121 (165)
Q Consensus       111 ~~l~~~l~~~i  121 (165)
                      ++++.++....
T Consensus       190 ~~~~~~i~~~~  200 (202)
T COG0378         190 DEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHhhc
Confidence            99999887653

>KOG2484 consensus GTPase [General function prediction only]

Probab=96.93  E-value=0.0045  Score=49.23  Aligned_cols=55  Identities=20%  Similarity=0.199  Sum_probs=38.8

Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132           21 SFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus        21 ~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      .|.......++.+|+||.|+|+.|+.+..  ++..++..  ..  .+...|+|+||.||..
T Consensus       135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~--~~--gnKkLILVLNK~DLVP  191 (435)
T KOG2484|consen  135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ--AH--GNKKLILVLNKIDLVP  191 (435)
T ss_pred             HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh--cc--CCceEEEEeehhccCC
Confidence            45666677788999999999999986532  33333221  11  4588999999999953

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=96.85  E-value=0.011  Score=46.30  Aligned_cols=94  Identities=22%  Similarity=0.191  Sum_probs=57.0

Q ss_pred             EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC---CCHHHHH
Q 031132           13 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA---VSTEEGE   89 (165)
Q Consensus        13 l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~   89 (165)
                      =.|+||+.+|-...-.=...-|+.|+|+.++|.+ ....++.+-...+.  .=..+++++||.|+.++.+   +-+-+.+
T Consensus       121 H~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~R  197 (449)
T KOG0460|consen  121 HTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIR  197 (449)
T ss_pred             cCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc--CCceEEEEEecccccCCHHHHHHHHHHHH
Confidence            3788999887553333345669999999999853 23333333333333  2235788899999864322   2223456


Q ss_pred             HHHHHcCC-----eEEEecC---CCCCC
Q 031132           90 QFAKEHGL-----IFMEASA---KTAQN  109 (165)
Q Consensus        90 ~~~~~~~~-----~~~~vSa---~~~~~  109 (165)
                      ++...+++     |++.-||   +.|.+
T Consensus       198 ElLse~gf~Gd~~PvI~GSAL~ALeg~~  225 (449)
T KOG0460|consen  198 ELLSEFGFDGDNTPVIRGSALCALEGRQ  225 (449)
T ss_pred             HHHHHcCCCCCCCCeeecchhhhhcCCC
Confidence            67777764     5777664   45644

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.79  E-value=0.017  Score=44.49  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=67.8

Q ss_pred             EEEEEEEeCCC--chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132            8 PIKLQIWDTAG--QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         8 ~~~~~l~Dt~G--~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      .+-+.|.+|-|  |.+     -....-+|.+++|.-+.-.+....++   ..+..     +-=++|+||.|..... ...
T Consensus       143 G~DvIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK---~GimE-----iaDi~vINKaD~~~A~-~a~  208 (323)
T COG1703         143 GYDVIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIK---AGIME-----IADIIVINKADRKGAE-KAA  208 (323)
T ss_pred             CCCEEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHH---hhhhh-----hhheeeEeccChhhHH-HHH
Confidence            34466777764  443     33456789999988776654444333   33322     2346788999964321 111


Q ss_pred             HHHHHHHHH---------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132           86 EEGEQFAKE---------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD  131 (165)
Q Consensus        86 ~~~~~~~~~---------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~  131 (165)
                      .+.......         +.-+++.+||.+|+|++++++.+.++.......+.+.
T Consensus       209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~~  263 (323)
T COG1703         209 RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLFT  263 (323)
T ss_pred             HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhccccc
Confidence            111111111         1235999999999999999999999888877776553

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.78  E-value=0.0036  Score=44.58  Aligned_cols=42  Identities=24%  Similarity=0.179  Sum_probs=27.5

Q ss_pred             cEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132           34 AGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus        34 d~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      |++++|+|+.++.+.  .++...   +. ....+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~---~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEA---VL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHH---HH-hccCCCCEEEEEehhhcCC
Confidence            789999999886332  222222   11 1114689999999999953

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.77  E-value=0.023  Score=41.75  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=60.3

Q ss_pred             eCCEEEEEEEEeCCCchhh-------hh-h---hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEE
Q 031132            4 IDNKPIKLQIWDTAGQESF-------RS-I---TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIML   70 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~-------~~-~---~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~iv   70 (165)
                      ++|.  .+.++||||..+.       .. +   ......+.+++++|+.... -+ +.....+..+...+.  .-..++|
T Consensus        46 ~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~t-~~~~~~l~~l~~~FG~~~~k~~iv  121 (212)
T PF04548_consen   46 VDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-FT-EEDREVLELLQEIFGEEIWKHTIV  121 (212)
T ss_dssp             ETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--S-HHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred             ecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-ch-HHHHHHHHHHHHHccHHHHhHhhH
Confidence            4554  4789999995321       11 1   1223457899999999883 22 222233344444432  1246888


Q ss_pred             EeeCCCCCCCCCCC-------HHHHHHHHHHcCCeEEEecCC------CCCCHHHHHHHHHHHHH
Q 031132           71 IGNKCDLAHRRAVS-------TEEGEQFAKEHGLIFMEASAK------TAQNVEEAFIKTAATIY  122 (165)
Q Consensus        71 v~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~vSa~------~~~~i~~l~~~l~~~i~  122 (165)
                      |.|..|......+.       ....+.+....+-.|+..+..      ....+.++++.+-+.+.
T Consensus       122 vfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~  186 (212)
T PF04548_consen  122 VFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQ  186 (212)
T ss_dssp             EEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence            99999865443311       122445566667778777655      12235555555444433

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PTZ00258 GTP-binding protein; Provisional

Probab=96.71  E-value=0.016  Score=46.54  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=27.8

Q ss_pred             CeEEEEeeCC--CCCCCCCCCHHHHHHHHHHc-CCeEEEecCCCCC
Q 031132           66 MTIMLIGNKC--DLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQ  108 (165)
Q Consensus        66 ~p~ivv~nK~--Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~  108 (165)
                      +|+++++|+.  |+.....-....+..++... +.+++.+||+...
T Consensus       221 KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        221 KPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             CCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            8999999999  76222212234455555566 4789999976443

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.62  E-value=0.013  Score=44.20  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=41.1

Q ss_pred             EEEEEEeCCCchhhh--h-----h---hHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeC
Q 031132            9 IKLQIWDTAGQESFR--S-----I---TRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNK   74 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~--~-----~---~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK   74 (165)
                      ..+.+|||||.....  .     .   ...+++  ..|+++||..++....-......++.+...+.  .-.++++|.||
T Consensus        79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~  158 (249)
T cd01853          79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTH  158 (249)
T ss_pred             eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeC
Confidence            468999999976431  0     1   122333  57889998766643211122234444444332  12579999999


Q ss_pred             CCCC
Q 031132           75 CDLA   78 (165)
Q Consensus        75 ~Dl~   78 (165)
                      +|..
T Consensus       159 ~d~~  162 (249)
T cd01853         159 AASS  162 (249)
T ss_pred             CccC
Confidence            9974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.56  E-value=0.0087  Score=46.89  Aligned_cols=94  Identities=19%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CCc-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH-HHHHH
Q 031132           17 AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE-QFAKE   94 (165)
Q Consensus        17 ~G~-~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~   94 (165)
                      +|+ .++.......+..+|+|+-|+|+.++.+...     ..+.... .+.|.++|+||.||.....  ..... .+..+
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~~~~~--~~~W~~~~~~~   89 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLAPKEV--TKKWKKYFKKE   89 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcCCHHH--HHHHHHHHHhc
Confidence            454 4566677778999999999999999764431     1222222 3456699999999954332  22222 33334


Q ss_pred             cCCeEEEecCCCCCCHHHHHHHHH
Q 031132           95 HGLIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        95 ~~~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      .+...+.+++..+.+...+...+.
T Consensus        90 ~~~~~~~v~~~~~~~~~~i~~~~~  113 (322)
T COG1161          90 EGIKPIFVSAKSRQGGKKIRKALE  113 (322)
T ss_pred             CCCccEEEEeecccCccchHHHHH
Confidence            467788888888877766664333

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.36  E-value=0.0023  Score=48.30  Aligned_cols=105  Identities=13%  Similarity=0.098  Sum_probs=61.2

Q ss_pred             EEEEeCC--CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132           11 LQIWDTA--GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus        11 ~~l~Dt~--G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      +.|.+|-  ||.+     -....-+|.+++|.-+.-.+....++.   .+..     +.=++|.||.|+.... ....+.
T Consensus       124 ~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimE-----iaDi~vVNKaD~~gA~-~~~~~l  189 (266)
T PF03308_consen  124 VIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKA---GIME-----IADIFVVNKADRPGAD-RTVRDL  189 (266)
T ss_dssp             EEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-T---THHH-----H-SEEEEE--SHHHHH-HHHHHH
T ss_pred             EEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhh---hhhh-----hccEEEEeCCChHHHH-HHHHHH
Confidence            4566665  4554     334667899999998876544443322   1222     2346778999964321 112222


Q ss_pred             HHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           89 EQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        89 ~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      ......       +.-+++.+||.++.|++++++.|.+.--.....+.
T Consensus       190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~  237 (266)
T PF03308_consen  190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGE  237 (266)
T ss_dssp             HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcch
Confidence            222221       12469999999999999999999886665555443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.32  E-value=0.023  Score=45.29  Aligned_cols=101  Identities=18%  Similarity=0.192  Sum_probs=60.4

Q ss_pred             EEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC----
Q 031132           10 KLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV----   83 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----   83 (165)
                      .+.|+|.+|..+|-...-+-+.  ..|...+|+.++..-.. ..++.+..+..   .++|++++.+|+|+.....+    
T Consensus       250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~~tv  325 (591)
T KOG1143|consen  250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA---LNIPFFVLVTKMDLVDRQGLKKTV  325 (591)
T ss_pred             eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH---hCCCeEEEEEeeccccchhHHHHH
Confidence            4789999999998664333222  35777888887654322 12233333332   37999999999999643111    


Q ss_pred             --------------------CHHHHHHHHHH----cCCeEEEecCCCCCCHHHHH
Q 031132           84 --------------------STEEGEQFAKE----HGLIFMEASAKTAQNVEEAF  114 (165)
Q Consensus        84 --------------------~~~~~~~~~~~----~~~~~~~vSa~~~~~i~~l~  114 (165)
                                          +..++-..+++    .=.|++-+|+.+|+|+.-+-
T Consensus       326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence                                11122222222    22468889999999976543

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.038  Score=46.94  Aligned_cols=92  Identities=18%  Similarity=0.168  Sum_probs=57.8

Q ss_pred             EEEEeCCCch---hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132           11 LQIWDTAGQE---SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus        11 ~~l~Dt~G~~---~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      +.+.|.||.+   ......-.+...+|++|||.++.+.-+..+.    ..+......+..++|+-||+|.....+...+.
T Consensus       208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek----~Ff~~vs~~KpniFIlnnkwDasase~ec~e~  283 (749)
T KOG0448|consen  208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK----QFFHKVSEEKPNIFILNNKWDASASEPECKED  283 (749)
T ss_pred             ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH----HHHHHhhccCCcEEEEechhhhhcccHHHHHH
Confidence            5688999875   3455556778899999999998875433332    33333332345578888999986554444444


Q ss_pred             HHHHHHHcC--------CeEEEecCCC
Q 031132           88 GEQFAKEHG--------LIFMEASAKT  106 (165)
Q Consensus        88 ~~~~~~~~~--------~~~~~vSa~~  106 (165)
                      +......++        -.+++|||+.
T Consensus       284 V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  284 VLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            444333332        2488899763

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.01  Score=47.13  Aligned_cols=67  Identities=19%  Similarity=0.317  Sum_probs=47.7

Q ss_pred             EEEEEeCCCchh-----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132           10 KLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus        10 ~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      .+.+.||+|.-.           |....+=+...+|.||++||+..-+--++....+..+..+   .-.+-||.||.|..
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---EdkiRVVLNKADqV  224 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKIRVVLNKADQV  224 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cceeEEEecccccc
Confidence            468899999532           3445666788999999999987655455555555555444   34677889999975


Q ss_pred             C
Q 031132           79 H   79 (165)
Q Consensus        79 ~   79 (165)
                      +
T Consensus       225 d  225 (532)
T KOG1954|consen  225 D  225 (532)
T ss_pred             C
Confidence            4

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=96.23  E-value=0.076  Score=37.76  Aligned_cols=87  Identities=8%  Similarity=0.036  Sum_probs=63.5

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 031132           32 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  111 (165)
Q Consensus        32 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  111 (165)
                      ..|.|+|++|.+...|+.....-+..+......++-++++ +-....+...+..+.+..++..+..|++++--.+.++..
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~-t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~  142 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLA-TNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT  142 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEE-cCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence            4699999999999999999988888776554445555554 444444456688999999999999999988776655544


Q ss_pred             HHHHHHHH
Q 031132          112 EAFIKTAA  119 (165)
Q Consensus       112 ~l~~~l~~  119 (165)
                      .+=..|++
T Consensus       143 ~lAqRLL~  150 (176)
T PF11111_consen  143 SLAQRLLR  150 (176)
T ss_pred             HHHHHHHH
Confidence            44444433

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.03  E-value=0.018  Score=49.31  Aligned_cols=69  Identities=26%  Similarity=0.271  Sum_probs=49.3

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      -.+.+.+.++|+||+-+|........+=+|+.++++|+...-...... .+...+.   .+...++|+||+|.
T Consensus        68 ~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~~---~~~~~~lvinkidr  136 (887)
T KOG0467|consen   68 LHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI---EGLKPILVINKIDR  136 (887)
T ss_pred             ccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHHH---ccCceEEEEehhhh
Confidence            346678999999999999998888888999999999987643222111 1111111   24667888999993

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=95.99  E-value=0.049  Score=45.78  Aligned_cols=72  Identities=22%  Similarity=0.250  Sum_probs=51.3

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      -++.+.+.++||||+-+|.-.-+.-++--|+.|+|+|+...-.-....-|.+ +.+   .++|.+.+.||.|....
T Consensus       100 ~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r---y~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  100 TWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR---YNVPRICFINKMDRMGA  171 (721)
T ss_pred             eeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh---cCCCeEEEEehhhhcCC
Confidence            3457889999999998887666667778899999999876432222222222 222   58999999999997543

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=95.96  E-value=0.084  Score=42.19  Aligned_cols=106  Identities=12%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             EEEEEeCCCchhhhhhh-----HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC------
Q 031132           10 KLQIWDTAGQESFRSIT-----RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA------   78 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~-----~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~------   78 (165)
                      .+.+||.||.....-..     ..-+..-|.+|++.+-.    |.+..-++....+.  .++|+++|-||.|..      
T Consensus        87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~  160 (376)
T PF05049_consen   87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERR  160 (376)
T ss_dssp             TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHC
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhc
Confidence            37899999863221112     22355679888877643    33333333222222  478999999999951      


Q ss_pred             -CCCCCCHHH----HHHHHHH----cCC---eEEEecCCC--CCCHHHHHHHHHHHH
Q 031132           79 -HRRAVSTEE----GEQFAKE----HGL---IFMEASAKT--AQNVEEAFIKTAATI  121 (165)
Q Consensus        79 -~~~~~~~~~----~~~~~~~----~~~---~~~~vSa~~--~~~i~~l~~~l~~~i  121 (165)
                       .++..+.++    ++..+.+    .++   ++|.+|..+  ...+..+.+.|.+.+
T Consensus       161 ~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL  217 (376)
T PF05049_consen  161 RKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL  217 (376)
T ss_dssp             C-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence             122333322    2222221    243   388899875  455666766666544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=95.75  E-value=0.02  Score=44.73  Aligned_cols=118  Identities=19%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             EEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe----EEEEeeCCC
Q 031132           10 KLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT----IMLIGNKCD   76 (165)
Q Consensus        10 ~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p----~ivv~nK~D   76 (165)
                      .+.+.||-|.-.         |.+..+ ....+|.++-|.|.+++..-......+.-+....-+..|    ++=|-||.|
T Consensus       227 ~vlltDTvGFisdLP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD  305 (410)
T KOG0410|consen  227 FVLLTDTVGFISDLPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKID  305 (410)
T ss_pred             EEEEeechhhhhhCcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccc
Confidence            367889988632         333333 367899999999999987665555555544444222223    344678888


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcc
Q 031132           77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYG  138 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~  138 (165)
                      ..... ...       +  ..-.+.+||.+|+|.+++++.+-..+...-.-.+.-.+.+..+
T Consensus       306 ~e~~~-~e~-------E--~n~~v~isaltgdgl~el~~a~~~kv~~~t~~~e~~Lr~d~gd  357 (410)
T KOG0410|consen  306 YEEDE-VEE-------E--KNLDVGISALTGDGLEELLKAEETKVASETTVDEDQLRNDDGD  357 (410)
T ss_pred             ccccc-Ccc-------c--cCCccccccccCccHHHHHHHHHHHhhhhheeeeEEeecCCCc
Confidence            64322 111       1  1126779999999999999988887766544444444444443

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=95.67  E-value=0.19  Score=38.19  Aligned_cols=50  Identities=20%  Similarity=0.250  Sum_probs=34.4

Q ss_pred             CeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        66 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ++++.|.||+|.     ++.+++..++.+.+  .+-+|...+-|++.+++.+-+.+.
T Consensus       239 ~~ClYvYnKID~-----vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  239 IKCLYVYNKIDQ-----VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEEEEEeeccce-----ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence            567777777774     45666666665443  444677888899998888877654

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=95.54  E-value=0.033  Score=46.00  Aligned_cols=81  Identities=23%  Similarity=0.230  Sum_probs=54.1

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC-CCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-HRRAV   83 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-~~~~~   83 (165)
                      ++..+.+.++|.+|+-+|.+.....++-.|+.++|+|+-+.--...---+.+.+.    ..+..+++.||.|.. -+-++
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~  169 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDRALLELQL  169 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhHHHHhhcC
Confidence            5667889999999999999988888999999999999877532221111112222    234456678999951 12344


Q ss_pred             CHHHHH
Q 031132           84 STEEGE   89 (165)
Q Consensus        84 ~~~~~~   89 (165)
                      +.++..
T Consensus       170 ~~EeLy  175 (842)
T KOG0469|consen  170 SQEELY  175 (842)
T ss_pred             CHHHHH
Confidence            555443

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.49  E-value=0.13  Score=39.30  Aligned_cols=98  Identities=18%  Similarity=0.074  Sum_probs=57.6

Q ss_pred             EEEEEEEeCCCchhhhhhh----Hh---hh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132            8 PIKLQIWDTAGQESFRSIT----RS---YY-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~----~~---~~-----~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      .+.+.+.||+|........    ..   ..     ..+|.+++|+|++...  +.+. ....+.+..   .+.-+|.||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEcc
Confidence            4568899999986432221    11   11     2389999999997532  2222 223333222   2457788999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 031132           76 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  117 (165)
Q Consensus        76 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l  117 (165)
                      |-...    .-.........+.|+.+++  +|++++++-..-
T Consensus       228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~  263 (272)
T TIGR00064       228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPFD  263 (272)
T ss_pred             CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccCC
Confidence            96332    1233444556689988887  788877664433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=95.33  E-value=0.22  Score=39.29  Aligned_cols=104  Identities=13%  Similarity=0.051  Sum_probs=60.8

Q ss_pred             EEEEEEeCCCchhhhh-h---hHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRS-I---TRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~-~---~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +.+.+.||+|...... +   ...+  .-+.|.+++|+|++....   .......+....   ..--+++||.|-.... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~---~~~giIlTKlD~~~~~-  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV---GIDGVILTKVDADAKG-  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC---CCCEEEEeeecCCCCc-
Confidence            4589999999863211 1   1222  235789999999976432   222222232221   2356778999974322 


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                         -.+..++...+.|+.+++  +|++++++...=-+.+..+
T Consensus       296 ---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~~  332 (336)
T PRK14974        296 ---GAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVDK  332 (336)
T ss_pred             ---cHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHHH
Confidence               123334455689988887  7899888765544444443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=95.25  E-value=0.09  Score=48.09  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             EEEEeCCCch--------hhhhhhHhhhc---------CCcEEEEEEeCCChh-----h----HHHHHHHHHHHHHhcCC
Q 031132           11 LQIWDTAGQE--------SFRSITRSYYR---------GAAGALLVYDITRRE-----T----FNHLASWLEDARQHANA   64 (165)
Q Consensus        11 ~~l~Dt~G~~--------~~~~~~~~~~~---------~ad~vi~v~D~~~~~-----s----~~~~~~~~~~i~~~~~~   64 (165)
                      -.++||+|.-        .....|..++.         ..+|||+++|+++--     .    -..++..+.++......
T Consensus       163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~  242 (1169)
T TIGR03348       163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA  242 (1169)
T ss_pred             EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3589999831        22344555433         579999999987531     1    12445566666666667


Q ss_pred             CCeEEEEeeCCCCCC
Q 031132           65 NMTIMLIGNKCDLAH   79 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~~   79 (165)
                      ..||+|+.||+|+..
T Consensus       243 ~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       243 RFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCEEEEEecchhhc
Confidence            899999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=95.22  E-value=0.3  Score=38.97  Aligned_cols=40  Identities=13%  Similarity=0.107  Sum_probs=27.0

Q ss_pred             CeEEEEeeCCCCC-CCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132           66 MTIMLIGNKCDLA-HRRAVSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        66 ~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      +|+++++|+.|.. ....-....+..++...+.+++.+||.
T Consensus       200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~  240 (364)
T PRK09601        200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK  240 (364)
T ss_pred             CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence            8999999999852 111122344555666678889999975

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=95.20  E-value=0.092  Score=39.25  Aligned_cols=77  Identities=26%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             EEEEEEeC-CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CeEEEEeeCCCCCCCCCCCHH
Q 031132            9 IKLQIWDT-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         9 ~~~~l~Dt-~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      ..+.+.|| +|.+.+..   ...+++|.+|+|+|++- .++........ +...  .+ .++.+|+||.|-.      ..
T Consensus       134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri~~-L~~e--lg~k~i~~V~NKv~e~------e~  200 (255)
T COG3640         134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERIKE-LAEE--LGIKRIFVVLNKVDEE------EE  200 (255)
T ss_pred             CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHHHH-HHHH--hCCceEEEEEeeccch------hH
Confidence            45678887 57665543   44678999999999874 34443333222 2222  24 7899999999842      23


Q ss_pred             HHHHHHHHcCCe
Q 031132           87 EGEQFAKEHGLI   98 (165)
Q Consensus        87 ~~~~~~~~~~~~   98 (165)
                      .....+...+.+
T Consensus       201 ~~~~~~~~~~~~  212 (255)
T COG3640         201 LLRELAEELGLE  212 (255)
T ss_pred             HHHhhhhccCCe
Confidence            334445555554

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=95.04  E-value=0.53  Score=37.49  Aligned_cols=39  Identities=10%  Similarity=0.117  Sum_probs=28.5

Q ss_pred             CeEEEEeeCCCCCCCCCCC--HHHHHHHHHHcCCeEEEecCC
Q 031132           66 MTIMLIGNKCDLAHRRAVS--TEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        66 ~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      +|+++++||.|...... +  ...+..++...+.+++.+||.
T Consensus       207 KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~  247 (372)
T COG0012         207 KPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAA  247 (372)
T ss_pred             CCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHH
Confidence            89999999999753321 2  345566666777889999975

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=95.01  E-value=0.073  Score=40.58  Aligned_cols=93  Identities=18%  Similarity=0.310  Sum_probs=52.3

Q ss_pred             CCcEEEEEEeCCCh-----h--hHH----HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC-----CCCHHHHHHHHHHc
Q 031132           32 GAAGALLVYDITRR-----E--TFN----HLASWLEDARQHANANMTIMLIGNKCDLAHRR-----AVSTEEGEQFAKEH   95 (165)
Q Consensus        32 ~ad~vi~v~D~~~~-----~--s~~----~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~   95 (165)
                      ..+|||+++|+++-     .  .+.    .++.-+..+........||+|++||+|+...-     .++.++.   .+.+
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r---~q~l  101 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEER---EQVL  101 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHH---hCCc
Confidence            45999999997631     1  111    23334455555555689999999999986432     1222222   1223


Q ss_pred             CCeEEEecCCCCCC---HHHHHHHHHHHHHHHHhc
Q 031132           96 GLIFMEASAKTAQN---VEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        96 ~~~~~~vSa~~~~~---i~~l~~~l~~~i~~~~~~  127 (165)
                      |+.+-.-.......   +.+.|+.+...+..+...
T Consensus       102 G~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  136 (266)
T PF14331_consen  102 GFTFPYDEDADGDAWAWFDEEFDELVARLNARVLE  136 (266)
T ss_pred             ccccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            54422222233334   777777777766665443

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=94.90  E-value=0.15  Score=34.79  Aligned_cols=65  Identities=9%  Similarity=0.137  Sum_probs=43.6

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      +.+.++|+++..  .......+..+|.++++.+++. .++..+...+..+.... ...++.++.|+.+-
T Consensus        45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            457899998753  2333567889999999999864 44554445555554332 34567789999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PHA02518 ParA-like protein; Provisional

Probab=94.84  E-value=0.32  Score=35.12  Aligned_cols=67  Identities=13%  Similarity=0.089  Sum_probs=41.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHANANMT-IMLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl   77 (165)
                      .+.+.++|++|..  .......+..+|.+|+++.++..  .....+..++..+... ..+.| ..++.|+.+-
T Consensus        76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~n~~~~  145 (211)
T PHA02518         76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEV-TDGLPKFAFIISRAIK  145 (211)
T ss_pred             cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhh-CCCCceEEEEEeccCC
Confidence            4678999999874  45566778899999999988742  2233343444433222 22344 4566777653

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=94.63  E-value=0.67  Score=39.06  Aligned_cols=82  Identities=18%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             EEEEEeCCCc-------------hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCC
Q 031132           10 KLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKC   75 (165)
Q Consensus        10 ~~~l~Dt~G~-------------~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~   75 (165)
                      +..+.|.||-             +....+...|..+..++|+++--   .|.+.-+..+..+...+. .+...|+|+||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            3567898884             23566788999999999999832   223333334444444444 578899999999


Q ss_pred             CCCCCCCCCHHHHHHHHHH
Q 031132           76 DLAHRRAVSTEEGEQFAKE   94 (165)
Q Consensus        76 Dl~~~~~~~~~~~~~~~~~   94 (165)
                      |+.++...++..++....-
T Consensus       490 DlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             chhhhccCCHHHHHHHHhc
Confidence            9976666677777766543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=94.57  E-value=0.43  Score=37.42  Aligned_cols=106  Identities=19%  Similarity=0.127  Sum_probs=61.0

Q ss_pred             EEEEEEEEeCCCchhhhh----hhHhh--------hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            7 KPIKLQIWDTAGQESFRS----ITRSY--------YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~----~~~~~--------~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      ..+.+.+.||+|......    ....+        -...+.+++|+|++...  +.+... ..+....   .+.-+|.||
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlTK  268 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILTK  268 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEEC
Confidence            345689999999743211    11111        12468899999998642  223221 2222221   345678999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .|-....    -.+..++...++|+.+++  +|++++++-..--+.+...
T Consensus       269 lD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~~~~  312 (318)
T PRK10416        269 LDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEFVDA  312 (318)
T ss_pred             CCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHHHHH
Confidence            9953221    233444566799988887  7888877654444444443

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=94.51  E-value=0.78  Score=32.04  Aligned_cols=84  Identities=12%  Similarity=-0.030  Sum_probs=51.1

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE   89 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~   89 (165)
                      .+.++|+++....  .....+..+|.+|++++++. .++..+..++..+...  ......++.|+.+-...  .......
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence            4789999876433  23445679999999998764 3455555555555442  22456788999985321  2222234


Q ss_pred             HHHHHcCCeEE
Q 031132           90 QFAKEHGLIFM  100 (165)
Q Consensus        90 ~~~~~~~~~~~  100 (165)
                      .+...++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44455666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=94.12  E-value=0.16  Score=40.61  Aligned_cols=123  Identities=12%  Similarity=0.071  Sum_probs=65.4

Q ss_pred             EEEEEeCCCchhhhhhh--HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CH
Q 031132           10 KLQIWDTAGQESFRSIT--RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--ST   85 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~--~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~   85 (165)
                      .+.|+|.+|+++|-...  -..-.-.|...+++-++.. -....++.+...+.   ..+|+++|.||+|+-....+  +.
T Consensus       220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMCPANiLqEtm  295 (641)
T KOG0463|consen  220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMCPANILQETM  295 (641)
T ss_pred             eEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccCcHHHHHHHH
Confidence            37899999999875432  2222345777777765432 12222333322222   36899999999998432211  11


Q ss_pred             HHHHHHHHH--------------------------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcce
Q 031132           86 EEGEQFAKE--------------------------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGI  139 (165)
Q Consensus        86 ~~~~~~~~~--------------------------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~  139 (165)
                      ..+..+.+.                          .-+|+|.+|-.+|+|+.-+..     .+.....+..-.++++..+
T Consensus       296 Kll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm-----FLNlls~R~~~~E~~PAeF  370 (641)
T KOG0463|consen  296 KLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM-----FLNLLSLRRQLNENDPAEF  370 (641)
T ss_pred             HHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH-----HHhhcCcccccccCCCcce
Confidence            111112211                          225688899999999764433     3333333333444555555


Q ss_pred             ee
Q 031132          140 KV  141 (165)
Q Consensus       140 ~~  141 (165)
                      +.
T Consensus       371 QI  372 (641)
T KOG0463|consen  371 QI  372 (641)
T ss_pred             ee
Confidence            44

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=94.05  E-value=0.062  Score=43.17  Aligned_cols=106  Identities=23%  Similarity=0.197  Sum_probs=62.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHH--HHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLED--ARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~--i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .-++.+.|++|+..|-.-.-.-...||.-++|+.+...   ..|+.-.+....  +.+.. .-...|+++||+|-+.. .
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtv-n  233 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTV-N  233 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCcc-C
Confidence            34688999999988765433345678988999887542   223322121111  12221 33568889999996421 1


Q ss_pred             CC-------HHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Q 031132           83 VS-------TEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        83 ~~-------~~~~~~~~~~~~------~~~~~vSa~~~~~i~~l~~  115 (165)
                      .+       .+....+....|      ..++++|..+|.++++..+
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            11       122333333333      3489999999999988664

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=93.86  E-value=0.72  Score=36.75  Aligned_cols=68  Identities=12%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      .+.+.++|.|  .-+......++..+|-+++|++.+- .++...++.+..+.+......+..+++|+.+..
T Consensus       217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~  284 (366)
T COG4963         217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKRLRPNDPKPILVLNRVGVP  284 (366)
T ss_pred             cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC
Confidence            4567889988  4456677889999999999999754 567888888888877765567788889999863

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=93.83  E-value=0.56  Score=30.38  Aligned_cols=62  Identities=16%  Similarity=0.087  Sum_probs=40.6

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCeEEEEeeC
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNK   74 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK   74 (165)
                      .+.+.|+++....  .....+..+|.++++++++ ..+...+..++..+...... ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            3578999876532  2345678899999999875 45566666666666554322 3456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=93.70  E-value=0.72  Score=37.69  Aligned_cols=85  Identities=11%  Similarity=-0.009  Sum_probs=47.0

Q ss_pred             EEEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+.+.|.||+|...... +..   .+  ....+-+++|+|++....-...   ...+...   -.+.-+|+||.|-....
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~---~~~~g~IlTKlD~~arg  255 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS---VDVGSVIITKLDGHAKG  255 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc---cCCcEEEEECccCCCCc
Confidence            46789999999854322 111   11  2256889999998764322222   2333222   23567889999964322


Q ss_pred             CCCHHHHHHHHHHcCCeEEEe
Q 031132           82 AVSTEEGEQFAKEHGLIFMEA  102 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~v  102 (165)
                          -.+..+....+.|+.++
T Consensus       256 ----G~aLs~~~~t~~PI~fi  272 (429)
T TIGR01425       256 ----GGALSAVAATKSPIIFI  272 (429)
T ss_pred             ----cHHhhhHHHHCCCeEEE
Confidence                11233344456665544

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=92.99  E-value=0.1  Score=39.93  Aligned_cols=103  Identities=18%  Similarity=0.204  Sum_probs=61.5

Q ss_pred             EEEEEeCCCc----------hhhhhhhHhhhcCCc---EEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132           10 KLQIWDTAGQ----------ESFRSITRSYYRGAA---GALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus        10 ~~~l~Dt~G~----------~~~~~~~~~~~~~ad---~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      .+.+.|.+|-          ..+..+...|+.+.+   -+++++|++-+  ..-.....|+.+      .++|..+|.||
T Consensus       184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK  257 (320)
T KOG2486|consen  184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTK  257 (320)
T ss_pred             eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeeh
Confidence            4678899982          346677777766543   45666676653  222333334433      47999999999


Q ss_pred             CCCCCCCC----CCHHHHHH----H---HHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132           75 CDLAHRRA----VSTEEGEQ----F---AKEHGLIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        75 ~Dl~~~~~----~~~~~~~~----~---~~~~~~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      +|......    -....++.    +   ...-..+++.+|+.++.|+++++..+.
T Consensus       258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence            99742211    01111111    1   111235678899999999998876554

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=92.68  E-value=1.9  Score=31.90  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=42.4

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .+.++|+++..  .......+..+|.+++++.++. .++..+...+..+........++.++.|+.|.
T Consensus       116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~  180 (246)
T TIGR03371       116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAGSGPRIGPHFLINQFDP  180 (246)
T ss_pred             CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence            58899999853  3455667789999999998853 44555543332232211134557789999985

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=92.62  E-value=0.92  Score=39.19  Aligned_cols=71  Identities=14%  Similarity=0.145  Sum_probs=44.8

Q ss_pred             EEEEEEeCCCchhhh-------hh---hHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCeEEEEeeC
Q 031132            9 IKLQIWDTAGQESFR-------SI---TRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNK   74 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~-------~~---~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK   74 (165)
                      ..+.++||||.....       .+   ...+++  .+|++|+|..++......+-..++..+...+..  -..+||+.|+
T Consensus       166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFTh  245 (763)
T TIGR00993       166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTH  245 (763)
T ss_pred             ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeC
Confidence            458999999976421       11   122333  589999999876443332333566666666542  2468999999


Q ss_pred             CCCCC
Q 031132           75 CDLAH   79 (165)
Q Consensus        75 ~Dl~~   79 (165)
                      .|...
T Consensus       246 gD~lp  250 (763)
T TIGR00993       246 AASAP  250 (763)
T ss_pred             CccCC
Confidence            99753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00959 ffh signal recognition particle protein

Probab=91.97  E-value=2.2  Score=34.97  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=49.5

Q ss_pred             EEEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+.+.+.||+|...... +..   .+  .-..|.+++|+|+...   .+...+...+....  + ..=+|.||.|-....
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~-i~giIlTKlD~~~~~  255 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--G-LTGVVLTKLDGDARG  255 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence            35688999999643221 111   11  2357889999998754   33434444444332  2 345668999953221


Q ss_pred             CCCHHHHHHHHHHcCCeEEEec
Q 031132           82 AVSTEEGEQFAKEHGLIFMEAS  103 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vS  103 (165)
                          -.+..+....++|+.+++
T Consensus       256 ----G~~lsi~~~~~~PI~fi~  273 (428)
T TIGR00959       256 ----GAALSVRSVTGKPIKFIG  273 (428)
T ss_pred             ----cHHHHHHHHHCcCEEEEe
Confidence                125556667788866654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=91.68  E-value=1.4  Score=33.73  Aligned_cols=79  Identities=25%  Similarity=0.309  Sum_probs=51.3

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE   89 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~   89 (165)
                      .+.+.|++---. -+ .-..+.++|.+|+|--+|- .++.+++..+..+...   ++|..+|+||.++..    +  ++.
T Consensus       165 ~~~IIDsaaG~g-Cp-Vi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f---~ip~~iViNr~~~g~----s--~ie  232 (284)
T COG1149         165 DLLIIDSAAGTG-CP-VIASLKGADLAILVTEPTP-FGLHDLKRALELVEHF---GIPTGIVINRYNLGD----S--EIE  232 (284)
T ss_pred             ceeEEecCCCCC-Ch-HHHhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh---CCceEEEEecCCCCc----h--HHH
Confidence            456677652211 00 1234679999999998874 3456666655554444   799999999996521    2  667


Q ss_pred             HHHHHcCCeEE
Q 031132           90 QFAKEHGLIFM  100 (165)
Q Consensus        90 ~~~~~~~~~~~  100 (165)
                      .++.+.+++++
T Consensus       233 ~~~~e~gi~il  243 (284)
T COG1149         233 EYCEEEGIPIL  243 (284)
T ss_pred             HHHHHcCCCee
Confidence            77888887754

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=91.43  E-value=2.3  Score=34.87  Aligned_cols=84  Identities=18%  Similarity=0.085  Sum_probs=47.6

Q ss_pred             EEEEEeCCCchhhhhh-h---Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132           10 KLQIWDTAGQESFRSI-T---RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~-~---~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      .+.+.||+|....... .   ..+  +-.+|.+++|+|++...   +.......+....  + ..-+|.||.|-....  
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a~~--  248 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTAKG--  248 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCCcc--
Confidence            6789999998653221 1   111  33689999999987742   2222223332221  1 335678999963221  


Q ss_pred             CHHHHHHHHHHcCCeEEEec
Q 031132           84 STEEGEQFAKEHGLIFMEAS  103 (165)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~vS  103 (165)
                        -.+..+....+.|+.+++
T Consensus       249 --G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        249 --GGALSAVAETGAPIKFIG  266 (437)
T ss_pred             --cHHHHHHHHHCcCEEEEe
Confidence              233445556677766654

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=91.03  E-value=2.9  Score=30.40  Aligned_cols=89  Identities=16%  Similarity=0.105  Sum_probs=51.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCe-EEEEeeCCCCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMT-IMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~-~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~Dl~~~~~~~   84 (165)
                      .+-+.+.|++|.......... ..+.||.++++++++ ..++..+...+..+..... .+.+ ..++.|+.+..    ..
T Consensus       116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~  190 (212)
T cd02117         116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RE  190 (212)
T ss_pred             CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cH
Confidence            467889999765432222111 124799999999874 4445445554444444322 1333 45899999852    23


Q ss_pred             HHHHHHHHHHcCCeEEE
Q 031132           85 TEEGEQFAKEHGLIFME  101 (165)
Q Consensus        85 ~~~~~~~~~~~~~~~~~  101 (165)
                      ......+...++.+++.
T Consensus       191 ~~~~~~~~~~~~~~vl~  207 (212)
T cd02117         191 TELIDAFAERLGTQVIH  207 (212)
T ss_pred             HHHHHHHHHHcCCCEEE
Confidence            34455666666766443

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>cd03112 CobW_like The function of this protein family is unkown

Probab=91.01  E-value=0.86  Score=31.77  Aligned_cols=65  Identities=14%  Similarity=0.147  Sum_probs=36.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHh--------hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~--------~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .....+.||+|..+-......        ..-..|.+++++|+.........   ...+..+.  ..-=+|++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~---~~~~~~Qi--~~ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQ---QTEAQSQI--AFADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhc---cHHHHHHH--HHCCEEEEecccC
Confidence            456788999998643333322        12357999999998653321111   11111111  1223557899996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=90.89  E-value=2.3  Score=35.79  Aligned_cols=69  Identities=17%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHHHHHHH
Q 031132           49 NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS--AKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        49 ~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~l~~~l~~~i~  122 (165)
                      ..+...+..+.+   .++|++|++||.|...+  ...+.++.++.+.++++..+.  +.=|+|-.++-..+++.+.
T Consensus       359 ~NL~RHIenvr~---FGvPvVVAINKFd~DTe--~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~  429 (557)
T PRK13505        359 ANLERHIENIRK---FGVPVVVAINKFVTDTD--AEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE  429 (557)
T ss_pred             HHHHHHHHHHHH---cCCCEEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence            334444444433   48999999999997432  234567788999999877555  4457788887777777665

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=90.63  E-value=3.4  Score=31.84  Aligned_cols=94  Identities=13%  Similarity=0.141  Sum_probs=45.6

Q ss_pred             eCCEEEEEEEEeCCCch------------------hhhhhhHhhh---------cCCcEEEEEEeCCChh-hHHHHHHHH
Q 031132            4 IDNKPIKLQIWDTAGQE------------------SFRSITRSYY---------RGAAGALLVYDITRRE-TFNHLASWL   55 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~------------------~~~~~~~~~~---------~~ad~vi~v~D~~~~~-s~~~~~~~~   55 (165)
                      =++..+.+.++||+|.-                  .|........         ...|+++++++++... +-.++ ..+
T Consensus        58 e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~m  136 (281)
T PF00735_consen   58 ENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFM  136 (281)
T ss_dssp             ETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHH
T ss_pred             cCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHH
Confidence            36778889999999932                  1111111111         1469999999987532 11122 223


Q ss_pred             HHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HHHHHHHHHHcCCeEEEe
Q 031132           56 EDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEHGLIFMEA  102 (165)
Q Consensus        56 ~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~v  102 (165)
                      +.+.    ..+++|=|+.|+|.....++.  ...+..-+...+++++..
T Consensus       137 k~Ls----~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f  181 (281)
T PF00735_consen  137 KRLS----KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF  181 (281)
T ss_dssp             HHHT----TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred             HHhc----ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence            3333    347788899999974322111  122333344567775543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=90.54  E-value=4  Score=28.54  Aligned_cols=84  Identities=17%  Similarity=0.062  Sum_probs=46.1

Q ss_pred             EEEEEEEeCCCchhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~----~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      ...+.+.||+|...+..    ....+  ....+.+++|+|+....   +...+...+....  + ..-+|.||.|.... 
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~--~-~~~viltk~D~~~~-  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL--G-ITGVILTKLDGDAR-  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC--C-CCEEEEECCcCCCC-
Confidence            34577899999742211    11112  12489999999986543   2223344443332  2 35667799996432 


Q ss_pred             CCCHHHHHHHHHHcCCeEEE
Q 031132           82 AVSTEEGEQFAKEHGLIFME  101 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~  101 (165)
                         ......++...++|+..
T Consensus       155 ---~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         155 ---GGAALSIRAVTGKPIKF  171 (173)
T ss_pred             ---cchhhhhHHHHCcCeEe
Confidence               12223356666777543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=90.35  E-value=4.6  Score=28.15  Aligned_cols=89  Identities=11%  Similarity=0.132  Sum_probs=52.9

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC---
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR---   81 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~---   81 (165)
                      ..+.+.+.|+++...-..  ...+  ..+|.++++..++ ..+...+..++..+.+..  -...-++.|+.+.....   
T Consensus        66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~  140 (169)
T cd02037          66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGK  140 (169)
T ss_pred             CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCC
Confidence            356789999998642111  2222  5789999999875 456677777777766552  22345789998752111   


Q ss_pred             --CC-CHHHHHHHHHHcCCeEE
Q 031132           82 --AV-STEEGEQFAKEHGLIFM  100 (165)
Q Consensus        82 --~~-~~~~~~~~~~~~~~~~~  100 (165)
                        .. .....+.+.+.++.+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~  162 (169)
T cd02037         141 KIYIFGKGGGEKLAEELGVPLL  162 (169)
T ss_pred             cccccCCccHHHHHHHcCCCEE
Confidence              11 12244555666665543

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=90.34  E-value=3.9  Score=30.39  Aligned_cols=65  Identities=15%  Similarity=-0.001  Sum_probs=43.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .+.+.++|+++....  .....+..+|.+|+++.++ ..++..+...+..+....  ..++.++.|+.+-
T Consensus       111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~  175 (261)
T TIGR01968       111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP  175 (261)
T ss_pred             hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence            356789999876432  2334567899999999875 445666666665555432  2367788899874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.68  E-value=0.64  Score=35.29  Aligned_cols=48  Identities=21%  Similarity=0.474  Sum_probs=35.1

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC
Q 031132           29 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAH   79 (165)
Q Consensus        29 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~   79 (165)
                      ......++++|||.+....+..+..|+....-.   ... .+.++||.|...
T Consensus        75 ~a~pl~a~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvp  123 (418)
T KOG4273|consen   75 IAEPLQAFVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVP  123 (418)
T ss_pred             cccceeeEEEEEeccchhhhHHHHhhccccccc---cchhheeccccccccc
Confidence            344568999999999999999999998754322   223 345799999753

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.57  E-value=1.2  Score=36.04  Aligned_cols=52  Identities=13%  Similarity=0.157  Sum_probs=34.0

Q ss_pred             CCEEEEEEEEeCCCchhhhh-hhHhh-----hcCCcEEEEEEeCCChhhHHHHHHHHH
Q 031132            5 DNKPIKLQIWDTAGQESFRS-ITRSY-----YRGAAGALLVYDITRRETFNHLASWLE   56 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~-~~~~~-----~~~ad~vi~v~D~~~~~s~~~~~~~~~   56 (165)
                      ..+++.+.+.||+|+..... +.+..     .-+.|-+|||.|++-...-+.....++
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk  237 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK  237 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence            34567899999999865432 22222     235799999999998665544444333

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=89.50  E-value=4.2  Score=30.67  Aligned_cols=67  Identities=15%  Similarity=0.114  Sum_probs=41.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTI-MLIGNKCD   76 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~-ivv~nK~D   76 (165)
                      .+-+.++||+|.-.... ....+..||.+|+++.+ +..++..+...+..+.... +.+.++ -++.|+.+
T Consensus       117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~  185 (270)
T PRK13185        117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA  185 (270)
T ss_pred             cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence            46789999977543222 22336789999999976 4444555555544443322 245554 47889976

>PRK10867 signal recognition particle protein; Provisional

Probab=89.41  E-value=5.6  Score=32.65  Aligned_cols=86  Identities=16%  Similarity=0.065  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCCchhhhh-hh---Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRS-IT---RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~-~~---~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+.+.+.||+|...... +.   ..+  .-..+.+++|+|+...   .++......+....  + ..-+|.||.|-....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~rg  256 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDARG  256 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence            35688999999653211 11   111  1256788999998753   23333333343321  2 235667999953221


Q ss_pred             CCCHHHHHHHHHHcCCeEEEec
Q 031132           82 AVSTEEGEQFAKEHGLIFMEAS  103 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vS  103 (165)
                          -.+.......++|+.+++
T Consensus       257 ----G~alsi~~~~~~PI~fig  274 (433)
T PRK10867        257 ----GAALSIRAVTGKPIKFIG  274 (433)
T ss_pred             ----cHHHHHHHHHCcCEEEEe
Confidence                124555666788866654

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=89.36  E-value=6.6  Score=33.24  Aligned_cols=95  Identities=17%  Similarity=0.127  Sum_probs=52.7

Q ss_pred             EEEEEEEeCCCchhhhhh-h---Hhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSI-T---RSY-YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~-~---~~~-~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .+.+.|+||+|....... .   ..+ .......++|++.+..  ..++...+..+...    .+.-+|+||.|-..   
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~---  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG---  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence            456889999997432211 1   000 0112356777777642  34444444444322    46778999999632   


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCH-HHHH
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAF  114 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~l~  114 (165)
                       ..-.........++++.+++  +|+.+ +++.
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~  528 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVT--DGQRVPDDLH  528 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEe--CCCCchhhhh
Confidence             23345556667788876664  45665 3443

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=89.15  E-value=1.7  Score=30.75  Aligned_cols=67  Identities=15%  Similarity=0.060  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +-+.+.|+++.....  ....+..+|.+|++++++. .+...+..++..+.........+.+|.|+.+..
T Consensus        95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~  161 (195)
T PF01656_consen   95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPG  161 (195)
T ss_dssp             SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred             ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence            557899998765433  4556779999999999865 447777777766665531213567899999864

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=88.75  E-value=3.4  Score=26.13  Aligned_cols=45  Identities=22%  Similarity=0.194  Sum_probs=30.9

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE   56 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~   56 (165)
                      +.+.++|+++....  .....+..+|.++++++.+ ..++..+..++.
T Consensus        40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            35678999887532  2336677899999999875 445665655554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>CHL00175 minD septum-site determining protein; Validated

Probab=88.45  E-value=5.8  Score=30.14  Aligned_cols=65  Identities=9%  Similarity=-0.055  Sum_probs=42.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .+.+.++||++.-.  ......+..+|.+++|++++ ..++..+...+..+....  .....++.|+.+-
T Consensus       126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~--~~~~~lvvN~~~~  190 (281)
T CHL00175        126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG--IYNVKLLVNRVRP  190 (281)
T ss_pred             CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC--CCceEEEEeccCh
Confidence            46689999997643  23334456799999998865 445555655555555432  2345677899874

>cd03114 ArgK-like The function of this protein family is unkown

Probab=87.61  E-value=2.6  Score=29.10  Aligned_cols=58  Identities=14%  Similarity=0.134  Sum_probs=35.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+-+.|.||+|...   ....++..||-++++..++-.+...-+   ...+..     .-=++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~-----~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI---KAGIME-----IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh---hhhHhh-----hcCEEEEeCCC
Confidence            45688999999652   223478899999999988732222211   112221     23466789987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=87.22  E-value=6.7  Score=29.56  Aligned_cols=68  Identities=19%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTI-MLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~-ivv~nK~Dl   77 (165)
                      .+.+.+.||+|...... ....+..||.+|++..++. .++..+...+..+.... +.+.++ .+|.|+.+.
T Consensus       115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~-~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~  184 (267)
T cd02032         115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDF-DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK  184 (267)
T ss_pred             cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCc-ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence            46788999987643221 1223678999999998753 33444444333333221 234543 467899884

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=87.15  E-value=3.1  Score=30.99  Aligned_cols=67  Identities=12%  Similarity=0.104  Sum_probs=44.3

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHhcCCCCeEEEEeeCCC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA---RQHANANMTIMLIGNKCD   76 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i---~~~~~~~~p~ivv~nK~D   76 (165)
                      +.+.+.|.|++|...  ......+..+|.+|+.+.++.. ++..+...+..+   ....+.+.|..++.|..+
T Consensus        82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~-d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPL-DIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHH-HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            356789999999764  4445667789999999887543 343333333332   222235678889999986

>cd01900 YchF YchF subfamily

Probab=86.98  E-value=1.4  Score=33.81  Aligned_cols=34  Identities=18%  Similarity=0.051  Sum_probs=23.9

Q ss_pred             EEEEEeCCCchhh----hhh---hHhhhcCCcEEEEEEeCC
Q 031132           10 KLQIWDTAGQESF----RSI---TRSYYRGAAGALLVYDIT   43 (165)
Q Consensus        10 ~~~l~Dt~G~~~~----~~~---~~~~~~~ad~vi~v~D~~   43 (165)
                      .++++|+||...-    ..+   ....++.+|++++|+|+.
T Consensus        63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence            5899999996431    122   223467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.95  E-value=5.6  Score=36.72  Aligned_cols=69  Identities=25%  Similarity=0.297  Sum_probs=44.9

Q ss_pred             EEEEeCCCch--------hhhhhhHhh---------hcCCcEEEEEEeCCChhh---------HHHHHHHHHHHHHhcCC
Q 031132           11 LQIWDTAGQE--------SFRSITRSY---------YRGAAGALLVYDITRRET---------FNHLASWLEDARQHANA   64 (165)
Q Consensus        11 ~~l~Dt~G~~--------~~~~~~~~~---------~~~ad~vi~v~D~~~~~s---------~~~~~~~~~~i~~~~~~   64 (165)
                      -.++||+|.-        .-...|..+         .+..+|||+.+|+++--+         ...++.-+.++......
T Consensus       176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~  255 (1188)
T COG3523         176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA  255 (1188)
T ss_pred             eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3578988851        234455544         345799999999865211         12234445556555556


Q ss_pred             CCeEEEEeeCCCCCC
Q 031132           65 NMTIMLIGNKCDLAH   79 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~~   79 (165)
                      ..|++|++||.|+..
T Consensus       256 ~~PVYl~lTk~Dll~  270 (1188)
T COG3523         256 RLPVYLVLTKADLLP  270 (1188)
T ss_pred             CCceEEEEecccccc
Confidence            799999999999854

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.05  E-value=6.2  Score=32.88  Aligned_cols=108  Identities=13%  Similarity=0.125  Sum_probs=61.6

Q ss_pred             EEEEEEEEeCCCchhh-----hhhhHh-hhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            7 KPIKLQIWDTAGQESF-----RSITRS-YYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~-----~~~~~~-~~~~ad~vi~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ..+-+.++||+|+..-     .++... -....|.|+||-.+-- -++.+.+..+-..+..+..+..---++++|.|-.+
T Consensus       465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~  544 (587)
T KOG0781|consen  465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD  544 (587)
T ss_pred             cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence            3456889999997532     222211 1457899999986533 34677777766666666433333456789999643


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEec------CCCCCCHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEAS------AKTAQNVEEAFIKT  117 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vS------a~~~~~i~~l~~~l  117 (165)
                      +.   .-....+....+.|++++-      .+..-|++.+...|
T Consensus       545 d~---vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~l  585 (587)
T KOG0781|consen  545 DK---VGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATL  585 (587)
T ss_pred             hH---HHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHh
Confidence            21   1112223334578877763      33444555554443

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=85.87  E-value=4  Score=32.01  Aligned_cols=91  Identities=9%  Similarity=-0.029  Sum_probs=50.2

Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132           26 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        26 ~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      .+..++..|.+|=|=|+.-+-|-+.-     .+.... ..+|-+||.||+||.+.. ....-++.+..+....++..+..
T Consensus        40 i~~~l~~~D~iiEvrDaRiPLssrn~-----~~~~~~-~~k~riiVlNK~DLad~~-~~k~~iq~~~~~~~~~~~~~~c~  112 (335)
T KOG2485|consen   40 IQNRLPLVDCIIEVRDARIPLSSRNE-----LFQDFL-PPKPRIIVLNKMDLADPK-EQKKIIQYLEWQNLESYIKLDCN  112 (335)
T ss_pred             HHhhcccccEEEEeeccccCCccccH-----HHHHhc-CCCceEEEEecccccCch-hhhHHHHHHHhhcccchhhhhhh
Confidence            45567889999999999876443211     122222 357889999999995532 22333444444433334444333


Q ss_pred             --CCCCHHHHHHHHHHHHHH
Q 031132          106 --TAQNVEEAFIKTAATIYK  123 (165)
Q Consensus       106 --~~~~i~~l~~~l~~~i~~  123 (165)
                        ...++..++..+-....+
T Consensus       113 ~~~~~~v~~l~~il~~~~~~  132 (335)
T KOG2485|consen  113 KDCNKQVSPLLKILTILSEE  132 (335)
T ss_pred             hhhhhccccHHHHHHHHHHH
Confidence              333355555544444443

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=85.79  E-value=4.1  Score=29.35  Aligned_cols=67  Identities=18%  Similarity=0.115  Sum_probs=41.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      .+-+.|.|++...... ......+.+|.+|+|.++.. .+...+...+..+...  ....+-+|.||.+..
T Consensus       127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~--~~~~~gvVlN~~~~~  193 (204)
T TIGR01007       127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQT--GSNFLGVVLNKVDIS  193 (204)
T ss_pred             cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhC--CCCEEEEEEeCcccc
Confidence            4567899998632211 12335567899999999854 3345555555555433  223466789999864

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=85.79  E-value=3.2  Score=32.68  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~--------~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +-..+.+|.|.-.=.+....+..        .-|++|-|+|+.+-..... +..   .+..+.  ..-=+|++||.|+..
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~---~~~~Qi--a~AD~ivlNK~Dlv~  159 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE---LAEDQL--AFADVIVLNKTDLVD  159 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHH---HHHHHH--HhCcEEEEecccCCC
Confidence            44567888887543233222222        3588999999987433222 222   222221  223467889999965


Q ss_pred             CCCCCHHHHHHHHHHc--CCeEEEecC
Q 031132           80 RRAVSTEEGEQFAKEH--GLIFMEASA  104 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~--~~~~~~vSa  104 (165)
                      ...  .........++  ..++++++.
T Consensus       160 ~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         160 AEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             HHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            442  23333333333  466888776

>PRK10818 cell division inhibitor MinD; Provisional

Probab=85.39  E-value=6.9  Score=29.49  Aligned_cols=67  Identities=9%  Similarity=0.006  Sum_probs=43.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----C--CCCeEEEEeeCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA----N--ANMTIMLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~----~--~~~p~ivv~nK~Dl   77 (165)
                      .+.+.+.|+++.-...  ....+..+|.++++++++. .++..+..++..+....    +  .+....++.|..+.
T Consensus       113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~  185 (270)
T PRK10818        113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (270)
T ss_pred             CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence            4678999998765432  2334678999999999864 44555555555554221    1  12345678898875

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=84.96  E-value=4.2  Score=30.04  Aligned_cols=64  Identities=11%  Similarity=-0.007  Sum_probs=40.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl   77 (165)
                      .+.+.++|+++....  .....+..+|.+|++++++- .++..+......+. .  .+.+ ..+++|+.+-
T Consensus       108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~-~--~~~~~~~vv~N~~~~  172 (251)
T TIGR01969       108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAE-K--LGTAILGVVLNRVTR  172 (251)
T ss_pred             hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHH-h--cCCceEEEEEECCCc
Confidence            467889999976542  23344568999999999864 34444433333222 2  2344 5688999985

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=84.87  E-value=7.9  Score=28.99  Aligned_cols=102  Identities=9%  Similarity=0.125  Sum_probs=59.5

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      +.|.|.|+.|...  .+....+..+|.||+=.-.+..+.  -.....|+..+.+.....+|.-|+.|+..-. .......
T Consensus        84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~-~~~~~~~  160 (231)
T PF07015_consen   84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAA-RLTRAQR  160 (231)
T ss_pred             CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcc-hhhHHHH
Confidence            5688999988653  223445667999998877664322  2233345555544444678999999998732 1111111


Q ss_pred             HHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 031132           87 EGEQFAKEHGLIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~  115 (165)
                      ....+..  ++|++.+.-....-+.++|.
T Consensus       161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  161 IISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHh--cCCccccccccHHHHHHHHH
Confidence            2222222  58888777665555555554

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=84.73  E-value=20  Score=29.31  Aligned_cols=105  Identities=17%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             EEEEEEeCCCchhhh----hhhHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            9 IKLQIWDTAGQESFR----SITRSYYR---GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~----~~~~~~~~---~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+.|.||+|.....    .....++.   ...-+++|++++..  ...+...+..+...   + +--++.||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            468899999985332    22233333   33567888888654  23333333333211   1 2357789999532  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFIKTAATIYKKI  125 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~l~~~l~~~i~~~~  125 (165)
                        ..-.+..++...++|+.+++  +|+++ +++...=-+.+.++.
T Consensus       372 --~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~a~~~~l~~~l  412 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLT--NGQRVPDDIKVANPEELVRLL  412 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHH
Confidence              22245666777888866664  46665 455444333444433

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=83.62  E-value=3.1  Score=29.29  Aligned_cols=32  Identities=25%  Similarity=0.075  Sum_probs=22.0

Q ss_pred             HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 031132           87 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      +........+++++.+|+.++++++++...+.
T Consensus         3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~   34 (161)
T PF03193_consen    3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLK   34 (161)
T ss_dssp             HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc
Confidence            34455667788888888888888888776553

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=83.55  E-value=12  Score=28.16  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=39.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTI-MLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~-ivv~nK~Dl   77 (165)
                      .+-+.+.||+|.-..... ...+..||.+|+++.++ ..++..+...+..+.... ..+.++ .+|.|+.+.
T Consensus       115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~  184 (268)
T TIGR01281       115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA  184 (268)
T ss_pred             cCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence            467889999775322221 12367899999988663 344544444444443322 234543 577899874

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=83.08  E-value=15  Score=26.57  Aligned_cols=92  Identities=23%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCchhhhh----hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~----~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +.+.|.||+|......    .+..+++  ..+-+++|++++....  .+..... +....  + +-=++.||.|-..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~-~~~~~--~-~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALA-FYEAF--G-IDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHH-HHHHS--S-TCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHH-Hhhcc--c-CceEEEEeecCCC---
Confidence            4578999999754321    1112211  5788999999987542  2222222 22221  2 2345689999522   


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEE  112 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  112 (165)
                       ..-....++...+.|+-.++  +|+++++
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~D  181 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYIT--TGQRVDD  181 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred             -CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence             23445666777889976664  3555533

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.68  E-value=9.8  Score=24.07  Aligned_cols=20  Identities=15%  Similarity=0.066  Sum_probs=10.3

Q ss_pred             hHhhhcCCcEEEEEEeCCCh
Q 031132           26 TRSYYRGAAGALLVYDITRR   45 (165)
Q Consensus        26 ~~~~~~~ad~vi~v~D~~~~   45 (165)
                      ++..++.+|+||++.|.-+-
T Consensus        42 l~~~i~~aD~VIv~t~~vsH   61 (97)
T PF10087_consen   42 LPSKIKKADLVIVFTDYVSH   61 (97)
T ss_pred             HHHhcCCCCEEEEEeCCcCh
Confidence            44445555555555555443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=81.73  E-value=17  Score=29.11  Aligned_cols=99  Identities=11%  Similarity=0.092  Sum_probs=53.8

Q ss_pred             CCEEEEEEEEeCCCchh--------------hhhhhHhhhc--------------CCcEEEEEEeCCChhhHHHHHHHHH
Q 031132            5 DNKPIKLQIWDTAGQES--------------FRSITRSYYR--------------GAAGALLVYDITRRETFNHLASWLE   56 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~--------------~ad~vi~v~D~~~~~s~~~~~~~~~   56 (165)
                      +|..+.+.+.||+|.-+              .......|+.              +.++++|.+.++...--..-...+.
T Consensus        78 ~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk  157 (373)
T COG5019          78 DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMK  157 (373)
T ss_pred             CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHH
Confidence            56778889999999521              0111112211              4699999999775321111112334


Q ss_pred             HHHHhcCCCCeEEEEeeCCCCCCCCCC--CHHHHHHHHHHcCCeEEEecCCCCCC
Q 031132           57 DARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEASAKTAQN  109 (165)
Q Consensus        57 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa~~~~~  109 (165)
                      .+...    +-+|=|+-|+|.....++  ....+.+.....++++|.  ..+.+.
T Consensus       158 ~ls~~----vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~  206 (373)
T COG5019         158 RLSKR----VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD--PYDPED  206 (373)
T ss_pred             HHhcc----cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC--CCCccc
Confidence            44433    345556689997432221  223444556667888774  344444

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=81.57  E-value=12  Score=28.61  Aligned_cols=107  Identities=15%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             eCCEEEEEEEEeCCCchhh---hhh-----------hHhhhc--------------CCcEEEEEEeCCChhhHHHHH-HH
Q 031132            4 IDNKPIKLQIWDTAGQESF---RSI-----------TRSYYR--------------GAAGALLVYDITRRETFNHLA-SW   54 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~---~~~-----------~~~~~~--------------~ad~vi~v~D~~~~~s~~~~~-~~   54 (165)
                      =+|.+..+.+.||+|.-++   ...           .++|++              ..+++++.+.++-. ++..+. ..
T Consensus        99 E~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDief  177 (336)
T KOG1547|consen   99 EKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEF  177 (336)
T ss_pred             ecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHH
Confidence            3567778899999995221   111           122222              36888888887642 222221 12


Q ss_pred             HHHHHHhcCCCCeEEEEeeCCCCC--CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 031132           55 LEDARQHANANMTIMLIGNKCDLA--HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        55 ~~~i~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~  115 (165)
                      ++.+...    +-++=|+-|.|-.  +++..-...++.-...+++.+|+--+.+.+.=+..++
T Consensus       178 lkrLt~v----vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN  236 (336)
T KOG1547|consen  178 LKRLTEV----VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN  236 (336)
T ss_pred             HHHHhhh----heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence            2333322    3455566789842  1221222334444556677777665554433333333

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=81.23  E-value=11  Score=31.06  Aligned_cols=68  Identities=12%  Similarity=0.207  Sum_probs=41.6

Q ss_pred             CcEEEEEEeCCC----hhhHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132           33 AAGALLVYDITR----RETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        33 ad~vi~v~D~~~----~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      .-|+++.-|.+-    ++++.++.. .+..+..   .++|+++++|-.+=  ....+......+..+++.+++.+++.
T Consensus       146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~  218 (492)
T PF09547_consen  146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCE  218 (492)
T ss_pred             ceeEEEecCCCccCCChHHHHHHHHHHHHHHHH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehH
Confidence            356777777653    233433333 3333333   47999999998873  22234555666777888888887655

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-58
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-56
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		3e-44
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		6e-44
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		7e-41
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-39
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		7e-37
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-36
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-36
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-34
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-34
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-34
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-34
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-34
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-34
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		8e-34
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		9e-34
4fmc_B	171	Espg-Rab1 Complex Length = 171		9e-34
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		9e-34
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		9e-34
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-33
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-33
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-33
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-33
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-32
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-32
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-32
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-32
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		7e-32
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-31
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-31
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-31
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-31
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-30
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-30
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-30
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-30
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-30
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-30
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-30
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-30
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		7e-30
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		7e-30
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-29
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-29
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-29
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		7e-29
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		9e-29
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-28
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-28
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-28
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-28
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-28
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-28
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-28
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-28
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-28
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-28
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-28
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-28
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-28
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		6e-28
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		8e-28
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-27
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-27
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-27
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-27
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-27
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-27
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		7e-27
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		8e-27
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-26
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-25
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-25
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-25
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-24
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-24
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-23
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-22
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-21
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-21
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-21
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-21
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-20
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-20
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		3e-20
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-20
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-20
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		4e-20
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-19
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-19
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-18
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-18
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-18
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		5e-18
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-17
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-17
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		5e-17
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		5e-17
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-17
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-17
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		6e-17
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		7e-17
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-16
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-16
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-16
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		5e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-16
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		5e-16
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		9e-16
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-15
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-15
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-15
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-15
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-15
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-15
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		4e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		5e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-15
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		8e-15
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-14
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-14
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-14
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-14
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-14
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-14
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		5e-14
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-14
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-14
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		6e-14
1byu_A	216	Canine Gdp-Ran Length = 216		7e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		7e-14
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		7e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-14
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-14
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		8e-14
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		8e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		8e-14
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-13
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-13
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-13
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-13
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-13
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		3e-13
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-13
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-13
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		5e-13
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		7e-13
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-12
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-12
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-12
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-12
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-12
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-11
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-11
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-11
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-11
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		4e-11
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-11
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		4e-11
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-11
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		5e-11
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		5e-11
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		5e-11
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		5e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-11
1mh1_A	186	Small G-Protein Length = 186		8e-11
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		8e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-10
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-10
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-10
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-10
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-10
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-10
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-10
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-10
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-10
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-10
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-10
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-10
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-10
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-10
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-10
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-10
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-10
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-10
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-09
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-09
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-09
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-09
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-09
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-09
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-09
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-09
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		6e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		7e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		7e-09
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		7e-09
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		1e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-08
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-08
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-08
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		4e-08
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-08
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-08
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-08
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-08
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		4e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		8e-08
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-07
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		6e-07
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-07
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		7e-07
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		8e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		8e-07
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		9e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		4e-06
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		3e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		4e-05
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		4e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		7e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		7e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		8e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		8e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		8e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		9e-05
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-04
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-04
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-04
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-04
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-04
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-04
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-04
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-04
2kb0_A	178	Cdc42(T35a) Length = 178		2e-04
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-04
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-04
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-04
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-04
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-04
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-04
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-04
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-04
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-04
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-04
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-04
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-04
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		3e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		3e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		3e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		3e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		4e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		4e-04
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		5e-04
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		6e-04
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		6e-04
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		7e-04
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-04

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  219 bits (559), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/130 (80%), Positives = 112/130 (86%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           M+ ID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQ
Sbjct: 62  MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H+++NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct: 122 HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 181
Query: 121 IYKKIQDGVF 130
           IY+KIQ G+F
Sbjct: 182 IYRKIQQGLF 191

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/124 (82%), Positives = 108/124 (87%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           MITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQ
Sbjct: 51  MITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 110
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct: 111 HSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 170
Query: 121 IYKK 124
           IY+K
Sbjct: 171 IYEK 174

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  173 bits (439), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 80/126 (63%), Positives = 101/126 (80%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  + IKLQIWDTAGQ  FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR 
Sbjct: 71  IIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 130
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             N N  I+LIGNK DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  
Sbjct: 131 LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 190
Query: 121 IYKKIQ 126
           IY+ IQ
Sbjct: 191 IYQNIQ 196

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  172 bits (437), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 100/123 (81%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR 
Sbjct: 56  IIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 115
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             N N  I+LIGNK DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  
Sbjct: 116 LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175
Query: 121 IYK 123
           IY+
Sbjct: 176 IYQ 178

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  162 bits (411), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 97/131 (74%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           ++ +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LA+WL DAR 
Sbjct: 66  VVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART 125
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ ++L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF+K A T
Sbjct: 126 LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 185
Query: 121 IYKKIQDGVFD 131
           I  KI  G  D
Sbjct: 186 ILNKIDSGELD 196

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  157 bits (396), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 96/131 (73%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR 
Sbjct: 51  IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 110
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  
Sbjct: 111 LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK 170
Query: 121 IYKKIQDGVFD 131
           I  KI+ G  D
Sbjct: 171 ILNKIESGELD 181

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  149 bits (376), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 92/124 (74%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR 
Sbjct: 52  IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 111
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E SA T ++VEEAF++ A  
Sbjct: 112 LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARK 171
Query: 121 IYKK 124
           I  K
Sbjct: 172 ILNK 175

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  147 bits (370), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 94/125 (75%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I+++NK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T R++F+++  W+++  ++
Sbjct: 51  ISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRY 110
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A  N+  +L+GNKCDL  +R V+++EG + A  HG+ F+E SAK A NVE+AF   A  I
Sbjct: 111 AMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
Query: 122 YKKIQ 126
            K++Q
Sbjct: 171 KKRVQ 175

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  146 bits (369), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 91/124 (73%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  K +KLQIWDTAG E FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR 
Sbjct: 49  IINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 108
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E SA T ++VEEAF++ A  
Sbjct: 109 LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARK 168
Query: 121 IYKK 124
           I  K
Sbjct: 169 ILNK 172

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 87/122 (71%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R H
Sbjct: 62  IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 121
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ IML+GNK DL H RAV T+E   FA+++GL F+E SA  + NVE AF      I
Sbjct: 122 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
Query: 122 YK 123
           Y+
Sbjct: 182 YR 183

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 86/122 (70%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IK QIWDTAGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R H
Sbjct: 47  IQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 106
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ IML+GNK DL H RAV T+E   FA+++ L F+E SA  + NVEEAF      I
Sbjct: 107 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
Query: 122 YK 123
           Y+
Sbjct: 167 YR 168

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 86/121 (71%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R H
Sbjct: 71  IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 130
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ IML+GNK DL H RAV T+E   FA+++GL F+E SA  + NVE AF      I
Sbjct: 131 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
Query: 122 Y 122
           Y
Sbjct: 191 Y 191

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 96/135 (71%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ K IK QIWDTAGQE +R+IT +YYRGA GAL+VYDI++  ++ +   WL + R++
Sbjct: 55  LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN 114
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ + LIGNK DLAH RAV TEE + FA+E+ L+F E SA  ++NV++AF +   TI
Sbjct: 115 ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174
Query: 122 YKKIQDGVFDVSNES 136
           Y+K+     D+ + S
Sbjct: 175 YQKVSKHQMDLGDSS 189

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 91/127 (71%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 58  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I
Sbjct: 118 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
Query: 122 YKKIQDG 128
            K++  G
Sbjct: 178 KKRMGPG 184

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  139 bits (350), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 58  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I
Sbjct: 118 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
Query: 122 YKKI 125
            K++
Sbjct: 178 KKRM 181

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  139 bits (350), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 86/122 (70%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R H
Sbjct: 50  IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 109
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ IML+GNK DL H RAV T+E   FA+++GL F+E SA  + NVE AF      I
Sbjct: 110 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
Query: 122 YK 123
           Y+
Sbjct: 170 YR 171

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  139 bits (349), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 41  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 100
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I
Sbjct: 101 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
Query: 122 YKKI 125
            K++
Sbjct: 161 KKRM 164

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  139 bits (349), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 48  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I
Sbjct: 108 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
Query: 122 YKKI 125
            K++
Sbjct: 168 KKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  139 bits (349), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 67  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 126
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I
Sbjct: 127 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
Query: 122 YKKI 125
            K++
Sbjct: 187 KKRM 190

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  139 bits (349), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 90/124 (72%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 48  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I
Sbjct: 108 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
Query: 122 YKKI 125
            K++
Sbjct: 168 KKRM 171

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 89/125 (71%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +H
Sbjct: 48  IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A  I
Sbjct: 108 ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
Query: 122 YKKIQ 126
             K+ 
Sbjct: 168 KAKMD 172

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 89/125 (71%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +H
Sbjct: 50  IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 109
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A  I
Sbjct: 110 ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
Query: 122 YKKIQ 126
             K+ 
Sbjct: 170 KAKMD 174

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R H
Sbjct: 71  IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 130
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ IML+GNK DL H RAV T+E   FA+++GL F+E SA  + NVE AF      I
Sbjct: 131 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
Query: 122 Y 122
           Y
Sbjct: 191 Y 191

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 88/123 (71%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 75  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 134
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F   AA I
Sbjct: 135 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
Query: 122 YKK 124
            K+
Sbjct: 195 KKR 197

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 84/121 (69%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R H
Sbjct: 53  IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 112
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ I L+GNK DL H RAV T+E   FA+++GL F+E SA  + NVE AF      I
Sbjct: 113 ADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
Query: 122 Y 122
           Y
Sbjct: 173 Y 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 84/121 (69%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R H
Sbjct: 47  IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 106
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A++N+ I L+GNK DL H RAV T+E   FA+++GL F+E SA  + NVE AF      I
Sbjct: 107 ADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
Query: 122 Y 122
           Y
Sbjct: 167 Y 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 89/124 (71%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 50  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 109
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+G KCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I
Sbjct: 110 ASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
Query: 122 YKKI 125
            K++
Sbjct: 170 KKRM 173

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 85/118 (72%)
Query: 5   DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA 64
           +NK IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT++ +F ++  WL++ R +A++
Sbjct: 53  NNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS 112
Query: 65  NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122
           N+ I+L+GNK DL H R ++  +  Q+AK+  L F+E SA  A NVE AF +    IY
Sbjct: 113 NIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY 170

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  132 bits (333), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 87/124 (70%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           ++ +D   +KLQ+WDTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  +
Sbjct: 52  VLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE 111
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A  ++ +ML+GNK D AH R V  E+GE+ AKE+GL FME SAKT  NV+ AF   A  
Sbjct: 112 YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 171
Query: 121 IYKK 124
           + ++
Sbjct: 172 LKRR 175

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++
Sbjct: 51  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNK DL  ++ V     ++FA   G+ F+E SAK A NVE+AF+  AA I
Sbjct: 111 ASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
Query: 122 YKKI 125
            K++
Sbjct: 171 KKRM 174

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++
Sbjct: 51  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+  +L+GNK DL  ++ V     ++FA   G+ F+E SAK A NVE+AF+  AA I
Sbjct: 111 ASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
Query: 122 YKKI 125
            K++
Sbjct: 171 KKRM 174

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 91/132 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I ++NK IK QIWDTAG E +R+IT +YYRGA GAL+VYDI++  ++ +   WL + R++
Sbjct: 52  IEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELREN 111
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ + LIGNK DLAH RAV T+E + FA E+ ++F E SA  + NV++AF +    I
Sbjct: 112 ADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171
Query: 122 YKKIQDGVFDVS 133
           ++ +     D+S
Sbjct: 172 FQMVSKHQVDLS 183

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ K +KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +H
Sbjct: 45  VDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH 104
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           AN    ++L+GNK D+   R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I
Sbjct: 105 ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Query: 122 YKKI 125
            +KI
Sbjct: 164 QEKI 167

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ K +KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +H
Sbjct: 45  VDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEH 104
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           AN    ++L+GNK D    R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I
Sbjct: 105 ANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Query: 122 YKKI 125
            +KI
Sbjct: 164 QEKI 167

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ K +KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +H
Sbjct: 62  VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           AN    ++L+GNK D+   R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I
Sbjct: 122 ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
Query: 122 YKKI 125
            +KI
Sbjct: 181 QEKI 184

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ K +KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +H
Sbjct: 49  VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 108
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           AN    ++L+GNK D+   R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I
Sbjct: 109 ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167
Query: 122 YKKI 125
            +KI
Sbjct: 168 QEKI 171

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I  K +KLQIWDTAGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++
Sbjct: 71  LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY 130
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAAT 120
           A +N+  +LIGNK DL+  R VS  E +  A+ + ++  +E SAK + NVEEAF++ A  
Sbjct: 131 AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE 190
Query: 121 I 121
           +
Sbjct: 191 L 191

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ K +KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +H
Sbjct: 45  VDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEH 104
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           AN    ++L+GNK D    R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I
Sbjct: 105 ANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Query: 122 YKKI 125
            +KI
Sbjct: 164 QEKI 167

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 84/120 (70%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++
Sbjct: 63  VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 122
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A + +  +L+GNKCDL  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  I
Sbjct: 123 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 84/120 (70%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++
Sbjct: 50  VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 109
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A + +  +L+GNKCDL  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  I
Sbjct: 110 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 84/120 (70%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++
Sbjct: 50  VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 109
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A + +  +L+GNKCDL  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  I
Sbjct: 110 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +    +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   H
Sbjct: 67  VMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH 126
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A A + +ML+GNK DL+  R V TEE   FA+ +GL+F+E SA  + NVE AF      I
Sbjct: 127 AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
Query: 122 YKKI 125
           + K+
Sbjct: 187 FAKV 190

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +    +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   H
Sbjct: 52  VMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH 111
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A A + +ML+GNK DL+  R V TEE   FA+ +GL+F+E SA  + NVE AF      I
Sbjct: 112 AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171
Query: 122 YKKI 125
           + K+
Sbjct: 172 FAKV 175

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 82/118 (69%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ++++ I+LQ+WDTAGQE FRS+  SY R +A A++VYDIT   +F     W++D R    
Sbjct: 50  LEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           +++ IML+GNK DLA +R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 83/118 (70%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ++++ ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F   + W++D R    
Sbjct: 46  LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG 105
Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           +++ IML+GNK DLA +R ++ EEGEQ AKE  ++F+E SAKT  NV++ F + A+ +
Sbjct: 106 SDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 84/118 (71%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ++++ ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+  + W++D R    
Sbjct: 58  LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG 117
Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           +++ IML+GNK DL+ +R VSTEEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 118 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +  K I+LQIWDTAGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++
Sbjct: 68  VELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY 127
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAAT 120
           A+ +  ++L+GNK D    R ++ ++GE+FA++  G+ F EASAK   NV+E F+K    
Sbjct: 128 ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 187
Query: 121 IYKKI 125
           I KK+
Sbjct: 188 ILKKM 192

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  122 bits (306), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 80/120 (66%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ + +KLQIWDTAGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+
Sbjct: 68  VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 127
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+  +  +L+GNK DLA RR VS +  E+F++   + ++E SAK + NVE+ F+  A  +
Sbjct: 128 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 48  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
            K
Sbjct: 168 PK 169

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 49  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 108
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  +
Sbjct: 109 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
Query: 122 YK 123
            K
Sbjct: 169 PK 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 48  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
            K
Sbjct: 168 PK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 48  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
            K
Sbjct: 168 PK 169

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 48  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
            K
Sbjct: 168 PK 169

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 48  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
            K
Sbjct: 168 PK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 48  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  +
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Query: 122 YK 123
            K
Sbjct: 168 PK 169

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT +ETF    +W+++ ++ 
Sbjct: 50  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQ 109
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ ++ I L GNK DLA++R V  EE + +A ++ L+FME SAKTA NV + F+  A  +
Sbjct: 110 ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
Query: 122 YK 123
            K
Sbjct: 170 PK 171

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 81/118 (68%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ++++ ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F     W++D R    
Sbjct: 45  LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 104
Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           +++ IML+GNK DLA +R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 105 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 81/118 (68%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ++++ I+LQ+WDTAG E FRS+  SY R +A A++VYDIT   +F     W++D R    
Sbjct: 57  LEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116
Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           +++ IML+GNK DLA +R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 80/117 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ 
Sbjct: 47  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 106
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           A+ N+ I L GNK DLA +RAV  +E + +A ++ L+FME SAKTA NV E F+  A
Sbjct: 107 ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 80/117 (68%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ 
Sbjct: 45  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 104
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           A+ N+ I L GNK DLA +RAV  +E + +A ++ L+FME SAKTA NV E F+  A
Sbjct: 105 ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 5   DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA 64
           ++K IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  
Sbjct: 50  NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 109
Query: 65  NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124
           N  ++L+GNKCD+   R VS+E G Q A   G  F EASAK   NV++ F +    I +K
Sbjct: 110 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 79/121 (65%)
Query: 7   KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 66
           K +KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N 
Sbjct: 70  KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA 129
Query: 67  TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126
            ++L+GNKCD+   R V TE+G+  A++ G  F EASAK   +V +AF +    I  K+ 
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
Query: 127 D 127
           D
Sbjct: 190 D 190

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 82/122 (67%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAG E + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 47  VCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 106
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  +
Sbjct: 107 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
Query: 122 YK 123
            K
Sbjct: 167 PK 168

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 78/117 (66%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +++  +K +IWDTAGQE + S+   YYRGAA A++V+D+T + +F     W+++ +  
Sbjct: 54  LAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ 113
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
            N NM + L GNK DL   R V+ E+ + +A+E+GL FME SAKTA NV+E F + A
Sbjct: 114 GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 81/122 (66%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ 
Sbjct: 49  VCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 108
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+ N+ I L GNK DLA++RAV  +E + +A ++ L+F E SAKT+ NV E F   A  +
Sbjct: 109 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
Query: 122 YK 123
            K
Sbjct: 169 PK 170

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ++++ ++LQ+WDTAG E FRS+  SY R +  A++VYDIT   +F     W++D R    
Sbjct: 50  LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           +++ IML+GNK DLA +R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ++++ ++LQ+WDTAG E FRS+  SY R +  A++VYDIT   +F     W++D R    
Sbjct: 60  LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119
Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           +++ IML+GNK DLA +R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 79/117 (67%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D+  +K +IWDTAG E + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ 
Sbjct: 47  VCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 106
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           A+ N+ I L GNK DLA +RAV  +E + +A ++ L+FME SAKTA NV E F+  A
Sbjct: 107 ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 77/120 (64%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D  P++LQ+WDTAGQE FRS+  SY R +A A++VYDIT R++F +   W++D    
Sbjct: 43  LYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 102
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
              ++ I L+GNK DL   R V+ EEG Q A+E+   F E SAK   N++  F KTA+ +
Sbjct: 103 RGKDVIIALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 78/122 (63%)
Query: 6   NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 65
           +K IKLQIWDTAGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N
Sbjct: 68  DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN 127
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
             ++L+GNKCDL   R V  E+G + A + G  F EASAK   NV++ F +    I +K+
Sbjct: 128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187
Query: 126 QD 127
            +
Sbjct: 188 NE 189

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 4/138 (2%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I++D    KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +
Sbjct: 57  ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 116
Query: 62  ANANMTI-MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
              N  +  L+GNK D    R V   EG +FA++H  +F+EASAKT   V+ AF +    
Sbjct: 117 CTRNDIVNXLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEK 175
Query: 121 IYKKIQDGVFDVSNESYG 138
           I +    G+++  N++ G
Sbjct: 176 IIQ--TPGLWESENQNSG 191

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 75/120 (62%)
Query: 5   DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA 64
           ++K IKLQIWDTAG E +R+IT +YYRGA G +L YDIT  E+FN +  W    + ++  
Sbjct: 53  NDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWD 112
Query: 65  NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124
           N  ++L+GNKCD    R VS+E G Q A   G  F EASAK   NV++ F +    I +K
Sbjct: 113 NAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 72/112 (64%)
Query: 10  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 69
           K  IWDTAGQE FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH   ++ + 
Sbjct: 55  KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 114
Query: 70  LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           + GNKCDL   R V   + + +A     IF+E SAK A N+ E FI+ +  I
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           +TI+   +K +IWDTAGQE F S+   YYR A  AL+VYD+T+ ++F     W+++  + 
Sbjct: 45  VTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ 104
Query: 62  ANANMTIMLIGNKCDLAH---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           A+ ++ I L+GNK D       R V+ EEGE+ A+E GL+F E SAKT +NV + F+
Sbjct: 105 ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 71/112 (63%)
Query: 10  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 69
           K  IWDTAG E FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH   ++ + 
Sbjct: 56  KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115
Query: 70  LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           + GNKCDL   R V   + + +A     IF+E SAK A N+ E FI+ +  I
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 72/105 (68%)
Query: 10  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 69
           K  IWDTAGQE F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + 
Sbjct: 73  KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 70  LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           + GNKCDL+  R V  ++ +++A+  G I +E SAK A N+EE F
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ + +KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+
Sbjct: 51  VEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN 110
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            + ++  +L+GNK D   R+ V TE+  +FA + G+   E SAK   NVEE F
Sbjct: 111 CD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 61/77 (79%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++
Sbjct: 40  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 99
Query: 62  ANANMTIMLIGNKCDLA 78
           A+ N+  +L+GNKCDL 
Sbjct: 100 ASENVNKLLVGNKCDLT 116

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
           + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+  ++  ANA   N
Sbjct: 84  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYCEN 141
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
             I+LIGNK DL  +R V+  +  + A ++G+ + E SA T QNVE+A       I K++
Sbjct: 142 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
Query: 126 QDGV 129
           +  V
Sbjct: 202 EQCV 205

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D +   LQ+WDTAGQE FRSI +SY+R A G LL+YD+T  ++F ++  W++     
Sbjct: 70  LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA 129
Query: 62  ANANMTIMLIGNKCDLAH------RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           A+  + IML+GNK D+        ++ V    GE+ A  +G +F E SAK   N+ EA +
Sbjct: 130 AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVL 189
Query: 116 KTAATIYKK 124
             A  + K+
Sbjct: 190 HLAREVKKR 198

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 2   ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           + ID + IK+Q+WDTAGQE FR S+ + YYR     + VYD+T   +F+ L +W+E+ +Q
Sbjct: 62  VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ 121
Query: 61  HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN---VEEAFIK 116
           H  AN +  +L+GNKCDL     V T+  ++FA  H +   E SAK   +   VE  F+ 
Sbjct: 122 HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 181
Query: 117 TA 118
            A
Sbjct: 182 LA 183

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 80/121 (66%), Gaps = 5/121 (4%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
           + LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+  ++  ANA   N
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYCEN 127
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
             I+LIGNK DL  +R V+  +  + A+++G+ + E SA T QNVE++       I K++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
Query: 126 Q 126
           +
Sbjct: 188 E 188

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
           + LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+  ++  ANA   N
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYCEN 127
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
             I+LIGNK DL  +R V+  +  + A+++G+ + E SA T QNVE++       I K++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
Query: 126 QDGV 129
           +  V
Sbjct: 188 EKCV 191

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMT 67
           I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + N  
Sbjct: 70  IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD 129
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 127
           I+L GNK DL  +RAV  EE  + A+++G+ + E SA    N+  A       I K+++ 
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
Query: 128 GV 129
            V
Sbjct: 190 SV 191

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 2   ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           + ID + IK+Q+WDTAGQE FR S+ + YYR     + VYD T   +F+ L +W+E+ +Q
Sbjct: 71  VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQ 130
Query: 61  HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE--EAFIKT 117
           H  AN +  +L+GNKCDL     V T+  ++FA  H     E SAK   + +  EA   T
Sbjct: 131 HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXT 190
Query: 118 AA 119
            A
Sbjct: 191 LA 192

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I  K + L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+ 
Sbjct: 48  LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
               + + ++GNK DL   R VS +E E +A+  G      SAK  + +EE F+
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I  K + L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+ 
Sbjct: 62  LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 121
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
               + + ++GNK DL   R VS +E E +A+  G      SAK  + +EE F+
Sbjct: 122 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
           + LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W   ++  ANA   N
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWX--SQLQANAYCEN 127
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 113
             I+LIGNK DL  +R V+  +  + A+++G+ + E SA T QNVE++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I  K + L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+ 
Sbjct: 48  LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
               + + ++GNK DL   R VS +E E +A+  G      SAK  + +EE F+
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---N 65
           + LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W   ++  ANA   N
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWX--SQLQANAYCEN 127
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 113
             I+LIGNK DL  +R V+  +  + A+++G+ + E SA T QNVE++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQH 61
            ID++  +L I DTAGQE F ++   Y R   G LLV+ +T R +F  +  +     R  
Sbjct: 47  VIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK 106
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
                 ++LIGNK DL H+R V+ EEG+Q A++  + +MEASAK   NV++AF +    I
Sbjct: 107 DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
Query: 122 YK 123
            K
Sbjct: 167 RK 168

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
           IK  IWDTAGQE + SI   YYRGA  A++V+DI+   T +   +W+   +   ++N  I
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 69  MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125
           +L+ NK D  ++  V   E +++A+++ L+F++ SAKT  N++  F   A  IYK I
Sbjct: 151 ILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I ++++ ++L +WDTAGQE F +IT++YYRGA   +LV+  T RE+F  ++SW E     
Sbjct: 47  IQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 106
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
              ++   L+ NK DL     +  EE E  AK   L F   S K   NV E F
Sbjct: 107 V-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED---- 57
           + +D++ + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    
Sbjct: 50  VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           A      N   +++GNK DL +R+  +         ++ + + E SAK A NVE+AF
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW----LED 57
           + +D++ + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L SW    L  
Sbjct: 50  VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           A      N   +++GNK DL +R+  +         ++ + + E SAK A NVE+AF
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED---- 57
           + +D++ + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    
Sbjct: 50  VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           A      N   +++GNK D  +R+  +         ++ + + E SAK A NVE+AF
Sbjct: 110 ASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED---- 57
           + +D++ + +QIWDTAG E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    
Sbjct: 50  VMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           A      N   +++GNK DL +R+  +         ++ + + E SAK A NVE+AF
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 2   ITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +T+D +K   +Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   
Sbjct: 50  VTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 109
Query: 61  HANAN----MTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 114
           HAN N       +++GNK D    ++ VS +  ++ AK  G I     SAK A NV+ AF
Sbjct: 110 HANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQH 61
           ++D  P +L I DTAGQE F ++   Y R   G LLV+ I  R++FN +   + +  R  
Sbjct: 51  SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK 110
Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
              +  ++L+GNK DL  +R V   E   F   H + + EASAK   NV+EAF +    +
Sbjct: 111 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Query: 122 YK 123
            K
Sbjct: 171 RK 172

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D   + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L++W ++   +
Sbjct: 49  LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 108
Query: 62  ANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 114
           A+     +   +++GNK D++ R+ VSTEE + + +++G   + E SAK A NV  AF
Sbjct: 109 ADVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D   + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L++W ++   +
Sbjct: 51  LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 110
Query: 62  ANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 114
           A+     +   +++GNK D++ R+ VSTEE + + +++G   + E SAK A NV  AF
Sbjct: 111 ADVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R 
Sbjct: 59  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + N+  +L+GNK DL  +R VS EE +  A++  + ++E SAKT  NV++ F      
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178
Query: 121 IY-KKIQD 127
           I  +K++D
Sbjct: 179 IRARKMED 186

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R 
Sbjct: 47  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 106
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + N+  +L+GNK DL  +R VS EE +  A++  + ++E SAKT  NV++ F      
Sbjct: 107 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 121 IY-KKIQD 127
           I  +K++D
Sbjct: 167 IRARKMED 174

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R 
Sbjct: 55  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + N+  +L+GNK DL  +R VS EE +  A++  + ++E SAKT  NV++ F      
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174
Query: 121 IY-KKIQD 127
           I  +K++D
Sbjct: 175 IRARKMED 182

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D   + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L++W ++   +
Sbjct: 53  LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 112
Query: 62  ANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 114
           A+     +   +++GNK D+  R+ VSTEE + + K++G   + E SAK + NV  AF
Sbjct: 113 ADVKEPESFPFVILGNKTDIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R 
Sbjct: 45  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 104
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
             + N+  +L+GNK DL  +R VS EE +  A +  + ++E SAKT  NV++ F 
Sbjct: 105 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF 159

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +D + + LQIWDTAGQE F+S+   +YRGA   LL + +  R++F +L +W ++   +
Sbjct: 49  LEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYY 108
Query: 62  ANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 114
           A+     +   +++GNK D    R V+TEE + +  E+G   ++E SAK   NV  AF
Sbjct: 109 ADVKDPEHFPFVVLGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAG E + +I  +Y+R   G LLV+ IT  E+F   A + E   R 
Sbjct: 48  VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV 107
Query: 61  HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
            A  + + ++++GNK DL  RR V  EE    A+E G+ ++E SAKT  NV++ F     
Sbjct: 108 KAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 167
Query: 120 TIYKK 124
            I  K
Sbjct: 168 EIRTK 172

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAG E + +I  +Y+R   G LLV+ IT  E+F   A + E   R 
Sbjct: 44  VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV 103
Query: 61  HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
            A  + + ++++GNK DL  RR V  EE    A+E G+ ++E SAKT  NV++ F     
Sbjct: 104 KAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 163
Query: 120 TIYKK 124
            I  K
Sbjct: 164 EIRTK 168

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNH---LASWLEDA 58
           TID++ + ++I DTAGQE   +I R  + R   G +LVYDIT R +F     L + L++ 
Sbjct: 70  TIDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI 127
Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKT 117
           ++    N+T++L+GNK DL H R VSTEEGE+ A E    F E SA T + N+ E F + 
Sbjct: 128 KK--PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185
Query: 118 AATIYKK 124
              + ++
Sbjct: 186 CREVRRR 192

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAG E + +I  +Y+R   G L V+ IT  E+F   A + E   R 
Sbjct: 47  VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 106
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + N+  +L+GNK DL  +R VS EE +  A++  + ++E SAKT  NV++ F      
Sbjct: 107 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 121 IY-KKIQD 127
           I  +K++D
Sbjct: 167 IRARKMED 174

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 62  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV 121
Query: 62  ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            +++ + ++L+GNKCDL  R  V T++  + AK +G+ F+E SAKT Q VE+AF
Sbjct: 122 KDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            ++ ++ ++L+GNKCDL  R  V T++ +  A+ +G+ F+E SAKT Q V++AF      
Sbjct: 105 KDSEDVPMVLVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 121 IYK 123
           I K
Sbjct: 164 IRK 166

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 6   NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHA 62
           N  + LQIWD  GQ     +   Y  GA G LLVYDIT  ++F +L  W   ++   + +
Sbjct: 53  NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEES 112
Query: 63  NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
                + L+GNK DL H R +  E+  +F +E+G      SAKT  +V   F K AA I
Sbjct: 113 ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R 
Sbjct: 46  VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 105
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 114
               ++ ++L+GNKCDL   R V  E+G+  A++ +   F+E+SAK+  NV E F
Sbjct: 106 KDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R 
Sbjct: 44  VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 114
               ++ ++L+GNKCDL   R V  E+G+  A++ +   F+E+SAK+  NV E F
Sbjct: 104 KDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAG-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 51  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 110
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 111 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 49  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 109 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 49  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 109 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 50  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 109
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 110 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 162

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R 
Sbjct: 44  VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 114
               ++ ++L+GNKCDL   R V  E+G+  A++     F+E+SAK+  NV E F
Sbjct: 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R 
Sbjct: 44  VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 114
               ++ ++L+GNKCDL   R V  E+G+  A++     F+E+SAK+  NV E F
Sbjct: 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 62  VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 121
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            ++ ++ ++L+GNKCDL   R V T++ +  A+ +G+ F+E SAKT Q V++AF      
Sbjct: 122 KDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 180
Query: 121 IYK 123
           I K
Sbjct: 181 IRK 183

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GN+CDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNRCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DT GQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG+E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DT GQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE   ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 49  VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 109 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            ++ ++ ++L+GNK DL   R V T++ +  A+ +G+ F+E SAKT Q V++AF      
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 121 IYK 123
           I K
Sbjct: 164 IRK 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
           IK  +WDTAGQE    +   YY GA+GA+L +D+T R T  +LA W+++ +        I
Sbjct: 61  IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI 120
Query: 69  MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 128
           ++  NK D+ +R+ +S +   +  K     + E SAKTA N    F+   A I+    D 
Sbjct: 121 VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL-ARIFTGRPDL 179
Query: 129 VFDVSN 134
           +F VSN
Sbjct: 180 IF-VSN 184

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            +++ + ++L+GNKCDLA R  V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            ++ ++ ++L+GNK DL   R V T++ +  A+ +G+ F+E SAKT Q V++AF      
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 121 IYK 123
           I K
Sbjct: 164 IRK 166

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            ++ ++ ++L+GNK DL   R V T++ +  A+ +G+ F+E SAKT Q V++AF      
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 121 IYK 123
           I K
Sbjct: 164 IRK 166

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            +++ + ++L+GNK DLA R  V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 165

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+  A  +
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 51  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 109
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 110 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 155

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHA 62
           IDN+   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R   
Sbjct: 61  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 63  NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAF 114
             +  ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK    NV++ F
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHA 62
           IDN+   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R   
Sbjct: 61  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 63  NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAF 114
             +  ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK    NV++ F
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 121
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 122 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 167

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHA 62
           IDN+   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R   
Sbjct: 56  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 115
Query: 63  NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAF 114
             +  ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK    NV++ F
Sbjct: 116 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 168

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 121
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 122 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 167

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHA 62
           IDN+   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R   
Sbjct: 61  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 63  NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAF 114
             +  ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK    NV++ F
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE F  +   YY  A  A++ +D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           ++T+      L + DTAGQ+ +  +  S+  G  G +LVY +T   +F  + S  +   +
Sbjct: 64  IVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHE 123
Query: 61  -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
            H    + ++L+GNK DL+  R V   EG++ A+  G  FME+SA+  Q  +  F K   
Sbjct: 124 GHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQ 183
Query: 120 TI 121
            I
Sbjct: 184 EI 185

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQ 60
           + +D + + L +WDTAGQE +  +    YRGA   +L + +  + ++ N L  W+ + R+
Sbjct: 50  VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109
Query: 61  HANANMTIMLIGNKCDLA--------HRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVE 111
            A  N+ I+L+G K DL         H   +++ +GE+  K+ G   ++E S+KT QNV+
Sbjct: 110 FA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168
Query: 112 EAF 114
             F
Sbjct: 169 AVF 171

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAGQE +  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTA QE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            +++ + ++L+GNK DLA R  V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKXDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTA QE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 44  VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 62  ANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            +++ + ++L+GNK DLA R  V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 104 KDSDDVPMVLVGNKXDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 54  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 112
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 113 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 161

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 60  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 118
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 119 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 167

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + +D   + L +WDTAGQE +  +    YRGA   +L + +  + ++ ++A  W+ + R 
Sbjct: 47  VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 106
Query: 61  HANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHG-LIFMEASAKTAQN 109
           +A   + I+L+G K DL   +           ++T +GE+  K  G  I++E S+KT QN
Sbjct: 107 YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQN 165
Query: 110 VEEAF 114
           V+  F
Sbjct: 166 VKAVF 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 8   PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT 67
           PIK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 116
Query: 68  IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           I+L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 117 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQ 60
           I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R 
Sbjct: 44  IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV 103
Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
                + ++L+GNK DL   R VS+ EG   A+E G  FME SAK+   V+E F
Sbjct: 104 KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I+ D     LQI DT G   F ++ R         +LVY IT R++   L    E   +
Sbjct: 43  VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE 102
Query: 61  HAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
                 ++ IML+GNKCD +  R V + E E  A+     FME SAK   NV+E F
Sbjct: 103 IKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D   + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   WL + + 
Sbjct: 47  VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKH 106
Query: 61  HANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHGLI-FMEASAKTAQN 109
           +A   + I+L+G K DL   +          +++T +GE+  K  G + ++E S+KT QN
Sbjct: 107 YA-PGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQN 165
Query: 110 VEEAF 114
           V+  F
Sbjct: 166 VKAVF 170

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
           IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I
Sbjct: 53  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPI 111
Query: 69  MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           +L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 112 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA 159

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
           IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I
Sbjct: 54  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPI 112
Query: 69  MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           +L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 113 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA 160

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI 68
           IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I
Sbjct: 61  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 119
Query: 69  MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 115
           +L GNK D+  R+  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 120 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFL 164

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLED 57
           +IT++ +   LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +      L D
Sbjct: 46  LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 105
Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
                   + IML+GNK DL   R +S EEG+  A+     F+E+SAK  Q   + F
Sbjct: 106 MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LED 57
           +IT++ +   LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +      L D
Sbjct: 41  LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 100
Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
                   + IML+GNK DL   R +S EEG+  A+     F+E+SAK  Q   + F
Sbjct: 101 MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LED 57
           +IT++ +   LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +      L D
Sbjct: 46  LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 105
Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
                   + IML+GNK DL   R +S EEG+  A+     F+E+SAK  Q   + F
Sbjct: 106 MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LED 57
           +IT++ +   LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +      L D
Sbjct: 44  LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 103
Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
                   + IML+GNK DL   R +S EEG+  A+     F+E+SAK  Q   + F
Sbjct: 104 MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 50  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 109
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 110 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 169
Query: 109 NVEEAF 114
            V E F
Sbjct: 170 GVREVF 175

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
            V E F
Sbjct: 166 GVREVF 171

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
            V E F
Sbjct: 166 GVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 44  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 103
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 104 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163
Query: 109 NVEEAF 114
            V E F
Sbjct: 164 GVREVF 169

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
            V E F
Sbjct: 166 GVREVF 171

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 48  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 107
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 108 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
Query: 109 NVEEAF 114
            V E F
Sbjct: 168 GVREVF 173

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 44  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 103
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 104 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163
Query: 109 NVEEAF 114
            V E F
Sbjct: 164 GVREVF 169

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 49  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 108
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 109 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168
Query: 109 NVEEAF 114
            V E F
Sbjct: 169 GVREVF 174

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 48  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 107
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 108 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
Query: 109 NVEEAF 114
            V E F
Sbjct: 168 GVREVF 173

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
            V E F
Sbjct: 166 GVREVF 171

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 47  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 106
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 107 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166
Query: 109 NVEEAF 114
            V E F
Sbjct: 167 GVREVF 172

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 47  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 106
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 107 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166
Query: 109 NVEEAF 114
            V E F
Sbjct: 167 GVREVF 172

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 48  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 107
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 108 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
Query: 109 NVEEAF 114
            V E F
Sbjct: 168 GVREVF 173

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y     +L+ + +    +F ++ A W  + R 
Sbjct: 48  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 107
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 108 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 166
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 167 RGLKTVF 173

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y     +L+ + +    +F ++ A W  + R 
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 106 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 164
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 165 RGLKTVF 171

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y     +L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y     +L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I+ D     LQI DT G   F ++ R         +LV+ +T +++   L    +   Q
Sbjct: 48  VISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQ 107
Query: 61  HANA--NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
              +  ++ +ML+GNKCD   +R V T E +  A+E    FME SAK   NV+E F
Sbjct: 108 IKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 2   ITIDNKPIKLQIW--DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE--- 56
           +TI +  + ++++  DTAG + ++     Y+ G   A+LV+D++  E+F    +W E   
Sbjct: 64  VTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK 123
Query: 57  DARQHANANMTIMLIGNKCDLAHRR-AVSTEEGEQFAKEHGLIFMEASA-KTAQNVEEAF 114
            AR      +  +L+ NK DL  +R  V  +  + +A  + L F + SA    ++ +  F
Sbjct: 124 SARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPF 183
Query: 115 IKTAATIYKKIQDGV 129
           +  A T Y+  +D V
Sbjct: 184 LSIATTFYRNYEDKV 198

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + +  KP+ L IWDTAGQ+ +  +   +Y  A+  LL +D+T   +F+++ +       H
Sbjct: 75  LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH 134
Query: 62  ANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKTAQ 108
               + I+++G K DL   ++            V+   G++ A+  G + ++E SA+   
Sbjct: 135 FCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHD 194
Query: 109 NVEEAFIKTA 118
           NV   F + A
Sbjct: 195 NVHAVFQEAA 204

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 66  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V +EEG   A       ++E SAKT +
Sbjct: 126 FXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
Query: 109 NVEEAF 114
            V E F
Sbjct: 186 GVREVF 191

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 51  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 110
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 111 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 169
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 170 RGLKTVF 176

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 63  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 122
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 123 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 181
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 182 RGLKTVF 188

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 71  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 190 RGLKTVF 196

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 71  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 190 RGLKTVF 196

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 54  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 113
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 114 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 172
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 173 RGLKTVF 179

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 66  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V +EEG   A       ++E SAKT +
Sbjct: 126 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
Query: 109 NVEEAF 114
            V E F
Sbjct: 186 GVREVF 191

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAG E +  +    Y      L+ + I   ++  ++        +H
Sbjct: 49  IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 108
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V  EEG   A   G   +ME SAKT  
Sbjct: 109 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168
Query: 109 NVEEAF 114
            V E F
Sbjct: 169 GVREVF 174

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62  ANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQ 108
              N+ I+L+GNK DL    H R          V +EEG   A       ++E SAKT +
Sbjct: 106 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 165
Query: 109 NVEEAF 114
            V E F
Sbjct: 166 GVREVF 171

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAG E +  +    Y      L+ + +    +F+H+ A W  + R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 315 RGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAG E +  +    Y      L+ + +    +F+H+ A W  + R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 315 RGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAG E +  +    Y      L+ + +    +F+H+ A W  + R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 315 RGLKTVF 321

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + ++   + L +WDTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + + 
Sbjct: 49  VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH 108
Query: 61  HANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHG-LIFMEASAKTAQN 109
           +A   + I+L+G K DL   +           ++T +GE+  K  G   ++E S+K+ +N
Sbjct: 109 YA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167
Query: 110 VEEAF 114
           V+  F
Sbjct: 168 VKGVF 172

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K ++L +WDTAGQE +       Y      L+ + I   ++  ++        +H
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 105
Query: 62  ANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
              N+ I+L+GNK DL +            +  V   EG   A   G   +ME SAKT  
Sbjct: 106 FCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKD 165
Query: 109 NVEEAF 114
            V E F
Sbjct: 166 GVREVF 171

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAG E +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAG E +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDAR 59
           ++++D +P++LQ+ DTAGQ+ F  +    Y      LL + +    +F +++  W+ + R
Sbjct: 60  VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
Query: 60  QHANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKE-HGLIFMEASAKT 106
            H      I+L+G + DL               + V  E  +  A+E     ++E SA T
Sbjct: 120 CHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178
Query: 107 AQNVEEAF 114
            +N++E F
Sbjct: 179 QKNLKEVF 186

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAG E +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 47  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 106
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 107 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 165
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 166 RGLKTVF 172

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAG E +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 71  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 190 RGLKTVF 196

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   +  I+L+G K DL   +             ++  +G   A+E G + ++E SA T 
Sbjct: 104 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 45  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   +  I+L+G K DL   +             ++  +G   A+E G + ++E SA T 
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 164 RGLKTVF 170

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ A W  + R 
Sbjct: 45  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   +  I+L+G K DL   +             ++  +G   A+E G + ++E SA T 
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 164 RGLKTVF 170

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           I +D K ++L +WDTAGQE +  +    Y      L+ + +   ++  ++   W+ + + 
Sbjct: 66  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK- 124
Query: 61  HANANMTIMLIGNKCDL---AHRR---------AVSTEEGEQFA-KEHGLIFMEASAKTA 107
           H   N+ I+L+ NK DL    H R          V T++G   A +     ++E SAKT 
Sbjct: 125 HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTK 184
Query: 108 QNVEEAF 114
           + V E F
Sbjct: 185 EGVREVF 191

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D+KP+ L +WDTAGQE +  +    Y      L+ + +    ++ ++ A W  + R 
Sbjct: 50  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 109
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H  +   I+L+G K DL   +             ++  +G   AKE   + ++E SA T 
Sbjct: 110 HCPST-PIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 168
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 169 RGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D+KP+ L +WDTAGQE +  +    Y      L+ + +    ++ ++ A W  + R 
Sbjct: 51  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 110
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H  +   I+L+G K DL   +             ++  +G   AKE   + ++E SA T 
Sbjct: 111 HCPST-PIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 169
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 170 RGLKTVF 176

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 34/146 (23%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR-------ETF------ 48
           + +D KP+ L +WDTAGQE +  +    Y    G     DIT R       + F      
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSL 105
Query: 49  -------NHLASWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGE 89
                  N  A W  + R H   N  I+L+G K DL   +             ++  +G 
Sbjct: 106 VSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 164
Query: 90  QFAKEHGLI-FMEASAKTAQNVEEAF 114
             AKE G + ++E SA T + ++  F
Sbjct: 165 AMAKEIGAVKYLECSALTQRGLKTVF 190

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQ 60
           + +D+KP+ L +WDTAGQE +  +    Y      L+ + +    ++ ++ A W  + R 
Sbjct: 44  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 103
Query: 61  HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H  +   I+L+G K DL   +             ++  +G   AKE   + ++E SA T 
Sbjct: 104 HCPST-PIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKTVF 169

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+D++P+ L++ DTA  ++ R+  R Y   A   L+VY +  R++F+  +S+LE    HA
Sbjct: 63  TVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121
Query: 63  NA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 104
                ++  +L+GNK D+A  R V+  EG   A   G +F E SA
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSA 166

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ID + I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 71  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 130
Query: 64  ANMTIMLIGNKCDL-----------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN- 109
            N  ++L+G K DL            HR+  VS ++G   AK+ G   ++E SA  ++N 
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190
Query: 110 VEEAF-IKTAATIYK 123
           V + F + T A + K
Sbjct: 191 VRDIFHVATLACVNK 205

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ID + I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 50  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 109
Query: 64  ANMTIMLIGNKCDL-----------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN- 109
            N  ++L+G K DL            HR+  VS ++G   AK+ G   ++E SA  ++N 
Sbjct: 110 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 169
Query: 110 VEEAF-IKTAATIYK 123
           V + F + T A + K
Sbjct: 170 VRDIFHVATLACVNK 184

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 4   IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 63
           ID + I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 66  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 125
Query: 64  ANMTIMLIGNKCDLA-----------HRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN- 109
            N  ++L+G K DL            HR+  VS ++G   AK+ G   ++E SA  ++N 
Sbjct: 126 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 185
Query: 110 VEEAF-IKTAATIYK 123
           V + F + T A + K
Sbjct: 186 VRDIFHVATLACVNK 200

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 6   NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 65
           N+   L +WDTAGQE +  +    Y  +   LL + +  R +F+++++  E   +H    
Sbjct: 67  NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT 126
Query: 66  MTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 122
              +L+G K DL    +  V+ +EG+   ++ G + ++EAS+     + E F K+   I+
Sbjct: 127 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 6   NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 65
           N+   L +WDTAGQE +  +    Y  +   LL + +  R +F+++++  E   +H    
Sbjct: 68  NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT 127
Query: 66  MTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 122
              +L+G K DL    +  V+ +EG+   ++ G + ++EAS+     + E F K+   I+
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMT 67
           ++L +WDT+G   + ++    Y  +   LL +DI+R ET +  L  W  +   +  +   
Sbjct: 58  VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR- 116
Query: 68  IMLIGNKCD----------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 114
           ++LIG K D          L+H++   +S E+G   AK+ G  I++E SA T++    + 
Sbjct: 117 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 176
Query: 115 IKTAATI 121
            +TA+ +
Sbjct: 177 FRTASML 183

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMT 67
           ++L +WDT+G   + ++    Y  +   LL +DI+R ET +  L  W  +   +  +   
Sbjct: 59  VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-R 117
Query: 68  IMLIGNKCD----------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 114
           ++LIG K D          L+H++   +S E+G   AK+ G  I++E SA T++    + 
Sbjct: 118 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 177
Query: 115 IKTAATI 121
            +TA+ +
Sbjct: 178 FRTASML 184

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 2   ITIDNKPIKLQIWDTAGQESF-RSITR-SYYRGAAGALLVYDITRRETFNHLASW-LEDA 58
           +T+D +   L + DT   E   +S ++ S  +G +  ++VY I  R +F   +   ++  
Sbjct: 45  LTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLR 104
Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           R H   ++ I+L+GNK DLA  R VS EEG   A      F+E SA    NV E F
Sbjct: 105 RTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMT 67
           ++L +WDT+G   + ++    Y  +   LL +DI+R ET +  L  W  +   +  +   
Sbjct: 75  VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-R 133
Query: 68  IMLIGNKCD----------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 114
           ++LIG K D          L+H++   +S E+G   AK+ G  I++E SA T++    + 
Sbjct: 134 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
Query: 115 IKTAATI 121
            +TA+ +
Sbjct: 194 FRTASML 200

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + +D + ++L +WDTAGQE +  +    Y  +   L+ + I   ++  ++   W+ +   
Sbjct: 51  VEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL- 109
Query: 61  HANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H    + I+L+G K DL +            ++ V+++EG+  A + G   + E SAKT 
Sbjct: 110 HFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTG 169
Query: 108 QNVEEAF 114
             V E F
Sbjct: 170 YGVREVF 176

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           +T+  K   L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ + ++
Sbjct: 59  VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 118
Query: 61  HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHG-LIFMEASAKTA 107
           +A  N+  +LIG + DL               + +  E+G++ AKE G   ++E SA T 
Sbjct: 119 YA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 177
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 178 KGLKTVF 184

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANAN 65
           I L +W+  G+  +  +     +     L+VY IT R +F   + L   L  ARQ    +
Sbjct: 59  ILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TED 114
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           + I+L+GNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANAN 65
           I L +W+  G+  +  +     +     L+VY IT R +F   + L   L  ARQ    +
Sbjct: 59  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TED 114
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           + I+L+GNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANAN 65
           I L +W+  G+  +  +     +     L+VY IT R +F   + L   L  ARQ    +
Sbjct: 59  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TED 114
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           + I+L+GNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 115 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANAN 65
           I L +W+  G+  +  +     +     L+VY IT R +F   + L   L  ARQ    +
Sbjct: 90  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TED 145
Query: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           + I+L+GNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDA 58
           I +D +   L ++D   Q+  R +           ++VY +T + +F   + L   L  A
Sbjct: 42  IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 101
Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           RQ    ++ I+L+GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 102 RQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDA 58
           I +D +   L ++D   Q+  R +           ++VY +T + +F   + L   L  A
Sbjct: 47  IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           RQ    ++ I+L+GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 107 RQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ 60
           I +D + + L ++D   Q       R +      A L+V+ +T R +F+ +   L   R 
Sbjct: 65  IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 124
Query: 61  -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
              + ++ ++L+GNK DLA  R VS EEG   A       +E SA    N  E F
Sbjct: 125 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDA 58
           I +D +   L ++D   Q+  R +           ++VY +T + +F   + L   L  A
Sbjct: 47  IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
           RQ    ++ I+L+GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 107 RQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ 60
           I +D + + L ++D   Q       + +      A L+V+ +T R +F+ +   L   R 
Sbjct: 44  IMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 103
Query: 61  -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
              + ++ ++L+GNK DLA  R VS EEG   A       +E SA    N  E F
Sbjct: 104 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ 60
           I +D + + L ++D   Q       + +      A L+V+ +T R +F+ +   L   R 
Sbjct: 54  IMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 113
Query: 61  -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
              + ++ ++L+GNK DLA  R VS EEG   A       +E SA    N  E F
Sbjct: 114 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T++++  KL IWD  GQ+S RS  R+Y+    G + V D   R+        L S L + 
Sbjct: 56  TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115
Query: 59  RQHANANMTIMLIGNKCDLA 78
           R    A  T+++  NK DL 
Sbjct: 116 RL---AGATLLIFANKQDLP 132

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T++++  KL IWD  GQ+S RS  R+Y+    G + V D   R+        L S L + 
Sbjct: 56  TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115
Query: 59  RQHANANMTIMLIGNKCDLA 78
           R    A  T+++  NK DL 
Sbjct: 116 RL---AGATLLIFANKQDLP 132

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T++++  KL IWD  GQ+S RS  R+Y+    G + V D   R+        L S L + 
Sbjct: 54  TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 113
Query: 59  RQHANANMTIMLIGNKCDLA 78
           R    A  T+++  NK DL 
Sbjct: 114 RL---AGATLLIFANKQDLP 130

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE     A  L+   Q  
Sbjct: 67  TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED 126
Query: 63  NANMTIMLI-GNKCDLAHRRAVSTEEGEQFAKEH 95
                ++L+  NK D+ +   VS E  ++   +H
Sbjct: 127 ELRDAVLLVFANKQDMPNAMPVS-ELTDKLGLQH 159

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T++++  KL IWD  GQ+S RS  R+Y+    G + V D   R+        L S L + 
Sbjct: 56  TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEE 115
Query: 59  RQHANANMTIMLIGNKCDLA 78
           R    A  T+++  NK DL 
Sbjct: 116 RL---AGATLLIFANKQDLP 132

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 50  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 102
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 103 HRIINDREMRDAIILIFANKQDLP 126

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 51  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 103
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 104 HRIINDREMRDAIILIFANKQDLP 127

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 38  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 91  HRIINDREXRDAIILIFANKQDLP 114

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 360 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 412
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 413 HRIINDREMRDAIILIFANKQDLP 436

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 38  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 91  HRIINDREMRDAIILIFANKQDLP 114

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 38  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 91  HRIINDREMRDAIILIFANKQDLP 114

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T++ K I   +WD  GQ+  R + + Y++   G + V D   RE    +A  L+      
Sbjct: 55  TVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVD 114
Query: 63  NA-NMTIMLIGNKCDLAHRRAVS 84
              +  ++L  NK DL +  A+S
Sbjct: 115 ELRDAVLLLFANKQDLPNAMAIS 137

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 9   IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLEDARQHANA 64
           + ++IWD  GQ  FRS+   Y RG    + + D   RE      N L + L+  +     
Sbjct: 67  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG-- 124
Query: 65  NMTIMLIGNKCDLAH 79
            + ++++GNK DL +
Sbjct: 125 -IPVLVLGNKRDLPN 138

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 48  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 107
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 108 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 166
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 167 KGLKNVF 173

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 47  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 106
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 107 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 165
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 166 KGLKNVF 172

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 45  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 104
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 105 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 163
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 164 KGLKNVF 170

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 51  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 110
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 111 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 169
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 170 KGLKNVF 176

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 46  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 105
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 106 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 164
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 165 KGLKNVF 171

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 51  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 110
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 111 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 169
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 170 KGLKNVF 176

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 54  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 113
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 114 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 172
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 173 KGLKNVF 179

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 46  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 105
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 106 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 164
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 165 KGLKNVF 171

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKNVF 169

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 47  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 106
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 107 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 165
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 166 KGLKNVF 172

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 RGLKNVF 169

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T++++  KL IWD  G +S RS  R+Y+    G + V D   R+        L S L + 
Sbjct: 39  TLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 98
Query: 59  RQHANANMTIMLIGNKCDLA 78
           R    A  T+++  NK DL 
Sbjct: 99  RL---AGATLLIFANKQDLP 115

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE  N     L     ED
Sbjct: 55  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 114
Query: 58  ARQHANANMTIMLIGNKCDLAH 79
             + A     +++  NK DL +
Sbjct: 115 ELRDA----VLLVFANKQDLPN 132

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 3  TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 45
          T+  K I   +WD  GQ+  RS+ R YYR   G + V D   R
Sbjct: 55 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 3  TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 45
          T+  K I   +WD  GQ+  RS+ R YYR   G + V D   R
Sbjct: 55 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE  N     L     ED
Sbjct: 54  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 113
Query: 58  ARQHANANMTIMLIGNKCDLAH 79
             + A     +++  NK DL +
Sbjct: 114 ELRDA----VLLVFANKQDLPN 131

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE  N     L     ED
Sbjct: 203 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 262
Query: 58  ARQHANANMTIMLIGNKCDLAH 79
             + A     +++  NK DL +
Sbjct: 263 ELRDA----VLLVFANKQDLPN 280

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 3  TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 45
          T+  K I   +WD  GQ+  RS+ R YYR   G + V D   R
Sbjct: 38 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T++ + I   +WD  GQ+  R + R YY    G + V D   RE        ++DAR+  
Sbjct: 55  TVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDDAREEL 107
Query: 63  N--------ANMTIMLIGNKCDLAH 79
           +         +  I++  NK DL +
Sbjct: 108 HRMINEEELKDAIILVFANKQDLPN 132

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 57
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE  N     L     ED
Sbjct: 38  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 97
Query: 58  ARQHANANMTIMLIGNKCDLAH 79
             + A     +++  NK DL +
Sbjct: 98  ELRDA----VLLVFANKQDLPN 115

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  G +  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 51  TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 103
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 104 HRIINDREMRDAIILIFANKQDLP 127

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  G +  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 40  TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 92
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 93  HRIINDREMRDAIILIFANKQDLP 116

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T+  K +K  +WD  G +  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 41  TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 93
Query: 63  N--------ANMTIMLIGNKCDLA 78
           +         +  I++  NK DL 
Sbjct: 94  HRIINDREMRDAIILIFANKQDLP 117

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQ 60
           + I  +P  L + DTAGQE +  +    Y      L+ + +    +F ++   W+ +   
Sbjct: 44  VMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 61  HANANMTIMLIGNKCDLA------------HRRAVSTEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL              ++ ++ E  E+ A++   + ++E SA T 
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLED 57
           IT  N  IKL  WD  GQ  FRS+   Y RG +  + + D   +E      N L + L+ 
Sbjct: 62  ITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 119
Query: 58  ARQHANANMTIMLIGNKCDLA 78
            +      + ++++GNK DL 
Sbjct: 120 PQLQG---IPVLVLGNKRDLP 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-89
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-89
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-88
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	5e-88
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-87
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-87
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-85
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-84
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-84
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-84
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	9e-84
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-83
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	7e-83
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-82
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	7e-82
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	7e-82
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-82
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-82
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-81
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-81
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-81
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-81
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-80
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-80
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-80
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	5e-80
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-80
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	7e-80
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-79
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-79
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-79
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-78
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-78
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	9e-78
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-77
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-76
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	5e-76
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-74
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-74
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-70
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-68
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-66
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-65
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	8e-65
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-63
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-63
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-63
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-62
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-62
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	3e-62
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-60
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-60
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-58
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-58
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-58
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-58
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	7e-58
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-57
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	7e-57
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-56
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-56
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	9e-56
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-54
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-52
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-49
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-48
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	8e-46
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-36
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-33
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-32
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-31
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	6e-31
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-30
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-30
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	5e-30
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-28
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	7e-28
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-27
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-27
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	9e-27
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-23
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-19
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-13
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	3e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-11
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	7e-11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-10
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-10
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-08
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-07
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	3e-05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	6e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-04
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	4e-04

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  257 bits (659), Expect = 3e-89
 Identities = 77/134 (57%), Positives = 96/134 (71%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR 
Sbjct: 51  IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 110

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  
Sbjct: 111 LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK 170

Query: 121 IYKKIQDGVFDVSN 134
           I  KI+ G  D   
Sbjct: 171 ILNKIESGELDPER 184

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  257 bits (658), Expect = 4e-89
 Identities = 105/130 (80%), Positives = 112/130 (86%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           M+ ID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQ
Sbjct: 62  MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H+++NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct: 122 HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 181

Query: 121 IYKKIQDGVF 130
           IY+KIQ G+F
Sbjct: 182 IYRKIQQGLF 191

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  256 bits (656), Expect = 3e-88
 Identities = 69/170 (40%), Positives = 101/170 (59%), Gaps = 6/170 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I+ K IK QIWDTAGQE +R+IT +YYRGA GAL+VYDI++  ++ +   WL + R+
Sbjct: 54  TLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE 113

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A+ N+ + LIGNK DLAH RAV TEE + FA+E+ L+F E SA  ++NV++AF +   T
Sbjct: 114 NADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT 173

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGP------SGGRDGSSSQAGGCC 164
           IY+K+     D+ + S          P            +   +    CC
Sbjct: 174 IYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  254 bits (652), Expect = 5e-88
 Identities = 78/134 (58%), Positives = 97/134 (72%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           ++ +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LA+WL DAR 
Sbjct: 66  VVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART 125

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ ++L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF+K A T
Sbjct: 126 LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 185

Query: 121 IYKKIQDGVFDVSN 134
           I  KI  G  D   
Sbjct: 186 ILNKIDSGELDPER 199

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  252 bits (645), Expect = 6e-87
 Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 7/164 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  +
Sbjct: 49  TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A + +  +L+GNKCDL  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  
Sbjct: 109 YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
           I + +     + + +            G    +  S +  GGCC
Sbjct: 169 IKESMSQQNLNETTQK-------KEDKGNVNLKGQSLTNTGGCC 205

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  252 bits (645), Expect = 6e-87
 Identities = 65/140 (46%), Positives = 94/140 (67%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  +
Sbjct: 57  TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 116

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA 
Sbjct: 117 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 176

Query: 121 IYKKIQDGVFDVSNESYGIK 140
           I K++  G      E   +K
Sbjct: 177 IKKRMGPGATAGGAEKSNVK 196

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  247 bits (633), Expect = 2e-85
 Identities = 79/123 (64%), Positives = 100/123 (81%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR 
Sbjct: 56  IIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 115

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             N N  I+LIGNK DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  
Sbjct: 116 LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175

Query: 121 IYK 123
           IY+
Sbjct: 176 IYQ 178

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  246 bits (631), Expect = 1e-84
 Identities = 60/142 (42%), Positives = 84/142 (59%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I  ++K IKLQIWDTAG E +R+IT +YYRGA G +L+YDIT  E+FN +  W    + 
Sbjct: 49  TIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 108

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           ++  N  ++L+GNKCD+   R VS+E G Q A   G  F EASAK   NV++ F +    
Sbjct: 109 YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 168

Query: 121 IYKKIQDGVFDVSNESYGIKVG 142
           I +K+ + +        G K G
Sbjct: 169 ICEKMSESLDTADPAVTGAKQG 190

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  246 bits (629), Expect = 2e-84
 Identities = 66/136 (48%), Positives = 87/136 (63%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K IK QIWDTAGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R 
Sbjct: 46  SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 105

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HA++N+ IML+GNK DL H RAV T+E   FA+++ L F+E SA  + NVEEAF      
Sbjct: 106 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 165

Query: 121 IYKKIQDGVFDVSNES 136
           IY+ +           
Sbjct: 166 IYRIVSQKQIADRAAH 181

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  245 bits (627), Expect = 3e-84
 Identities = 57/126 (45%), Positives = 82/126 (65%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +    +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   
Sbjct: 66  TVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD 125

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HA A + +ML+GNK DL+  R V TEE   FA+ +GL+F+E SA  + NVE AF      
Sbjct: 126 HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKE 185

Query: 121 IYKKIQ 126
           I+ K+ 
Sbjct: 186 IFAKVS 191

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  243 bits (623), Expect = 9e-84
 Identities = 65/122 (53%), Positives = 85/122 (69%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R 
Sbjct: 70  SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 129

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E SA  + NVE AF      
Sbjct: 130 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE 189

Query: 121 IY 122
           IY
Sbjct: 190 IY 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  244 bits (624), Expect = 1e-83
 Identities = 58/136 (42%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I+ + +KLQIWDTAGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q
Sbjct: 67  TVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ 126

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A+  +  +L+GNK DLA RR VS +  E+F++   + ++E SAK + NVE+ F+  A  
Sbjct: 127 YASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACR 186

Query: 121 IYKKIQDGVFDVSNES 136
           +  + +      +N S
Sbjct: 187 LISEARQNTLV-NNVS 201

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  241 bits (617), Expect = 7e-83
 Identities = 58/127 (45%), Positives = 87/127 (68%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           ++ +D   +KLQ+WDTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  +
Sbjct: 52  VLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE 111

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A  ++ +ML+GNK D AH R V  E+GE+ AKE+GL FME SAKT  NV+ AF   A  
Sbjct: 112 YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 171

Query: 121 IYKKIQD 127
           + ++   
Sbjct: 172 LKRRSMK 178

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  240 bits (615), Expect = 3e-82
 Identities = 62/131 (47%), Positives = 87/131 (66%), Gaps = 1/131 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I  K +KLQIWDTAGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R+
Sbjct: 70  TLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRK 129

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAA 119
           +A +N+  +LIGNK DL+  R VS  E +  A+ +  L  +E SAK + NVEEAF++ A 
Sbjct: 130 YAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189

Query: 120 TIYKKIQDGVF 130
            +  +    +F
Sbjct: 190 ELIMRHGGPLF 200

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  238 bits (609), Expect = 7e-82
 Identities = 54/123 (43%), Positives = 83/123 (67%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++
Sbjct: 47  TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  
Sbjct: 107 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

Query: 121 IYK 123
           + K
Sbjct: 167 LPK 169

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  239 bits (611), Expect = 7e-82
 Identities = 56/127 (44%), Positives = 80/127 (62%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            +    K +KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + 
Sbjct: 64  TVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           ++  N  ++L+GNKCD+   R V TE+G+  A++ G  F EASAK   +V +AF +    
Sbjct: 124 YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183

Query: 121 IYKKIQD 127
           I  K+ D
Sbjct: 184 ICDKMSD 190

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  238 bits (610), Expect = 8e-82
 Identities = 64/127 (50%), Positives = 89/127 (70%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +
Sbjct: 49  TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE 108

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A  
Sbjct: 109 HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 168

Query: 121 IYKKIQD 127
           I  K+  
Sbjct: 169 IKAKMDK 175

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  238 bits (609), Expect = 9e-82
 Identities = 51/124 (41%), Positives = 80/124 (64%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +++  +K +IWDTAGQE + S+   YYRGAA A++V+D+T + +F     W+++ + 
Sbjct: 53  TLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA 112

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             N NM + L GNK DL   R V+ E+ + +A+E+GL FME SAKTA NV+E F + A  
Sbjct: 113 QGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR 172

Query: 121 IYKK 124
           + + 
Sbjct: 173 LPRV 176

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  237 bits (607), Expect = 2e-81
 Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 1/129 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I+ + +KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q
Sbjct: 50  TVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ 109

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           + + ++  +L+GNK D   R+ V TE+  +FA + G+   E SAK   NVEE F      
Sbjct: 110 NCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL 168

Query: 121 IYKKIQDGV 129
           + +  +D +
Sbjct: 169 VLRAKKDNL 177

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  237 bits (606), Expect = 2e-81
 Identities = 51/123 (41%), Positives = 74/123 (60%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            +   N+  K  IWDTAG E FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQ
Sbjct: 47  TVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H   ++ + + GNKCDL   R V   + + +A     IF+E SAK A N+ E FI+ +  
Sbjct: 107 HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR 166

Query: 121 IYK 123
           I  
Sbjct: 167 IPS 169

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  237 bits (608), Expect = 2e-81
 Identities = 55/127 (43%), Positives = 79/127 (62%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            +   +K IKLQIWDTAGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + 
Sbjct: 63  TVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT 122

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           ++  N  ++L+GNKCDL   R V  E+G + A + G  F EASAK   NV++ F +    
Sbjct: 123 YSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182

Query: 121 IYKKIQD 127
           I +K+ +
Sbjct: 183 ICEKMNE 189

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  237 bits (608), Expect = 2e-81
 Identities = 62/125 (49%), Positives = 90/125 (72%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  +
Sbjct: 74  TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 133

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA 
Sbjct: 134 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 193

Query: 121 IYKKI 125
           I K++
Sbjct: 194 IKKRM 198

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  235 bits (601), Expect = 1e-80
 Identities = 44/123 (35%), Positives = 70/123 (56%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I  K + L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+
Sbjct: 47  KLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
                + + ++GNK DL   R VS +E E +A+  G      SAK  + +EE F+     
Sbjct: 107 MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR 166

Query: 121 IYK 123
           + +
Sbjct: 167 MIE 169

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  236 bits (605), Expect = 1e-80
 Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I+ K +KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +
Sbjct: 61  TVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNE 120

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HAN    ++L+GNK D+   R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  
Sbjct: 121 HANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 179

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPS 150
           I +KI               +      G S
Sbjct: 180 IQEKIDSNKLVGVGNGKEGNISINSGSGNS 209

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  234 bits (599), Expect = 2e-80
 Identities = 61/127 (48%), Positives = 82/127 (64%), Gaps = 1/127 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I+ K +KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +
Sbjct: 44  TVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE 103

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HAN    ++L+GNK D+   R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  
Sbjct: 104 HANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162

Query: 121 IYKKIQD 127
           I +KI  
Sbjct: 163 IQEKIDS 169

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  234 bits (599), Expect = 5e-80
 Identities = 58/126 (46%), Positives = 86/126 (68%), Gaps = 1/126 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +  K I+LQIWDTAGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   +
Sbjct: 67  TVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK 126

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAA 119
           +A+ +  ++L+GNK D    R ++ ++GE+FA++  G+ F EASAK   NV+E F+K   
Sbjct: 127 YASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186

Query: 120 TIYKKI 125
            I KK+
Sbjct: 187 DILKKM 192

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  234 bits (599), Expect = 5e-80
 Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 1/126 (0%)

Query: 5   DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-N 63
             + I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA +
Sbjct: 66  RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125

Query: 64  ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123
            N  I+L GNK DL  +RAV  EE  + A+++G+ + E SA    N+  A       I K
Sbjct: 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185

Query: 124 KIQDGV 129
           +++  V
Sbjct: 186 RMERSV 191

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  234 bits (598), Expect = 7e-80
 Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 4/143 (2%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I++D    KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   
Sbjct: 56  TISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET 115

Query: 61  HANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
           +   N +  ML+GNK D    R V   EG +FA++H ++F+EASAKT   V+ AF +   
Sbjct: 116 YCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 174

Query: 120 TIYKKIQDGVFDVSNESYGIKVG 142
            I +    G+++  N++ G   G
Sbjct: 175 KIIQTP--GLWESENQNSGPSSG 195

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  232 bits (595), Expect = 1e-79
 Identities = 54/123 (43%), Positives = 85/123 (69%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + ++++ ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+  + W++D R 
Sbjct: 55  TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT 114

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
              +++ IML+GNK DL+ +R VSTEEGE+ AKE  ++F+E SAK   NV++ F + AA 
Sbjct: 115 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174

Query: 121 IYK 123
           +  
Sbjct: 175 LPG 177

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  233 bits (596), Expect = 2e-79
 Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 10/164 (6%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + ++++ ++LQ+WDTAG E FRS+  SY R +  A++VYDIT   +F     W++D R 
Sbjct: 57  TMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT 116

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
              +++ IML+GNK DLA +R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA 
Sbjct: 117 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 176

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
           +             +   IK+                   GGC 
Sbjct: 177 LPGMESTQD-RSREDMIDIKLEKP---------QEQPVSEGGCL 210

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  232 bits (593), Expect = 4e-79
 Identities = 49/124 (39%), Positives = 77/124 (62%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            +   N+  K  IWDTAGQE F S+   YYRG+A A++VYDIT++++F  L  W+++ ++
Sbjct: 64  TVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE 123

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H   N+ + + GNKCDL+  R V  ++ +++A+  G I +E SAK A N+EE F   +  
Sbjct: 124 HGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183

Query: 121 IYKK 124
           I   
Sbjct: 184 IPPL 187

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  231 bits (591), Expect = 2e-78
 Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 11/140 (7%)

Query: 1   MITIDNKP----------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH 50
            +  + +           + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F +
Sbjct: 66  RVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 125

Query: 51  LASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 109
           + +W+   + +A   N  I+LIGNK DL  +R V+  +  + A ++G+ + E SA T QN
Sbjct: 126 VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQN 185

Query: 110 VEEAFIKTAATIYKKIQDGV 129
           VE+A       I K+++  V
Sbjct: 186 VEKAVETLLDLIMKRMEQCV 205

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  229 bits (587), Expect = 4e-78
 Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 6/130 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D +   LQ+WDTAGQE FRSI +SY+R A G LL+YD+T  ++F ++  W++    
Sbjct: 69  TLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED 128

Query: 61  HANANMTIMLIGNKCDLAH------RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
            A+  + IML+GNK D+        ++ V    GE+ A  +G +F E SAK   N+ EA 
Sbjct: 129 AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAV 188

Query: 115 IKTAATIYKK 124
           +  A  + K+
Sbjct: 189 LHLAREVKKR 198

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  229 bits (587), Expect = 6e-78
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 7/143 (4%)

Query: 1   MITIDNKPIKLQIW--DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA 58
            +TI +  + ++++  DTAG + ++     Y+ G   A+LV+D++  E+F    +W E  
Sbjct: 63  PVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL 122

Query: 59  RQ---HANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAK-TAQNVEEA 113
           +         +  +L+ NK DL   R  V  +  + +A  + L F + SA    ++ +  
Sbjct: 123 KSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAP 182

Query: 114 FIKTAATIYKKIQDGVFDVSNES 136
           F+  A T Y+  +D V    +  
Sbjct: 183 FLSIATTFYRNYEDKVAAFQDAC 205

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  227 bits (582), Expect = 9e-78
 Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I ++++ ++L +WDTAGQE F +IT++YYRGA   +LV+  T RE+F  ++SW E    
Sbjct: 46  QIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA 105

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
               ++   L+ NK DL     +  EE E  AK   L F   S K   NV E F   A  
Sbjct: 106 EVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

Query: 121 IYKK 124
             +K
Sbjct: 165 HLQK 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  226 bits (578), Expect = 5e-77
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 1   MITIDNKP-IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR 59
            IT+     + LQIWD  GQ     +   Y  GA G LLVYDIT  ++F +L  W    +
Sbjct: 47  RITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVK 106

Query: 60  Q---HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
           +    +     + L+GNK DL H R +  E+  +F +E+G      SAKT  +V   F K
Sbjct: 107 KVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQK 166

Query: 117 TAATIYKKIQ 126
            AA I     
Sbjct: 167 VAAEILGIKL 176

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  225 bits (576), Expect = 2e-76
 Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 5/128 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR 59
            + ID + IK+Q+WDTAGQE FR S+ + YYR     + VYD+T   +F+ L +W+E+ +
Sbjct: 61  AVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 120

Query: 60  QHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA---QNVEEAFI 115
           QH  AN +  +L+GNKCDL     V T+  ++FA  H +   E SAK      +VE  F+
Sbjct: 121 QHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFM 180

Query: 116 KTAATIYK 123
             A  +  
Sbjct: 181 TLAHKLKS 188

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  225 bits (575), Expect = 5e-76
 Identities = 39/126 (30%), Positives = 62/126 (49%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            +      IK  +WDTAGQE    +   YY GA+GA+L +D+T R T  +LA W+++ + 
Sbjct: 53  FLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQA 112

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
                  I++  NK D+ +R+ +S +   +  K     + E SAKTA N    F+  A  
Sbjct: 113 VVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARI 172

Query: 121 IYKKIQ 126
              +  
Sbjct: 173 FTGRPD 178

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  219 bits (560), Expect = 3e-74
 Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 6/130 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D   + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L++W ++   
Sbjct: 48  DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 107

Query: 61  HANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 115
           +A+     +   +++GNK D++  R VSTEE + + +++G   + E SAK A NV  AF 
Sbjct: 108 YADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166

Query: 116 KTAATIYKKI 125
           +    +    
Sbjct: 167 EAVRRVLATE 176

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  220 bits (562), Expect = 3e-74
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D++ + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++   
Sbjct: 49  EVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI 108

Query: 61  HAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
            A+     N   +++GNK DL +R+  +         ++ + + E SAK A NVE+AF  
Sbjct: 109 QASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168

Query: 117 TAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
            A    K+  +     +     IK+            + + + A  C 
Sbjct: 169 IARNALKQETEVELY-NEFPEPIKL---------DKNERAKASAESCS 206

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  219 bits (560), Expect = 6e-74
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
             +   IK  IWDTAGQE + SI   YYRGA  A++V+DI+   T +   +W+   +   
Sbjct: 87  NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--I 144

Query: 63  NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122
           ++N  I+L+ NK D      V   E +++A+++ L+F++ SAKT  N++  F   A  IY
Sbjct: 145 SSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203

Query: 123 KKIQD 127
           K I +
Sbjct: 204 KNIIN 208

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  210 bits (537), Expect = 1e-70
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 7/133 (5%)

Query: 1   MITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR 59
            +T+D +K   +Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++  
Sbjct: 49  EVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL 108

Query: 60  QHANA----NMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEA 113
            HAN         +++GNK D    ++ VS +  ++ AK  G I     SAK A NV+ A
Sbjct: 109 VHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTA 168

Query: 114 FIKTAATIYKKIQ 126
           F + A +  ++ Q
Sbjct: 169 FEEIARSALQQNQ 181

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  205 bits (523), Expect = 5e-68
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
              +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  + 
Sbjct: 57  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 116

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
              N+ I+L GNK D+  R+     +   F ++  L + + SAK+  N E+ F+  A  +
Sbjct: 117 CE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

Query: 122 YKKIQ 126
                
Sbjct: 174 IGDPN 178

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  199 bits (509), Expect = 1e-66
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLASWLEDA-R 59
           I +D + + L ++D   Q       +    +     L+V+ +T R +F+ +   L     
Sbjct: 44  IMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 103

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
              + ++ ++L+GNK DLA  R VS EEG   A       +E SA    N  E F     
Sbjct: 104 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

Query: 120 TIYKK 124
            I  +
Sbjct: 164 QIRLR 168

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  197 bits (503), Expect = 1e-65
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 1/125 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-AR 59
           + ++D  P +L I DTAGQE F ++   Y R   G LLV+ I  R++FN +        R
Sbjct: 49  ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR 108

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
                +  ++L+GNK DL  +R V   E   F   H + + EASAK   NV+EAF +   
Sbjct: 109 VKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 168

Query: 120 TIYKK 124
            + K 
Sbjct: 169 AVRKY 173

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  196 bits (500), Expect = 3e-65
 Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 1/124 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R 
Sbjct: 45  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 104

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + N+  +L+GNK DL  +R VS EE +  A +  + ++E SAKT  NV++ F      
Sbjct: 105 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164

Query: 121 IYKK 124
           I  +
Sbjct: 165 IRAR 168

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  195 bits (499), Expect = 8e-65
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLASWLED-AR 59
           I +D + + L ++D   Q       R    +     L+V+ +T R +F+ +   L     
Sbjct: 65  IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 124

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
              + ++ ++L+GNK DLA  R VS EEG   A       +E SA    N  E F     
Sbjct: 125 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

Query: 120 TIYKKIQ 126
            I  +  
Sbjct: 185 QIRLRRG 191

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  192 bits (491), Expect = 1e-63
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R 
Sbjct: 59  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + N+  +L+GNK DL  +R VS EE +  A++  + ++E SAKT  NV++ F      
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178

Query: 121 IYKKIQD 127
           I  +  +
Sbjct: 179 IRARKME 185

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  191 bits (489), Expect = 2e-63
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSIT--RSYYRGAAGALLVYDITRRETFNHLASWLED-A 58
           +T+D +   L + DT   E         S  +G +  ++VY I  R +F   +       
Sbjct: 45  LTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLR 104

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
           R H   ++ I+L+GNK DLA  R VS EEG   A      F+E SA    NV E F    
Sbjct: 105 RTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164

Query: 119 ATIYKKIQD 127
             +  + +D
Sbjct: 165 RQLRLRRRD 173

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  192 bits (490), Expect = 2e-63
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           +T+      L + DTAGQ+ +  +  S+  G  G +LVY +T   +F  + S  +     
Sbjct: 65  VTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG 124

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H    + ++L+GNK DL+  R V   EG++ A+  G  FME+SA+  Q  +  F K    
Sbjct: 125 HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE 184

Query: 121 IYKK 124
           I + 
Sbjct: 185 IARV 188

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  190 bits (486), Expect = 1e-62
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 15/164 (9%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D + +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R 
Sbjct: 55  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + N+  +L+GNK DL  +R VS EE +  A++  + ++E SAKT  NV++ F      
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174

Query: 121 IYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 164
           I  +  +   + +              G    +  +      CC
Sbjct: 175 IRARKMEDSKEKN--------------GKKKRKSLAKRIRERCC 204

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  188 bits (481), Expect = 3e-62
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           IT++ +   LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +          
Sbjct: 47  ITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
                + IML+GNK DL   R +S EEG+  A+     F+E+SAK  Q   + F +    
Sbjct: 107 VGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

Query: 121 IYKK 124
             K 
Sbjct: 167 AEKM 170

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  188 bits (480), Expect = 3e-62
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           I +D +   L ++D   Q+  R +           ++VY +T + +F   +       R 
Sbjct: 42  IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 101

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
               ++ I+L+GNK DL   R VS +EG   A      F+E SA    NV+  F      
Sbjct: 102 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161

Query: 121 IYKK 124
           I  +
Sbjct: 162 IRLR 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  183 bits (468), Expect = 3e-60
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-AR 59
              IDN+   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R
Sbjct: 58  HTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 117

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTA 118
                +  ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK    NV++ F    
Sbjct: 118 VKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

Query: 119 ATIYKK 124
             I ++
Sbjct: 178 RVIRQQ 183

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  183 bits (466), Expect = 4e-60
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R 
Sbjct: 44  IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV 103

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
                + ++L+GNK DL   R VS+ EG   A+E G  FME SAK+   V+E F +    
Sbjct: 104 KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163

Query: 121 IYK 123
           +  
Sbjct: 164 MNY 166

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  179 bits (457), Expect = 1e-58
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 2/125 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I+ D     LQI DT G   F ++ R         +LVY IT R++   L    E   + 
Sbjct: 44  ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI 103

Query: 62  AN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
                ++ IML+GNKCD +  R V + E E  A+     FME SAK   NV+E F +   
Sbjct: 104 KGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

Query: 120 TIYKK 124
              ++
Sbjct: 164 LEKRR 168

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  179 bits (456), Expect = 1e-58
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++
Sbjct: 43  QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKR 102

Query: 61  HANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
             ++ ++ ++L+GNK DLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF     
Sbjct: 103 VKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161

Query: 120 TIYK 123
            I +
Sbjct: 162 EIRQ 165

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  179 bits (455), Expect = 2e-58
 Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 3/127 (2%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            +TI+   +K +IWDTAGQE F S+   YYR A  AL+VYD+T+ ++F     W+++  +
Sbjct: 44  RVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE 103

Query: 61  HANANMTIMLIGNKCDLAH---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 117
            A+ ++ I L+GNK D       R V+ EEGE+ A+E GL+F E SAKT +NV + F+  
Sbjct: 104 QASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163

Query: 118 AATIYKK 124
              I  K
Sbjct: 164 GEKIPLK 170

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  178 bits (454), Expect = 3e-58
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R 
Sbjct: 44  VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAA 119
               ++ ++L+GNKCDL   R V  E+G+  A++     F+E+SAK+  NV E F     
Sbjct: 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

Query: 120 TIYK 123
            I +
Sbjct: 164 QINR 167

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  178 bits (453), Expect = 7e-58
 Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 3/126 (2%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-AR 59
             TID++ + ++I DTAGQE        + R   G +LVYDIT R +F  +         
Sbjct: 68  QATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE 126

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTA 118
                N+T++L+GNK DL H R VSTEEGE+ A E    F E SA T + N+ E F +  
Sbjct: 127 IKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186

Query: 119 ATIYKK 124
             + ++
Sbjct: 187 REVRRR 192

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  177 bits (450), Expect = 3e-57
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 2   ITIDNKP---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED- 57
           + +D +    I L +W+  G+  +  +     +     L+VY IT R +F   +      
Sbjct: 80  LMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL 137

Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 117
            R     ++ I+L+GNK DL   R VS  EG   A      F+E SA    NV+E F   
Sbjct: 138 RRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197

Query: 118 AATIYKK 124
              +  +
Sbjct: 198 VRQVRLR 204

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  175 bits (446), Expect = 7e-57
 Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
            T+D++P+ L++ DTA  ++ R+  R Y   A   L+VY +  R++F+  +S+LE    H
Sbjct: 62  ETVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALH 120

Query: 62  A---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT-AQNVEEAFIKT 117
           A     ++  +L+GNK D+A  R V+  EG   A   G +F E SA    ++V+  F + 
Sbjct: 121 AKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180

Query: 118 AATIYKK 124
                ++
Sbjct: 181 VREARRE 187

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  173 bits (440), Expect = 5e-56
 Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 2/124 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQ 60
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E   R 
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             + ++ ++L+GNKCDL   R V T++ +  A+ +G+ F+E SAKT Q V++AF      
Sbjct: 105 KDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163

Query: 121 IYKK 124
           I K 
Sbjct: 164 IRKH 167

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  173 bits (441), Expect = 6e-56
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ- 60
           I+ D     LQI DT G   F ++ R         +LV+ +T +++   L    +   Q 
Sbjct: 49  ISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI 108

Query: 61  -HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
             +  ++ +ML+GNKCD   +R V T E +  A+E    FME SAK   NV+E F +   
Sbjct: 109 KGSVEDIPVMLVGNKCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

Query: 120 TIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165
              ++                     I G   G+   + +  G C+
Sbjct: 168 LETRRNMS----------------LNIDGKRSGKQKRTDRVKGKCT 197

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  172 bits (439), Expect = 9e-56
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 2/124 (1%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++ 
Sbjct: 62  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV 121

Query: 62  ANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            ++ ++ ++L+GNKCDL   R V T++  + AK +G+ F+E SAKT Q VE+AF      
Sbjct: 122 KDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180

Query: 121 IYKK 124
           I + 
Sbjct: 181 IRQY 184

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  169 bits (431), Expect = 2e-54
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 2   ITIDNKP---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED- 57
           + +D +    I L +W+  G+  +  +     +     L+VY IT R +F   +      
Sbjct: 49  LMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL 106

Query: 58  ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 117
            R     ++ I+L+GNK DL   R VS  EG   A      F+E SA    NV+E F   
Sbjct: 107 RRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166

Query: 118 AATIYKK 124
              +  +
Sbjct: 167 VRQVRLR 173

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  163 bits (415), Expect = 3e-52
 Identities = 27/139 (19%), Positives = 59/139 (42%), Gaps = 14/139 (10%)

Query: 2   ITIDNK---PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-FNHLASWLED 57
           I I +K    + L +WD AG+E F S    +    A  L VYD+++ +   + +  WL +
Sbjct: 46  IQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFN 105

Query: 58  ARQHANANMTIMLIGNKCDLAHRR---AVSTEEGEQFAKEHGL-----IFMEASAKTAQN 109
            +  A+ +  ++L+G   D++  +   A  ++  ++   + G           + + +  
Sbjct: 106 IKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDA 164

Query: 110 VEEAFIKTAATIYK-KIQD 127
           + +            KI+D
Sbjct: 165 LAKLRKTIINESLNFKIRD 183

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  156 bits (396), Expect = 2e-49
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D +   L I D  G    +     +       + V+ +    +F  + ++       
Sbjct: 60  IVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF 114

Query: 62  ANA-NMTIMLIGNKCDL--AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKT 117
            NA  + ++L+G +  +  A+ R +      + + +     + E  A    NVE  F   
Sbjct: 115 RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDV 174

Query: 118 AATIYKK 124
           A  +   
Sbjct: 175 AQKVVAL 181

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  162 bits (410), Expect = 5e-48
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 4/122 (3%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
             + K      WD  GQE   +  + +   ++  +L+ D     T ++   WL    ++ 
Sbjct: 92  DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG 148

Query: 63  NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 122
                ++++ NK D      +  ++  +        F   S K    VE       + + 
Sbjct: 149 G-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207

Query: 123 KK 124
             
Sbjct: 208 HP 209

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  147 bits (372), Expect = 8e-46
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 11/129 (8%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DA 58
           + +D +   + I + AG    +     +   A   + V+ +    +F  ++         
Sbjct: 47  MLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL 101

Query: 59  RQHANANMTIMLIG--NKCDLAHRRAVSTEEGEQF-AKEHGLIFMEASAKTAQNVEEAFI 115
           R      + + L+G  ++   +  R V         A      + E  A    NV+  F 
Sbjct: 102 RGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQ 161

Query: 116 KTAATIYKK 124
           + A  +   
Sbjct: 162 EVAQKVVTL 170

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  123 bits (312), Expect = 1e-36
 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQ 60
           +   N+   L +WDTAGQE +  +    Y  +   LL + +  R +F+++++ W  + + 
Sbjct: 64  MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123

Query: 61  HANANMTIMLIGNKCDLAH--RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 114
           +       +L+G K DL       V+ +EG+   ++ G + ++EAS+     + E F
Sbjct: 124 YI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  115 bits (290), Expect = 2e-33
 Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 16/133 (12%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
            + ++   + L +WDTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + +
Sbjct: 48  NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK 107

Query: 60  QHANANMTIMLIGNKCDL----------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQ 108
            +A   + I+L+G K DL               ++T +GE+  K  G   ++E S+K+ +
Sbjct: 108 HYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQE 166

Query: 109 NVEEAF---IKTA 118
           NV+  F   I+  
Sbjct: 167 NVKGVFDAAIRVV 179

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  115 bits (289), Expect = 6e-33
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQ 60
           + +D + + L +WDTAGQE +  +    YRGA   +L + +  + ++ ++   W+ + R+
Sbjct: 50  VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109

Query: 61  HANANMTIMLIGNKCDL--------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVE 111
            A  N+ I+L+G K DL         H   +++ +GE+  K+ G   ++E S+KT QNV+
Sbjct: 110 FA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168

Query: 112 EAF 114
             F
Sbjct: 169 AVF 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  114 bits (286), Expect = 2e-32
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 15/128 (11%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
            + +  KP+ L IWDTAGQ+ +  +   +Y  A+  LL +D+T   +F+++ + W  +  
Sbjct: 74  NLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN 133

Query: 60  QHANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKT 106
                 + I+++G K DL   ++            V+   G++ A+  G + ++E SA+ 
Sbjct: 134 HFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL 192

Query: 107 AQNVEEAF 114
             NV   F
Sbjct: 193 HDNVHAVF 200

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  111 bits (279), Expect = 2e-31
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 15/128 (11%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
            I +D K ++L +WDTAGQE +  +    Y      L+ + +   ++  ++   W+ + +
Sbjct: 65  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK 124

Query: 60  QHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGLI-FMEASAKT 106
                N+ I+L+ NK DL              +  V T++G   A       ++E SAKT
Sbjct: 125 HFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKT 183

Query: 107 AQNVEEAF 114
            + V E F
Sbjct: 184 KEGVREVF 191

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  109 bits (275), Expect = 6e-31
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 15/128 (11%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
            I +D K ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + +
Sbjct: 65  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 124

Query: 60  QHANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKT 106
                N+ I+L+GNK DL              +  V +EEG   A       ++E SAKT
Sbjct: 125 HFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKT 183

Query: 107 AQNVEEAF 114
            + V E F
Sbjct: 184 KEGVREVF 191

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  107 bits (270), Expect = 2e-30
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D KP+ L +WDTAGQE +  +    Y     +L+ + +    +F ++ +      +
Sbjct: 45  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104

Query: 61  HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL                 ++  +G   AKE G + ++E SA T 
Sbjct: 105 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 164

Query: 108 QNVEEAF 114
           + ++  F
Sbjct: 165 RGLKTVF 171

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  107 bits (269), Expect = 4e-30
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 16/134 (11%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D KP+ L +WDTAGQE +  +    Y      L+ + +    +F ++ +      +
Sbjct: 70  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129

Query: 61  HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL                 ++  +G   AKE G + ++E SA T 
Sbjct: 130 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189

Query: 108 QNVEEAF---IKTA 118
           + ++  F   I+  
Sbjct: 190 RGLKTVFDEAIRAV 203

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  108 bits (272), Expect = 5e-30
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 48/166 (28%)

Query: 5   DNKPIKLQIW-------DTAGQESFRSITRSYYRGAA----------------------- 34
           D    K+ I        D   Q    +  + Y + AA                       
Sbjct: 91  DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQD 150

Query: 35  --------------GALLVYDITR--RETFNHLASWLEDARQHANA-NMTIMLIGNKCDL 77
                         G LL  D++R     F+    ++ +           I+++  KCD 
Sbjct: 151 FEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE 210

Query: 78  AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 123
              R +        +K+  L  +E SA++  NV+ AF      I K
Sbjct: 211 GVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLIDK 255

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  103 bits (258), Expect = 2e-28
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 16/129 (12%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
              ID + I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +   W  + +
Sbjct: 47  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 106

Query: 60  QHANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKT 106
           +    N  ++L+G K DL              +  VS ++G   AK+ G   ++E SA  
Sbjct: 107 EFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165

Query: 107 AQN-VEEAF 114
           ++N V + F
Sbjct: 166 SENSVRDIF 174

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  101 bits (254), Expect = 7e-28
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
           ++++D +P++LQ+ DTAGQ+ F  +    Y      LL + +    +F +++  W+ + R
Sbjct: 60  VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119

Query: 60  QHANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKT 106
            H      I+L+G + DL                 V  E  +  A+E     ++E SA T
Sbjct: 120 CHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178

Query: 107 AQNVEEAF 114
            +N++E F
Sbjct: 179 QKNLKEVF 186

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  101 bits (254), Expect = 1e-27
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
              ID + I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +   W  + +
Sbjct: 68  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 127

Query: 60  QHANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKT 106
           +    N  ++L+G K DL              +  VS ++G   AK+ G   ++E SA  
Sbjct: 128 EFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186

Query: 107 AQN-VEEAF---IKTA 118
           ++N V + F       
Sbjct: 187 SENSVRDIFHVATLAC 202

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =   99 bits (249), Expect = 5e-27
 Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 16/129 (12%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDAR 59
            +  + + ++L +WDT+G   + ++    Y  +   LL +DI+R ET  + L  W  +  
Sbjct: 67  CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 126

Query: 60  QHANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKT 106
            +   +  ++LIG K DL    +            +S E+G   AK+ G   ++E SA T
Sbjct: 127 DYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFT 185

Query: 107 AQ-NVEEAF 114
           ++ ++   F
Sbjct: 186 SEKSIHSIF 194

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 98.7 bits (246), Expect = 9e-27
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 15/128 (11%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
            +T+  K   L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ + +
Sbjct: 58  SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK 117

Query: 60  QHANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKT 106
           ++A  N+  +LIG + DL                 +  E+G++ AKE G   ++E SA T
Sbjct: 118 EYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176

Query: 107 AQNVEEAF 114
            + ++  F
Sbjct: 177 QKGLKTVF 184

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 93.9 bits (233), Expect = 1e-23
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 18/135 (13%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
            + +D KP+ L +WDTAG E +  +    Y      L+ + +    +F+H+ + W  + R
Sbjct: 195 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254

Query: 60  QHANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKT 106
            H   N  I+L+G K DL                 ++  +G   AKE G + ++E SA T
Sbjct: 255 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313

Query: 107 AQNVEEAF---IKTA 118
            + ++  F   I+  
Sbjct: 314 QRGLKTVFDEAIRAV 328

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 79.0 bits (195), Expect = 4e-19
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
            +     +  ++   GQ  + +  +   RG  G + V D        +  S        A
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 63  NANMTI----MLIG-NKCDLAHRRAVSTEEGEQFAKEHGLIFM-EASAKTAQNVEEAFIK 116
              +T+    ++I  NK DL    A+  E         G   + EA A   + V E   +
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKE 185

Query: 117 TAATIYKKIQDG 128
            +  +  ++  G
Sbjct: 186 VSRLVLARVAGG 197

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 22/125 (17%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ-- 60
           T+  K +K Q+WD  G  S R   R YY      + V D   R+        +  ++   
Sbjct: 45  TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSEL 97

Query: 61  ------HANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQN 109
                        +++  NK D+    A+++ E          K+      + SA     
Sbjct: 98  VAMLEEEELRKAILVVFANKQDMEQ--AMTSSEMANSLGLPALKDRKWQIFKTSATKGTG 155

Query: 110 VEEAF 114
           ++EA 
Sbjct: 156 LDEAM 160

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T+  K I  ++WD  GQ   R   R Y+      + V D T R+        L + L++ 
Sbjct: 60  TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED 119

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEA 113
                    +++  NK DL    A S  E  EQ             +++S+KT   + E 
Sbjct: 120 E---LRKSLLLIFANKQDLPD--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174

Query: 114 FIKTAATIYKK 124
                  + ++
Sbjct: 175 MDWLVERLREQ 185

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 62.6 bits (153), Expect = 3e-13
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE  N     L   L + 
Sbjct: 38  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 97

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEA 113
                 +  +++  NK DL +  A++  E  ++      +          A +   + E 
Sbjct: 98  E---LRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152

Query: 114 F 114
            
Sbjct: 153 L 153

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 63.0 bits (154), Expect = 3e-13
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
            I     +  +WD  GQES RS   +YY      ++V D T RE  +     L     H 
Sbjct: 54  EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 113

Query: 63  N-ANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAFIK 116
           +     +++  NK D+     ++  E  +       K+H        A T + + +    
Sbjct: 114 DLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 171

Query: 117 TAATIYKKIQ 126
             + +  +++
Sbjct: 172 MMSRLKIRLE 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH- 61
              +  +   ++D +GQ  +R++   YY+     + V D + R         L+    H 
Sbjct: 61  KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120

Query: 62  --ANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 114
              +  + I+   NK DL    AV++ +  +       K+       + A   + ++E  
Sbjct: 121 DIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH- 61
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE     A  L+   Q  
Sbjct: 67  TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED 126

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAFIK 116
              +  +++  NK D+ +  A+   E  ++      +          A     + +    
Sbjct: 127 ELRDAVLLVFANKQDMPN--AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDW 184

Query: 117 TAATIYKK 124
            +  + K+
Sbjct: 185 LSHELSKR 192

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 62.3 bits (152), Expect = 6e-13
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 14/132 (10%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLASWLEDA 58
           T++++  KL IWD  GQ+S RS  R+Y+    G + V D   R    +    L S L + 
Sbjct: 56  TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEA 113
           R    A  T+++  NK DL    A+S     E       + H       SA T +++   
Sbjct: 116 R---LAGATLLIFANKQDLPG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170

Query: 114 FIKTAATIYKKI 125
                  I  ++
Sbjct: 171 IDWLLDDISSRV 182

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 14/121 (11%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           T+  K +KL +WD  GQ S R   R YY   A  + V D T ++  +     L   L++ 
Sbjct: 56  TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 115

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEA 113
                 +  +++  NK D     A+S  E  ++      K+     + +SA   + + E 
Sbjct: 116 E---LQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170

Query: 114 F 114
            
Sbjct: 171 L 171

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
            I     +  +WD  GQES RS   +YY      ++V D T RE  +     L     H 
Sbjct: 59  EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 118

Query: 63  N-ANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 114
           +     +++  NK D+     ++  E  +       K+H        A T + + +  
Sbjct: 119 DLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
           ++ ++  KL +WD  GQ   R   RSY+      + V D   R+ F      L   LE+ 
Sbjct: 54  SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE 113

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEA 113
           +    + + +++  NK DL    A    E  E       ++        SA T + V++ 
Sbjct: 114 K---LSCVPVLIFANKQDLLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168

Query: 114 F 114
            
Sbjct: 169 M 169

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH- 61
            I    + +++WD  GQ  FRS+   Y RG +  + + D   +E      + L +     
Sbjct: 61  KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 114
               + ++++GNK DL    A+  +E  E+      ++  +     S K   N++   
Sbjct: 121 QLQGIPVLVLGNKRDLPG--ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 8/128 (6%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 62
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE  N     L       
Sbjct: 203 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 262

Query: 63  N-ANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAFIK 116
              +  +++  NK DL +  A++  E  ++      +          A +   + E    
Sbjct: 263 ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 320

Query: 117 TAATIYKK 124
            +  +  +
Sbjct: 321 LSNQLRNQ 328

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 57.3 bits (138), Expect = 7e-11
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 18/129 (13%)

Query: 9   IKLQIWDTAGQESFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHAN 63
           +  QIWD  GQ  F   T      +RG    + V D      E    L   +  A +  N
Sbjct: 69  VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-N 127

Query: 64  ANMTIMLIGNKCDLAH-------RRAVSTEEGEQFAKE----HGLIFMEASAKTAQNVEE 112
            +M   +  +K D          +R +     +  A        L F   S     ++ E
Sbjct: 128 PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE 186

Query: 113 AFIKTAATI 121
           AF K    +
Sbjct: 187 AFSKVVQKL 195

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 23/129 (17%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
            +    IK   +D  G    R + + Y+    G + + D    E F+     L +    A
Sbjct: 61  ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA 120

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-------------IFMEASAK 105
                 ++  +++GNK D  +  AVS  E                       +FM  S  
Sbjct: 121 E---LKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFM-CSVV 174

Query: 106 TAQNVEEAF 114
                 EAF
Sbjct: 175 MRNGYLEAF 183

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 28/134 (20%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDA 58
            +    +    +D  G    R + ++Y     G + + D    E        L S + D 
Sbjct: 63  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 122

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL------------------IFM 100
                AN+ I+++GNK D     A+S E   +    +G                   +FM
Sbjct: 123 T---IANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 177

Query: 101 EASAKTAQNVEEAF 114
             S    Q   E F
Sbjct: 178 -CSVLKRQGYGEGF 190

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 6   NKPIKLQIWDTAGQESF-----RSITRSYYRGAAGALLVYDITRRETFN---HLASWLED 57
              + L +WD  GQ+ F            ++     + V+D+   E        A  L+ 
Sbjct: 49  LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108

Query: 58  ARQHANANMTIMLIGNKCDL--AHRRAVSTEEGEQFAKEH 95
            R++ + +  I ++ +K DL    +R    +   +   E 
Sbjct: 109 LRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSET 147

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 9   IKLQIWDTAGQESFRS---ITRSYYRGAAGALLVYDITR--RETFNHLASWLEDARQHAN 63
           I L + +  GQ ++      +   ++     + V D          +LA  +E A +  N
Sbjct: 46  IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-N 104

Query: 64  ANMTIMLIGNKCDL 77
            ++ I ++ +K D 
Sbjct: 105 PSINIEVLIHKVDG 118

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL--LVY------DITR-RETFNHLAS 53
             D     + + D  G    R     Y +  A  +  L++      D  +   T   L  
Sbjct: 85  AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 144

Query: 54  WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 87
            L          + I++  NK +L    A    +
Sbjct: 145 ILSITESSCENGIDILIACNKSELFT--ARPPSK 176

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 3   TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL--LVY-----DITRR--ETFNHLAS 53
             D     + + D  G    R     Y +  A  +  L++        ++   T   L  
Sbjct: 49  AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 108

Query: 54  WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 87
            L          + I++  NK +L    A    +
Sbjct: 109 ILSITESSCENGIDILIACNKSELFT--ARPPSK 140

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 28/124 (22%)

Query: 2   ITIDNKPIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETF 48
           I ID  P+ + I DTAG             + +++ I +     A   L + D T  +  
Sbjct: 47  IHIDGMPLHI-I-DTAGLREASDEVERIGIERAWQEIEQ-----ADRVLFMVDGTTTDAV 99

Query: 49  NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 108
           +    W  +      A + I ++ NK D+          G      H LI +  SA+T +
Sbjct: 100 DPAEIW-PEFIARLPAKLPITVVRNKADIT-----GETLGMSEVNGHALIRL--SARTGE 151

Query: 109 NVEE 112
            V+ 
Sbjct: 152 GVDV 155

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 5   DNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDIT-----RRETFNHLASWLEDA 58
           +N+   L + D  G ES R  +   +   A   + V D        ++    L   L D+
Sbjct: 50  NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS 109

Query: 59  RQHANANMTIMLIGNKCDLAHRRAVSTEE 87
               N+  ++++  NK D+A   A S + 
Sbjct: 110 MALKNS-PSLLIACNKQDIAM--AKSAKL 135

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 21/149 (14%), Positives = 36/149 (24%), Gaps = 29/149 (19%)

Query: 2   ITIDNKPIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETF 48
              D    +L   DTAG             + S   +       A   L + D+      
Sbjct: 276 FIHDKTMFRL-T-DTAGLREAGEEIEHEGIRRSRMKMAE-----ADLILYLLDLGTERLD 328

Query: 49  NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 108
           + L    E    H  A      + NK D A                  +     SA    
Sbjct: 329 DELTEIRELKAAHPAAKFLT--VANKLDRAANADALIRAIADGTGTEVI---GISALNGD 383

Query: 109 NVEEAFIKTAATIYKKIQDGVFDVSNESY 137
            ++   +K    +   +++          
Sbjct: 384 GIDT--LKQH--MGDLVKNLDKLHEASVL 408

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 27/134 (20%)

Query: 20  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 79
           + F S+        A  + + DI     F+   S++    + A  +  I+L+GNK DL  
Sbjct: 59  DDFLSMLHRIGESKALVVNIVDI-----FDFNGSFIPGLPRFAA-DNPILLVGNKADLLP 112

Query: 80  RRAVSTEEGE---QFAKEHGLIFMEA---SAKTAQNVEEAFIKTAATIYKKIQDGVFDVS 133
           R     +      + A+E GL  ++    SA     + +        + + I        
Sbjct: 113 RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAK--------VMEAIN------- 157

Query: 134 NESYGIKVGYGGIP 147
               G  V   G  
Sbjct: 158 RYREGGDVYVVGCT 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.94
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.94
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.93
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.93
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.93
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.93
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.93
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.93
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.92
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.92
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.92
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.92
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.92
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.92
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.92
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.92
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.92
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.92
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.91
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.91
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.91
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.91
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.91
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.91
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.91
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.91
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.91
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.91
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.91
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.91
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.91
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.91
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.91
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.91
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.91
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.91
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.91
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.91
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.9
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.9
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.9
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.9
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.9
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.9
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.9
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.9
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.9
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.89
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.89
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.89
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.89
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.89
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.89
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.89
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.89
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.89
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.89
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.89
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.88
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.88
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.88
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.88
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.87
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.86
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.85
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.85
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.85
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.84
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.84
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.74
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.84
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.84
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.84
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.84
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.83
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.83
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.83
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.82
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.82
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.81
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.81
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.8
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.8
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.78
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.78
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.77
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.76
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.75
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.72
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.7
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.7
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.69
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.69
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.68
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.67
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.65
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.64
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.64
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.64
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.62
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.61
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.61
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.6
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.6
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.59
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.59
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.58
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.56
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.56
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.55
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.55
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.55
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.54
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.54
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.53
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.53
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.52
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.51
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.51
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.5
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.48
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.48
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.48
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.47
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.47
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.47
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.46
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.45
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.45
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.44
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.43
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.43
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.42
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.4
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.4
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.4
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.38
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.38
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.37
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.33
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.33
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.33
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.32
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.31
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.3
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.28
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.27
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.27
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.23
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.22
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.2
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.17
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.16
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.15
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.15
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.13
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.13
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.11
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.09
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.07
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.02
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.01
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.98
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.96
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.94
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.93
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.86
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.85
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.84
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.83
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.81
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.79
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.68
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.67
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.61
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.55
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.5
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.44
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.39
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.37
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.36
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.31
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.26
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.25
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.54
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.39
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.7
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.65
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.33
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.93
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.33
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.78
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.31
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.3
3cwq_A	209	Para family chromosome partitioning protein; alpha	93.3
3end_A	307	Light-independent protochlorophyllide reductase ir	92.9
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	91.85
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	91.8
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	91.6
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	91.58
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	91.56
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	90.79
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	90.55
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	89.76
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	89.13
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	88.14
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	86.11
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	85.81
2xxa_A	433	Signal recognition particle protein; protein trans	85.73
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	84.89
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	82.32
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	80.79
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	80.49
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	80.05

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.7e-32  Score=200.06  Aligned_cols=125  Identities=44%  Similarity=0.749  Sum_probs=114.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|+++|+.+++.|+++++++++|||.++..+|+.+..|+..+......++|++||+||+|+...+
T Consensus        55 ~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r  134 (216)
T 4dkx_A           55 MYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR  134 (216)
T ss_dssp             EECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred             EEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence            46788899999999999999999999999999999999999999999999999999988776789999999999998888


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      .++.+++..++..++++|++|||++|.||+++|+.|.+.+.....
T Consensus       135 ~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES  179 (216)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred             cccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence            899999999999999999999999999999999999988865443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=2e-27  Score=171.79  Aligned_cols=130  Identities=42%  Similarity=0.791  Sum_probs=116.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus        50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  129 (206)
T 2bcg_Y           50 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR  129 (206)
T ss_dssp             EEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence            45788889999999999999999999999999999999999999999999999999887765678999999999997766


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD  131 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~  131 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+.++.......
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~~~  179 (206)
T 2bcg_Y          130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN  179 (206)
T ss_dssp             CSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence            77888888888889999999999999999999999999998876555433

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.7e-26  Score=169.15  Aligned_cols=130  Identities=50%  Similarity=0.852  Sum_probs=110.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++|+|||++++.+++.+..|+..+......+.|++||+||+|+....
T Consensus        55 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~  134 (223)
T 3cpj_B           55 LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR  134 (223)
T ss_dssp             EEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC
T ss_pred             EEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            45788889999999999999999999999999999999999999999999999999887755578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD  131 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~  131 (165)
                      .+..++...++...+++++++||+++.|++++|++|.+.+.++...++..
T Consensus       135 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~  184 (223)
T 3cpj_B          135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD  184 (223)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC------
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcccC
Confidence            77888888889889999999999999999999999999998876666544

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.94  E-value=8.3e-26  Score=162.77  Aligned_cols=126  Identities=33%  Similarity=0.570  Sum_probs=114.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+...
T Consensus        55 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  134 (206)
T 2bov_A           55 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK  134 (206)
T ss_dssp             EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred             EEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence            45788889999999999999999999999999999999999999999999999999887754 47999999999999776


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ..+..+++..++..++++++++||++|.|++++|++|.+.+..++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  181 (206)
T 2bov_A          135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME  181 (206)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcccc
Confidence            67888888889988999999999999999999999999999886543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.94  E-value=4.2e-25  Score=157.90  Aligned_cols=128  Identities=49%  Similarity=0.876  Sum_probs=115.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        58 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           58 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             EEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence            46788889999999999999999999999999999999999999999999999999988765679999999999998777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      .+.......++..++++++++||++|.|++++|++|.+.+.++.....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~  185 (196)
T 3tkl_A          138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA  185 (196)
T ss_dssp             CSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC----
T ss_pred             ccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence            788888899999999999999999999999999999999998766554

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.93  E-value=5.4e-25  Score=155.88  Aligned_cols=127  Identities=50%  Similarity=0.885  Sum_probs=101.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+..
T Consensus        50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  129 (183)
T 2fu5_C           50 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR  129 (183)
T ss_dssp             EEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred             EEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC
Confidence            45788889999999999999999999999999999999999999999999999999887755678999999999997767


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .+..+++..++..++++++++||++|.|++++|++|.+.+.++..+.
T Consensus       130 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~  176 (183)
T 2fu5_C          130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN  176 (183)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            77888888999999999999999999999999999999998876653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.93  E-value=9.7e-25  Score=157.58  Aligned_cols=126  Identities=48%  Similarity=0.784  Sum_probs=114.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|++||+||+|+...+
T Consensus        71 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~  150 (201)
T 2hup_A           71 LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR  150 (201)
T ss_dssp             EEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccc
Confidence            45778889999999999999999999999999999999999999999999999999887765679999999999997766


Q ss_pred             CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           82 AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      .+..+++..++...++ +++++||++|.|++++|++|.+.+.++...
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  197 (201)
T 2hup_A          151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG  197 (201)
T ss_dssp             CSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence            7888889999999999 899999999999999999999999876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.93  E-value=1.4e-24  Score=155.26  Aligned_cols=127  Identities=81%  Similarity=1.202  Sum_probs=115.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        63 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~  142 (191)
T 2a5j_A           63 VNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR  142 (191)
T ss_dssp             EEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc
Confidence            45788889999999999999999999999999999999999999999999999999887755689999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .+..++...++...+++++++||+++.|++++|++|.+.+.++..++
T Consensus       143 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  189 (191)
T 2a5j_A          143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG  189 (191)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            78888888899999999999999999999999999999998876654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.93  E-value=2.2e-25  Score=160.78  Aligned_cols=126  Identities=37%  Similarity=0.661  Sum_probs=109.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL   77 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl   77 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+.....    .+.|+++|+||+|+
T Consensus        50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  129 (207)
T 1vg8_A           50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL  129 (207)
T ss_dssp             EESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTS
T ss_pred             EEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCC
Confidence            34677788999999999999999999999999999999999999999999999988876642    36899999999999


Q ss_pred             CCCCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           78 AHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      . ...+..++...++. ..+++++++||++|.|++++|++|.+.+.++....
T Consensus       130 ~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          130 E-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV  180 (207)
T ss_dssp             S-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             c-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence            6 44566777777776 56789999999999999999999999998866544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=1.7e-24  Score=156.58  Aligned_cols=127  Identities=44%  Similarity=0.769  Sum_probs=114.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        68 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~  147 (201)
T 2ew1_A           68 VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR  147 (201)
T ss_dssp             EEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence            45788889999999999999999999999999999999999999999999999999887765678999999999997667


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+.++....
T Consensus       148 ~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~  194 (201)
T 2ew1_A          148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN  194 (201)
T ss_dssp             SSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            78888888888888999999999999999999999999998765443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.93  E-value=3.4e-24  Score=151.99  Aligned_cols=129  Identities=59%  Similarity=0.906  Sum_probs=116.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+....
T Consensus        52 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  131 (186)
T 2bme_A           52 INVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR  131 (186)
T ss_dssp             EEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence            45788889999999999999999999999999999999999999999999999988877655689999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF  130 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~  130 (165)
                      .+...+...++...+++++++||++|.|++++|+++.+.+.++..+...
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~  180 (186)
T 2bme_A          132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL  180 (186)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC-
T ss_pred             ccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCC
Confidence            7888888889999999999999999999999999999999988776543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.92  E-value=2.8e-24  Score=149.73  Aligned_cols=123  Identities=26%  Similarity=0.385  Sum_probs=97.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus        42 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  121 (166)
T 3q72_A           42 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS  121 (166)
T ss_dssp             EEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred             EEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence            46789999999999999999999999999999999999999999999999999998876543 57999999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ..+..++...++...+++++++||++|.|++++|++|.+.+.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          122 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            78888888999999999999999999999999999999988765

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.92  E-value=4.5e-24  Score=153.86  Aligned_cols=128  Identities=60%  Similarity=0.931  Sum_probs=116.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        67 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  146 (200)
T 2o52_A           67 VNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER  146 (200)
T ss_dssp             EEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence            45778889999999999999999999999999999999999999999999999998877655679999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      .+...+...++...+++++++||++|.|++++|++|.+.+.++....+
T Consensus       147 ~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~  194 (200)
T 2o52_A          147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE  194 (200)
T ss_dssp             CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            778888888899999999999999999999999999999998877654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.92  E-value=6.5e-24  Score=149.26  Aligned_cols=122  Identities=65%  Similarity=1.054  Sum_probs=111.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++...+..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        57 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  136 (179)
T 1z0f_A           57 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR  136 (179)
T ss_dssp             EEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence            45778889999999999999999999999999999999999999999999999998887765689999999999997766


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            778888889999999999999999999999999999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.92  E-value=1.2e-23  Score=151.51  Aligned_cols=127  Identities=45%  Similarity=0.781  Sum_probs=115.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus        50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  129 (203)
T 1zbd_A           50 IYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER  129 (203)
T ss_dssp             EEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred             EEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence            45678889999999999999999999999999999999999999999999999998877654578999999999997767


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .+..++...++..++++++++||++|.|++++|++|.+.+.++....
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES  176 (203)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            77888888899999999999999999999999999999998876554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.92  E-value=7.3e-24  Score=151.12  Aligned_cols=125  Identities=44%  Similarity=0.786  Sum_probs=113.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        64 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  143 (189)
T 2gf9_A           64 VYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER  143 (189)
T ss_dssp             EEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence            35678889999999999999999999999999999999999999999999999998887654578999999999997766


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      .+..++...++..++++++++||++|.|++++|++|.+.+.++.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  188 (189)
T 2gf9_A          144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN  188 (189)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            777888888999999999999999999999999999999887653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.92  E-value=8.1e-24  Score=149.29  Aligned_cols=123  Identities=41%  Similarity=0.791  Sum_probs=110.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        54 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~  133 (181)
T 2efe_B           54 LAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR  133 (181)
T ss_dssp             EEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence            45678889999999999999999999999999999999999999999999999999887765679999999999997767


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred             cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            7788888899999999999999999999999999998877553

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=147.83  Aligned_cols=126  Identities=30%  Similarity=0.404  Sum_probs=105.3

Q ss_pred             eeeCCEEEEEEEEeCCCchh--hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQES--FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~   78 (165)
                      +.+++..+.+.+|||+|++.  +..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.
T Consensus        45 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~  124 (175)
T 2nzj_A           45 LTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA  124 (175)
T ss_dssp             EEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred             EEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence            46788999999999999988  677888899999999999999999999999999988876532 478999999999997


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ....+..++...++..++++++++||++|.|++++|++|.+.+.++...
T Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  173 (175)
T 2nzj_A          125 RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD  173 (175)
T ss_dssp             TTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC-
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcc
Confidence            7677788888888888899999999999999999999999998876554

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.92  E-value=8e-24  Score=149.83  Aligned_cols=122  Identities=31%  Similarity=0.549  Sum_probs=112.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus        59 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  138 (183)
T 3kkq_A           59 TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL  138 (183)
T ss_dssp             EEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred             EEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence            46788999999999999999999999999999999999999999999999999998876543 67899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCC-CCCCHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAK-TAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~-~~~~i~~l~~~l~~~i~~  123 (165)
                      ..+..++...++..++++++++||+ ++.|++++|++|.+.+.+
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          139 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            7888999999999999999999999 999999999999998865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=8.9e-24  Score=148.98  Aligned_cols=123  Identities=47%  Similarity=0.829  Sum_probs=103.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+....
T Consensus        53 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  132 (180)
T 2g6b_A           53 LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER  132 (180)
T ss_dssp             EEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred             EEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence            36788889999999999999999999999999999999999999999999999998887765678999999999998777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .+..++...++...+++++++||+++.|++++|++|.+.+.++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          133 VVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            7788888888888999999999999999999999999988653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.92  E-value=8.6e-24  Score=152.06  Aligned_cols=123  Identities=27%  Similarity=0.404  Sum_probs=110.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+|||+|++++.. ++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+..
T Consensus        65 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  144 (195)
T 3cbq_A           65 IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR  144 (195)
T ss_dssp             EEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred             EEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence            46789999999999999998765 888999999999999999999999999999998877653 4789999999999977


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ...+..+++..++...+++++++||++|.|++++|++|++.+..+
T Consensus       145 ~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          145 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred             cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence            677888888889998999999999999999999999999988653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.92  E-value=5.1e-24  Score=148.80  Aligned_cols=123  Identities=27%  Similarity=0.404  Sum_probs=106.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+|||+|++++.. ++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+
T Consensus        44 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (169)
T 3q85_A           44 IMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR  123 (169)
T ss_dssp             EEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred             EEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence            46789999999999999999876 788889999999999999999999999999999887754 4799999999999987


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ...+..++...++...+++++++||++|.|++++|+++.+.+..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            778889999999999999999999999999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.92  E-value=1.6e-23  Score=148.57  Aligned_cols=126  Identities=33%  Similarity=0.600  Sum_probs=110.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++.+..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+. .
T Consensus        45 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~  123 (189)
T 4dsu_A           45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-S  123 (189)
T ss_dssp             EEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-S
T ss_pred             EEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-c
Confidence            45788999999999999999999999999999999999999999999999999998887654 579999999999996 3


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .....+....++..++++++++||++|.|++++|++|.+.+.+.....
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  171 (189)
T 4dsu_A          124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKM  171 (189)
T ss_dssp             CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence            456778888899999999999999999999999999999998766543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.92  E-value=1e-23  Score=148.54  Aligned_cols=126  Identities=41%  Similarity=0.733  Sum_probs=115.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+....
T Consensus        51 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~  129 (181)
T 3tw8_B           51 VEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERK  129 (181)
T ss_dssp             EEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGC
T ss_pred             EEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhc
Confidence            4578888999999999999999999999999999999999999999999999999987765 579999999999998777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .+...+...++...+++++++||++|.|++++|++|.+.+.+...+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN  176 (181)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            78888888999999999999999999999999999999998876554

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.9e-24  Score=154.56  Aligned_cols=125  Identities=44%  Similarity=0.774  Sum_probs=113.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+..
T Consensus        65 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  144 (191)
T 3dz8_A           65 VYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER  144 (191)
T ss_dssp             EEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence            34566778899999999999999999999999999999999999999999999999987765689999999999997777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+.++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          145 VVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS  189 (191)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            788888999999999999999999999999999999999987654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.92  E-value=6.4e-25  Score=159.26  Aligned_cols=125  Identities=29%  Similarity=0.615  Sum_probs=105.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+++.+. .|+..+.... .+.|++||+||+|+...
T Consensus        50 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           50 VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             EECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTC
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhC
Confidence            457888899999999999999999999999999999999999999999987 7888887765 47899999999998543


Q ss_pred             CC--------CCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           81 RA--------VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ~~--------~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ..        +...++..++..+++ +++++||++|+|++++|++|.+.+.+....
T Consensus       129 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             HHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred             ccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence            32        367788888888886 899999999999999999999998765433

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.92  E-value=4.1e-24  Score=151.08  Aligned_cols=124  Identities=31%  Similarity=0.453  Sum_probs=111.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus        47 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  126 (181)
T 3t5g_A           47 ITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME  126 (181)
T ss_dssp             EEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred             EEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence            46788999999999999999999999999999999999999999999999999998876654 57899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ..+..++...++..++++++++||++|.|++++|++|.+.+.++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             ceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            788899999999999999999999999999999999999887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=150.26  Aligned_cols=126  Identities=45%  Similarity=0.817  Sum_probs=113.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+....
T Consensus        67 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~  146 (193)
T 2oil_A           67 VMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR  146 (193)
T ss_dssp             EEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccc
Confidence            35677889999999999999999999999999999999999999999999999998877655678999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      .+...+...++...+++++++||++|.|++++|++|.+.+.++..+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  192 (193)
T 2oil_A          147 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK  192 (193)
T ss_dssp             CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            7778888888888999999999999999999999999999876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.91  E-value=1.6e-23  Score=147.44  Aligned_cols=126  Identities=34%  Similarity=0.586  Sum_probs=112.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+...
T Consensus        50 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  129 (181)
T 2fn4_A           50 CSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ  129 (181)
T ss_dssp             EEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            46788889999999999999999999999999999999999999999999999988855443 57899999999999776


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ..+...+...++...+++++++||++|.|++++|++|.+.+.+....
T Consensus       130 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~  176 (181)
T 2fn4_A          130 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ  176 (181)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred             cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            77888888888888999999999999999999999999998876543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.91  E-value=1.5e-23  Score=146.05  Aligned_cols=120  Identities=44%  Similarity=0.824  Sum_probs=108.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+....
T Consensus        48 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~  127 (170)
T 1r2q_A           48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR  127 (170)
T ss_dssp             EEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence            45678889999999999999999999999999999999999999999999999998887755689999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          128 AVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7778888888888999999999999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.91  E-value=5.9e-24  Score=148.48  Aligned_cols=121  Identities=36%  Similarity=0.701  Sum_probs=103.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        48 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  127 (170)
T 1z08_A           48 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER  127 (170)
T ss_dssp             EESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC
T ss_pred             EEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence            45678888999999999999999999999999999999999999999999999988877654578999999999997767


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             CSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            78888888999999999999999999999999999998875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.91  E-value=2.8e-23  Score=147.00  Aligned_cols=126  Identities=33%  Similarity=0.570  Sum_probs=114.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+...
T Consensus        59 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  138 (187)
T 2a9k_A           59 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK  138 (187)
T ss_dssp             EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred             EEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            45788889999999999999999999999999999999999999999999999998887764 47999999999999776


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ..+...+...++..++++++++||+++.|++++|++|.+.+.+++..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  185 (187)
T 2a9k_A          139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME  185 (187)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred             CccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            67788888889999999999999999999999999999999876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.91  E-value=1.4e-23  Score=145.91  Aligned_cols=122  Identities=34%  Similarity=0.580  Sum_probs=108.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus        45 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  124 (168)
T 1u8z_A           45 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             EEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred             EEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence            45788889999999999999999999999999999999999999999999999998887664 47999999999999776


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..+..++...++...+++++++||++|.|++++|++|.+.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            6788888888998899999999999999999999999988753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=150.27  Aligned_cols=123  Identities=47%  Similarity=0.816  Sum_probs=110.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        68 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~  147 (192)
T 2il1_A           68 VELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR  147 (192)
T ss_dssp             EEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence            45788889999999999999999999999999999999999999999999999988877765679999999999997766


Q ss_pred             CCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .+..++...++... +++++++||++|.|++++|++|.+.+.++
T Consensus       148 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          148 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             CSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            77888888888774 78899999999999999999999988653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.91  E-value=2.3e-23  Score=149.71  Aligned_cols=125  Identities=26%  Similarity=0.513  Sum_probs=110.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-   79 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.. 
T Consensus        61 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           61 VSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED  139 (201)
T ss_dssp             EEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGC
T ss_pred             EEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhc
Confidence            457888899999999999999999999999999999999999999999987 6888887765 4799999999999864 


Q ss_pred             -----------CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           80 -----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                                 ...+..++...++..+++ +++++||++|.|++++|++|.+.+.+....
T Consensus       140 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             hhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence                       245677888888888887 899999999999999999999999876554

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.9e-23  Score=152.46  Aligned_cols=125  Identities=25%  Similarity=0.359  Sum_probs=109.1

Q ss_pred             eeeCCEEEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+|||+|++. +..+.+.+++.+|++|+|||+++..+|+.+..|+..+..... .++|++||+||+|+..
T Consensus        80 i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~  159 (211)
T 2g3y_A           80 LMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR  159 (211)
T ss_dssp             EEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred             EEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence            56889999999999999987 566778889999999999999999999999999887765422 5799999999999976


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      .+.+..++...++..++++++++||++|.|++++|++|.+.+..+..
T Consensus       160 ~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~~  206 (211)
T 2g3y_A          160 CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD  206 (211)
T ss_dssp             GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHCC
T ss_pred             CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            66778888888888889999999999999999999999998866543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.91  E-value=1.1e-23  Score=146.91  Aligned_cols=122  Identities=49%  Similarity=0.871  Sum_probs=109.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+......+.|+++|+||+|+ ...
T Consensus        45 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~  123 (170)
T 1g16_A           45 VDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR  123 (170)
T ss_dssp             EESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTC
T ss_pred             EEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcC
Confidence            3467778899999999999999999999999999999999999999999999999888776567899999999999 445


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            5677888888888999999999999999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=5.2e-24  Score=152.56  Aligned_cols=121  Identities=31%  Similarity=0.457  Sum_probs=105.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+.....  .+.|+++|+||+|+..
T Consensus        49 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           49 ISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             EEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             EEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            35678888999999999999999999999999999999999999999999888877766542  3689999999999964


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                       ..+...+...++..++++++++||++|.|++++|++|.+.+..
T Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          129 -REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             -CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred             -cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence             4567778888888889999999999999999999999886643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=3e-23  Score=144.60  Aligned_cols=120  Identities=43%  Similarity=0.813  Sum_probs=108.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+... 
T Consensus        45 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  124 (170)
T 1ek0_A           45 VTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG  124 (170)
T ss_dssp             EEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred             EEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence            4578889999999999999999999999999999999999999999999999999888776567999999999998654 


Q ss_pred             --CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 --RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                        ..+.......++...+++++++||++|.|++++|++|.+.+
T Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence              56777888888888999999999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.91  E-value=3.1e-23  Score=147.79  Aligned_cols=120  Identities=16%  Similarity=0.328  Sum_probs=106.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC--
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA--   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--   78 (165)
                      +.+++..+.+++|||+|++++.     +++++|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+.  
T Consensus        60 ~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  134 (184)
T 3ihw_A           60 IVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAA  134 (184)
T ss_dssp             EEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTT
T ss_pred             EEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            5788999999999999999877     78899999999999999999999999999987654 578999999999994  


Q ss_pred             CCCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           79 HRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ....+..+++..++..++ ++++++||++|.|++++|++|.+.+.+++.
T Consensus       135 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          135 NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             BCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             cccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence            456688888999999887 889999999999999999999999887643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=8.2e-23  Score=147.86  Aligned_cols=127  Identities=46%  Similarity=0.842  Sum_probs=113.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+ ...
T Consensus        62 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~  140 (213)
T 3cph_A           62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR  140 (213)
T ss_dssp             EEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSC
T ss_pred             EEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-ccc
Confidence            4567888999999999999999999999999999999999999999999999999888776557899999999999 445


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      .+...+...++..++++++++||+++.|++++|++|.+.+.++.....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  188 (213)
T 3cph_A          141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK  188 (213)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTS
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence            567778888888889999999999999999999999999988766554

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.91  E-value=2.2e-23  Score=146.73  Aligned_cols=122  Identities=36%  Similarity=0.549  Sum_probs=106.4

Q ss_pred             eeCC-EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCe-EEEEeeCCCCC
Q 031132            3 TIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMT-IMLIGNKCDLA   78 (165)
Q Consensus         3 ~i~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p-~ivv~nK~Dl~   78 (165)
                      .+++ ..+.+++|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.....  .+.| +++|+||+|+.
T Consensus        49 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~  128 (178)
T 2hxs_A           49 TLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE  128 (178)
T ss_dssp             EETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred             EeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence            4554 678999999999999999999999999999999999999999999999988876432  2345 89999999997


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ....+..++...++...+++++++||++|.|++++|++|.+.+.+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          129 HMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             GGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred             cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            6667788888889988999999999999999999999999887543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=150.54  Aligned_cols=122  Identities=40%  Similarity=0.705  Sum_probs=107.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC---
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA---   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~---   78 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.   
T Consensus        70 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~  149 (199)
T 2p5s_A           70 LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA  149 (199)
T ss_dssp             EEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHH
T ss_pred             EEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence            46788899999999999999999999999999999999999999999999999998877655578999999999985   


Q ss_pred             ---CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           79 ---HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        79 ---~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                         ....+..+....++...+++++++||++|.|++++|++|.+.+.+
T Consensus       150 ~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             HHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             ccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence               345677888888888899999999999999999999999988753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.91  E-value=4.7e-23  Score=146.57  Aligned_cols=121  Identities=38%  Similarity=0.677  Sum_probs=110.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.+.+|||+|++++..++..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.....+..+
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  148 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE  148 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence            78999999999999999999999999999999999999999999999998887764 57899999999999776677888


Q ss_pred             HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           87 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      ++..++...+++++++||+++.|++++|++|.+.+.++....
T Consensus       149 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            888899889999999999999999999999999998866543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.91  E-value=1.2e-23  Score=153.27  Aligned_cols=124  Identities=27%  Similarity=0.519  Sum_probs=108.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++. +..|+..+.... .+.|++||+||+|+...
T Consensus        68 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~  146 (214)
T 3q3j_B           68 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD  146 (214)
T ss_dssp             EEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGC
T ss_pred             EEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence            4567888999999999999999999999999999999999999999998 688999888775 57999999999999652


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCC-HHHHHHHHHHHHHHHHh
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQN-VEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~l~~~l~~~i~~~~~  126 (165)
                                  +.+..+++..++..+++ ++++|||++|.| ++++|++|.+.+..+..
T Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             HHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             hhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence                        56888899999999999 899999999998 99999999998876544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.91  E-value=1.8e-23  Score=149.24  Aligned_cols=121  Identities=31%  Similarity=0.518  Sum_probs=105.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~   78 (165)
                      +.+++..+.+++|||+|++++..+ ..+++++|++++|||+++..+++.+..|+..+.....   .+.|+++|+||+|+.
T Consensus        62 ~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  140 (187)
T 3c5c_A           62 ETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA  140 (187)
T ss_dssp             EEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred             EEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence            457889999999999999988775 6799999999999999999999999999998877642   478999999999997


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEecC-CCCCCHHHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGLIFMEASA-KTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~vSa-~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..+.+..+++..++..++++++++|| ++|.|++++|+.|.+.+.+
T Consensus       141 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          141 QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             GGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             hcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence            76778888899999999999999999 8999999999999988753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.91  E-value=8.8e-23  Score=142.34  Aligned_cols=120  Identities=43%  Similarity=0.776  Sum_probs=109.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+........|+++|+||+|+....
T Consensus        48 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~  127 (170)
T 1z0j_A           48 VQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR  127 (170)
T ss_dssp             EEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred             EEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence            45678889999999999999999999999999999999999999999999999998887655678999999999997766


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+..++...++...+++++++||++|.|++++|++|.+.+
T Consensus       128 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          128 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            7788888888888999999999999999999999998765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.91  E-value=3.2e-23  Score=148.35  Aligned_cols=122  Identities=25%  Similarity=0.550  Sum_probs=108.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus        64 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  142 (194)
T 3reg_A           64 MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKD  142 (194)
T ss_dssp             EEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence            46788999999999999999999999999999999999999999999997 66877777654 57899999999999643


Q ss_pred             --CCCCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           81 --RAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                        ..+..++...++..++++ ++++||++|.|++++|++|.+.+.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             TTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             CCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence              567888899999999998 99999999999999999999988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.91  E-value=3.2e-23  Score=149.23  Aligned_cols=126  Identities=27%  Similarity=0.543  Sum_probs=102.5

Q ss_pred             eeeCCE--EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCC
Q 031132            2 ITIDNK--PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCD   76 (165)
Q Consensus         2 ~~i~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D   76 (165)
                      +.+++.  .+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|
T Consensus        64 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D  143 (208)
T 2yc2_C           64 VTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTD  143 (208)
T ss_dssp             EECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-
T ss_pred             EEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcc
Confidence            345555  78999999999999999999999999999999999999999999999999988764   5789999999999


Q ss_pred             CCC-CCCCCHHHHHHHHHHcCCeEEEecCCC-CCCHHHHHHHHHHHHHHHHhc
Q 031132           77 LAH-RRAVSTEEGEQFAKEHGLIFMEASAKT-AQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        77 l~~-~~~~~~~~~~~~~~~~~~~~~~vSa~~-~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      +.. ...+..+++..++..++++++++||++ +.|++++|++|.+.+.+....
T Consensus       144 l~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          144 LPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             ------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred             cchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            976 667888889999999999999999999 999999999999988876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.91  E-value=2.9e-23  Score=145.96  Aligned_cols=121  Identities=45%  Similarity=0.794  Sum_probs=109.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+....
T Consensus        56 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  135 (179)
T 2y8e_A           56 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR  135 (179)
T ss_dssp             EEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred             EEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence            45788889999999999999999999999999999999999999999999999998877655679999999999997767


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .+...+...++...+++++++||++|.|++++|++|.+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          136 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            77888888888889999999999999999999999987653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.91  E-value=3.1e-23  Score=143.95  Aligned_cols=122  Identities=34%  Similarity=0.574  Sum_probs=110.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus        44 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  123 (167)
T 1kao_A           44 IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE  123 (167)
T ss_dssp             EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence            46788889999999999999999999999999999999999999999999999988877654 57999999999999776


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..+...+...++...+++++++||++|.|++++|++|.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            7778888888888899999999999999999999999987753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.91  E-value=3.2e-23  Score=144.34  Aligned_cols=121  Identities=37%  Similarity=0.642  Sum_probs=109.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++++|||+++..+++.+..|+..+.... .+.|+++|+||+|+....
T Consensus        47 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~  125 (168)
T 1z2a_A           47 IQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS  125 (168)
T ss_dssp             EEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGC
T ss_pred             EEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCccc
Confidence            4567888999999999999999999999999999999999999999999999998887765 578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+..++...++...+++++++||+++.|++++|++|.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             SSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            777888888999999999999999999999999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=7.8e-24  Score=152.52  Aligned_cols=126  Identities=29%  Similarity=0.505  Sum_probs=107.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++.+..|+..+..... .++|+++|+||+|+...
T Consensus        65 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  144 (201)
T 3oes_A           65 VTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE  144 (201)
T ss_dssp             EC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred             EEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence            34567788999999999999999999999999999999999999999999999999876643 57899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ..+...+...++...+++++++||++|.|++++|++|.+.+.+....
T Consensus       145 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred             cccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence            78888889999999999999999999999999999999998775444

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.91  E-value=1.8e-23  Score=152.07  Aligned_cols=120  Identities=39%  Similarity=0.708  Sum_probs=108.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.+.||||+|++++..++..+++.+|++|||||+++..++..+..|+..+..... .+.|+++|+||+|+.....+...
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~  162 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER  162 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence            78899999999999999999999999999999999999999999999887765543 57899999999999776677888


Q ss_pred             HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           87 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        87 ~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      +...++...+++++++||+++.|++++|++|.+.+.++...
T Consensus       163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence            88899999999999999999999999999999999886554

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.91  E-value=3.6e-23  Score=143.92  Aligned_cols=121  Identities=36%  Similarity=0.605  Sum_probs=108.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.
T Consensus        44 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  123 (167)
T 1c1y_A           44 VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             EESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred             EEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence            34677788999999999999999999999999999999999999999999999988877643 57999999999999776


Q ss_pred             CCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..+..++...++..+ +++++++||++|.|++++|++|.+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence            777888888888887 789999999999999999999988763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.1e-23  Score=149.32  Aligned_cols=122  Identities=40%  Similarity=0.736  Sum_probs=109.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        65 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~  144 (192)
T 2fg5_A           65 VPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR  144 (192)
T ss_dssp             EECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence            34566788999999999999999999999999999999999999999999999999887755679999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+..++...++...+++++++||+++.|++++|++|.+.+.+
T Consensus       145 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             CSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            778888999999999999999999999999999999887644

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.90  E-value=1.4e-23  Score=149.78  Aligned_cols=122  Identities=18%  Similarity=0.285  Sum_probs=105.9

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT------RRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+++..+.+++|||+|++++..+++.+++++|++|+|||++      +..++..+..|+..+... ..+.|+++|+||+|
T Consensus        68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~NK~D  146 (198)
T 3t1o_A           68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVNKRD  146 (198)
T ss_dssp             CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEECTT
T ss_pred             cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEEchh
Confidence            56788899999999999999999999999999999999999      556777787787776322 25799999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           77 LAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      +..  .+..+++..++...++ +++++||++|.|++++|++|.+.+.++..+
T Consensus       147 l~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          147 LPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             STT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            965  3678888888888999 899999999999999999999999887654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=6.8e-23  Score=146.16  Aligned_cols=122  Identities=48%  Similarity=0.825  Sum_probs=109.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .
T Consensus        57 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~  135 (195)
T 1x3s_A           57 ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N  135 (195)
T ss_dssp             EEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-S
T ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-c
Confidence            45788889999999999999999999999999999999999999999999999988876643 578999999999994 4


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ..+...+...++...+++++++||+++.|++++|++|.+.+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            45677888888989999999999999999999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=6.5e-23  Score=147.04  Aligned_cols=123  Identities=38%  Similarity=0.549  Sum_probs=111.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++. ..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...
T Consensus        69 ~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~  147 (196)
T 2atv_A           69 ATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS  147 (196)
T ss_dssp             EEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred             EEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence            46788899999999999998 78899999999999999999999999999999988877653 57899999999999776


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~l~~~l~~~i~~~~  125 (165)
                      ..+..++...++..++++++++||++|. |++++|++|.+.+.++.
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          148 RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             CCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            7788888888998899999999999999 99999999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.90  E-value=8.1e-23  Score=144.02  Aligned_cols=122  Identities=14%  Similarity=0.276  Sum_probs=104.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~   78 (165)
                      +.+++..+.+++|||+|+++     ..+++++|++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.
T Consensus        47 ~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           47 MLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             EEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             EEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            56788999999999999987     4678899999999999999999999998766655432   478999999999994


Q ss_pred             --CCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           79 --HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        79 --~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                        ..+.+..+++..++... +++++++||++|.|++++|++|.+.+.+....+
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhhh
Confidence              44567888888888776 688999999999999999999999998866543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.90  E-value=6.4e-23  Score=146.21  Aligned_cols=121  Identities=40%  Similarity=0.758  Sum_probs=107.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+|||+|++++. .++..+++++|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+..
T Consensus        62 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  141 (189)
T 1z06_A           62 VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS  141 (189)
T ss_dssp             EEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred             EEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            4578888999999999999998 8999999999999999999999999999999999887753 6799999999999977


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCC---CCHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTA---QNVEEAFIKTAATIY  122 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~---~~i~~l~~~l~~~i~  122 (165)
                      ...+..++...++...+++++++||+++   +|++++|++|.+.+.
T Consensus       142 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          142 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            6677888888899999999999999999   999999999988764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=8.2e-23  Score=146.11  Aligned_cols=120  Identities=27%  Similarity=0.522  Sum_probs=106.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus        59 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           59 VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             EESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTC
T ss_pred             EEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence            456778899999999999999999999999999999999999999999987 7888887765 47899999999999653


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                                  +.+..++...++..+++ +++++||++|+|++++|++|.+.++
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence                        35777888889988887 8999999999999999999998875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.90  E-value=1.7e-22  Score=141.98  Aligned_cols=121  Identities=34%  Similarity=0.662  Sum_probs=107.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL   77 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl   77 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..++..+..|+..+.....    .+.|+++|+||+|+
T Consensus        49 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  128 (177)
T 1wms_A           49 LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI  128 (177)
T ss_dssp             EEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred             EEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcc
Confidence            45788889999999999999999999999999999999999999999999999988876653    57899999999999


Q ss_pred             CCCCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      . ...+..++...++. ..+++++++||++|.|++++|++|.+.+.+
T Consensus       129 ~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          129 S-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             S-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             c-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            6 45577788888877 567889999999999999999999998865

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.90  E-value=4.3e-22  Score=141.79  Aligned_cols=124  Identities=35%  Similarity=0.592  Sum_probs=99.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.. 
T Consensus        62 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-  140 (190)
T 3con_A           62 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-  140 (190)
T ss_dssp             EEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-
T ss_pred             EEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-
Confidence            45788889999999999999999999999999999999999999999999999988877654 4789999999999865 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      .....++...++...+++++++||+++.|++++|++|.+.+.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM  186 (190)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567788888898999999999999999999999999999876544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.90  E-value=6e-23  Score=145.28  Aligned_cols=121  Identities=28%  Similarity=0.578  Sum_probs=106.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus        46 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD  124 (186)
T ss_dssp             EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTC
T ss_pred             EEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEccccccc
Confidence            467889999999999999999999999999999999999999999999987 6888887665 47899999999998543


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                                  ..+..++...++...+. +++++||++|.|++++|++|.+.+.+
T Consensus       125 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             chhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence                        45677788888888887 89999999999999999999988753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.89  E-value=3.4e-22  Score=144.01  Aligned_cols=120  Identities=30%  Similarity=0.565  Sum_probs=106.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+ ..|+..+.... .+.|+++|+||+|+...
T Consensus        66 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  144 (201)
T 2gco_A           66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD  144 (201)
T ss_dssp             EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTC
T ss_pred             EEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcC
Confidence            45788899999999999999999999999999999999999999999988 56777776654 57899999999999654


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                                  ..+..++...++...+. +++++||++|.|++++|++|.+.++
T Consensus       145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             HHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence                        45677788888888888 7999999999999999999998775

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.89  E-value=5.2e-22  Score=141.99  Aligned_cols=115  Identities=39%  Similarity=0.710  Sum_probs=104.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      +.+.+|||+|++.+...+..+++.+|++|+|||++++.++..+..|+..+....  +.|+++|+||+| .....+..+++
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~~~  169 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEV  169 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHHHH
Confidence            789999999999999999999999999999999999999999999999888774  489999999999 45566788889


Q ss_pred             HHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           89 EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        89 ~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ..++...+++++++||+++.|++++|++|.+.+.++..
T Consensus       170 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999887643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=147.74  Aligned_cols=122  Identities=28%  Similarity=0.612  Sum_probs=93.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...
T Consensus        75 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  153 (214)
T 2j1l_A           75 LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD  153 (214)
T ss_dssp             EEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred             EEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence            467889999999999999999999999999999999999999999999987 6888887665 57899999999999653


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                                  ..+..+++..++...++ +++++||++|.|++++|++|.+.+++.
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             chhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence                        25677788888888887 899999999999999999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.89  E-value=7.2e-23  Score=145.46  Aligned_cols=121  Identities=27%  Similarity=0.552  Sum_probs=106.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus        48 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~  126 (184)
T 1m7b_A           48 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD  126 (184)
T ss_dssp             EECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGC
T ss_pred             EEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcc
Confidence            35678889999999999999999999999999999999999999999988 67888887664 57899999999999642


Q ss_pred             ------------CCCCHHHHHHHHHHcC-CeEEEecCC-CCCCHHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHG-LIFMEASAK-TAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~-~~~~~vSa~-~~~~i~~l~~~l~~~i~~  123 (165)
                                  ..+..+++..++..++ .+++++||+ ++.|++++|+.+.+.+++
T Consensus       127 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence                        4577888888888887 689999999 689999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.89  E-value=3.7e-22  Score=143.16  Aligned_cols=125  Identities=25%  Similarity=0.370  Sum_probs=106.7

Q ss_pred             eeeCCEEEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+|||+|+.. ++.++..+++.+|++++|||+++..+|+.+..|+..+..... .+.|+++|+||+|+..
T Consensus        49 ~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           49 LMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR  128 (192)
T ss_dssp             EEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred             EEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence            56789999999999999887 566788889999999999999999999999999887766532 5789999999999976


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      .+.+...+...++...+++++++||++|.|++++|+++.+.+..+..
T Consensus       129 ~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~~  175 (192)
T 2cjw_A          129 XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRD  175 (192)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHHS
T ss_pred             cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhcc
Confidence            66677777888888889999999999999999999999999876553

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.89  E-value=6.6e-22  Score=136.92  Aligned_cols=120  Identities=33%  Similarity=0.593  Sum_probs=107.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++++||+|+.. 
T Consensus        44 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-  122 (166)
T 2ce2_X           44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-  122 (166)
T ss_dssp             EEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-
T ss_pred             EEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-
Confidence            45778889999999999999999999999999999999999999999999999988877653 4799999999999865 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..........++..++++++++||+++.|++++|++|.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            456677888888889999999999999999999999998875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.89  E-value=2.5e-22  Score=141.43  Aligned_cols=120  Identities=36%  Similarity=0.629  Sum_probs=95.3

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCC-C
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAH-R   80 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~-~   80 (165)
                      +..+.+.+|||+|++.+..++..+++++|++|+|||+++..+++.+..|+..+.....    .+.|+++|+||+|+.. .
T Consensus        55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  134 (182)
T 1ky3_A           55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK  134 (182)
T ss_dssp             SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG
T ss_pred             CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc
Confidence            5567899999999999999999999999999999999999999999999988876653    5789999999999953 3


Q ss_pred             CCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ..+...+...++. ..+.+++++||++|.|++++|++|.+.+.++.
T Consensus       135 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          135 KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             CCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            4567777888877 45788999999999999999999999988754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=3.4e-22  Score=144.65  Aligned_cols=122  Identities=28%  Similarity=0.555  Sum_probs=106.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+ ..|+..+.... .+.|+++|+||+|+...
T Consensus        66 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A           66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD  144 (207)
T ss_dssp             EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred             EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence            45788889999999999999999999999999999999999999999988 56877776654 57899999999999643


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                                  ..+...+...++...+. +++++||++|.|++++|++|.+.++++
T Consensus       145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             ccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                        34677778888888887 799999999999999999999988754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.89  E-value=1.2e-22  Score=147.18  Aligned_cols=121  Identities=27%  Similarity=0.557  Sum_probs=106.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-   79 (165)
                      +.+++..+.+.+|||+|+++|..++..+++++|++|+|||+++..+++.+ ..|+..+.... .+.|+++|+||+|+.. 
T Consensus        69 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~  147 (205)
T 1gwn_A           69 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD  147 (205)
T ss_dssp             EESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGC
T ss_pred             EEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccc
Confidence            35677889999999999999999999999999999999999999999998 67888887665 5789999999999964 


Q ss_pred             -----------CCCCCHHHHHHHHHHcC-CeEEEecCC-CCCCHHHHHHHHHHHHHH
Q 031132           80 -----------RRAVSTEEGEQFAKEHG-LIFMEASAK-TAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~vSa~-~~~~i~~l~~~l~~~i~~  123 (165)
                                 ...+..+++..++..++ ++++++||+ ++.|++++|+.|.+.+++
T Consensus       148 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence                       24577788888888887 689999999 689999999999998875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.89  E-value=5e-23  Score=145.32  Aligned_cols=120  Identities=27%  Similarity=0.602  Sum_probs=98.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...
T Consensus        49 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             CC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTC
T ss_pred             EEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcC
Confidence            346778888999999999999999999999999999999999999999987 6888887765 47899999999998543


Q ss_pred             CC----------CCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RA----------VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~----------~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..          +...+...++..++. +++++||++|.|++++|++|.+.++
T Consensus       128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             cccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            32          467778888888886 8999999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=2.5e-22  Score=140.12  Aligned_cols=120  Identities=34%  Similarity=0.483  Sum_probs=106.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++..+.+.+|||+|++++..++..+++.+|++++|||++++.+++.+..|+..+.....  .+.|+++|+||+|+..
T Consensus        44 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~  123 (172)
T 2erx_A           44 ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  123 (172)
T ss_dssp             EEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence            35678888999999999999999999999999999999999999999999998888776542  4689999999999977


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...+...+...++...+++++++||++|.|++++|++|.+.+
T Consensus       124 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            667777888888888899999999999999999999998754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.88  E-value=3.5e-22  Score=145.32  Aligned_cols=122  Identities=32%  Similarity=0.507  Sum_probs=106.5

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      +..+.+.+|||+|++.+..++..++.++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.....+..
T Consensus        58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  137 (218)
T 4djt_A           58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK  137 (218)
T ss_dssp             SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH
T ss_pred             CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence            44478999999999999999999999999999999999999999999999999877656689999999999977667788


Q ss_pred             HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      .....++...+++++++||++|.|++++|++|.+.+..+...
T Consensus       138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence            888888888899999999999999999999999988765443

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.88  E-value=4.4e-24  Score=153.64  Aligned_cols=122  Identities=51%  Similarity=0.891  Sum_probs=99.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+....
T Consensus        75 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~  154 (199)
T 3l0i_B           75 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK  154 (199)
T ss_dssp             EEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred             EEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccc
Confidence            46788889999999999999999999999999999999999999999999999999877655679999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+...+...++..++++++++||++|.|++++|++|.+.+.+
T Consensus       155 ~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             CCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             cCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            666666777888889999999999999999999999876643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.88  E-value=2.6e-22  Score=145.09  Aligned_cols=119  Identities=28%  Similarity=0.582  Sum_probs=103.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++++..++..+++++|++++|||+++..++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus        71 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A           71 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD  149 (204)
T ss_dssp             EECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTC
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccc
Confidence            467788899999999999999999999999999999999999999999987 6888877765 57999999999998643


Q ss_pred             C------------CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 R------------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~------------~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .            .+...+...++...+. +++++||++|+|++++|++|.+.+
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             hhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            2            2677788888888886 499999999999999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.88  E-value=8.5e-23  Score=141.89  Aligned_cols=119  Identities=19%  Similarity=0.356  Sum_probs=94.0

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ++...+.+.+|||+|+++++.++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+...  
T Consensus        39 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--  116 (164)
T 1r8s_A           39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--  116 (164)
T ss_dssp             EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--
T ss_pred             EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--
Confidence            444557899999999999999999999999999999999999999999999888765432 57899999999999643  


Q ss_pred             CCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        83 ~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ....+.....     ...+++++++||++|.|++++|++|.+.+.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence            2333332211     11345799999999999999999999887643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.87  E-value=2.4e-22  Score=143.82  Aligned_cols=122  Identities=16%  Similarity=0.334  Sum_probs=98.3

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--------CCCeEEEEeeCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--------ANMTIMLIGNKC   75 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ivv~nK~   75 (165)
                      +++..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+.....        .+.|+++|+||+
T Consensus        58 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~  137 (199)
T 4bas_A           58 FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKM  137 (199)
T ss_dssp             EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECT
T ss_pred             EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECc
Confidence            345567899999999999999999999999999999999999999999999888765521        278999999999


Q ss_pred             CCCCCCCCCHHHHHH-H-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           76 DLAHRRAVSTEEGEQ-F-----AKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        76 Dl~~~~~~~~~~~~~-~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      |+....  ...+... +     +...+++++++||++|.|++++|++|.+.+.++...
T Consensus       138 Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          138 DAAGAK--TAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             TSTTCC--CHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCC--CHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence            996542  2222221 1     134577899999999999999999999998876543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.87  E-value=1.1e-21  Score=141.32  Aligned_cols=115  Identities=23%  Similarity=0.295  Sum_probs=93.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++  +.+.+|||+|+++++.++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.. 
T Consensus        64 ~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-  140 (198)
T 1f6b_A           64 LTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-  140 (198)
T ss_dssp             EEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-
T ss_pred             EEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-
Confidence            34555  6799999999999999999999999999999999999999999999988876532 5799999999999964 


Q ss_pred             CCCCHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKE-----------------HGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ~~~~~~~~~~~~~~-----------------~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                       .++.+++..++..                 .+++++++||++|+|++++|++|.+.
T Consensus       141 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          141 -AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             -CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             -cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence             4566666665542                 24569999999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.87  E-value=9.8e-22  Score=143.44  Aligned_cols=121  Identities=31%  Similarity=0.601  Sum_probs=105.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++|+|||+++..++..+..|+..+.... .+.|+++|+||+|+.+..
T Consensus        57 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~  135 (221)
T 3gj0_A           57 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK  135 (221)
T ss_dssp             EEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS
T ss_pred             EEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc
Confidence            4567889999999999999999999999999999999999999999999999999998775 578999999999996543


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      . . .+...++...+++++++||++|.|++++|++|.+.+....
T Consensus       136 ~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          136 V-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             S-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             c-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            2 2 2445567778999999999999999999999999887643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.86  E-value=2.3e-21  Score=138.61  Aligned_cols=115  Identities=23%  Similarity=0.296  Sum_probs=95.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++  +.+.+|||+|+++++.++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. 
T Consensus        62 ~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-  138 (190)
T 1m2o_B           62 LAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-  138 (190)
T ss_dssp             EEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-
T ss_pred             EEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-
Confidence            34555  6789999999999999999999999999999999999999999999988876432 5789999999999965 


Q ss_pred             CCCCHHHHHHHHHH------------cCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKE------------HGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ~~~~~~~~~~~~~~------------~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                       .+..++....+..            .+++++++||++|+|++++|++|.+.
T Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          139 -AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             -CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             -CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence             4556666554432            34579999999999999999998754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.85  E-value=1.1e-20  Score=145.07  Aligned_cols=121  Identities=28%  Similarity=0.571  Sum_probs=107.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...
T Consensus       196 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD  274 (332)
T ss_dssp             EEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTC
T ss_pred             EEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccc
Confidence            467889999999999999999999999999999999999999999999887 6877777665 47999999999998542


Q ss_pred             ------------CCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                                  ..+...+...++...++ +++++||++|.|++++|+.|.+.+++
T Consensus       275 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence                        45778888889999987 89999999999999999999988764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.85  E-value=6.8e-20  Score=131.71  Aligned_cols=130  Identities=51%  Similarity=0.859  Sum_probs=114.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.++|..+.+.+|||+|+++++.++..+++.++++++|||+++..+++.+..|+..+......+.|+++++||+|+....
T Consensus        47 i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~  126 (199)
T 2f9l_A           47 IQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR  126 (199)
T ss_dssp             EEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence            56889999999999999999999999999999999999999999999988888887766543578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD  131 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~~  131 (165)
                      .+...++..++...++.++++||+++.|++++|+.|.+.+.+....+...
T Consensus       127 ~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~~~  176 (199)
T 2f9l_A          127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA  176 (199)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence            67778888889889999999999999999999999999998876555443

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.85  E-value=7.7e-21  Score=134.85  Aligned_cols=115  Identities=22%  Similarity=0.333  Sum_probs=91.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.+++|||+|++.++..+..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+....  ..+
T Consensus        59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~  136 (181)
T 1fzq_A           59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PAS  136 (181)
T ss_dssp             TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHH
Confidence            46789999999999999999999999999999999999999999998887754422 578999999999996533  233


Q ss_pred             HHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           87 EGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        87 ~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      +.....     ...+++++++||++|+|++++|++|.+.+.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred             HHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence            332221     12245799999999999999999999877543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.85  E-value=3.3e-22  Score=143.29  Aligned_cols=114  Identities=19%  Similarity=0.338  Sum_probs=87.6

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      ..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...  ...
T Consensus        71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~  148 (192)
T 2b6h_A           71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPV  148 (192)
T ss_dssp             TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCH
Confidence            446799999999999999999999999999999999999999999999988765432 57999999999999643  233


Q ss_pred             HHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           86 EEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        86 ~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .+.....     ...+++++++||++|.|++++|++|.+.+.
T Consensus       149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            3322211     123457999999999999999999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.85  E-value=1.8e-21  Score=135.93  Aligned_cols=114  Identities=22%  Similarity=0.326  Sum_probs=93.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+....  ...
T Consensus        50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~  127 (171)
T 1upt_A           50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSS  127 (171)
T ss_dssp             TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHH
T ss_pred             CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHH
Confidence            46789999999999999999999999999999999999999999998888765532 578999999999996532  223


Q ss_pred             HHHHH-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           87 EGEQF-----AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        87 ~~~~~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +....     +...+++++++||++|.|++++|++|.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          128 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            32222     22235679999999999999999999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=3.4e-20  Score=131.80  Aligned_cols=114  Identities=24%  Similarity=0.349  Sum_probs=90.7

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      +.+++|||+|++++..++..+++++|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+..  ....++
T Consensus        60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~  137 (187)
T 1zj6_A           60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAE  137 (187)
T ss_dssp             EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHH
Confidence            6789999999999999999999999999999999999999999999988876532 5799999999999964  234444


Q ss_pred             HHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           88 GEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        88 ~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ......     ..+++++++||++|.|++++|++|.+.+...
T Consensus       138 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          138 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred             HHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence            443322     2356899999999999999999999876443

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.84  E-value=9.3e-22  Score=153.39  Aligned_cols=119  Identities=17%  Similarity=0.248  Sum_probs=100.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIMLIGNKCD   76 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~----------~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D   76 (165)
                      .+.+++|||+|++.++.+|..++++++++|||||+++          ..++.+...|+..+..... .+.|++|++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5779999999999999999999999999999999999          4678888889888876532 6799999999999


Q ss_pred             CCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           77 LAHRR---------------AVSTEEGEQFAK-----------EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        77 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      +..+.               .++.+++..++.           ..++.+++|||+++.|+.++|+++.+.+++...
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l  347 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL  347 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence            84221               356777777766           346779999999999999999999999987544

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.84  E-value=2.9e-20  Score=132.48  Aligned_cols=113  Identities=19%  Similarity=0.319  Sum_probs=94.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCCCCH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      +.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+.....   .+.|+++|+||+|+..  ....
T Consensus        67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~  144 (190)
T 2h57_A           67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTS  144 (190)
T ss_dssp             CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCH
Confidence            6789999999999999999999999999999999999999999999988876543   3789999999999964  3345


Q ss_pred             HHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           86 EEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        86 ~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ++...++.     ..+++++++||++|.|++++|++|.+.+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          145 VKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             HHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            55555442     235679999999999999999999887643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.74  E-value=1.1e-22  Score=146.63  Aligned_cols=120  Identities=28%  Similarity=0.589  Sum_probs=101.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus        71 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD  149 (204)
Confidence            456778888999999999999999999999999999999999999999887 6777776554 37899999999999643


Q ss_pred             C------------CCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 R------------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~------------~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .            .+...+...++...++ +++++||++|.|++++|++|.+.++
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il  204 (204)
T 3th5_A          150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  204 (204)
Confidence            2            3445566677777787 8999999999999999999987653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.84  E-value=3.3e-20  Score=131.53  Aligned_cols=115  Identities=25%  Similarity=0.333  Sum_probs=94.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.+++|||+|++++...+..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+....  ...
T Consensus        61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~  138 (186)
T 1ksh_A           61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCN  138 (186)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHH
Confidence            36789999999999999999999999999999999999999999999888766532 579999999999996532  333


Q ss_pred             HHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           87 EGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        87 ~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      +......     ..+++++++||++|.|++++|++|.+.+.++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          139 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            3333221     2356799999999999999999999887653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.84  E-value=3e-21  Score=138.49  Aligned_cols=114  Identities=24%  Similarity=0.343  Sum_probs=92.7

Q ss_pred             CEEEEEEEEeCCCchhhhhhh---HhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~---~~~~~~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +..+.+++|||+|+++|..+.   ..+++++|++|+|||+++.  .++..+..|+..+.... .+.|+++|+||+|+...
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCH
T ss_pred             CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCch
Confidence            566789999999999987765   8999999999999999997  67777777777765443 57999999999998542


Q ss_pred             -------CCCCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 -------RAVSTEEGEQFAK----EHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 -------~~~~~~~~~~~~~----~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                             +.+.......++.    ..+++++++||++ .|++++|+.+++.+
T Consensus       145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                   2333444556666    5678899999999 99999999998865

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.84  E-value=2.3e-20  Score=132.13  Aligned_cols=110  Identities=25%  Similarity=0.334  Sum_probs=91.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      +.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+.... ..+.|+++|+||+|+...  ....+
T Consensus        65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~  142 (181)
T 2h17_A           65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAE  142 (181)
T ss_dssp             EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHH
Confidence            679999999999999999999999999999999999999999999988887643 257999999999999542  33444


Q ss_pred             HHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           88 GEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        88 ~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +.....     ..+++++++||++|.|++++|++|.+.
T Consensus       143 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          143 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            443321     235579999999999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.84  E-value=1.5e-20  Score=134.00  Aligned_cols=117  Identities=19%  Similarity=0.346  Sum_probs=93.0

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +..+.+.+|||+|++++..++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+...  ..
T Consensus        64 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~  141 (188)
T 1zd9_A           64 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LD  141 (188)
T ss_dssp             ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CC
T ss_pred             eCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CC
Confidence            3456789999999999999999999999999999999999999999999988765432 57999999999999643  23


Q ss_pred             HHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           85 TEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        85 ~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ..+......     ..+++++++||++|.|++++|++|.+.+.++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            333222111     2345799999999999999999998876543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.83  E-value=1.1e-21  Score=139.56  Aligned_cols=115  Identities=20%  Similarity=0.295  Sum_probs=93.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.+.+|||+|++++..++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+....  ...
T Consensus        65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~  142 (189)
T 2x77_A           65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEA  142 (189)
T ss_dssp             TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHH
Confidence            46789999999999999999999999999999999999999999988888765432 578999999999996532  223


Q ss_pred             HHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           87 EGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        87 ~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      +.....     ...+++++++||+++.|++++|++|.+.+.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          143 EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            322211     12345799999999999999999999988653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.83  E-value=6.1e-21  Score=148.80  Aligned_cols=121  Identities=16%  Similarity=0.233  Sum_probs=95.5

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIGNKC   75 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~   75 (165)
                      +.+.+++|||+|+++++.+|..++++++++|||||++          +..++++...|+..+..... .+.|++|++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            6899999999999999999999999999999999998          77889999999988876532 679999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHHHH
Q 031132           76 DLAHRRA--V-------------------STEEGEQFAKE----------------HGLIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        76 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      |+..++.  +                   +.+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   13445555332                123468999999999999999999


Q ss_pred             HHHHHHHhc
Q 031132          119 ATIYKKIQD  127 (165)
Q Consensus       119 ~~i~~~~~~  127 (165)
                      +.|++....
T Consensus       341 ~~I~~~~l~  349 (354)
T 2xtz_A          341 ETLRRRNLL  349 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999876543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=7.8e-20  Score=129.07  Aligned_cols=115  Identities=23%  Similarity=0.313  Sum_probs=91.1

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      +.+.+|||+|++++...+..+++++|++++|||+++..+++.+..|+..+.... ..+.|+++|+||+|+...  ....+
T Consensus        62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~  139 (183)
T 1moz_A           62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASE  139 (183)
T ss_dssp             EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHH
Confidence            678999999999999999999999999999999999999999999988887653 257899999999999643  33444


Q ss_pred             HHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           88 GEQFAKE-----HGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        88 ~~~~~~~-----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .......     .+++++++||++|+|++++|++|.+.+.+++
T Consensus       140 i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          140 VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence            4333221     2357999999999999999999999887653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.82  E-value=6e-21  Score=135.66  Aligned_cols=118  Identities=18%  Similarity=0.370  Sum_probs=93.0

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +..+.+.+|||+|+++|..+++.++++++++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.....+.
T Consensus        53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~  131 (184)
T 2zej_A           53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRK  131 (184)
T ss_dssp             ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHH
T ss_pred             CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhH
Confidence            4677899999999999999999999999999999999997 57899999999887654 478999999999986433221


Q ss_pred             ---HHHHHHHHHHcCCe----EEEecCCCCC-CHHHHHHHHHHHHHHH
Q 031132           85 ---TEEGEQFAKEHGLI----FMEASAKTAQ-NVEEAFIKTAATIYKK  124 (165)
Q Consensus        85 ---~~~~~~~~~~~~~~----~~~vSa~~~~-~i~~l~~~l~~~i~~~  124 (165)
                         ......++..++++    ++++||+++. +++++++.|.+.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence               12234445556776    9999999997 8999998888776553

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.82  E-value=5.4e-21  Score=147.45  Aligned_cols=124  Identities=15%  Similarity=0.193  Sum_probs=100.3

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIG   72 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~   72 (165)
                      ++.+.+.+++|||+|+++++.+|.+|+++++++|||||++          +..++.+...|+..+..... .+.|++|++
T Consensus       162 ~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~  241 (327)
T 3ohm_A          162 FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL  241 (327)
T ss_dssp             EEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred             EEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEE
Confidence            3344578999999999999999999999999999999654          66778888888888765543 679999999


Q ss_pred             eCCCCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           73 NKCDLAHRR----------------AVSTEEGEQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        73 nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      ||+|+..++                ..+.+++..++.          ..++.+++|||+++.||+.+|..+.+.|++...
T Consensus       242 NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          242 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  321 (327)
T ss_dssp             ECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence            999985322                356677776633          345678999999999999999999999987654


Q ss_pred             c
Q 031132          127 D  127 (165)
Q Consensus       127 ~  127 (165)
                      .
T Consensus       322 ~  322 (327)
T 3ohm_A          322 K  322 (327)
T ss_dssp             C
T ss_pred             H
Confidence            3

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.82  E-value=1.5e-20  Score=147.04  Aligned_cols=120  Identities=18%  Similarity=0.226  Sum_probs=92.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIMLIGNKCD   76 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~----------~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D   76 (165)
                      .+.+++|||+|++.++.+|..++++++++|||||+++          ..++.+...|+..+..... .+.|++|++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            5789999999999999999999999999999999999          6789999999988876532 6799999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           77 LAHRR----------------AVSTEEGEQFAK-----------EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        77 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      +..+.                ..+.+++..++.           ..++.+++|||+++.|++++|+++.+.|++....
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~  357 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK  357 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence            85321                255666666551           3457799999999999999999999999876654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.81  E-value=4.9e-20  Score=145.50  Aligned_cols=119  Identities=13%  Similarity=0.191  Sum_probs=96.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHA-NANMTIMLIGNKCD   76 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D   76 (165)
                      .+.+++|||+|+++++.+|..|+++++++|||||+++          ..++.+...|+..+.... ..+.|++||+||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            3789999999999999999999999999999999999          889999999999887653 26789999999999


Q ss_pred             CCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEecCCCCCCHHHH
Q 031132           77 LAHRRA---V---------------------------STEEGEQFA-----KE--------HGLIFMEASAKTAQNVEEA  113 (165)
Q Consensus        77 l~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~vSa~~~~~i~~l  113 (165)
                      |...+.   .                           ..+++..++     ..        ..+.+++|||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            843211   1                           123444442     21        2456889999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 031132          114 FIKTAATIYKKIQ  126 (165)
Q Consensus       114 ~~~l~~~i~~~~~  126 (165)
                      |.++.+.|++...
T Consensus       376 F~~v~~~I~~~~l  388 (402)
T 1azs_C          376 FNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.81  E-value=2.1e-20  Score=139.80  Aligned_cols=117  Identities=25%  Similarity=0.347  Sum_probs=91.6

Q ss_pred             eCCEEEEEEEEe-----------------------CCCchhhhhhhHhhhc---------------------CCcEEEEE
Q 031132            4 IDNKPIKLQIWD-----------------------TAGQESFRSITRSYYR---------------------GAAGALLV   39 (165)
Q Consensus         4 i~~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~vi~v   39 (165)
                      +++..+.+++||                       ++|+++|..++..+++                     ++|++|+|
T Consensus        90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV  169 (255)
T 3c5h_A           90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG  169 (255)
T ss_dssp             ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred             cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence            678899999999                       7788888888888887                     79999999


Q ss_pred             EeCCCh--hhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHH
Q 031132           40 YDITRR--ETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        40 ~D~~~~--~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~l~~  115 (165)
                      ||++++  .+++.+..|+..+... ...++|++||+||+|+.....+  ++...++.. .+++++++||++|.|++++|+
T Consensus       170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence            999998  8999999999988765 2257999999999999643333  456666665 478999999999999999999


Q ss_pred             HHHHHHH
Q 031132          116 KTAATIY  122 (165)
Q Consensus       116 ~l~~~i~  122 (165)
                      +|.+.+.
T Consensus       248 ~l~~~l~  254 (255)
T 3c5h_A          248 TLVQLID  254 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988763

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.80  E-value=1.4e-18  Score=124.23  Aligned_cols=120  Identities=53%  Similarity=0.898  Sum_probs=106.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++||++|++++..++..+++.++++++|||.++..+++.+..|+..+........|+++++||+|+....
T Consensus        71 i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~  150 (191)
T 1oix_A           71 IQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR  150 (191)
T ss_dssp             EEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence            56789999999999999999999999999999999999999999999888888887765544578999999999997666


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ......++.++...++.++++||+++.|++++|+.|.+.+
T Consensus       151 ~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            6777888889999999999999999999999999998765

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.80  E-value=1.5e-20  Score=144.67  Aligned_cols=114  Identities=18%  Similarity=0.259  Sum_probs=86.5

Q ss_pred             EEEEEEEeCCCchhhhh---hhHhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC--
Q 031132            8 PIKLQIWDTAGQESFRS---ITRSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR--   80 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~---~~~~~~~~ad~vi~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--   80 (165)
                      .+.+++|||+||++|+.   .++.|+++++++|+|||+++.  .....+..|+..+.... +++|+++++||+|+..+  
T Consensus        45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~  123 (331)
T 3r7w_B           45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDF  123 (331)
T ss_dssp             SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHH
T ss_pred             EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhh
Confidence            36899999999999964   468999999999999999997  33333444454444433 57999999999999643  


Q ss_pred             -----CCCCHHHHHHHHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 -----RAVSTEEGEQFAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 -----~~~~~~~~~~~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                           +.+..++...++..    .++++++|||++ .|+.++|..+++.+++
T Consensus       124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence                 22444445555554    578899999998 5999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.80  E-value=8.7e-20  Score=141.18  Aligned_cols=118  Identities=19%  Similarity=0.335  Sum_probs=90.1

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +++..+.++||||+|++.+..++..+++.+|++|+|||+++..++..+..|+..+..... .++|++||+||+|+.... 
T Consensus       204 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-  282 (329)
T 3o47_A          204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-  282 (329)
T ss_dssp             EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-
T ss_pred             EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-
Confidence            344456799999999999999999999999999999999999999999988887765543 579999999999996533 


Q ss_pred             CCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        83 ~~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                       ...+......     ..+++++++||++|.|++++|++|.+.+.+
T Consensus       283 -~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          283 -NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             -CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence             3333322221     124569999999999999999999988754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.78  E-value=1.3e-19  Score=140.27  Aligned_cols=120  Identities=18%  Similarity=0.249  Sum_probs=97.4

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIG   72 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~   72 (165)
                      ++.+.+.+++|||+|+++++.+|..|+++++++|||||++          +..++.+...|+..+..... .+.|++|++
T Consensus       156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~  235 (340)
T 4fid_A          156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL  235 (340)
T ss_dssp             EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred             EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence            4445678999999999999999999999999999999998          67889999899888876543 679999999


Q ss_pred             eCCCCCCC---------------CCCCHHHHHHHHHH-c--------------------------CCeEEEecCCCCCCH
Q 031132           73 NKCDLAHR---------------RAVSTEEGEQFAKE-H--------------------------GLIFMEASAKTAQNV  110 (165)
Q Consensus        73 nK~Dl~~~---------------~~~~~~~~~~~~~~-~--------------------------~~~~~~vSa~~~~~i  110 (165)
                      ||+|+..+               ...+.+++..++.. +                          .+.++++||+++.|+
T Consensus       236 NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv  315 (340)
T 4fid_A          236 NKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI  315 (340)
T ss_dssp             ECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred             ECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence            99998431               11234454443322 2                          366899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 031132          111 EEAFIKTAATIYK  123 (165)
Q Consensus       111 ~~l~~~l~~~i~~  123 (165)
                      +.+|..+.+.|++
T Consensus       316 ~~vF~~v~~~Il~  328 (340)
T 4fid_A          316 KRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999998

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.78  E-value=1.8e-18  Score=125.34  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=80.9

Q ss_pred             EEEEEEEeCCCchhhhh-hhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQH---ANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .+.+++|||+|++++.. ++..+++++|++|+|||+++.. ++.....++..+...   ...+.|+++|+||+|+.....
T Consensus        53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  132 (214)
T 2fh5_B           53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  132 (214)
T ss_dssp             CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence            57899999999999988 8999999999999999999853 466666655444322   124689999999999965432


Q ss_pred             CCH--HHHHHHHH---------------------------------Hc--CCeEEEecCCCC------CCHHHHHHHHHH
Q 031132           83 VST--EEGEQFAK---------------------------------EH--GLIFMEASAKTA------QNVEEAFIKTAA  119 (165)
Q Consensus        83 ~~~--~~~~~~~~---------------------------------~~--~~~~~~vSa~~~------~~i~~l~~~l~~  119 (165)
                      ...  ........                                 .+  ++++++|||++|      .|++++|++|.+
T Consensus       133 ~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~  212 (214)
T 2fh5_B          133 AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  212 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence            111  01111111                                 11  567999999999      999999999987


Q ss_pred             H
Q 031132          120 T  120 (165)
Q Consensus       120 ~  120 (165)
                      .
T Consensus       213 ~  213 (214)
T 2fh5_B          213 I  213 (214)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.77  E-value=1e-18  Score=133.96  Aligned_cols=114  Identities=18%  Similarity=0.367  Sum_probs=93.2

Q ss_pred             EEEEEEEeCCCchhh-----hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCC-
Q 031132            8 PIKLQIWDTAGQESF-----RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAH-   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~-----~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~-   79 (165)
                      .+.+.+|||+|++++     ..++..+++++|++|+|||+++..+++.+..|...+....  ..++|+++|+||+|+.. 
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~  130 (307)
T 3r7w_A           51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL  130 (307)
T ss_dssp             TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence            567999999999988     7889999999999999999999999998877755554332  25799999999999965 


Q ss_pred             -CCC----CCHHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           80 -RRA----VSTEEGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        80 -~~~----~~~~~~~~~~~~~~---~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                       .+.    +...++..++..+|   ++++++||++ .|+.++|..++..++
T Consensus       131 ~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          131 DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence             222    44466777888887   6899999999 899999998887543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.76  E-value=1.5e-17  Score=121.88  Aligned_cols=118  Identities=19%  Similarity=0.156  Sum_probs=87.1

Q ss_pred             EEEEEEeCCCc------hhh---hhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            9 IKLQIWDTAGQ------ESF---RSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~------~~~---~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      +.+.+|||+|+      ++.   ...+..++..+|++|+|||+++..++.  ....|+..+.... .+.|+++|+||+|+
T Consensus        76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl  154 (228)
T 2qu8_A           76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDK  154 (228)
T ss_dssp             EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGG
T ss_pred             CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCccc
Confidence            57899999999      331   122345678999999999999987764  2334555554332 37899999999999


Q ss_pred             CCCCCCCHH---HHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           78 AHRRAVSTE---EGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        78 ~~~~~~~~~---~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      .....+...   ....++...+  ++++++||++|.|++++|++|.+.+.+....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          155 CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            766556554   3455566666  7899999999999999999999999876544

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.75  E-value=5.9e-18  Score=118.12  Aligned_cols=106  Identities=21%  Similarity=0.198  Sum_probs=82.1

Q ss_pred             EEEEEEeCCCchhhh------hhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~------~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+|||+|+.++.      .+...++.  ++|++++|+|+++..   ....|+..+..   .+.|+++|+||+|+...
T Consensus        50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~  123 (165)
T 2wji_A           50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME---MGANLLLALNKMDLAKS  123 (165)
T ss_dssp             EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHH
T ss_pred             cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccc
Confidence            468999999998764      45566765  899999999999854   33446655544   36899999999998543


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..+.. +...++..++++++++||++|.|++++|++|.+.+
T Consensus       124 ~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          124 LGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             TTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             cChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            33332 35667777889999999999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.72  E-value=2.6e-17  Score=115.43  Aligned_cols=113  Identities=24%  Similarity=0.260  Sum_probs=83.4

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      .+++.  .+.+|||+|++++..++..++..+|++++|||+++.   .+++.+    ..+   ...+.|+++|+||+|+..
T Consensus        51 ~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~  121 (178)
T 2lkc_A           51 TVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPE  121 (178)
T ss_dssp             EETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSC
T ss_pred             EeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCc
Confidence            45554  467999999999999999999999999999999884   333322    222   224689999999999964


Q ss_pred             CCCCCHHHHHHHHHHc-------C--CeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           80 RRAVSTEEGEQFAKEH-------G--LIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~-------~--~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      .   ............       +  ++++++||++|.|++++|++|.+.+...+.+
T Consensus       122 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          122 A---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             S---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred             C---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence            2   233333322222       1  4799999999999999999999987765444

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.71  E-value=2.6e-17  Score=116.60  Aligned_cols=113  Identities=18%  Similarity=0.187  Sum_probs=84.6

Q ss_pred             EEEEEeCCC-----------chhhhhhhHhhhcC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHH-hcCCCCe
Q 031132           10 KLQIWDTAG-----------QESFRSITRSYYRG-AAGALLVYDITRRETFNHL-ASWLED--------ARQ-HANANMT   67 (165)
Q Consensus        10 ~~~l~Dt~G-----------~~~~~~~~~~~~~~-ad~vi~v~D~~~~~s~~~~-~~~~~~--------i~~-~~~~~~p   67 (165)
                      .+.+|||+|           ++.+..++..+++. +++++++|++.+..++..+ ..|...        +.. ....+.|
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  124 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP  124 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence            478999999           77888888888887 7776666666666667665 445432        211 1125789


Q ss_pred             EEEEeeCCCCCCCCCCCHHHHHHHHHHcCCe-------EEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           68 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-------FMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        68 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      +++|+||+|+....   ......++..++.+       ++++||++|+|++++|++|.+.+.+..
T Consensus       125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            99999999986533   55667777777764       799999999999999999999886643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=2e-17  Score=126.52  Aligned_cols=102  Identities=17%  Similarity=0.138  Sum_probs=86.1

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      .+++|||  +++++.+++.+++++|++|+|||++++. +++.+..|+..+..   .++|++||+||+||.+...+  ++.
T Consensus        64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~  136 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKV  136 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHH
T ss_pred             eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHH
Confidence            5789999  9999999999999999999999999987 78888899887654   36899999999999643322  345


Q ss_pred             HHHHHHcC--CeEEEecCCCCCCHHHHHHHHH
Q 031132           89 EQFAKEHG--LIFMEASAKTAQNVEEAFIKTA  118 (165)
Q Consensus        89 ~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~  118 (165)
                      ..++..++  ++++++||++|.|++++|..+.
T Consensus       137 ~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          137 RELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            56666666  8999999999999999998774

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.70  E-value=1.4e-17  Score=136.30  Aligned_cols=114  Identities=16%  Similarity=0.223  Sum_probs=94.0

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      +..+.+.+|||+|++.+..++..+++.+|++|+|||+++.   +.+..|+..+.... .+.|+++|+||+|+.....+..
T Consensus        95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~  170 (535)
T 3dpu_A           95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQ  170 (535)
T ss_dssp             TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCH
T ss_pred             CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCH
Confidence            3467899999999999999999999999999999999865   55667788777665 4689999999999977677778


Q ss_pred             HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           86 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        86 ~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +....++...+.+++++||++|.|++++++.|.+.+..
T Consensus       171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            88888888889999999999999999999999887755

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.70  E-value=2.8e-17  Score=113.33  Aligned_cols=103  Identities=16%  Similarity=0.101  Sum_probs=76.6

Q ss_pred             EEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132           10 KLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus        10 ~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .+.+|||+|+..       +...+..+++.+|++++|+|+++..+..  ..++......  .+.|+++|+||+|+.... 
T Consensus        50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~-  124 (161)
T 2dyk_A           50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE-  124 (161)
T ss_dssp             EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG-
T ss_pred             eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch-
Confidence            578999999887       4567778899999999999999853332  1222222222  368999999999996432 


Q ss_pred             CCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                         ++...++ ..++ +++++||++|.|++++|++|.+.+
T Consensus       125 ---~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          125 ---LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             ---GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ---HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence               2223334 5677 799999999999999999998753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.69  E-value=1.1e-16  Score=113.94  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=79.7

Q ss_pred             EEEEEeCCC----------chhhhhhhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132           10 KLQIWDTAG----------QESFRSITRSYYRGA---AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus        10 ~~~l~Dt~G----------~~~~~~~~~~~~~~a---d~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+.+|||+|          ++.+..++..+++.+   |++++|+|+++..++.... ++..+..   .+.|+++|+||+|
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~D  145 (195)
T 1svi_A           70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKAD  145 (195)
T ss_dssp             TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGG
T ss_pred             cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcc
Confidence            478999999          788888899998887   9999999999876665432 1222222   4689999999999


Q ss_pred             CCCCCCCCH--HHHHH-HHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           77 LAHRRAVST--EEGEQ-FAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        77 l~~~~~~~~--~~~~~-~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +.....+..  .+... +....+.+++++||++|.|++++|++|.+.+
T Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          146 KIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             GSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            965443321  12222 2222357899999999999999999998765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.69  E-value=1.3e-17  Score=117.34  Aligned_cols=110  Identities=22%  Similarity=0.245  Sum_probs=79.7

Q ss_pred             eeCCEEEEEEEEeCCCchhhhh------h--hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRS------I--TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~------~--~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      .+++.  .+.+|||+|++++..      +  ...+++.+|++++|||+++..+++ ...|+..+......++|+++|+||
T Consensus        48 ~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK  124 (172)
T 2gj8_A           48 HIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNK  124 (172)
T ss_dssp             EETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEEC
T ss_pred             EECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEEC
Confidence            45554  478999999864311      1  124689999999999999987765 346777666554357899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +|+.+...       .++...+.+++++||++|.|++++|++|.+.+.
T Consensus       125 ~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          125 ADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             ccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            99853211       011123568999999999999999999987653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.68  E-value=7.8e-17  Score=114.13  Aligned_cols=108  Identities=19%  Similarity=0.187  Sum_probs=84.8

Q ss_pred             EEEEEEeCCCchhhh------hhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~------~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+|||+|++.+.      .++..++.  .+|++++|+|.++   ++....|+..+..   .+.|+++++||+|+...
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  127 (188)
T 2wjg_A           54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS  127 (188)
T ss_dssp             EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH
T ss_pred             cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc
Confidence            568999999998764      45677775  4999999999876   4555666666554   36899999999998544


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..+. .....++..++++++++||+++.|++++|+++.+.+..
T Consensus       128 ~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          128 LGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             TTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred             ccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence            3333 34566777789999999999999999999999887754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.67  E-value=3.6e-16  Score=119.84  Aligned_cols=111  Identities=16%  Similarity=0.109  Sum_probs=88.9

Q ss_pred             EEEEEEEeCCCchh----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            8 PIKLQIWDTAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .+.+.||||||+..          +...+..+++.+|++++|+|+++..+......|+..+..   .+.|+++|+||+|+
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl  134 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDK  134 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGG
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccC
Confidence            46789999999854          346677889999999999999998877777666666554   36899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .............+...++  .+++++||++|.|++++|+.|.+.+
T Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence            6334444556666677765  6799999999999999999988766

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.65  E-value=6.2e-16  Score=109.73  Aligned_cols=107  Identities=14%  Similarity=0.218  Sum_probs=79.7

Q ss_pred             EEEEEeCCC----------chhhhhhhHhhhcCC---cEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132           10 KLQIWDTAG----------QESFRSITRSYYRGA---AGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus        10 ~~~l~Dt~G----------~~~~~~~~~~~~~~a---d~vi~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      .+.+|||+|          ++.+..++..+++.+   |++++|+|+++..+.  ..+..|+..      .+.|+++|+||
T Consensus        69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK  142 (195)
T 3pqc_A           69 KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTK  142 (195)
T ss_dssp             TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEEC
T ss_pred             cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEC
Confidence            477999999          777888888888877   999999999875333  333334332      36899999999


Q ss_pred             CCCCCCCC--CCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           75 CDLAHRRA--VSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        75 ~Dl~~~~~--~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +|+.....  ...+....++... .++++++||++|.|++++|++|.+.+.
T Consensus       143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            99864332  2223444455543 468999999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.64  E-value=1.9e-16  Score=119.43  Aligned_cols=107  Identities=21%  Similarity=0.201  Sum_probs=82.5

Q ss_pred             EEEEEEEeCCCchhhh------hhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            8 PIKLQIWDTAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~------~~~~~~~~--~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ...+.+|||||+..+.      .+++.++.  .+|++++|+|+++..+.   ..|...+..   .+.|+++++||+|+..
T Consensus        48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLD  121 (272)
T ss_dssp             CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHH
T ss_pred             CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCC
Confidence            4578999999998765      46677776  69999999999885433   344444443   3789999999999854


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...+. .....++..++++++++||++|.|++++|+++.+.+
T Consensus       122 ~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          122 GQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             HTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             cCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            33333 345667777899999999999999999999987754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.64  E-value=1.3e-15  Score=122.52  Aligned_cols=117  Identities=17%  Similarity=0.128  Sum_probs=87.7

Q ss_pred             eeCCEEEEEEEEeCCC----------chhhhhhhHh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAG----------QESFRSITRS-YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G----------~~~~~~~~~~-~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv   71 (165)
                      .+++.  .+.+|||+|          +++|..++.. +++.+|++|+|+|+++..+. ....|+..+..   .+.|+++|
T Consensus       239 ~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv  312 (456)
T 4dcu_A          239 TYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIV  312 (456)
T ss_dssp             EETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEE
T ss_pred             EECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEE
Confidence            34554  689999999          7778777654 78999999999999885332 22334443333   46899999


Q ss_pred             eeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           72 GNKCDLAHRRAVSTEEGEQFAKEH-----GLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        72 ~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      +||+|+........++....+...     +.+++++||++|.|++++|+++.+.+....
T Consensus       313 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          313 VNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             EECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            999999766656556666555544     578999999999999999999998775543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.64  E-value=2.3e-16  Score=118.15  Aligned_cols=108  Identities=20%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             EEEEEEEeCCCchhhhh------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ...+.+|||||+..+..      +.+.++  ..+|++++|+|+++..+.   ..|+..+..   .+.|+++++||+|+..
T Consensus        51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAK  124 (258)
T ss_dssp             TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHH
T ss_pred             CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCC
Confidence            35789999999987654      335565  589999999999986443   234444433   3689999999999854


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ...+.. ....++..++++++++||++|.|++++|+++.+.+.
T Consensus       125 ~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          125 KTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             HTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            433332 356677888999999999999999999999988653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.62  E-value=4.1e-15  Score=122.87  Aligned_cols=112  Identities=23%  Similarity=0.281  Sum_probs=89.9

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +++.+.++||||||+.+|...+...++.+|++|+|+|+++..+......|.....    .++|+++++||+|+....  .
T Consensus        67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~  140 (599)
T 3cb4_D           67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--P  140 (599)
T ss_dssp             TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred             CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--H
Confidence            5667899999999999999999999999999999999998776666666655432    468999999999996532  2


Q ss_pred             HHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHHH
Q 031132           85 TEEGEQFAKEHGLI---FMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        85 ~~~~~~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ......+...+++.   ++++||++|.|+++++++|.+.+.
T Consensus       141 ~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          141 ERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             HHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            33344555666764   899999999999999999887654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.61  E-value=6.1e-16  Score=115.73  Aligned_cols=104  Identities=18%  Similarity=0.123  Sum_probs=78.3

Q ss_pred             EEEEEeCCCchhhhh----------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132           10 KLQIWDTAGQESFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~----------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .+.+|||||...+..          +++.++  .++|++|+|+|+++..+...+..++.      ..+.|+++++||+|+
T Consensus        49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl  122 (256)
T 3iby_A           49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDI  122 (256)
T ss_dssp             EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHH
T ss_pred             EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhc
Confidence            689999999876643          566777  89999999999998654443332222      247899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .....+.. ....+...++++++++||++|.|++++|++|.+.
T Consensus       123 ~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          123 AEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            54332211 2344667789999999999999999999998765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.61  E-value=6.5e-15  Score=121.59  Aligned_cols=112  Identities=25%  Similarity=0.296  Sum_probs=89.6

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      ++..+.++||||||+.+|...+...++.+|++|+|+|+++..+......|.....    .++|+++++||+|+....  .
T Consensus        69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~  142 (600)
T 2ywe_A           69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V  142 (600)
T ss_dssp             TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred             CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence            4567899999999999999999999999999999999999877776666655432    468999999999996432  2


Q ss_pred             HHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHHHH
Q 031132           85 TEEGEQFAKEHGLI---FMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        85 ~~~~~~~~~~~~~~---~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ......+...+++.   ++++||++|.|++++|++|.+.+.
T Consensus       143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            23344455556663   899999999999999999887664

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.60  E-value=4.9e-16  Score=112.67  Aligned_cols=101  Identities=19%  Similarity=0.257  Sum_probs=74.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRG----AAGALLVYDIT-RRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~----ad~vi~v~D~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~   79 (165)
                      +.+.+|||+|++.++..+..+++.    +|++|+|||++ +..++..+..|+..+...    ...++|+++|+||+|+..
T Consensus        55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  134 (218)
T ss_dssp             SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence            468899999999999999999887    99999999999 888888888888877654    225799999999999976


Q ss_pred             CCCCC------HHHHHHHHHHcCCeEEEecCCCCCC
Q 031132           80 RRAVS------TEEGEQFAKEHGLIFMEASAKTAQN  109 (165)
Q Consensus        80 ~~~~~------~~~~~~~~~~~~~~~~~vSa~~~~~  109 (165)
                      ...+.      ..+...++...+.+++++||++|.+
T Consensus       135 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          135 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            54433      3345556666677899999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.60  E-value=2.4e-15  Score=109.26  Aligned_cols=113  Identities=17%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             EEEEEEeCCC----------chhhhhhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132            9 IKLQIWDTAG----------QESFRSITRSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus         9 ~~~~l~Dt~G----------~~~~~~~~~~~~~~---ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      ..+.||||+|          ++.+..++..+++.   +|++++|+|+++..+.. ...++..+..   .+.|+++|+||+
T Consensus        79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~  154 (223)
T 4dhe_A           79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKC  154 (223)
T ss_dssp             CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECG
T ss_pred             CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEecc
Confidence            4688999999          45667777777776   78899999998753322 2233333332   368999999999


Q ss_pred             CCCCCCCCC--HHHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           76 DLAHRRAVS--TEEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        76 Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      |+.......  ..........       .+.+++++||++|.|++++|++|.+.+....
T Consensus       155 Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          155 DKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             ccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            986432211  1112222222       4567999999999999999999998876543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.59  E-value=1.7e-14  Score=114.20  Aligned_cols=113  Identities=16%  Similarity=0.132  Sum_probs=86.1

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--   84 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--   84 (165)
                      ....+.+|||||+++|...+...+..+|++++|+|+++..++.....++..+...  ...|+++++||+|+.+.....  
T Consensus        73 ~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  150 (403)
T 3sjy_A           73 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQ  150 (403)
T ss_dssp             EEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             ccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc--CCCCEEEEEECccccchHHHHHH
Confidence            3478999999999999999999999999999999999876677777777666544  235899999999986432110  


Q ss_pred             HHHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           85 TEEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        85 ~~~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .++...+....   +++++++||++|+|+++++++|.+.+
T Consensus       151 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          151 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            11122222221   56799999999999999999888755

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.59  E-value=4e-15  Score=120.07  Aligned_cols=113  Identities=18%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhh--------HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSIT--------RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      .+++  +.+.+|||+|+.++...+        ..+++.+|++++|+|++++.++..+..+...+...  .+.|+++|+||
T Consensus       277 ~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK  352 (476)
T 3gee_A          277 IHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANK  352 (476)
T ss_dssp             EETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEEC
T ss_pred             EECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEEC
Confidence            3444  468999999998766544        34688999999999999987765433333333322  36899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +|+......   ....+......+++++||++|.|+++++++|.+.+.
T Consensus       353 ~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          353 LDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             cCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            999654322   223333332467999999999999999999988775

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.59  E-value=4.8e-15  Score=118.50  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             eeCCEEEEEEEEeCCCc----------hhhhhhhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQ----------ESFRSITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~----------~~~~~~~~-~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv   71 (165)
                      .+++.  .+.+|||+|+          +.|..++. .+++.+|++++|+|+++..++... .|+..+..   .+.|+++|
T Consensus       219 ~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv  292 (436)
T 2hjg_A          219 TYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIV  292 (436)
T ss_dssp             EETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEE
T ss_pred             EECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEE
Confidence            34555  4899999998          55665554 478999999999999998777654 45555443   47899999


Q ss_pred             eeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           72 GNKCDLAHRRAVSTEEGEQ-FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        72 ~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      +||+|+.+.......+... +...    .+.+++++||++|.|++++|+.+.+.+...
T Consensus       293 ~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          293 VNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             EECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence            9999997655443333322 2222    367899999999999999999998877643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.58  E-value=2.6e-14  Score=111.50  Aligned_cols=113  Identities=18%  Similarity=0.199  Sum_probs=87.1

Q ss_pred             EEEEEEeCCCchhhh---------hhhHhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            9 IKLQIWDTAGQESFR---------SITRSYYRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~---------~~~~~~~~~ad~vi~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      ..+.+|||+|.....         .....+...+|++++|+|+++..  +++....|+..+.... .+.|+++|+||+|+
T Consensus       214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl  292 (357)
T 2e87_A          214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDV  292 (357)
T ss_dssp             EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTT
T ss_pred             ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECccc
Confidence            458999999985421         22334556799999999998876  6777788888887654 27899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .....  ..+...++...+++++++||++|+|+++++++|.+.+...
T Consensus       293 ~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          293 ADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             CCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            64332  2344555667788999999999999999999999988653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.56  E-value=5.5e-15  Score=113.00  Aligned_cols=110  Identities=16%  Similarity=0.111  Sum_probs=87.9

Q ss_pred             CCEEEEEEEEe-CCC-----chhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            5 DNKPIKLQIWD-TAG-----QESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         5 ~~~~~~~~l~D-t~G-----~~~~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      -|+.+.++.|| +-|     ++++..+.+.+++++|++++|+|++++. +++.+..|+..+..   .++|+++|+||+|+
T Consensus        46 vGD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL  122 (302)
T 2yv5_A           46 AGDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDL  122 (302)
T ss_dssp             BTCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGG
T ss_pred             CceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccC
Confidence            46778888888 433     6778888889999999999999999886 88888889886654   47899999999999


Q ss_pred             CCCCCCC-HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 031132           78 AHRRAVS-TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  117 (165)
Q Consensus        78 ~~~~~~~-~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l  117 (165)
                      .+...+. ..+...++...+++++++||++|.|+++++..+
T Consensus       123 ~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          123 LNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHT
T ss_pred             CCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhc
Confidence            6432111 234455566778999999999999999999876

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.56  E-value=3.7e-15  Score=118.64  Aligned_cols=105  Identities=14%  Similarity=0.153  Sum_probs=81.7

Q ss_pred             EEEEEeCCCchhhhhh-------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132           10 KLQIWDTAGQESFRSI-------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~-------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      .+.+|||+|++++..+       +..++..+|++|+|+|++...   ....|+..+...   +.|+++|+||+|+.....
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKA  157 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCC
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccH
Confidence            6899999999876544       456889999999999994433   334455555444   689999999999976543


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .  +....+...++++++++||++|.|++++|++|.+.+.
T Consensus       158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred             H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence            3  4455556667889999999999999999999988774

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.55  E-value=3.9e-14  Score=112.35  Aligned_cols=113  Identities=19%  Similarity=0.165  Sum_probs=74.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC--CCH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VST   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~   85 (165)
                      ...+.||||||+++|...+...+..+|++|+|+|+++..........+..+...  ...|+++++||+|+.....  ...
T Consensus        80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHH
Confidence            368999999999999888877888999999999999632112222222222222  2358999999999965432  223


Q ss_pred             HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           86 EEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        86 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +++..++..   .+++++++||++|+|+++++++|...+.
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            445555544   2578999999999999999999887543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.55  E-value=1.2e-14  Score=109.27  Aligned_cols=107  Identities=21%  Similarity=0.190  Sum_probs=80.4

Q ss_pred             EEEEEeCCCchhhhh------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132           10 KLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+.+|||||+..+..      .+..++  .++|++++|+|+++..   ....++..+...  ...|+++++||+|+....
T Consensus        51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~  125 (271)
T 3k53_A           51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKK  125 (271)
T ss_dssp             EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHH
T ss_pred             eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCccc
Confidence            489999999887655      566776  6899999999998853   333344444333  238999999999975332


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .... ....+...++++++++||++|.|++++|+.+...+.
T Consensus       126 ~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~  165 (271)
T 3k53_A          126 GAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE  165 (271)
T ss_dssp             TCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             ccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            2222 255667778999999999999999999999988764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.55  E-value=5.6e-15  Score=114.72  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=86.6

Q ss_pred             EEEEEEeCCCchh----hhhhhHhhh---cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCC
Q 031132            9 IKLQIWDTAGQES----FRSITRSYY---RGAAGALLVYDITR---RETFNHLASWLEDARQHAN--ANMTIMLIGNKCD   76 (165)
Q Consensus         9 ~~~~l~Dt~G~~~----~~~~~~~~~---~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D   76 (165)
                      ..+.||||+|+.+    +..++..++   +.+|++|+|+|+++   ..+++.+..|+..+.....  ..+|+++|+||+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D  285 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD  285 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence            3689999999753    333445554   45999999999998   7788888888888877642  4789999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           77 LAHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +...    .+....+...+.  .+++++||++++|+++++.+|.+.+.+
T Consensus       286 l~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          286 MPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             STTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             CCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            8542    234455666665  679999999999999999999887743

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.54  E-value=2.3e-15  Score=113.59  Aligned_cols=106  Identities=15%  Similarity=0.128  Sum_probs=77.1

Q ss_pred             EEEEEEeCCCchhhh----------hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            9 IKLQIWDTAGQESFR----------SITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~----------~~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      ..+.+|||||+..+.          ..+..++  +.+|++|+|+|+++......+   ...+...   ++|+++|+||+|
T Consensus        50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~D  123 (274)
T 3i8s_A           50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLD  123 (274)
T ss_dssp             CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHH
T ss_pred             CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECcc
Confidence            457899999987655          2344444  799999999999985544333   3333333   689999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +.....+. .....+...++++++++||++|.|++++|++|.+.+
T Consensus       124 l~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          124 IAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             chhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            85433221 123556677899999999999999999999887654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.54  E-value=5.5e-15  Score=106.60  Aligned_cols=104  Identities=7%  Similarity=0.011  Sum_probs=69.3

Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hc--CCCCeEEEEeeCC-CCCCCCCCCHHHHH
Q 031132           16 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ---HA--NANMTIMLIGNKC-DLAHRRAVSTEEGE   89 (165)
Q Consensus        16 t~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~---~~--~~~~p~ivv~nK~-Dl~~~~~~~~~~~~   89 (165)
                      .+||.+.+++|+.||.++|++|||+|++|...++ .+..+..+..   ..  ..+.|++|++||. |++  ..++..++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence            4589999999999999999999999999875443 4444432222   11  1578999999995 674  345655554


Q ss_pred             HHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           90 QFAK----EHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        90 ~~~~----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ....    ...+.++.|||.+|+|+.+.++||...+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            3221    13455899999999999999999987654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.53  E-value=1.9e-14  Score=109.93  Aligned_cols=107  Identities=19%  Similarity=0.139  Sum_probs=76.7

Q ss_pred             EEEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCC
Q 031132            8 PIKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWL-EDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ...+.||||||..+        +......+++.+|++++|||+++..+..  ..|+ ..+.... .+.|+++|+||+|+.
T Consensus        54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAA  130 (301)
T ss_dssp             TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGC
T ss_pred             CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccC
Confidence            46789999999875        5566778899999999999998864433  2343 3333322 368999999999986


Q ss_pred             CCCCCCHHHHHHHHHHc-C-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEH-G-LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-~-~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ....    .....+..+ + .+++++||++|.|++++++.|.+.+
T Consensus       131 ~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          131 KYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             SSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            4321    022223332 3 4689999999999999999887654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.53  E-value=9.7e-14  Score=112.17  Aligned_cols=111  Identities=21%  Similarity=0.144  Sum_probs=81.4

Q ss_pred             eeCCEEEEEEEEeCCCch-hhh--------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132            3 TIDNKPIKLQIWDTAGQE-SFR--------SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN   73 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~-~~~--------~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n   73 (165)
                      .+++  ..+.+|||+|.. ++.        .....+++.+|++|+|||++++.+++... ++..+     .+.|+++|+|
T Consensus       287 ~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~N  358 (482)
T 1xzp_A          287 VIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVIN  358 (482)
T ss_dssp             EETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEE
T ss_pred             ecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEE
Confidence            4454  458999999988 543        23456789999999999999877665432 22222     3689999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           74 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        74 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      |+|+...  +..++...+. ..+.+++++||++|+|+++++++|.+.+...
T Consensus       359 K~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          359 KVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQEI  406 (482)
T ss_dssp             ECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTHHH
T ss_pred             Ccccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            9999643  3444444332 2346899999999999999999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.52  E-value=5.8e-14  Score=112.34  Aligned_cols=111  Identities=20%  Similarity=0.208  Sum_probs=78.4

Q ss_pred             eeCCEEEEEEEEeCCCchh---------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132            3 TIDNKPIKLQIWDTAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN   73 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n   73 (165)
                      .+++.  .+++|||+|++.         +...+..+++.||+++||+|+++..+..+  .++..+...  .++|+++|+|
T Consensus        45 ~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~N  118 (439)
T 1mky_A           45 EWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVAN  118 (439)
T ss_dssp             EETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEE
T ss_pred             EECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEe
Confidence            44555  478999999763         45567888999999999999987544322  222222222  2689999999


Q ss_pred             CCCCCCCCCCCHHHH-HHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           74 KCDLAHRRAVSTEEG-EQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        74 K~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      |+|+...  . .... ..+. .+++ +++++||++|.|+.++++++.+.+..
T Consensus       119 K~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          119 KAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             SCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence            9998421  0 1222 2332 4566 68999999999999999999988754

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.51  E-value=7e-14  Score=114.15  Aligned_cols=72  Identities=24%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ++...+.+.||||||+.+|...+..+++.+|++|+|+|+++..+......| ..+..   .++|+++++||+|+..
T Consensus        77 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           77 FPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             EEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             EEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            344456799999999999999999999999999999999987665554433 22222   4689999999999853

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.51  E-value=5.5e-14  Score=113.76  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=72.1

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN------HLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~------~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      ++.....+.||||+|+++|...+..++..+|++|+|+|+++..++.      .....+..+ ... ...|+++++||+|+
T Consensus       106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~-~~~~iIvviNK~Dl  183 (483)
T 3p26_A          106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL-GIHNLIIAMNKMDN  183 (483)
T ss_dssp             EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-HHT-TCCCEEEEEECGGG
T ss_pred             EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHc-CCCcEEEEEECcCc
Confidence            4455568999999999999999999999999999999999864432      222222222 221 23569999999999


Q ss_pred             CCCCCCCHHH----HHHHHHHc-----CCeEEEecCCCCCCHHHH
Q 031132           78 AHRRAVSTEE----GEQFAKEH-----GLIFMEASAKTAQNVEEA  113 (165)
Q Consensus        78 ~~~~~~~~~~----~~~~~~~~-----~~~~~~vSa~~~~~i~~l  113 (165)
                      .+......++    ...+....     +++++++||++|+|+.++
T Consensus       184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            6532222222    22333333     357999999999999853

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.50  E-value=7.9e-14  Score=110.63  Aligned_cols=113  Identities=15%  Similarity=0.132  Sum_probs=78.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC--CCH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VST   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~   85 (165)
                      ...+.||||||+++|.......+..+|++|+|+|+++..........+..+...  ...|+++++||+|+.....  ...
T Consensus        82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHH
Confidence            368999999999999887777788999999999999642112222222222222  2358999999999864321  112


Q ss_pred             HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           86 EEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        86 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +++..++..   .+++++++||++|+|+++++++|...+.
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            233334333   3578999999999999999998876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.48  E-value=1.5e-13  Score=111.10  Aligned_cols=107  Identities=21%  Similarity=0.166  Sum_probs=80.7

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--   83 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--   83 (165)
                      ..+.+|||||+++|...+...+..+|++|+|+|+++   +.+.+.+    ..+. .  .++|.++++||+|+.+....  
T Consensus        73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~-~--~~ip~IvviNK~Dl~~~~~~~~  145 (482)
T 1wb1_A           73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILD-H--FNIPIIVVITKSDNAGTEEIKR  145 (482)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHH-H--TTCCBCEEEECTTSSCHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHH-H--cCCCEEEEEECCCcccchhHHH
Confidence            578999999999999988999999999999999987   3333332    2222 2  36888999999999642111  


Q ss_pred             CHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           84 STEEGEQFAKEH----GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        84 ~~~~~~~~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..++...++...    +.+++++||++|+|+++++++|.+.+.
T Consensus       146 ~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          146 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            122344445444    567999999999999999999988775

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.48  E-value=3.8e-14  Score=113.33  Aligned_cols=111  Identities=19%  Similarity=0.255  Sum_probs=78.6

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----CCCC-eEEEEeeCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA----NANM-TIMLIGNKCDLA   78 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~-p~ivv~nK~Dl~   78 (165)
                      ++.....+.||||||+++|...+..++..+|++|+|+|+++ .+|+....|......+.    ..+. |+++++||+|+.
T Consensus        79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~  157 (435)
T 1jny_A           79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT  157 (435)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred             EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence            34445679999999999999999999999999999999998 66764433222211111    1244 689999999996


Q ss_pred             CCC------CCCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 031132           79 HRR------AVSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        79 ~~~------~~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~~  115 (165)
                      +..      ....+++..++...+     ++++++||++|+|+.++++
T Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            421      111234555666655     6799999999999986654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.48  E-value=7.8e-14  Score=111.64  Aligned_cols=108  Identities=24%  Similarity=0.242  Sum_probs=74.9

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMT-IMLIGNKCDL   77 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl   77 (165)
                      +.....+.||||||+++|...+...+..+|++|+|+|+++...   ++   .....+..+..   .++| +++++||+|+
T Consensus        91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD  167 (439)
T ss_pred             ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence            3445579999999999999999999999999999999988532   11   22222222222   3566 9999999998


Q ss_pred             CCCC------CCCHHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Q 031132           78 AHRR------AVSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        78 ~~~~------~~~~~~~~~~~~~~~------~~~~~vSa~~~~~i~~l~~  115 (165)
                      ....      .....+...++...+      ++++++||++|+|+.++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5321      011223334444444      4699999999999999766

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.47  E-value=4.3e-13  Score=110.84  Aligned_cols=108  Identities=24%  Similarity=0.225  Sum_probs=78.8

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC---
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV---   83 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~---   83 (165)
                      .+.||||||++.|..++...++.+|++|+|||+++   +.+++.+..    +. .  .++|+++++||+|+......   
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~-~--~~vPiIVViNKiDl~~~~~~~~~  143 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR-M--YRTPFVVAANKIDRIHGWRVHEG  143 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HH-H--TTCCEEEEEECGGGSTTCCCCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HH-H--cCCeEEEEecccccccccccccC
Confidence            58999999999999999999999999999999998   555554332    22 1  47899999999998542211   


Q ss_pred             ----------CHH----------HHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           84 ----------STE----------EGEQFAKEHG---------------LIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        84 ----------~~~----------~~~~~~~~~~---------------~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                                ...          +........+               ++++++||++|.|+.+++++|...+...
T Consensus       144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                      010          1111111222               3799999999999999999999877543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.47  E-value=6.7e-14  Score=111.85  Aligned_cols=106  Identities=20%  Similarity=0.102  Sum_probs=76.0

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC--C-
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--V-   83 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~-   83 (165)
                      ....+.||||||+++|...+..++..+|++|+|+|+++... .....++..+...  .-.|+++++||+|+.+...  . 
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence            34578999999999999988889999999999999988542 2333444433322  2236999999999964211  1 


Q ss_pred             -CHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 031132           84 -STEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        84 -~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l~~  115 (165)
                       ...+...++..++     ++++++||++|+|+.+++.
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence             1233445566666     6799999999999988543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.47  E-value=9.1e-14  Score=109.00  Aligned_cols=113  Identities=9%  Similarity=-0.001  Sum_probs=81.6

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEee-CCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGN-KCDLAHRRA   82 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~n-K~Dl~~~~~   82 (165)
                      +.....+.+|||||+++|.......++.+|++|+|+| +. ..+.....++..+...   ++|. ++++| |+|+ +...
T Consensus        56 ~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~  129 (370)
T 2elf_A           56 DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHA  129 (370)
T ss_dssp             CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHH
T ss_pred             ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHH
Confidence            3334568999999999998877778899999999999 54 3344555555544433   5676 88899 9998 4321


Q ss_pred             CCH--HHHHHHHHHc---CCeEEE--ecCCC---CCCHHHHHHHHHHHHHH
Q 031132           83 VST--EEGEQFAKEH---GLIFME--ASAKT---AQNVEEAFIKTAATIYK  123 (165)
Q Consensus        83 ~~~--~~~~~~~~~~---~~~~~~--vSa~~---~~~i~~l~~~l~~~i~~  123 (165)
                      ...  ++...++...   .+++++  +||++   +.|++++++.|.+.+-.
T Consensus       130 ~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          130 IDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            111  3344444433   368999  99999   99999999999987654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.46  E-value=4.6e-14  Score=111.83  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      ++.....+.||||||+++|...+...+..+|++|+|+|+++... .....++..+..   .++| +++++||+|+.....
T Consensus        70 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~  145 (405)
T 2c78_A           70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPE  145 (405)
T ss_dssp             EECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHH
T ss_pred             eccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHH
Confidence            34444678999999999999988889999999999999988643 334455554433   3678 889999999864211


Q ss_pred             C---CHHHHHHHHHHcC-----CeEEEecCCCCCC
Q 031132           83 V---STEEGEQFAKEHG-----LIFMEASAKTAQN  109 (165)
Q Consensus        83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~~~  109 (165)
                      .   ...+...++..++     ++++++||++|.|
T Consensus       146 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          146 LLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            1   1123445555555     5799999999987

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.45  E-value=5.1e-14  Score=112.57  Aligned_cols=106  Identities=15%  Similarity=0.087  Sum_probs=72.6

Q ss_pred             EEEEEEEeCCCch--------hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            8 PIKLQIWDTAGQE--------SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~--------~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      ...+.+|||+|++        .+...+..+++.||++|||+|+++..+...  .++..+...  .++|+++|+||+|+..
T Consensus        50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC--
T ss_pred             CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCcc
Confidence            3468999999985        677788889999999999999988655443  333333333  5789999999999854


Q ss_pred             CCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ....    ...+. ..++ +++++||++|.|+.++++++.+.+.
T Consensus       126 ~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          126 MRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             ---C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             chhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence            2211    11112 3455 6899999999999999999987764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=104.36  Aligned_cols=105  Identities=6%  Similarity=-0.014  Sum_probs=74.0

Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH---HHH-Hhc-CCCCeEEEEeeC-CCCCCCCCCCHHHHH
Q 031132           16 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DAR-QHA-NANMTIMLIGNK-CDLAHRRAVSTEEGE   89 (165)
Q Consensus        16 t~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~---~i~-~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~   89 (165)
                      .+||.+.+++|+.||.++|++|||+|++|...++ .+..+.   .+. ... ..+.|++|++|| .|+..  .++..++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            4789999999999999999999999999976443 333222   222 111 257999999997 58743  45555544


Q ss_pred             HHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           90 QFAK----EHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        90 ~~~~----~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ....    ...+.+..|||.+|+|+.+.++||.+.+..
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            3211    124558999999999999999999987643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.44  E-value=2e-13  Score=109.79  Aligned_cols=110  Identities=17%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhH--------hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN   73 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n   73 (165)
                      +.+++.  .+.+|||+|...+...++        .+++.+|++++|+|++++.+... ..|+..+     ...|+++|+|
T Consensus       267 i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~N  338 (462)
T 3geh_A          267 LVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMN  338 (462)
T ss_dssp             EEETTE--EEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEE
T ss_pred             EEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEE
Confidence            345654  579999999876554433        35789999999999998655543 3333333     2479999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           74 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        74 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      |+|+.......  ....+.  .+.+++++||++|.|+++++++|.+.+..
T Consensus       339 K~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          339 KIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             CTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             CCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            99996543332  000001  35679999999999999999999887754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.43  E-value=1.5e-13  Score=108.60  Aligned_cols=113  Identities=18%  Similarity=0.128  Sum_probs=78.2

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC-
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA-   82 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~-   82 (165)
                      +.....+.||||||+++|...+...+..+|++|+|+|+++..... ...++..+..   .++| +++++||+|+..... 
T Consensus        62 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~  137 (397)
T 1d2e_A           62 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEM  137 (397)
T ss_dssp             ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHH
T ss_pred             ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHH
Confidence            334457899999999999888888999999999999999854322 2333333322   3678 689999999864211 


Q ss_pred             --CCHHHHHHHHHHcC-----CeEEEecCCCCCC----------HHHHHHHHHHHH
Q 031132           83 --VSTEEGEQFAKEHG-----LIFMEASAKTAQN----------VEEAFIKTAATI  121 (165)
Q Consensus        83 --~~~~~~~~~~~~~~-----~~~~~vSa~~~~~----------i~~l~~~l~~~i  121 (165)
                        ....+...++..++     ++++++||++|.|          +.++++.|.+.+
T Consensus       138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence              11234555666665     5799999998765          666666665543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.43  E-value=6.2e-12  Score=98.38  Aligned_cols=121  Identities=24%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             eeeCCEEEEEEEEeCCCc---------hhhhhhhHhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCeEEE
Q 031132            2 ITIDNKPIKLQIWDTAGQ---------ESFRSITRSYYRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIML   70 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~~ad~vi~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~p~iv   70 (165)
                      +.+++.  .+.+|||+|.         +.+...++ .+..+|++++|+|++++.  ....+..|...+......+.|+++
T Consensus       221 i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~il  297 (364)
T 2qtf_A          221 IPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILV  297 (364)
T ss_dssp             EEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEE
T ss_pred             EEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEE
Confidence            456663  5789999997         22444443 578999999999998876  455555555555444325689999


Q ss_pred             EeeCCCCCCCCCCCH--HHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           71 IGNKCDLAHRRAVST--EEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        71 v~nK~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      |+||+|+.... ...  .....++..+   +.+++++||+++.|++++++.|.+.+.....
T Consensus       298 V~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          298 TLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             EEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             EEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence            99999986432 110  1122223443   2368999999999999999999887765443

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.42  E-value=3.3e-14  Score=114.64  Aligned_cols=107  Identities=20%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC--
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR--   81 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~--   81 (165)
                      ...+.||||||+++|...+...+..+|++|+|+|+++..   +|+...++...+......++| +++++||+|+....  
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~  199 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS  199 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence            356899999999999998888899999999999999862   232112222222211114677 99999999995321  


Q ss_pred             ----CCCHHHHHHHHHHc-------CCeEEEecCCCCCCHHHHH
Q 031132           82 ----AVSTEEGEQFAKEH-------GLIFMEASAKTAQNVEEAF  114 (165)
Q Consensus        82 ----~~~~~~~~~~~~~~-------~~~~~~vSa~~~~~i~~l~  114 (165)
                          .....+...++...       +++++++||++|+|+.+++
T Consensus       200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                01122345555555       3569999999999998766

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.40  E-value=4.2e-14  Score=115.41  Aligned_cols=109  Identities=21%  Similarity=0.217  Sum_probs=78.0

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC-CHHHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEG   88 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~   88 (165)
                      .+.||||||++.|..++..+++.+|++|+|+|+++....... .++..+.   ..++|+++++||+|+...... .....
T Consensus        53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l  128 (537)
T 3izy_P           53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKEL  128 (537)
T ss_dssp             CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHH
T ss_pred             EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHHHHHH
Confidence            588999999999999999999999999999999985443322 2222222   247899999999998643211 11111


Q ss_pred             HHH---HHHc--CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           89 EQF---AKEH--GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        89 ~~~---~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..+   +..+  .++++++||++|.|++++|++|...+.
T Consensus       129 ~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          129 LAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             HHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             HhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence            111   1111  247999999999999999999987653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.40  E-value=2.3e-13  Score=103.94  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=74.3

Q ss_pred             EEEEEEEeCCCch-h--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            8 PIKLQIWDTAGQE-S--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         8 ~~~~~l~Dt~G~~-~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ...+.+|||+|.. .        +......+++.+|++++|+|+++ -+  ....++......  .+.|+++++||+|+.
T Consensus        55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--GKAPVILAVNKVDNV  129 (301)
T ss_dssp             TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--SSSCEEEEEESTTTC
T ss_pred             CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--cCCCEEEEEECcccC
Confidence            3468899999997 3        22334566789999999999977 22  222333332222  468999999999985


Q ss_pred             CCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ............+...+++ .++++||.++.|++++++.+...+
T Consensus       130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            4111112333444444566 599999999999999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.40  E-value=5.1e-12  Score=101.08  Aligned_cols=116  Identities=19%  Similarity=0.158  Sum_probs=77.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhh------------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSI------------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM   69 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~------------~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i   69 (165)
                      +.++|.  .+.+|||+|..+....            ...+++.+|++++|+|+++..+....  ++......  .+.|++
T Consensus       223 i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~i  296 (439)
T 1mky_A          223 VFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASV  296 (439)
T ss_dssp             EEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEE
T ss_pred             EEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEE
Confidence            355666  4789999998543322            13467889999999999876555432  22222222  478999


Q ss_pred             EEeeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           70 LIGNKCDLAHRRAVSTEEGEQ-FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        70 vv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +++||+|+.+.......+... +...    .+.+++++||++|.|++++|+.+.+.+..
T Consensus       297 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          297 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             EEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999986544333333322 2222    25689999999999999999999876544

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.38  E-value=5e-13  Score=107.47  Aligned_cols=107  Identities=19%  Similarity=0.173  Sum_probs=75.0

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCe-EEEEeeCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLASWLEDARQHANANMT-IMLIGNKCD   76 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~D   76 (165)
                      ++.....+.||||||+++|...+...+..+|++|+|+|+++..   +|+   ....++..+. .  .++| +++++||+|
T Consensus        80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~--~~v~~iivviNK~D  156 (458)
T 1f60_A           80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T--LGVRQLIVAVNKMD  156 (458)
T ss_dssp             EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H--TTCCEEEEEEECGG
T ss_pred             EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H--cCCCeEEEEEEccc
Confidence            3445567999999999999999999999999999999998753   221   2333332222 2  3555 899999999


Q ss_pred             CCCCCC----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 031132           77 LAHRRA----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEA  113 (165)
Q Consensus        77 l~~~~~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l  113 (165)
                      +.+...    ....+...++..++     ++++++||++|+|+.++
T Consensus       157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            963111    11223444555555     57999999999998754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.38  E-value=6.4e-13  Score=115.68  Aligned_cols=113  Identities=18%  Similarity=0.142  Sum_probs=79.9

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      ++.....+.||||||+++|...+...+..+|++|+|+|+++... .....++..+...   ++| +++++||+|+.+...
T Consensus       354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e  429 (1289)
T 3avx_A          354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEE  429 (1289)
T ss_dssp             EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHH
T ss_pred             EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchh
Confidence            44455678999999999999888889999999999999988532 2334444444332   577 789999999964211


Q ss_pred             C---CHHHHHHHHHHcC-----CeEEEecCCCC--------CCHHHHHHHHHHH
Q 031132           83 V---STEEGEQFAKEHG-----LIFMEASAKTA--------QNVEEAFIKTAAT  120 (165)
Q Consensus        83 ~---~~~~~~~~~~~~~-----~~~~~vSa~~~--------~~i~~l~~~l~~~  120 (165)
                      .   ...+...++...+     ++++++||++|        .|+.++++.|...
T Consensus       430 ~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          430 LLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence            1   1234555666655     57999999999        3466666666543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.37  E-value=2.7e-13  Score=112.47  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=73.1

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCC-CeEEEEeeCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHANAN-MTIMLIGNKCDLAH   79 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~   79 (165)
                      ++.....+.||||||+++|...+..+++.+|++|+|+|+++..   ++.....+...+......+ .|++||+||+|+..
T Consensus       240 ~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~  319 (611)
T 3izq_1          240 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD  319 (611)
T ss_dssp             EECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred             EecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence            3444567999999999999999999999999999999998742   1100111111111111123 45999999999865


Q ss_pred             CCCCC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 031132           80 RRAVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEEA  113 (165)
Q Consensus        80 ~~~~~----~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~l  113 (165)
                      .....    ..+...++...+     ++++++||++|.|+.++
T Consensus       320 ~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          320 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            22111    122333444443     57999999999999876

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.33  E-value=5.9e-13  Score=106.99  Aligned_cols=107  Identities=14%  Similarity=0.070  Sum_probs=73.5

Q ss_pred             CEEEEEEEEeCCC--------chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            6 NKPIKLQIWDTAG--------QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         6 ~~~~~~~l~Dt~G--------~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .....+.+|||+|        ++.+...+..+++.+|++|||+|.++..+  ....++..+...  .++|+++|+||+|+
T Consensus        68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~  143 (456)
T 4dcu_A           68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDN  143 (456)
T ss_dssp             TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC--
T ss_pred             ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccc
Confidence            3345689999999        77888889999999999999999877432  223344444333  57899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ....    .....+ ...++ ..+++||++|.|+.++++.+.+.+
T Consensus       144 ~~~~----~~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          144 TEMR----ANIYDF-YSLGFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             -----------CCS-GGGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             hhhh----hhHHHH-HHcCCCceEEeecccccchHHHHHHHHhhc
Confidence            5321    111111 12343 478999999999999999988765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.33  E-value=2.1e-13  Score=106.67  Aligned_cols=116  Identities=14%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             eCCEEEEEEEEeCCCc-------hhhhhhhH-------hhhcCCc-------------EEEEEEeCCChhhHHHHH-HHH
Q 031132            4 IDNKPIKLQIWDTAGQ-------ESFRSITR-------SYYRGAA-------------GALLVYDITRRETFNHLA-SWL   55 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~-------~~~~~~~~-------~~~~~ad-------------~vi~v~D~~~~~s~~~~~-~~~   55 (165)
                      .++..+.+.+|||+|+       +.+..++.       .+++.++             +++|+++.+ ..++..+. .++
T Consensus        90 ~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~  168 (361)
T 2qag_A           90 ERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFM  168 (361)
T ss_dssp             --CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHH
T ss_pred             cCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHH
Confidence            3566678999999999       66777766       6666544             455555532 23344333 233


Q ss_pred             HHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           56 EDARQHANANMTIMLIGNKCDLAHRRAVST--EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        56 ~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ..+    ..++|+++|+||+|+.....+..  ..+..++...+++++++||+++.| ++.|.++...+....
T Consensus       169 ~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          169 KAI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            332    25789999999999865433322  345555666789999999999999 999999998887644

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.33  E-value=9.7e-13  Score=93.30  Aligned_cols=74  Identities=20%  Similarity=0.310  Sum_probs=61.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHhc----CCCCeEEEEeeCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRG----AAGALLVYDIT-RRETFNHLASWLEDARQHA----NANMTIMLIGNKCDLA   78 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~----ad~vi~v~D~~-~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~   78 (165)
                      .+.+.+|||+|++.+...+..++..    +|++|+|||++ +..++..+..|+..+....    ..+.|+++|+||+|+.
T Consensus        90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  169 (193)
T 2ged_A           90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  169 (193)
T ss_dssp             CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence            4467899999999988888888776    89999999999 8889999888887776542    2479999999999996


Q ss_pred             CCC
Q 031132           79 HRR   81 (165)
Q Consensus        79 ~~~   81 (165)
                      ...
T Consensus       170 ~~~  172 (193)
T 2ged_A          170 TAR  172 (193)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            544

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.32  E-value=1.3e-12  Score=98.91  Aligned_cols=110  Identities=13%  Similarity=0.084  Sum_probs=74.9

Q ss_pred             EEEEEEeCCCch-------------hhhhhhHhhhcCCcEEE-EEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            9 IKLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         9 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~ad~vi-~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      ..+.||||||..             .+..++..+++.++.++ +|+|+++..+..+...++..+.   ..+.|+++|+||
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK  201 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK  201 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence            578999999963             46678888999988776 7999987544433333333332   246899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHH--cC-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           75 CDLAHRRAVSTEEGEQFAKE--HG-LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        75 ~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +|+.................  .+ .+++++||++|.|++++++++.+.-
T Consensus       202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            99865443222222110001  12 2578899999999999999988743

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.31  E-value=3.4e-13  Score=109.26  Aligned_cols=104  Identities=21%  Similarity=0.270  Sum_probs=74.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC--CC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR--AV   83 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~   83 (165)
                      ..+.||||||++.|..++...+..+|++|+|+|+++.   .+.+.+    ..+. .  .++|+++++||+|+....  .+
T Consensus        51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~-~--~~vPiIVviNKiDl~~~~~~~v  123 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAK-A--AQVPVVVAVNKIDKPEADPDRV  123 (501)
T ss_dssp             SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHH-H--TTCCEEEEEECSSSSTTCCCCT
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHH-h--cCceEEEEEEeccccccCHHHH
Confidence            3578999999999999999999999999999999874   333322    2222 1  478999999999996421  11


Q ss_pred             CHH--HHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHH
Q 031132           84 STE--EGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        84 ~~~--~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ...  ....++..++  ++++++||++|.|++++|++|..
T Consensus       124 ~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          124 KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            000  0000112222  68999999999999999999864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.30  E-value=1.1e-11  Score=103.90  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=53.6

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ..+.+++|||+|+.+|...+..+++.+|++++|+|+++..... ...++..+..   .++|+++++||+|+.
T Consensus        72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence            3567899999999999999999999999999999988754332 2234444333   368999999999985

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.28  E-value=2.8e-11  Score=89.03  Aligned_cols=111  Identities=15%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             EEEEEEeCCCc-----------hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031132            9 IKLQIWDTAGQ-----------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKC   75 (165)
Q Consensus         9 ~~~~l~Dt~G~-----------~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~   75 (165)
                      ..+.+|||||.           ..+...+..+++++|++|+|+|++....  ....++..+.....  ...|+++|+||+
T Consensus        78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A           78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRK  155 (239)
T ss_dssp             EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred             ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence            35799999994           3455566667788999999999875332  11223333322111  246999999999


Q ss_pred             CCCCCCCCC------HHHHHHHHHHcCCeEEEecCCCC-----CCHHHHHHHHHHHH
Q 031132           76 DLAHRRAVS------TEEGEQFAKEHGLIFMEASAKTA-----QNVEEAFIKTAATI  121 (165)
Q Consensus        76 Dl~~~~~~~------~~~~~~~~~~~~~~~~~vSa~~~-----~~i~~l~~~l~~~i  121 (165)
                      |+.....+.      ....+.++...+..++.++...+     .++.++|..+...+
T Consensus       156 D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          156 DDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             GGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence            986543332      23566777788888888876644     57777777666555

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.27  E-value=1.7e-12  Score=97.66  Aligned_cols=112  Identities=13%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             CCEEEEEEEEeCCCch-------hhhhhh-------HhhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHH
Q 031132            5 DNKPIKLQIWDTAGQE-------SFRSIT-------RSYYRG-------------AAGALLVYDITRRETFNHLASWLED   57 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~-------~~~~~~-------~~~~~~-------------ad~vi~v~D~~~~~s~~~~~~~~~~   57 (165)
                      ++..+.+.+|||+|..       .+..++       ..++..             +|+++++++.+...-......++..
T Consensus        61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~  140 (274)
T 3t5d_A           61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR  140 (274)
T ss_dssp             --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred             CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence            4455689999999972       344443       444443             7899999987653222222223333


Q ss_pred             HHHhcCCCCeEEEEeeCCCCCCCCCCC--HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           58 ARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        58 i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      +..    ++|+++|+||+|+.......  ...+.......+++++++||.+++|+.+++.+|.+.
T Consensus       141 l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          141 LHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             Hhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            322    68999999999985322211  122344455678899999999999999998887654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.27  E-value=9.4e-12  Score=92.65  Aligned_cols=113  Identities=16%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             EEEEEEeCCCchhh-----------hhhhHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCeEEEEee-CC
Q 031132            9 IKLQIWDTAGQESF-----------RSITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGN-KC   75 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~-----------~~~~~~~~~~ad~vi~v~D~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~n-K~   75 (165)
                      ..+.||||||...+           ......+++.+|++|+|+|++.... ...+..++..+.... ...|+++++| |+
T Consensus        71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~  149 (260)
T 2xtp_A           71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKE  149 (260)
T ss_dssp             EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGG
T ss_pred             CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEccc
Confidence            45899999998653           2223346789999999999986221 122223333321111 1356666666 99


Q ss_pred             CCCCCCCCCH-------HHHHHHHHHcCCe---E--EEecCCCCCCHHHHHHHHHHHHHH
Q 031132           76 DLAHRRAVST-------EEGEQFAKEHGLI---F--MEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        76 Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      |+... .+..       ...+.++...+..   +  +++||+++.|++++|++|.+.+..
T Consensus       150 Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          150 DLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             GGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            99632 2211       2233455555533   2  789999999999999999988765

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.23  E-value=4.8e-11  Score=97.51  Aligned_cols=72  Identities=21%  Similarity=0.198  Sum_probs=53.7

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +++..+.+.+|||||+.+|...+..++..+|++|+|+|+++..... ...++..+.   ..++|+++++||+|+..
T Consensus        77 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           77 FPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             EEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             EEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            3444567999999999999988888999999999999998853221 222222221   14789999999999853

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.22  E-value=4.3e-11  Score=100.61  Aligned_cols=68  Identities=22%  Similarity=0.319  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      .+.+.||||+|+.+|...+..+++.+|++|+|+|+++..+......|.. +..   .++|+++++||+|+..
T Consensus        76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            4678999999999999999999999999999999998776665544443 322   3689999999999853

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.20  E-value=1.8e-10  Score=96.98  Aligned_cols=70  Identities=23%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +..+.+.||||+|+.+|...+..+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            3448899999999999999999999999999999999987554433333 22222   4689999999999853

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.17  E-value=1.2e-11  Score=96.47  Aligned_cols=108  Identities=14%  Similarity=0.141  Sum_probs=74.8

Q ss_pred             EEEEEeCCCchhh-------------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132           10 KLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus        10 ~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      .+.+|||||..++             ..+...+++++|++|+|+|+++.....  ..|+..+......+.|+++|+||+|
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence            4789999998765             667888999999999999876533221  2233333333335789999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      +.............+....+.+|+.+|+..+.++++.+..+..
T Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred             cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence            8755444444444334445778999999988887766554433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.16  E-value=4.6e-11  Score=100.47  Aligned_cols=111  Identities=13%  Similarity=0.147  Sum_probs=78.2

Q ss_pred             EEEEEeCCCchh---hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHH
Q 031132           10 KLQIWDTAGQES---FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus        10 ~~~l~Dt~G~~~---~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      .+.||||||...   ....+..+++.+|++|||+|+++..+..+...|...+..   .+.|+++|+||+|+.....++.+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e  251 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD  251 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence            489999999765   345667889999999999999988777666555433321   36789999999998543211111


Q ss_pred             ----------HHHH-----HHHH--------cCCeEEEecCC--------------CCCCHHHHHHHHHHHHHH
Q 031132           87 ----------EGEQ-----FAKE--------HGLIFMEASAK--------------TAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        87 ----------~~~~-----~~~~--------~~~~~~~vSa~--------------~~~~i~~l~~~l~~~i~~  123 (165)
                                ....     +...        ...+++++||+              ++.|+.+++..|.+.+..
T Consensus       252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                      1111     1111        12359999999              999999999999887754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.15  E-value=2.5e-10  Score=89.39  Aligned_cols=96  Identities=25%  Similarity=0.310  Sum_probs=72.8

Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHH----HHH
Q 031132           18 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FAK   93 (165)
Q Consensus        18 G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~   93 (165)
                      ..++|+.+++.+++.++++++|+|+++..     ..|...+.... .+.|+++|+||+|+.... ...+....    ++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            46789999999999999999999999853     34555555544 478999999999996432 33333333    355


Q ss_pred             HcCC---eEEEecCCCCCCHHHHHHHHHHH
Q 031132           94 EHGL---IFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        94 ~~~~---~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ..++   +++++||++|.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999988653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.13  E-value=3.6e-12  Score=105.39  Aligned_cols=103  Identities=23%  Similarity=0.188  Sum_probs=57.7

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCe-EEEEeeCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLASWLEDARQHANANMT-IMLIGNKCDLA   78 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~   78 (165)
                      .....+.||||||+++|...+...+..+|++|+|+|+++..   ++   ......+..+. .  .++| +++|+||+|+.
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~-~--lgip~iIvviNKiDl~  328 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR-A--LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH-H--SSCCCEEEEEECGGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH-H--cCCCeEEEEEeccccc
Confidence            34567899999999999888888899999999999998632   11   11112222222 2  3565 89999999986


Q ss_pred             CCCCCC----HHHHHHHH-HHcCC-----eEEEecCCCCCCHH
Q 031132           79 HRRAVS----TEEGEQFA-KEHGL-----IFMEASAKTAQNVE  111 (165)
Q Consensus        79 ~~~~~~----~~~~~~~~-~~~~~-----~~~~vSa~~~~~i~  111 (165)
                      ......    ..++..+. ...++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            421111    12233333 33454     69999999999998

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.13  E-value=3.8e-10  Score=89.62  Aligned_cols=113  Identities=15%  Similarity=0.097  Sum_probs=80.1

Q ss_pred             EEEEEEeCCCchh----hhhhhH---hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQES----FRSITR---SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~~~----~~~~~~---~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~   79 (165)
                      ..+.+||++|...    +..+..   ..++.++.+++++|++ ...+..+..+...+.....  ...|.++++||+|+..
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  283 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence            4578999999743    111222   2356799999999997 4456666666666554421  3579999999999854


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .  .........+...+.+++.+||.+++|+++++++|.+.+...
T Consensus       284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence            3  222333444445678899999999999999999999988653

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.11  E-value=4.3e-10  Score=94.60  Aligned_cols=68  Identities=22%  Similarity=0.234  Sum_probs=55.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      .+.+.||||+|+.+|...+..+++.+|++|+|+|+++..+......|.. +..   .+.|+++++||+|+..
T Consensus        74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            4578999999999999999999999999999999998766655544432 332   3689999999999853

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.09  E-value=4.3e-10  Score=83.45  Aligned_cols=112  Identities=17%  Similarity=-0.005  Sum_probs=69.0

Q ss_pred             EEEEEEeCCCchhhhhhhH------hhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HHhcCCCCeEEEEeeCCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~------~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+.||||+|+........      ..+.. +++++++|++...+........... ......+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4689999999987543322      24466 8999999876433222222111111 11111368999999999985432


Q ss_pred             CCCHHHHHH----------------------------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQ----------------------------FAKEHG--LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~----------------------------~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..  .+...                            ++..++  .+++++||++++|+++++++|.+.+..
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            11  11111                            023333  479999999999999999999877643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.07  E-value=7.2e-10  Score=79.40  Aligned_cols=106  Identities=14%  Similarity=0.163  Sum_probs=70.9

Q ss_pred             EEEEEeCCCch----------hhhhhhHhhh---cCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132           10 KLQIWDTAGQE----------SFRSITRSYY---RGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus        10 ~~~l~Dt~G~~----------~~~~~~~~~~---~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      .+.+|||+|..          .+......++   ..++++++++|+++..+..  .+..|+.    .  .+.|+++++||
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK  146 (210)
T 1pui_A           73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTK  146 (210)
T ss_dssp             TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEEC
T ss_pred             CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEec
Confidence            36899999974          2344444454   5789999999998865443  2222222    2  46899999999


Q ss_pred             CCCCCCCCC--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           75 CDLAHRRAV--STEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        75 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +|+......  ....+..++...+  +.++++||+++.|++++++.|.+.+
T Consensus       147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence            998542211  1223334444443  4688999999999999999887765

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.07  E-value=3.2e-10  Score=86.46  Aligned_cols=111  Identities=11%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             EEEEEEeCCCchh-------------hhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            9 IKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         9 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      ..+.||||||..+             +...+..+++.+|++++|+|+++.. .......++..+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            3689999999753             5667788899999999999974322 111111222222   1247899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCeEEEecCC---C---CCCHHHHHHHHHHHHH
Q 031132           75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAK---T---AQNVEEAFIKTAATIY  122 (165)
Q Consensus        75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~---~---~~~i~~l~~~l~~~i~  122 (165)
                      +|+..................+..++++|+.   +   +.|+.+++..+.+.+-
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            9986544322222221001122557777655   3   6788888888776654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.02  E-value=8.1e-10  Score=86.53  Aligned_cols=97  Identities=24%  Similarity=0.237  Sum_probs=71.0

Q ss_pred             CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHH----HH
Q 031132           17 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FA   92 (165)
Q Consensus        17 ~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~   92 (165)
                      ..++.|+..++.++..++++++|+|+++..+     .|...+.... .+.|+++|+||+|+.... ...+....    ++
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA  128 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence            4578899999999999999999999999763     3334444443 478999999999986432 33333333    34


Q ss_pred             HHcCC---eEEEecCCCCCCHHHHHHHHHHH
Q 031132           93 KEHGL---IFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        93 ~~~~~---~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ...++   .++.+||++|.|++++++.+.+.
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            55676   68999999999999999988654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.01  E-value=1.8e-09  Score=88.58  Aligned_cols=73  Identities=19%  Similarity=0.201  Sum_probs=57.3

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH   79 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~   79 (165)
                      +++++.+.++|.||||+.+|..-....++-+|++|+|+|+...........| ..+..   .++|.++++||+|...
T Consensus        94 ~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A           94 QFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             EEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred             EEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence            4555567799999999999999888889999999999999986544444333 33332   4799999999999853

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.98  E-value=1.8e-10  Score=89.66  Aligned_cols=106  Identities=10%  Similarity=0.041  Sum_probs=69.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--   85 (165)
                      .+.+.||||+|...   .....+..+|++++|+|++.......+..      ..  .+.|+++|+||+|+........  
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~~--~~~p~ivVlNK~Dl~~~~~~~~~~  239 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------GV--LELADIVVVNKADGEHHKEARLAA  239 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------TS--GGGCSEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------hH--hhcCCEEEEECCCCcChhHHHHHH
Confidence            35689999999543   22334589999999999876543322210      01  2468999999999853211110  


Q ss_pred             HHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           86 EEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        86 ~~~~~~~~~-------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .+.......       ++.+++++||++|+|+++++++|.+.+...
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            111111111       146799999999999999999999887653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.96  E-value=9.4e-10  Score=79.55  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=68.3

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      +.+.+|||+|+.....   .+...++.+++|+|++.....  ...+.   ..   .+.|+++++||+|+...........
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~---~~---~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP---EI---FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH---HH---HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh---hh---hhcCCEEEEecccCCcchhhHHHHH
Confidence            4578899998621111   111357899999998765321  11111   11   1478999999999854322345555


Q ss_pred             HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           89 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        89 ~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ...+...  +.+++++||++|.|++++|++|.+.+...
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            5555543  46899999999999999999998877554

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.94  E-value=2.4e-10  Score=87.15  Aligned_cols=113  Identities=13%  Similarity=0.176  Sum_probs=63.0

Q ss_pred             CEEEEEEEEeCCCc-------hhhhhhhH-------hhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHH
Q 031132            6 NKPIKLQIWDTAGQ-------ESFRSITR-------SYYRG-------------AAGALLVYDITRRETFNHLASWLEDA   58 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~-------~~~~~~~~-------~~~~~-------------ad~vi~v~D~~~~~s~~~~~~~~~~i   58 (165)
                      +....+.+|||+|+       +.+..+..       .+++.             +++++|+.+++.. +++.+..  ..+
T Consensus        73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l  149 (301)
T 2qnr_A           73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFM  149 (301)
T ss_dssp             -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHH
T ss_pred             CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHH
Confidence            33467899999998       55555554       44443             3446666665431 2322221  222


Q ss_pred             HHhcCCCCeEEEEeeCCCCCCCCCC--CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           59 RQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        59 ~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .... ...++++|+||+|+.....+  ..+++..++..++++++++||+++ |++++|..+.+.+..
T Consensus       150 ~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          150 KAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            2222 45799999999998643322  234567778888999999999999 999999999988864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.93  E-value=1.3e-09  Score=81.34  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=51.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhc---------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCeEEEEeeCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYR---------GAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~---------~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl   77 (165)
                      ..+.+|||||+.++....+.+++         ++|+++||+|++..........|+..+......  ..|+++|+||+|+
T Consensus        84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl  163 (262)
T 3def_A           84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF  163 (262)
T ss_dssp             EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred             eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence            36899999999776554444443         789999999987654222334566666655432  2499999999998


Q ss_pred             CCCCCC
Q 031132           78 AHRRAV   83 (165)
Q Consensus        78 ~~~~~~   83 (165)
                      ......
T Consensus       164 ~~~~~~  169 (262)
T 3def_A          164 SPPDEL  169 (262)
T ss_dssp             CCSTTC
T ss_pred             CCCCCc
Confidence            544333

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.86  E-value=1.4e-09  Score=85.99  Aligned_cols=38  Identities=26%  Similarity=0.263  Sum_probs=24.3

Q ss_pred             EEEEEEEeCCCchh----hhhhhH---hhhcCCcEEEEEEeCCCh
Q 031132            8 PIKLQIWDTAGQES----FRSITR---SYYRGAAGALLVYDITRR   45 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~----~~~~~~---~~~~~ad~vi~v~D~~~~   45 (165)
                      .+.++||||||...    ...++.   .+++.+|++++|+|+++.
T Consensus        70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            57899999999864    233444   346899999999999874

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.85  E-value=2.9e-09  Score=91.33  Aligned_cols=70  Identities=21%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ++..+.++||||+|+.+|...+..+++.+|++|+|||+++..++.....|.... .   .++|+++++||+|+.
T Consensus        94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            455789999999999999999999999999999999999987776655454322 1   468999999999985

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.84  E-value=1.1e-08  Score=77.40  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=69.2

Q ss_pred             eCCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHH
Q 031132           15 DTAGQE-SFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF   91 (165)
Q Consensus        15 Dt~G~~-~~~~~~~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~   91 (165)
                      ..||+. +....+...++.+|++++|+|++++.+..  .+..++        .++|.++|+||+||....  ..+....+
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~~   74 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKEH   74 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHHH
Confidence            356764 44555666789999999999999986653  333332        468999999999995421  11222333


Q ss_pred             HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           92 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        92 ~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ....+++++++||.++.|++++++.+.+.+...
T Consensus        75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            445578999999999999999999887776543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.83  E-value=2.1e-10  Score=89.23  Aligned_cols=108  Identities=14%  Similarity=0.094  Sum_probs=66.5

Q ss_pred             EEEEEEeCCCch-------------hhhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            9 IKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         9 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~ad-~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      ..+.||||||..             .+..+...|+..++ ++++|+|++....-.+...++.   .....+.|+++|+||
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~---~~~~~~~~~i~V~NK  206 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAK---EVDPQGQRTIGVITK  206 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHH---HHCTTCTTEEEEEEC
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHH---HhCcCCCceEEEecc
Confidence            568999999963             45667778886665 5555666654322222222222   222357899999999


Q ss_pred             CCCCCCCCCCHHHHHH--HHHHcCC-eEEEecCCCCCCHHHHHHHHHH
Q 031132           75 CDLAHRRAVSTEEGEQ--FAKEHGL-IFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        75 ~Dl~~~~~~~~~~~~~--~~~~~~~-~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      +|+.............  +....++ +++++||+++.|++++++++..
T Consensus       207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            9986543322221111  0011232 4678999999999999998876

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.81  E-value=4.7e-09  Score=78.56  Aligned_cols=74  Identities=12%  Similarity=0.043  Sum_probs=49.0

Q ss_pred             EEEEEEEEeCCCchhhhhhh-------Hhh--hcCCcEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCC--CeEEEEeeC
Q 031132            7 KPIKLQIWDTAGQESFRSIT-------RSY--YRGAAGALLVYDITRRETFN-HLASWLEDARQHANAN--MTIMLIGNK   74 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~-------~~~--~~~ad~vi~v~D~~~~~s~~-~~~~~~~~i~~~~~~~--~p~ivv~nK   74 (165)
                      ..+.+.+|||||+.++....       ..+  ...+|++++|+|++... +. ....|+..+......+  .|+++|+||
T Consensus        85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK  163 (270)
T 1h65_A           85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTH  163 (270)
T ss_dssp             TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred             CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence            34569999999997654221       122  34799999999986532 32 2335666665554222  699999999


Q ss_pred             CCCCCCC
Q 031132           75 CDLAHRR   81 (165)
Q Consensus        75 ~Dl~~~~   81 (165)
                      +|+....
T Consensus       164 ~Dl~~~~  170 (270)
T 1h65_A          164 AQFSPPD  170 (270)
T ss_dssp             CSCCCGG
T ss_pred             cccCCcC
Confidence            9986443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.79  E-value=4.2e-09  Score=81.55  Aligned_cols=103  Identities=12%  Similarity=0.017  Sum_probs=64.5

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--H
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--E   86 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~   86 (165)
                      +.+.||||+|.......   ....+|++++|+|++....+..+..   .   .  .+.|.++|+||+|+........  .
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~---~--~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---G---L--MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---H---H--HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---h---h--hcccCEEEEECCCCCChHHHHHHHH
Confidence            56899999997654332   4689999999999976532211110   0   0  1367899999999854211110  1


Q ss_pred             HHHHHHHHc-------CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           87 EGEQFAKEH-------GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        87 ~~~~~~~~~-------~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +........       ..+++++||++|.|++++++.|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            122111121       346899999999999999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.74  E-value=8.8e-09  Score=85.90  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=56.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +++.++.+.++|.||||+.+|......-++-+|++|+|+|+...-.... ...+..+...   ++|.++++||+|..
T Consensus        60 ~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~  132 (638)
T 3j25_A           60 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQN  132 (638)
T ss_dssp             CCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSS
T ss_pred             EEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEeccccc
Confidence            3455666779999999999999988889999999999999988643332 2333333333   68999999999974

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.68  E-value=5.7e-09  Score=82.89  Aligned_cols=108  Identities=14%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             EEEEEEEEeCCCchhh-------hhh------------------hHhhhcCCc--EEEEEEeCCChhhHHHHH-HHHHHH
Q 031132            7 KPIKLQIWDTAGQESF-------RSI------------------TRSYYRGAA--GALLVYDITRRETFNHLA-SWLEDA   58 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~-------~~~------------------~~~~~~~ad--~vi~v~D~~~~~s~~~~~-~~~~~i   58 (165)
                      ....+.+|||+|...+       ..+                  .+.++.+++  +++|+.+++. .++.... .|+..+
T Consensus        86 ~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L  164 (418)
T 2qag_C           86 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL  164 (418)
T ss_dssp             -CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH
T ss_pred             cccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH
Confidence            3347899999998653       111                  122344555  4555555431 1233332 355444


Q ss_pred             HHhcCCCCeEEEEeeCCCCCCCCCCCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           59 RQHANANMTIMLIGNKCDLAHRRAVST--EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        59 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      .    .++|+|+|+||+|+.....+..  ..+...+...+++++++||.+++++.++|..+..
T Consensus       165 ~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          165 H----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             T----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             h----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence            2    3689999999999865443333  4556667778999999999999999987776654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.67  E-value=1.6e-07  Score=72.94  Aligned_cols=102  Identities=10%  Similarity=0.031  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      +.+.|+||+|....   .......+|++++|+|++.......+..      ..  ...|.++++||+|+...... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~i--l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------GI--IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------HH--HhcCCEEEEeeecCCCchhH-HHHH
Confidence            45789999996421   2345679999999999987532221111      11  24688999999998531110 0111


Q ss_pred             HHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           89 EQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        89 ~~~~~----------~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..+..          .+..+++++||+++.|+++++++|.+.+-
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            11211          12346899999999999999999988763

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.61  E-value=3.6e-07  Score=77.06  Aligned_cols=68  Identities=21%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +.+.++|.||||+.+|..-....++-+|++|+|+|+...-.......| ......   ++|.++++||+|..
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH---TCCEEEEEECSSST
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc---CCCeEEEEcccccc
Confidence            467899999999999999888899999999999999886544433333 333333   68999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.55  E-value=2e-08  Score=84.91  Aligned_cols=108  Identities=14%  Similarity=0.095  Sum_probs=68.2

Q ss_pred             EEEEEeCCCchh-------------hhhhhHhhh-cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132           10 KLQIWDTAGQES-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus        10 ~~~l~Dt~G~~~-------------~~~~~~~~~-~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      .+.|+||||...             ...+...|+ ..+|++++|+|++......+...++..+   ...+.|+++|+||+
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L---~~~g~pvIlVlNKi  227 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQGQRTIGVITKL  227 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH---CTTCSSEEEEEECT
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH---HhcCCCEEEEEeCc
Confidence            367999999543             334455555 5789999999998753322222222222   22468999999999


Q ss_pred             CCCCCCCCCHHHHHHHH--HHcC-CeEEEecCCCCCCHHHHHHHHHHH
Q 031132           76 DLAHRRAVSTEEGEQFA--KEHG-LIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        76 Dl~~~~~~~~~~~~~~~--~~~~-~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      |+...............  ...+ .+++.+||++|.|++++++.+...
T Consensus       228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            98654433222111000  0112 246789999999999999988763

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.50  E-value=6.4e-08  Score=79.43  Aligned_cols=67  Identities=22%  Similarity=0.321  Sum_probs=51.5

Q ss_pred             EEEEEeCCCchh-----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132           10 KLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus        10 ~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      .+.||||+|...           +...+..++..+|++|+|+|+++.........++..+..   .+.|+++|+||+|+.
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV  231 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence            588999999865           557778889999999999999875444445555554432   357999999999986


Q ss_pred             C
Q 031132           79 H   79 (165)
Q Consensus        79 ~   79 (165)
                      .
T Consensus       232 ~  232 (550)
T 2qpt_A          232 E  232 (550)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.44  E-value=5e-08  Score=74.48  Aligned_cols=91  Identities=13%  Similarity=0.141  Sum_probs=61.0

Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--CHHHHHHHHHHcCCe
Q 031132           22 FRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLI   98 (165)
Q Consensus        22 ~~~~~~~~~~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~   98 (165)
                      ...+.+..+.++|.+++|+|+.++. +...+..++.....   .++|.+||+||+||.+....  ............|++
T Consensus        76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~  152 (307)
T 1t9h_A           76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD  152 (307)
T ss_dssp             SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence            3445566789999999999998654 44445554443332   46899999999999643210  012333344456899


Q ss_pred             EEEecCCCCCCHHHHHH
Q 031132           99 FMEASAKTAQNVEEAFI  115 (165)
Q Consensus        99 ~~~vSa~~~~~i~~l~~  115 (165)
                      ++.+||.++.|+++++.
T Consensus       153 v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          153 VYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EEECCHHHHTTCTTTGG
T ss_pred             EEEEecCCCCCHHHHHh
Confidence            99999998888765544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.39  E-value=8.6e-06  Score=63.49  Aligned_cols=41  Identities=15%  Similarity=0.141  Sum_probs=29.5

Q ss_pred             CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132           65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      .+|+++++|+.|...........+..++...+.+++++||+
T Consensus       199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence            48999999999964212223455666777778899999965

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.37  E-value=1.9e-07  Score=69.73  Aligned_cols=90  Identities=14%  Similarity=0.104  Sum_probs=60.1

Q ss_pred             CCchh-hhhhhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHH
Q 031132           17 AGQES-FRSITRSYYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK   93 (165)
Q Consensus        17 ~G~~~-~~~~~~~~~~~ad~vi~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~   93 (165)
                      ||+.. -.......++++|++++|+|++++.+...  +. ++         ++|.++|+||+||....  ..+....+..
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~--~~~~~~~~~~   72 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEK--TTKKWVEFFK   72 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHH--HHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHH--HHHHHHHHHH
Confidence            45532 23345567899999999999998765432  21 11         68999999999995421  1122233444


Q ss_pred             HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           94 EHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        94 ~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ..++++ .+||.++.|+++++..+..
T Consensus        73 ~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           73 KQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            567888 9999999999998887643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.36  E-value=8e-07  Score=68.67  Aligned_cols=104  Identities=8%  Similarity=0.031  Sum_probs=62.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      .+.+.|+||+|...-..   .....+|.+++|+|++.......+...   +.     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            35689999999754221   235789999999998654321111111   11     23557777999974322111122


Q ss_pred             HHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           88 GEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        88 ~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .+.+...          +..+++.+||+++.|++++++.|.+..-
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2222221          1346899999999999999999988654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.31  E-value=2e-06  Score=67.16  Aligned_cols=52  Identities=15%  Similarity=0.111  Sum_probs=36.1

Q ss_pred             CCeEEEEeeCCCCC--CC-CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 031132           65 NMTIMLIGNKCDLA--HR-RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  116 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~  116 (165)
                      .+|+++++||.|..  +. .......+..++...+.+++++||+...++.++.+.
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE  255 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence            37999999999842  21 123345666777777899999999886666655443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.26  E-value=3e-06  Score=65.90  Aligned_cols=85  Identities=14%  Similarity=0.166  Sum_probs=56.5

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC-HHHHHHHHHHcCCeEEEecCCCC
Q 031132           29 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQFAKEHGLIFMEASAKTA  107 (165)
Q Consensus        29 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSa~~~  107 (165)
                      ...++|.+++|.+..-..+...+..++......   ++|++||+||+||....... ...........|++++.+||.++
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            468999999887654333455555555544333   67889999999995432100 11122334456899999999999


Q ss_pred             CCHHHHHHH
Q 031132          108 QNVEEAFIK  116 (165)
Q Consensus       108 ~~i~~l~~~  116 (165)
                      .|++++...
T Consensus       204 ~gl~~L~~~  212 (358)
T 2rcn_A          204 DGLKPLEEA  212 (358)
T ss_dssp             BTHHHHHHH
T ss_pred             cCHHHHHHh
Confidence            999987764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.25  E-value=1.1e-06  Score=63.42  Aligned_cols=59  Identities=19%  Similarity=0.137  Sum_probs=45.7

Q ss_pred             CCeEEEEeeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           65 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        65 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..|.++++||+|+.........+...++...  +.+++++||++|.|++++|++|.+.+..
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            3678999999998543334556666666554  5789999999999999999999887643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.0017  Score=50.76  Aligned_cols=88  Identities=11%  Similarity=0.038  Sum_probs=53.9

Q ss_pred             EEEEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQESF-------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~   79 (165)
                      .+++|+||||....       .......++.+|++++|+|++++..  ....+...+.....  ...|.++++||.|...
T Consensus       119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g  196 (376)
T 4a9a_A          119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGG  196 (376)
T ss_dssp             EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred             cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence            35889999997432       1122344678999999999998732  22222233332221  4578888999999632


Q ss_pred             --------CCCCCHHHHHHHHHHcCCe
Q 031132           80 --------RRAVSTEEGEQFAKEHGLI   98 (165)
Q Consensus        80 --------~~~~~~~~~~~~~~~~~~~   98 (165)
                              ....+.++...+...+.+.
T Consensus       197 i~i~~~~~~~~l~~eeik~il~~~~lt  223 (376)
T 4a9a_A          197 ISITNTVPLTHLGNDEIRAVMSEYRIN  223 (376)
T ss_dssp             EEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred             hhhhcchhhhhccHHHHHHHHHHhccc
Confidence                    1235566666665555543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.39  E-value=0.00023  Score=57.81  Aligned_cols=101  Identities=13%  Similarity=0.053  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCchhhh-hhhHh---h--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCC
Q 031132            9 IKLQIWDTAGQESFR-SITRS---Y--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAHRR   81 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~-~~~~~---~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~   81 (165)
                      +.+.|+||+|..... .++..   .  +..+|.+++|+|++......   .....+...    .|+ .+|+||.|.....
T Consensus       184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D~~~~~  256 (504)
T 2j37_W          184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLDGHAKG  256 (504)
T ss_dssp             CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTTSCCCC
T ss_pred             CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCccccch
Confidence            468999999986421 11111   1  22789999999998754321   122222221    464 8889999985332


Q ss_pred             CCCHHHHHHHHHHcCCeE------------------EEecCCCCCC-HHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIF------------------MEASAKTAQN-VEEAFIKTAAT  120 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~------------------~~vSa~~~~~-i~~l~~~l~~~  120 (165)
                      ..    ........+.|+                  +++|+..|.| +.++++++.+.
T Consensus       257 g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          257 GG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             HH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            11    122233445543                  3468899999 99988888765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.70  E-value=0.0077  Score=48.06  Aligned_cols=86  Identities=16%  Similarity=0.046  Sum_probs=51.3

Q ss_pred             EEEEEEeCCCchhhh-----hhhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            9 IKLQIWDTAGQESFR-----SITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~-----~~~~-~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +.+.++||+|.....     .+.. .....+|.+++|+|++........   ...+...   -.+..+|+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCcc---
Confidence            457899999964321     1111 113367999999999875332222   2333322   245678899999743   


Q ss_pred             CCHHHHHHHHHHcCCeEEEecC
Q 031132           83 VSTEEGEQFAKEHGLIFMEASA  104 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vSa  104 (165)
                       ..-.+..+....+.|+.+++.
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC
T ss_pred             -cccHHHHHHHHHCCCEEEEEc
Confidence             223344555667889877764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.65  E-value=0.0014  Score=51.66  Aligned_cols=36  Identities=17%  Similarity=0.028  Sum_probs=24.3

Q ss_pred             EEEEEeCCCchhhhh-------hhHhhhcCCcEEEEEEeCCCh
Q 031132           10 KLQIWDTAGQESFRS-------ITRSYYRGAAGALLVYDITRR   45 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~-------~~~~~~~~ad~vi~v~D~~~~   45 (165)
                      .+++|||+|..++..       .+..+++.+|++++|+|+++.
T Consensus        87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            589999999976543       566788999999999999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.33  E-value=0.053  Score=42.56  Aligned_cols=35  Identities=20%  Similarity=0.157  Sum_probs=26.8

Q ss_pred             EEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCC
Q 031132           10 KLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITR   44 (165)
Q Consensus        10 ~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~   44 (165)
                      .+.+||++|...       ....+...++.+|++++|+|+.+
T Consensus        86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             EEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            579999999532       33345566789999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.93  E-value=0.042  Score=41.41  Aligned_cols=91  Identities=16%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCchh--hhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC
Q 031132            9 IKLQIWDTAGQES--FRS-ITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAH   79 (165)
Q Consensus         9 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~   79 (165)
                      +.+.+.||+|...  ... +..     .....+|.+++|+|+.....   .......+..    ..+ ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            4578999999876  321 221     12447899999999875322   2222222222    245 678899999642


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  112 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  112 (165)
                          .......+....+.|+.+++  +|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                22334556667788987776  4666544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.33  E-value=0.04  Score=43.79  Aligned_cols=90  Identities=14%  Similarity=0.089  Sum_probs=53.8

Q ss_pred             EEEEEEeCCCchh--hh-hh---hHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQES--FR-SI---TRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~--~~-~~---~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+.+.||+|...  .. .+   ....  .-..+.+++|+|+........   ....+...   -.+..+|+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc-
Confidence            3467999999643  11 11   1111  225699999999987543222   22333333   246788999999743 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNV  110 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  110 (165)
                         ..-.........+.|+.+++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               233445556667999888875  6554

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.78  E-value=0.11  Score=36.16  Aligned_cols=85  Identities=11%  Similarity=0.003  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCCCCCCCHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTE   86 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~   86 (165)
                      +.+.++|+++..  .......+..+|.+|+++.++...  ..+...+..+....  ..+.++.+|.|+.|....  . ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence            457899999876  334455667799999999886544  55666666665443  235678999999985321  1 22


Q ss_pred             HHHHHHHHcCCeEE
Q 031132           87 EGEQFAKEHGLIFM  100 (165)
Q Consensus        87 ~~~~~~~~~~~~~~  100 (165)
                      +...+...++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            33444444555543

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.31  E-value=0.51  Score=33.62  Aligned_cols=88  Identities=11%  Similarity=0.092  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      +-+.++|+++...  ......+..+|.+|+++.++ ..+...+...+..+.........+.+|.|+.+...  ....+  
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~--  191 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD--  191 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH--
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH--
Confidence            4578899987542  24455677899999999874 56677777777776654322456788999998532  23332  


Q ss_pred             HHHHHHcCCeEEEecC
Q 031132           89 EQFAKEHGLIFMEASA  104 (165)
Q Consensus        89 ~~~~~~~~~~~~~vSa  104 (165)
                       .+.+.++.+++.+-.
T Consensus       192 -~~~~~~~~~v~~~ip  206 (245)
T 3ea0_A          192 -EIEKVIGRPISKRIP  206 (245)
T ss_dssp             -HHHHHHTSCEEEEEC
T ss_pred             -HHHHHhCCCeEEECC
Confidence             334456777665533

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.30  E-value=0.45  Score=37.74  Aligned_cols=83  Identities=16%  Similarity=0.050  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-e-EEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-T-IMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~-~~~---~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ivv~nK~Dl~~~   80 (165)
                      +.+.++||+|...... +..   ..  +..+|.+++|+|+.....   .......+.    ... | ..+|+||.|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence            4578999999764221 111   11  236899999999876532   212122221    234 5 8889999997432


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEe
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEA  102 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v  102 (165)
                      .    .....+....+.++.++
T Consensus       254 ~----g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 G----GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----HHHHHHHHHSSCCEEEE
T ss_pred             h----HHHHHHHHHHCCCEEEe
Confidence            1    12334555667775554

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=93.30  E-value=0.8  Score=32.18  Aligned_cols=85  Identities=13%  Similarity=0.060  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCc-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHH
Q 031132            9 IKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus         9 ~~~~l~Dt~G~-~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      +-+.+.|+++. ...  .....+..+|.+|+++.++ ..+...+...+..+....  +.++.+|.|+.+-... .. ..+
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~~-~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-KD-GDE  140 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-CH-HHH
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-hH-HHH
Confidence            44789999886 432  3345667899999999874 455666666666665532  4568899999985320 11 233


Q ss_pred             HHHHHHHcCCeEE
Q 031132           88 GEQFAKEHGLIFM  100 (165)
Q Consensus        88 ~~~~~~~~~~~~~  100 (165)
                      ......+++.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            4444444665543

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=91.85  E-value=0.68  Score=33.59  Aligned_cols=64  Identities=11%  Similarity=0.026  Sum_probs=44.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      +-+.++|+++...  ......+..+|.+|+++.++. .+...+...+..+.... .+.++.+|+|+.+
T Consensus       145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~  208 (267)
T 3k9g_A          145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLN-LFLPIFLIITRFK  208 (267)
T ss_dssp             CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred             CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence            4578999987652  334455667999999999854 45566666666665443 3567889999994

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=91.80  E-value=1.9  Score=30.42  Aligned_cols=65  Identities=11%  Similarity=-0.022  Sum_probs=44.7

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +-+.++|+++...  ......+..+|.+|+++.++ ..+...+...+..+...  ......+|.|+.+-.
T Consensus       112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~  176 (237)
T 1g3q_A          112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSC
T ss_pred             CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC--CCceEEEEEecCCcc
Confidence            4578899987643  33455678899999999874 45566666666666544  224567889999853

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=91.60  E-value=2  Score=30.94  Aligned_cols=83  Identities=8%  Similarity=-0.044  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG   88 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~   88 (165)
                      +-+.++|+++...  ......+..+|.+|+++.++ ..+...+...+..+...  ....+.+|.|+.+-....    ...
T Consensus       111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~~~~----~~~  181 (263)
T 1hyq_A          111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL--GTKVLGVVVNRITTLGIE----MAK  181 (263)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTTTHH----HHH
T ss_pred             CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc--CCCeeEEEEccCCccccc----chH
Confidence            4578999997643  33445567899999999864 45566666666666554  224566889999853211    233


Q ss_pred             HHHHHHcCCeEE
Q 031132           89 EQFAKEHGLIFM  100 (165)
Q Consensus        89 ~~~~~~~~~~~~  100 (165)
                      ..+....+.+++
T Consensus       182 ~~~~~~~~~~~~  193 (263)
T 1hyq_A          182 NEIEAILEAKVI  193 (263)
T ss_dssp             HHHHHHTTSCEE
T ss_pred             HHHHHHhCCCeE
Confidence            444455666643

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=91.58  E-value=1.5  Score=33.70  Aligned_cols=123  Identities=11%  Similarity=0.054  Sum_probs=57.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-----------------CCC-----
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-----------------NAN-----   65 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~-----------------~~~-----   65 (165)
                      .+-+.++|++...  .......+..+|.+|+++.++ ..++..+...+..+....                 ++.     
T Consensus       153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (361)
T 3pg5_A          153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKT  229 (361)
T ss_dssp             CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHT
T ss_pred             CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccc
Confidence            4567899999654  344455567799999999874 444444444333332221                 001     


Q ss_pred             ------------C-eEEEEeeCCCCCCCCC---------CCHHHHH-----------------------------HHHHH
Q 031132           66 ------------M-TIMLIGNKCDLAHRRA---------VSTEEGE-----------------------------QFAKE   94 (165)
Q Consensus        66 ------------~-p~ivv~nK~Dl~~~~~---------~~~~~~~-----------------------------~~~~~   94 (165)
                                  . ..=+|.|..|......         .-.....                             ..++.
T Consensus       230 ~~~~~~g~~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~  309 (361)
T 3pg5_A          230 RPLRLGGFDGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQD  309 (361)
T ss_dssp             SSSCTTSSSSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-----------
T ss_pred             cccccccccccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHH
Confidence                        2 2447889998643211         0011111                             12223


Q ss_pred             cCCeEEEecCCC---------CCCHHHHHHHHHHHHHHHHhcCcccCC
Q 031132           95 HGLIFMEASAKT---------AQNVEEAFIKTAATIYKKIQDGVFDVS  133 (165)
Q Consensus        95 ~~~~~~~vSa~~---------~~~i~~l~~~l~~~i~~~~~~~~~~~~  133 (165)
                      .+.|++.+++.+         ..+..+.|..|...|+++....+.+..
T Consensus       310 ~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~~~  357 (361)
T 3pg5_A          310 VHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELEHH  357 (361)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHCCCC----
T ss_pred             HCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhc
Confidence            355677777644         558899999999999999888877654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=91.56  E-value=1.9  Score=33.93  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             EEEEEeCCCchh----hhhhhH-hhhcCCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC----
Q 031132           10 KLQIWDTAGQES----FRSITR-SYYRGAAGALLVYDIT--RRETFNHLASWLEDARQHANANMTIMLIGNKCDLA----   78 (165)
Q Consensus        10 ~~~l~Dt~G~~~----~~~~~~-~~~~~ad~vi~v~D~~--~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~----   78 (165)
                      .+.+||++|...    ...... .-+...+.+++ ++..  ...... +.   ..+..   .+.|+++|.||.|+.    
T Consensus       121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~-la---~aL~~---~~~p~~lV~tkpdlllLDE  192 (413)
T 1tq4_A          121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDID-IA---KAISM---MKKEFYFVRTKVDSDITNE  192 (413)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHH-HH---HHHHH---TTCEEEEEECCHHHHHHHH
T ss_pred             CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHH-HH---HHHHh---cCCCeEEEEecCcccccCc
Confidence            367899998532    112221 12344466555 7775  322111 21   22222   368999999999963    


Q ss_pred             ---CCCCCCHHHHH----HHH----HHcC---CeEEEecC--CCCCCHHHHHHHHHHHH
Q 031132           79 ---HRRAVSTEEGE----QFA----KEHG---LIFMEASA--KTAQNVEEAFIKTAATI  121 (165)
Q Consensus        79 ---~~~~~~~~~~~----~~~----~~~~---~~~~~vSa--~~~~~i~~l~~~l~~~i  121 (165)
                         .-+.....+..    .+.    .+.+   -.++.+|+  ..+.|++++.+.+.+.+
T Consensus       193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence               11222333322    222    1222   24788999  66778999888887654

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=90.79  E-value=1.8  Score=31.23  Aligned_cols=66  Identities=15%  Similarity=0.161  Sum_probs=41.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH---HhcCCCCeEE-EEeeCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR---QHANANMTIM-LIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~---~~~~~~~p~i-vv~nK~Dl   77 (165)
                      +-+.++|+++....  .....+..+|.+|+++.++. .+...+...+..+.   ...+.+.+++ +|.|+.+-
T Consensus       112 yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~  181 (257)
T 1wcv_1          112 YDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG  181 (257)
T ss_dssp             CSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred             CCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence            45789999976432  22344567999999999865 34444444444433   3223456764 89999985

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=90.55  E-value=0.92  Score=32.94  Aligned_cols=90  Identities=16%  Similarity=0.169  Sum_probs=51.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCC-----CC
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAH-----RR   81 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~-----~~   81 (165)
                      .+-+.++|+++...........+..+|.+|++..++. .+...+...+..+...   +.+++ +|.|+.|...     ..
T Consensus       128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~  203 (262)
T 2ph1_A          128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHKS  203 (262)
T ss_dssp             SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCEE
T ss_pred             CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCccccccc
Confidence            4568899999764322222222236899999998764 3455555555555432   46666 8999987411     10


Q ss_pred             CC-CHHHHHHHHHHcCCeEEE
Q 031132           82 AV-STEEGEQFAKEHGLIFME  101 (165)
Q Consensus        82 ~~-~~~~~~~~~~~~~~~~~~  101 (165)
                      .+ .......+...++.+++.
T Consensus       204 ~~~~~~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          204 YIFGEGKGESLAKKYNIGFFT  224 (262)
T ss_dssp             CTTCCCCHHHHHHHTTCSEEE
T ss_pred             ccccccHHHHHHHHcCCCeEE
Confidence            01 111234455567777654

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=89.76  E-value=1.4  Score=31.20  Aligned_cols=63  Identities=11%  Similarity=0.019  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      +-+.++|+++....  .....+..+|.+|+++.++ ..++..+......+....  -..+.++.|+.+
T Consensus       132 yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~  194 (254)
T 3kjh_A          132 KEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR  194 (254)
T ss_dssp             CSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred             CCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence            45789999875433  4455668899999999874 455666666555444432  245788899998

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=89.13  E-value=0.016  Score=45.10  Aligned_cols=94  Identities=14%  Similarity=0.123  Sum_probs=51.2

Q ss_pred             EEEEeCCCchhhhh--------hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132           11 LQIWDTAGQESFRS--------ITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus        11 ~~l~Dt~G~~~~~~--------~~~~~~--~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.++||||......        ....++  +..+.+++++++.....+..+..    +......+.|+++++||.|....
T Consensus       214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHR  289 (369)
T ss_dssp             CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred             eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccc
Confidence            57999999743221        122222  67899999999843211111100    11112246899999999997543


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQN  109 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~  109 (165)
                      ... ......+.+..+......++...++
T Consensus       290 ~~~-~~~~~~~~~~~g~~l~p~~~~~~~~  317 (369)
T 3ec1_A          290 TKL-EKADSLYANQLGELLSPPSKRYAAE  317 (369)
T ss_dssp             EEG-GGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred             ccH-HHHHHHHHHhcCCccCCCCchhhhh
Confidence            322 2223334455666655555544333

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=88.14  E-value=1.4  Score=31.53  Aligned_cols=66  Identities=8%  Similarity=-0.007  Sum_probs=44.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC------CCCeEEEEeeCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN------ANMTIMLIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~------~~~p~ivv~nK~Dl   77 (165)
                      +-+.++|+++...  ......+..+|.+|++++++ ..+...+...+..+.....      ....+.+|+|+.+-
T Consensus       114 yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          114 FEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             CCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            4578999987543  34555677899999999874 4556666665555543321      12467889999984

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=86.11  E-value=7.6  Score=27.85  Aligned_cols=87  Identities=16%  Similarity=0.126  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCchhhhhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeE-EEEeeCCCCCCCCCCCH
Q 031132            9 IKLQIWDTAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTI-MLIGNKCDLAHRRAVST   85 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~-~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~-ivv~nK~Dl~~~~~~~~   85 (165)
                      +-+.++|++|......+. ......+|.+|+++.++ ..+...+...+..+..... .+.++ .+|.|+.+-.    ...
T Consensus       116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~  190 (269)
T 1cp2_A          116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred             CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence            557899998864322221 22235799999999864 4566666666666655432 24454 6789998631    234


Q ss_pred             HHHHHHHHHcCCeEE
Q 031132           86 EEGEQFAKEHGLIFM  100 (165)
Q Consensus        86 ~~~~~~~~~~~~~~~  100 (165)
                      .....+...++.+++
T Consensus       191 ~~~~~l~~~~~~~v~  205 (269)
T 1cp2_A          191 ELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCccc
Confidence            444555566676644

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=85.81  E-value=3.6  Score=30.18  Aligned_cols=66  Identities=14%  Similarity=0.181  Sum_probs=40.1

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHhcCCCCeE-EEEeeCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA---RQHANANMTI-MLIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i---~~~~~~~~p~-ivv~nK~Dl   77 (165)
                      +-+.++|+++......  ...+..+|.+|+++.++. .+...+...+..+   ....+.+.++ -+|.|+.|.
T Consensus       155 yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~  224 (298)
T 2oze_A          155 YDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT  224 (298)
T ss_dssp             CSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred             CCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence            4578999987654322  223446999999998753 3344444444333   3333345664 488999985

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=85.73  E-value=5.9  Score=31.27  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=45.1

Q ss_pred             EEEEEEeCCCchhhh-hhhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031132            9 IKLQIWDTAGQESFR-SITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR   81 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~-~~~~-----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~   81 (165)
                      +.+.++||+|..... .+..     ..+..++.+++|+|+......   ......+...    .+ .-+|+||.|.....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCccH
Confidence            457899999975432 1211     124478999999998754322   2222223222    33 34688999974322


Q ss_pred             CCCHHHHHHHHHHcCCeEEE
Q 031132           82 AVSTEEGEQFAKEHGLIFME  101 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~  101 (165)
                        .  ....+....+.|+.+
T Consensus       257 --g--~~l~i~~~~~~Pi~~  272 (433)
T 2xxa_A          257 --G--AALSIRHITGKPIKF  272 (433)
T ss_dssp             --T--HHHHHHHHHCCCEEE
T ss_pred             --H--HHHHHHHHHCCCeEE
Confidence              1  233445555666433

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=84.89  E-value=0.018  Score=44.82  Aligned_cols=89  Identities=11%  Similarity=0.106  Sum_probs=47.6

Q ss_pred             EEEEeCCCchhhhh--------hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132           11 LQIWDTAGQESFRS--------ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus        11 ~~l~Dt~G~~~~~~--------~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.++||||......        ....+  .+..+.++|++++.....+..+..    +......+.|+++++||.|....
T Consensus       213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred             eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccc
Confidence            67999999743221        11111  356789999998843211111100    11111246899999999997543


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecC
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASA  104 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa  104 (165)
                      ... ......+.+..+..++..++
T Consensus       289 ~~~-~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          289 TKL-EKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             EEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred             ccH-HHHHHHHHHHhCCccCCCch
Confidence            322 22333344555655444443

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=82.32  E-value=12  Score=27.19  Aligned_cols=87  Identities=14%  Similarity=0.051  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCe-EEEEeeCCCCCCCCCCCH
Q 031132            9 IKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMT-IMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~-~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~Dl~~~~~~~~   85 (165)
                      +-+.++|++|......+ .......+|.+|+++.++ ..+...+...+..+..... .+.+ .-+|.|+.+..    ...
T Consensus       119 yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~  193 (289)
T 2afh_E          119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THH
T ss_pred             CCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHH
Confidence            55789999875432222 122235799999999864 4556666555555554322 2455 45788998631    122


Q ss_pred             HHHHHHHHHcCCeEE
Q 031132           86 EEGEQFAKEHGLIFM  100 (165)
Q Consensus        86 ~~~~~~~~~~~~~~~  100 (165)
                      .....+...++.+++
T Consensus       194 ~~~~~l~~~~g~~~l  208 (289)
T 2afh_E          194 ELIIALANKLGTQMI  208 (289)
T ss_dssp             HHHHHHHHHHTSCEE
T ss_pred             HHHHHHHHHcCcccc
Confidence            334445555666644

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=80.79  E-value=3  Score=31.64  Aligned_cols=90  Identities=12%  Similarity=0.056  Sum_probs=51.3

Q ss_pred             EEEEeCCCchhhhh-hhHh-----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC
Q 031132           11 LQIWDTAGQESFRS-ITRS-----YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus        11 ~~l~Dt~G~~~~~~-~~~~-----~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +.+.||+|...... +...     ..-..|-.++++|+....   ++......+....   ....++.||.|-...    
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a~----  283 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADAR----  283 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCSC----
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCccc----
Confidence            45799999743221 1111     112478899999977653   3333333343331   234677899995321    


Q ss_pred             HHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132           85 TEEGEQFAKEHGLIFMEASAKTAQNVEE  112 (165)
Q Consensus        85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~  112 (165)
                      .-.........+.|+.+++  +|+++++
T Consensus       284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            2234455667789988876  5666544

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=80.49  E-value=4  Score=29.90  Aligned_cols=64  Identities=9%  Similarity=0.087  Sum_probs=40.3

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCC
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDL   77 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl   77 (165)
                      +-+.++|+++..... ........+|.+|+|+.... .+...+...+..+...   +.+++ +|+|+.|.
T Consensus       192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~  256 (271)
T 3bfv_A          192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPK  256 (271)
T ss_dssp             CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC
T ss_pred             CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcC
Confidence            347889998764321 12334457899999998754 3345555555554433   45655 88999985

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=80.05  E-value=9  Score=30.22  Aligned_cols=85  Identities=20%  Similarity=0.110  Sum_probs=47.1

Q ss_pred             EEEEEEeCCCchhhhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRS-ITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +-+.+.||+|...... +..     ...-.+|.+++|+|+....   ++......+...  .+ ..-+|.||.|-.... 
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~--l~-i~GVIlTKlD~~~~~-  253 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK--VG-VTGLVLTKLDGDARG-  253 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--TC-CCEEEEESGGGCSSC-
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc--CC-ceEEEEeCcCCcccH-
Confidence            3478999999753211 111     1122589999999986432   222222333322  12 356688999963221 


Q ss_pred             CCHHHHHHHHHHcCCeEEEec
Q 031132           83 VSTEEGEQFAKEHGLIFMEAS  103 (165)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~vS  103 (165)
                         ..........+.|+.++.
T Consensus       254 ---g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          254 ---GAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             ---HHHHHHHHHHCCCEEEEE
T ss_pred             ---HHHHHHHHHHCCCEEEEe
Confidence               233445566788876664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-39
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-37
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-37
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-35
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-34
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-34
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-33
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-33
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-33
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-31
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-31
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-30
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-28
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-25
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-25
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-23
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-22
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-21
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-21
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	8e-21
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-20
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-20
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-20
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-20
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-20
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-20
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-19
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	4e-19
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-19
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-18
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-18
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-18
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-17
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-17
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-17
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-17
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-16
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-16
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	6e-16
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	8e-16
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-15
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-14
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-14
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-12
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	6e-12
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-11
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-11
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-11
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	7e-11
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-10
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-08
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-08
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-07
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-07

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (327), Expect = 1e-39
 Identities = 64/124 (51%), Positives = 89/124 (71%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +H
Sbjct: 48  IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 107

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A  I
Sbjct: 108 ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

Query: 122 YKKI 125
             K+
Sbjct: 168 KAKM 171

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 3e-37
 Identities = 58/123 (47%), Positives = 86/123 (69%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           ++ +D   +KLQ+WDTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  +
Sbjct: 48  VLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE 107

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A  ++ +ML+GNK D AH R V  E+GE+ AKE+GL FME SAKT  NV+ AF   A  
Sbjct: 108 YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 167

Query: 121 IYK 123
           + +
Sbjct: 168 LKR 170

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  122 bits (308), Expect = 6e-37
 Identities = 61/125 (48%), Positives = 82/125 (65%), Gaps = 1/125 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I+ K +KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +
Sbjct: 43  TVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE 102

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HAN    ++L+GNK D+   R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  
Sbjct: 103 HANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 161

Query: 121 IYKKI 125
           I +KI
Sbjct: 162 IQEKI 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 3e-35
 Identities = 105/130 (80%), Positives = 112/130 (86%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           M+ ID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQ
Sbjct: 44  MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 103

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H+++NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  
Sbjct: 104 HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 163

Query: 121 IYKKIQDGVF 130
           IY+KIQ G+F
Sbjct: 164 IYRKIQQGLF 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 1e-34
 Identities = 79/122 (64%), Positives = 99/122 (81%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR 
Sbjct: 45  IIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 104

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
             N N  I+LIGNK DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  
Sbjct: 105 LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 164

Query: 121 IY 122
           IY
Sbjct: 165 IY 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 6e-34
 Identities = 76/128 (59%), Positives = 95/128 (74%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR 
Sbjct: 46  IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 105

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  
Sbjct: 106 LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK 165

Query: 121 IYKKIQDG 128
           I  KI+ G
Sbjct: 166 ILNKIESG 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 2e-33
 Identities = 66/126 (52%), Positives = 87/126 (69%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K IK QIWDTAGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R 
Sbjct: 45  SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 104

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           HA++N+ IML+GNK DL H RAV T+E   FA+++ L F+E SA  + NVEEAF      
Sbjct: 105 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 164

Query: 121 IYKKIQ 126
           IY+ + 
Sbjct: 165 IYRIVS 170

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (283), Expect = 4e-33
 Identities = 58/124 (46%), Positives = 79/124 (63%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I  ++K IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + 
Sbjct: 46  TIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 105

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           ++  N  ++L+GNKCD+   R VS+E G Q A   G  F EASAK   NV++ F +    
Sbjct: 106 YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 165

Query: 121 IYKK 124
           I +K
Sbjct: 166 ICEK 169

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 5e-33
 Identities = 53/123 (43%), Positives = 75/123 (60%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I++D    KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   
Sbjct: 48  TISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET 107

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +   N  + ++         R V   EG +FA++H ++F+EASAKT   V+ AF +    
Sbjct: 108 YCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK 167

Query: 121 IYK 123
           I +
Sbjct: 168 IIQ 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (274), Expect = 2e-31
 Identities = 55/135 (40%), Positives = 89/135 (65%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  +
Sbjct: 47  TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           +A + +  +L+GNKCDL  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  
Sbjct: 107 YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 166

Query: 121 IYKKIQDGVFDVSNE 135
           I + +     + + +
Sbjct: 167 IKESMSQQNLNETTQ 181

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 3e-31
 Identities = 56/123 (45%), Positives = 81/123 (65%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
           + I+ + +KLQIWDTAGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+
Sbjct: 47  VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 106

Query: 62  ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 121
           A+  +  +L+GNK DLA RR VS +  E+F++   + ++E SAK + NVE+ F+  A  +
Sbjct: 107 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

Query: 122 YKK 124
             +
Sbjct: 167 ISE 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 1e-30
 Identities = 46/126 (36%), Positives = 78/126 (61%), Gaps = 1/126 (0%)

Query: 2   ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH 61
            +     + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +
Sbjct: 57  SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 116

Query: 62  ANANMT-IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           A      I+LIGNK DL  +R V+  +  + A ++G+ + E SA T QNVE+A       
Sbjct: 117 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 176

Query: 121 IYKKIQ 126
           I K+++
Sbjct: 177 IMKRME 182

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-28
 Identities = 56/121 (46%), Positives = 83/121 (68%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + ++++ I+LQ+WDTAGQE FRS+  SY R +A A++VYDIT   +F     W++D R 
Sbjct: 41  TMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT 100

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
              +++ IML+GNK DLA +R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA 
Sbjct: 101 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 160

Query: 121 I 121
           +
Sbjct: 161 L 161

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (231), Expect = 2e-25
 Identities = 54/123 (43%), Positives = 83/123 (67%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++
Sbjct: 47  TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
            A+ N+ I L GNK DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  
Sbjct: 107 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

Query: 121 IYK 123
           + K
Sbjct: 167 LPK 169

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 5e-25
 Identities = 44/123 (35%), Positives = 70/123 (56%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I  K + L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+
Sbjct: 44  KLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 103

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
                + + ++GNK DL   R VS +E E +A+  G      SAK  + +EE F+     
Sbjct: 104 MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR 163

Query: 121 IYK 123
           + +
Sbjct: 164 MIE 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 87.3 bits (215), Expect = 5e-23
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-AR 59
            + +D + +++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R
Sbjct: 44  KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR 103

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
              + N+  +L+GNK DL  +R VS EE +  A +  + ++E SAKT  NV++ F     
Sbjct: 104 VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

Query: 120 TIYKK 124
            I  +
Sbjct: 164 EIRAR 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 3e-22
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDAR 59
            I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F +      +  R
Sbjct: 43  EIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIR 102

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
                 + ++L+GNK DL   R VS+ EG   A+E G  FME SAK+   V+E F +   
Sbjct: 103 VKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

Query: 120 TIY 122
            + 
Sbjct: 163 QMN 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.5 bits (205), Expect = 1e-21
 Identities = 51/121 (42%), Positives = 74/121 (61%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            +   N+  K  IWDTAG E FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQ
Sbjct: 45  TVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ 104

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
           H   ++ + + GNKCDL   R V   + + +A     IF+E SAK A N+ E FI+ +  
Sbjct: 105 HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR 164

Query: 121 I 121
           I
Sbjct: 165 I 165

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 6e-21
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 4/125 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           + T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+  +     L     
Sbjct: 48  VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN 107

Query: 61  H-ANANMTIMLIGNKCDLAHRR---AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
                +  I++  NK DL        +  + G    ++       + A +   + E    
Sbjct: 108 DREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 167

Query: 117 TAATI 121
             +  
Sbjct: 168 LTSNY 172

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 8e-21
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D KP+ L +WDTAGQE +  +    Y     +L+ + +    +F ++ +      +
Sbjct: 45  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTE------------EGEQFAKEHGLI-FMEASAKTA 107
           H   N  I+L+G K DL   +    +            +G   AKE G + ++E SA T 
Sbjct: 105 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 164

Query: 108 QNVEEAFIKTAATI 121
           + ++  F +    +
Sbjct: 165 RGLKTVFDEAIRAV 178

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.2 bits (199), Expect = 1e-20
 Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 5/123 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR 59
            + ID + IK+Q+WDTAGQE F +S+ + YYR     + VYD+T   +F+ L +W+E+ +
Sbjct: 43  AVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 102

Query: 60  QHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ---NVEEAFI 115
           QH  AN +  +L+GNKCDL     V T+  ++FA  H +   E SAK      +VE  F+
Sbjct: 103 QHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFM 162

Query: 116 KTA 118
             A
Sbjct: 163 TLA 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 1e-20
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 13/139 (9%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + I  +P  L ++DTAGQE +  +    Y      L+ + +    +F ++         
Sbjct: 43  TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 102

Query: 61  HANANMTIMLIGNKCDLAHRRAV------------STEEGEQFAKE-HGLIFMEASAKTA 107
           H       +L+G + DL    +             + E  E+ A++   + ++E SA T 
Sbjct: 103 HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162

Query: 108 QNVEEAFIKTAATIYKKIQ 126
           + ++  F +      +  +
Sbjct: 163 KGLKNVFDEAILAALEPPE 181

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 1e-20
 Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 3/116 (2%)

Query: 12  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 71
           +IWDTAGQE F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I L+
Sbjct: 55  EIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV 114

Query: 72  GNKCDLAH---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 124
           GNK D+      R V+ EEGE+ A+E GL+F E SAKT +NV + F+     I  K
Sbjct: 115 GNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 81.2 bits (199), Expect = 2e-20
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           + T+  K +KL +WD  GQ S R   R YY   A  + V D T ++  +  +  L    Q
Sbjct: 53  VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ 112

Query: 61  H-ANANMTIMLIGNKCDLAHR---RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
                +  +++  NK D         VS E      K+     + +SA   + + E    
Sbjct: 113 EEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDW 172

Query: 117 TAATIYKK 124
               I ++
Sbjct: 173 LIDVIKEE 180

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 2e-20
 Identities = 42/126 (33%), Positives = 75/126 (59%), Gaps = 6/126 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D   + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L++W ++   
Sbjct: 47  DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 106

Query: 61  HANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 115
           +A+     +   +++GNK D++ R+ VSTEE + + +++G   + E SAK A NV  AF 
Sbjct: 107 YADVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 165

Query: 116 KTAATI 121
           +    +
Sbjct: 166 EAVRRV 171

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 4e-20
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 2/124 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++
Sbjct: 43  QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKR 102

Query: 61  HANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
             ++ ++ ++L+GNKCD    R V + + +  A+ +G+ ++E SAKT Q VE+AF     
Sbjct: 103 VKDSDDVPMVLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161

Query: 120 TIYK 123
            I +
Sbjct: 162 EIRQ 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 1e-19
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 2/125 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-AR 59
            + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R
Sbjct: 43  QVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR 102

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTA 118
                ++ ++L+GNKCDL   R V  E+G+  A++     F+E+SAK+  NV E F    
Sbjct: 103 VKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

Query: 119 ATIYK 123
             I +
Sbjct: 163 RQINR 167

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 4e-19
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            +T+  K   L ++DTAGQE +  +    Y      L+ + +    +F ++        +
Sbjct: 49  SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK 108

Query: 61  HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHG-LIFMEASAKTA 107
               N+  +LIG + DL               + +  E+G++ AKE G   ++E SA T 
Sbjct: 109 EYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 168

Query: 108 QNVEEAFIKTAATI 121
           + ++  F +    I
Sbjct: 169 KGLKTVFDEAIIAI 182

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 7e-19
 Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 2/128 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
              ID++  +L I DTAGQE F ++   Y R   G LLV+ +T R +F  +  +     +
Sbjct: 45  QCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILR 104

Query: 61  HANANMTI-MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
             + +    +LIGNK DL H+R V+ EEG+Q A++  + +MEASAK   NV++AF     
Sbjct: 105 VKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF-HELV 163

Query: 120 TIYKKIQD 127
            + +K Q+
Sbjct: 164 RVIRKFQE 171

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 1e-18
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDAR 59
           + T++ K I   +WD  GQ+  R + R Y++   G + V D   RE  N      +    
Sbjct: 36  VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 95

Query: 60  QHANANMTIMLIGNKC---DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
           +    +  +++  NK    +  +   ++ + G    +          A +   + E    
Sbjct: 96  EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155

Query: 117 TAATI 121
            +  +
Sbjct: 156 LSNQL 160

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-18
 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-EDAR 59
           + ++D  P +L I DTAGQE F ++   Y R   G LLV+ I  R++FN +     +  R
Sbjct: 46  ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR 105

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
                +  ++L+GNK DL  +R V   E   F   H + + EASAK   NV+EAF +   
Sbjct: 106 VKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 165

Query: 120 TIYKKIQ 126
            + K  +
Sbjct: 166 AVRKYQE 172

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.7 bits (182), Expect = 4e-18
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-AR 59
              IDN+   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R
Sbjct: 44  HTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 103

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTA 118
                +  ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK    NV++ F    
Sbjct: 104 VKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 163

Query: 119 ATIYKK 124
             I ++
Sbjct: 164 RVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.8 bits (177), Expect = 3e-17
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
              ID + I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q
Sbjct: 42  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 101

Query: 61  HANANMTIMLIGNKCDL------------AHRRAVSTEEGEQFAKEHG-LIFMEASAKTA 107
               N  ++L+G K DL              +  VS ++G   AK+ G   ++E SA  +
Sbjct: 102 EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 161

Query: 108 QN-VEEAFIKTAATIYKK 124
           +N V + F         K
Sbjct: 162 ENSVRDIFHVATLACVNK 179

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 3e-17
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I +D K ++L +WDTAG E +  +    Y      L+ + I   ++  ++        +
Sbjct: 42  DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 101

Query: 61  HANANMTIMLIGNKCDLAHRRAV------------STEEGEQFAKEHGLI-FMEASAKTA 107
           H   N+ I+L+GNK DL +                  EEG   A   G   +ME SAKT 
Sbjct: 102 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 161

Query: 108 QNVEEAFIKTAATIYK 123
             V E F        +
Sbjct: 162 DGVREVFEMATRAALQ 177

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 4e-17
 Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 3/126 (2%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDAR 59
             TID++ + ++I DT   +        + R   G +LVYDIT R +F   L        
Sbjct: 42  QATIDDEVVSMEILDT-AGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE 100

Query: 60  QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTA 118
                N+T++L+GNK DL H R VSTEEGE+ A E    F E SA T + N+ E F +  
Sbjct: 101 IKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 160

Query: 119 ATIYKK 124
             + ++
Sbjct: 161 REVRRR 166

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 5e-17
 Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            I ++++ ++L +WDTAGQE F +IT++YYRGA   +LV+  T RE+F  ++SW E    
Sbjct: 43  QIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA 102

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
               ++   L+ NK DL     +  EE E  AK   L F   S K   NV E F   A  
Sbjct: 103 EVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 161

Query: 121 IYK 123
             +
Sbjct: 162 HLQ 164

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (171), Expect = 2e-16
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 6/132 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +    +K   +Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   
Sbjct: 44  VTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 103

Query: 61  HANAN----MTIMLIGNKCDLAHRRAVSTEEGEQF-AKEHGLI-FMEASAKTAQNVEEAF 114
           HAN N       +++GNK D    + + +E+  Q  AK  G I     SAK A NV+ AF
Sbjct: 104 HANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 163

Query: 115 IKTAATIYKKIQ 126
            + A +  ++ Q
Sbjct: 164 EEIARSALQQNQ 175

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 2e-16
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 4/125 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +  I     +  +WD  GQES RS   +YY      ++V D T RE  +     L     
Sbjct: 51  VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 110

Query: 61  HANANM-TIMLIGNKCDLAHR---RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
           H +     +++  NK D+        +S        K+H        A T + + +    
Sbjct: 111 HEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 170

Query: 117 TAATI 121
             + +
Sbjct: 171 MMSRL 175

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (167), Expect = 6e-16
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 2/126 (1%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +I+ D     LQI DT G   F ++ R         +LVY IT R++   L    E   +
Sbjct: 42  VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE 101

Query: 61  HAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 118
                 ++ IML+GNKCD +  R V + E E  A+     FME SAK   NV+E F +  
Sbjct: 102 IKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

Query: 119 ATIYKK 124
               ++
Sbjct: 162 NLEKRR 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.0 bits (167), Expect = 8e-16
 Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 6/139 (4%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D++ + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++   
Sbjct: 43  EVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI 102

Query: 61  HANA----NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
            A+     N   +++GNK DL +R+  +         ++ + + E SAK A NVE+AF  
Sbjct: 103 QASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 162

Query: 117 TAATIYKKIQDGVFDVSNE 135
            A    K  Q+   ++ NE
Sbjct: 163 IARNALK--QETEVELYNE 179

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 66.9 bits (162), Expect = 4e-15
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           + ++ ++  KL +WD  GQ   R   RSY+      + V D   R+ F      L +  +
Sbjct: 52  IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLE 111

Query: 61  HAN-ANMTIMLIGNKCDLAHRR---AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
               + + +++  NK DL        ++        ++        SA T + V++    
Sbjct: 112 EEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNW 171

Query: 117 TAATI 121
               +
Sbjct: 172 VCKNV 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 3e-14
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 1/124 (0%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +IT++ +   LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +         
Sbjct: 44  LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 103

Query: 61  HANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 119
                 + IML+GNK DL   R +S EEG+  A+     F+E+SAK  Q   + F +   
Sbjct: 104 MVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIIL 163

Query: 120 TIYK 123
              K
Sbjct: 164 EAEK 167

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 63.9 bits (154), Expect = 4e-14
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW-LEDAR 59
           + T++++  KL IWD  GQ+S RS  R+Y+    G + V D   R+              
Sbjct: 38  IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLV 97

Query: 60  QHANANMTIMLIGNKCDLAHRRAVST---EEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
           +   A  T+++  NK DL    + +           + H       SA T +++      
Sbjct: 98  EERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDW 157

Query: 117 TAATIYKK 124
               I  +
Sbjct: 158 LLDDISSR 165

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 6e-12
 Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           +   +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +
Sbjct: 44  VFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 103

Query: 61  HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT 120
               N+ I+L GNK D+  R+     +   F ++  L + + SAK+  N E+ F+  A  
Sbjct: 104 VCE-NIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 160

Query: 121 IYKK 124
           +   
Sbjct: 161 LIGD 164

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 6e-12
 Identities = 22/77 (28%), Positives = 32/77 (41%)

Query: 48  FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 107
                  ++  R     ++ I+L+GNK DL   R VS  EG   A      F+E SA   
Sbjct: 94  EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 153

Query: 108 QNVEEAFIKTAATIYKK 124
            NV+E F      +  +
Sbjct: 154 HNVKELFEGIVRQVRLR 170

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-11
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 4/128 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT-RRETFNHLASWLEDAR 59
           + T+  K +K Q+WD  G  S R   R YY      + V D   R       +  +    
Sbjct: 41  VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE 100

Query: 60  QHANANMTIMLIGNKCDLAHRRAVS---TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 116
           +       +++  NK D+      S      G    K+      + SA     ++EA   
Sbjct: 101 EEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 160

Query: 117 TAATIYKK 124
              T+  +
Sbjct: 161 LVETLKSR 168

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 1e-11
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
            + +D +   + I + AG     +    +         + D    +  + L   L   R 
Sbjct: 44  EMLVDGQTHLVLIREEAGA--PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRG 101

Query: 61  HANANMTIMLIGNKCD--LAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKT 117
                + + L+G +     +  R V          +     + E  A    NV+  F + 
Sbjct: 102 EGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 161

Query: 118 AATIYKKIQD 127
           A  +    + 
Sbjct: 162 AQKVVTLRKQ 171

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-11
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 4/118 (3%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
           M  I    + +++WD  GQ  FRS+   Y RG +  + + D   +E      + L +   
Sbjct: 39  MRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD 98

Query: 61  HAN-ANMTIMLIGNKCDLA---HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 114
                 + ++++GNK DL      + +  +      ++  +     S K   N++   
Sbjct: 99  KPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 156

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 7e-11
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 12  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML- 70
            ++D   Q+  R +           ++VY +T + +F   +      R+    +   ++ 
Sbjct: 51  MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 110

Query: 71  IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 126
           +GNK DL   R VS +EG   A      F+E SA    NV+  F      I  +  
Sbjct: 111 VGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 166

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.5 bits (127), Expect = 3e-10
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60
              +    IK   +D  G    R + + Y+    G + + D    E F+     L+    
Sbjct: 36  SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 95

Query: 61  HA-NANMTIMLIGNKCDLAHRRAVS----------TEEGEQFAKEHGLIFMEASAKTAQN 109
            A   ++  +++GNK D  +  + +          T   ++   +  +     S      
Sbjct: 96  IAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 155

Query: 110 VEEAF 114
             EAF
Sbjct: 156 YLEAF 160

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 13/135 (9%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-- 58
               + K +  ++ D  GQ S R      +      L +   +  +              
Sbjct: 36  EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTE 95

Query: 59  ---------RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 109
                         +N++I+L  NK DL   +       + F +  G        +  + 
Sbjct: 96  SLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ--KF 153

Query: 110 VEEAFIKTAATIYKK 124
           + E F        ++
Sbjct: 154 LVECFRGKRRDQQQR 168

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 16/137 (11%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-EDAR 59
              +    +    +D  G    R + ++Y     G + + D    E        L     
Sbjct: 49  SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 108

Query: 60  QHANANMTIMLIGNKCDLAHRRAVS---------------TEEGEQFAKEHGLIFMEASA 104
               AN+ I+++GNK D     +                      +      L     S 
Sbjct: 109 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 168

Query: 105 KTAQNVEEAFIKTAATI 121
              Q   E F   A  I
Sbjct: 169 LKRQGYGEGFRWMAQYI 185

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 37/161 (22%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT-----------RRETFN 49
               D + +  ++ D  GQ S R      +      + +  ++                 
Sbjct: 37  EYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEE 96

Query: 50  HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG------------- 96
             A +          N +++L  NK DL   + + +   + F +  G             
Sbjct: 97  SKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL 156

Query: 97  -------------LIFMEASAKTAQNVEEAFIKTAATIYKK 124
                        +      A   +N+   F     TI + 
Sbjct: 157 KMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 21/161 (13%), Positives = 40/161 (24%), Gaps = 37/161 (22%)

Query: 1   MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS------- 53
                 K +  +++D  GQ S R      + G    +    ++  +              
Sbjct: 34  ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 93

Query: 54  ----WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA------- 102
               +          + +I+L  NK DL   +   +     + +  G    E        
Sbjct: 94  SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 153

Query: 103 -------------------SAKTAQNVEEAFIKTAATIYKK 124
                               A   +NV+  F      I K 
Sbjct: 154 QFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.94
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.94
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.94
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.94
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.93
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.91
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.91
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.91
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.9
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.89
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.88
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.86
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.86
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.85
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.84
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.77
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.71
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.68
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.64
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.59
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.59
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.58
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.56
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.52
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.51
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.51
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.47
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.45
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.44
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.41
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.4
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.38
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.36
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.34
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.29
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.22
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.2
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.19
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.07
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.02
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.0
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.88
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.83
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.83
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.8
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.74
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.7
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.64
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.63
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.44
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.43
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.31
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.29
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.91
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.88
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.7
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.43
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.14
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.48
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.87
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.53
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.52
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.71
d1okkd2	207	GTPase domain of the signal recognition particle r	91.3
d2qy9a2	211	GTPase domain of the signal recognition particle r	91.19
d1vmaa2	213	GTPase domain of the signal recognition particle r	90.4
d1j8yf2	211	GTPase domain of the signal sequence recognition p	87.05
d1ls1a2	207	GTPase domain of the signal sequence recognition p	86.98
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	84.89
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	82.78
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	81.34

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=171.55  Aligned_cols=126  Identities=25%  Similarity=0.373  Sum_probs=109.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.++++.+.+.+|||+|+++++.++..+++++|++|+|||++++.+++.+..|+..+..... ..+|+++|+||+|+...
T Consensus        41 i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~  120 (168)
T d2gjsa1          41 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS  120 (168)
T ss_dssp             EEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGG
T ss_pred             eeccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhh
Confidence            56899999999999999999999999999999999999999999999999999999877654 56899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      ++++..+++.++..+++++++|||++|.|++++|+.|++.+..++++
T Consensus       121 ~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~~~  167 (168)
T d2gjsa1         121 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS  167 (168)
T ss_dssp             CCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhC
Confidence            78899999999999999999999999999999999999999887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.6e-27  Score=163.06  Aligned_cols=124  Identities=35%  Similarity=0.589  Sum_probs=115.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+||++|++++..++..+++++|++|+|||+++..+++.+..|+..+.+... .+.|++||+||+|+...
T Consensus        47 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~  126 (173)
T d2fn4a1          47 CSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ  126 (173)
T ss_dssp             EEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred             eccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhc
Confidence            67899999999999999999999999999999999999999999999999999998876553 67899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      +....+++..++..+++++++|||++|.|++++|+.|++.+.+++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         127 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             cccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            778889999999999999999999999999999999999987754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-26  Score=161.25  Aligned_cols=123  Identities=46%  Similarity=0.789  Sum_probs=114.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|+++|..+++.+++++|++++|||.++..++..+..|+..+........|++||+||+|+.+..
T Consensus        47 ~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~  126 (171)
T d2ew1a1          47 VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR  126 (171)
T ss_dssp             EEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccccc
Confidence            56789999999999999999999999999999999999999999999999999998877655678999999999998777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      .+..++++.++...++++++|||++|+||+++|.+|.++++..
T Consensus       127 ~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         127 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             SSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            8888999999999999999999999999999999999888764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.3e-26  Score=160.51  Aligned_cols=122  Identities=47%  Similarity=0.800  Sum_probs=112.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +..++..+.+++|||+|++++..+++.+++++|++|+|||++++.++..+..|+..+........|+++++||+|+.+..
T Consensus        47 ~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  126 (169)
T d3raba_          47 IYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER  126 (169)
T ss_dssp             EEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGC
T ss_pred             EEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccccc
Confidence            45678889999999999999999999999999999999999999999999999988776655678999999999998777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .++.+++..+++.+++++++|||++|.|++++|++|++.|++
T Consensus       127 ~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             ccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            888899999999999999999999999999999999998875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.2e-26  Score=160.64  Aligned_cols=123  Identities=31%  Similarity=0.552  Sum_probs=114.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+++||++|++.+..+++.+++++|++++|||++++.||+.+..|+..+.+... .+.|+++++||+|+...
T Consensus        45 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~  124 (169)
T d1x1ra1          45 TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL  124 (169)
T ss_dssp             EEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred             cccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhh
Confidence            56889999999999999999999999999999999999999999999999999999877654 67899999999999888


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKK  124 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~l~~~l~~~i~~~  124 (165)
                      +.++.+++..++..++++|+++||+++. ||+++|+.|++.|.++
T Consensus       125 ~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ  169 (169)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred             ceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence            8889999999999999999999999886 9999999999988763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.94  E-value=2.2e-26  Score=160.54  Aligned_cols=122  Identities=34%  Similarity=0.580  Sum_probs=110.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+||++|++++..+++.+++++|++++|||+++..+++.+..|+..+.+... .+.|+++|+||+|+...
T Consensus        45 ~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~  124 (168)
T d1u8za_          45 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             EEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred             cccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEecccccccc
Confidence            56899999999999999999999999999999999999999999999999999999877654 67899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +.++.++++.++..+++++++|||++|.|++++|++|++.+..
T Consensus       125 ~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            7889999999999999999999999999999999999988754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-26  Score=158.29  Aligned_cols=127  Identities=60%  Similarity=0.920  Sum_probs=117.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +..++..+.+.+|||+|++++..+++.+++++|++|+|||.+++.++..+..|+..+......++|+++++||+|+....
T Consensus        47 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  126 (174)
T d2bmea1          47 INVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR  126 (174)
T ss_dssp             EEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchh
Confidence            45688999999999999999999999999999999999999999999999999999887766789999999999997777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .........++...+++++++||++|+|++++|+++++.++++..++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~~  173 (174)
T d2bmea1         127 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG  173 (174)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             chhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence            78888888999999999999999999999999999999999887765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-26  Score=159.74  Aligned_cols=122  Identities=31%  Similarity=0.475  Sum_probs=113.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+||++|.+.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...
T Consensus        45 ~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~  124 (167)
T d1xtqa1          45 ITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME  124 (167)
T ss_dssp             EEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGG
T ss_pred             EecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccc
Confidence            57899999999999999999999999999999999999999999999999999998877654 67899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +.++.++++.++..++++|++|||++|.|++++|+.|+..+.+
T Consensus       125 r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~K  167 (167)
T d1xtqa1         125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK  167 (167)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            7889999999999999999999999999999999999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-25  Score=156.75  Aligned_cols=129  Identities=51%  Similarity=0.866  Sum_probs=118.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|+++|..++..+++.+|++|+|||.+++.|+..+..|+..+......++|+++|+||+|+.+..
T Consensus        46 ~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~  125 (175)
T d2f9la1          46 IQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR  125 (175)
T ss_dssp             EEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccc
Confidence            57899999999999999999999999999999999999999999999999999999988776779999999999998776


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF  130 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~  130 (165)
                      .........+....+.++++|||++|+|++++|+++++.+.+....+++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~~~qi  174 (175)
T d2f9la1         126 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI  174 (175)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSCC
T ss_pred             cchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhhhccC
Confidence            7777778888888999999999999999999999999999887766553

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4e-26  Score=158.43  Aligned_cols=120  Identities=38%  Similarity=0.643  Sum_probs=112.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +..++..+.+.+|||+|++++..+++.+++++|++++|||+++..+++.+..|+..+.... .++|+++|+||+|+.+.+
T Consensus        44 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~  122 (164)
T d1z2aa1          44 IQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS  122 (164)
T ss_dssp             EEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGC
T ss_pred             eeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC-CCceEEEeeccCCcccce
Confidence            4678889999999999999999999999999999999999999999999999999987766 579999999999998778


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .+..++++.+++.++++++++||++|.|++++|+.|++.++
T Consensus       123 ~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             SSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             eeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999999876

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-25  Score=155.74  Aligned_cols=120  Identities=65%  Similarity=1.046  Sum_probs=112.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|++++..++..+++++|++++|||+++..++..+..|+..+........|+++++||+|+....
T Consensus        46 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  125 (166)
T d1z0fa1          46 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR  125 (166)
T ss_dssp             EEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhc
Confidence            46889999999999999999999999999999999999999999999999999998887766789999999999997777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ....+++..++...++++++|||++|.|++++|+.|++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         126 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            7888899999999999999999999999999999999876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-26  Score=159.43  Aligned_cols=122  Identities=36%  Similarity=0.698  Sum_probs=106.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|++++..+++.+++++|++|+|||++++.||+.+..|+..+........|++|++||+|+...+
T Consensus        45 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~  124 (167)
T d1z08a1          45 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER  124 (167)
T ss_dssp             EESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC
T ss_pred             eccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeecccccccccc
Confidence            45678889999999999999999999999999999999999999999999999988876655678999999999998888


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .++.++++.++.++++++++|||++|.|++++|.+|++.+++
T Consensus       125 ~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         125 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             CSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999999999998864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.2e-25  Score=157.34  Aligned_cols=125  Identities=51%  Similarity=0.897  Sum_probs=101.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|++.+..+++.+++.+|++|+|||++++.+++.+..|+..+......+.|+++++||.|+....
T Consensus        48 ~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~  127 (173)
T d2fu5c1          48 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR  127 (173)
T ss_dssp             EEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhc
Confidence            67889999999999999999999999999999999999999999999999999999877666789999999999998777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      .....++..++...++++++|||++|+|++++|++|++.|..+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~~  172 (173)
T d2fu5c1         128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD  172 (173)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            777888888899999999999999999999999999999987754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=156.14  Aligned_cols=124  Identities=38%  Similarity=0.617  Sum_probs=110.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+||++|++.+...++.+++.+|++++|||.+++.|++.+..|+..+..... ...|++||+||+|+...
T Consensus        46 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~  125 (171)
T d2erya1          46 CVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQ  125 (171)
T ss_dssp             EEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTS
T ss_pred             eeecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhh
Confidence            56899999999999999999999999999999999999999999999999999988876654 57899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      +.+..+++..++..++++|++|||++|.||+++|..|++.+.+.+
T Consensus       126 ~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~~  170 (171)
T d2erya1         126 RQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ  170 (171)
T ss_dssp             CSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHHhh
Confidence            888999999999999999999999999999999999999886543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-25  Score=154.33  Aligned_cols=127  Identities=81%  Similarity=1.202  Sum_probs=117.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      ...++..+.+.+||++|++.+..+++.+++.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+....
T Consensus        45 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  124 (173)
T d2a5ja1          45 VNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR  124 (173)
T ss_dssp             EEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             eeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhh
Confidence            35678889999999999999999999999999999999999999999999999999887766789999999999997777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      ....++...++...++++++|||++|.|++++|.+|++.+.++..++
T Consensus       125 ~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~~  171 (173)
T d2a5ja1         125 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG  171 (173)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHcc
Confidence            78889999999999999999999999999999999999998776654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.3e-25  Score=158.71  Aligned_cols=128  Identities=43%  Similarity=0.792  Sum_probs=117.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++++..+|..+++++|++|+|||++++.++..+..|+..+.+......|+++++||+|+....
T Consensus        48 i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~  127 (194)
T d2bcgy1          48 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR  127 (194)
T ss_dssp             EEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccccc
Confidence            56789999999999999999999999999999999999999999999999999988877666789999999999998878


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      .+..++...++...+++++++||++|.|++++|+.|++.+.+......
T Consensus       128 ~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~~~~  175 (194)
T d2bcgy1         128 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN  175 (194)
T ss_dssp             CSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHHH
T ss_pred             chhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHhhhcc
Confidence            888889899999999999999999999999999999999887555443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-25  Score=154.31  Aligned_cols=120  Identities=47%  Similarity=0.815  Sum_probs=111.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+||++|++.+...+..++..+|++++|||.++..+++.+..|+..+......+.|+++|+||+|+.+..
T Consensus        42 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  121 (164)
T d1yzqa1          42 MYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR  121 (164)
T ss_dssp             EECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred             eccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhh
Confidence            45678889999999999999999999999999999999999999999999999999887766789999999999998777


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+..+++..++..+++++++|||++|+|++++|.+|.+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         122 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             hhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            8888899999999999999999999999999999998865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.2e-26  Score=159.50  Aligned_cols=122  Identities=39%  Similarity=0.687  Sum_probs=111.1

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS   84 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~   84 (165)
                      +..+.+.+|||+|+++|+.+++.+++++|++|+|||+++..+++.+..|+..+..... ...|++||+||+|+...+.+.
T Consensus        61 ~~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~  140 (186)
T d2f7sa1          61 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN  140 (186)
T ss_dssp             EEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred             cceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcch
Confidence            4567899999999999999999999999999999999999999999999987765543 568899999999998888899


Q ss_pred             HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 031132           85 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  127 (165)
Q Consensus        85 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~  127 (165)
                      .+++..++..++++++++||++|+|++++|++|++.+.++.++
T Consensus       141 ~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         141 ERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             HHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999887654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.3e-25  Score=155.52  Aligned_cols=122  Identities=30%  Similarity=0.526  Sum_probs=107.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH--   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--   79 (165)
                      +.++++.+.+++||++|++.+..+++.+++++|++|+|||++++.||+.+..|+..+......+.|++|++||+|+..  
T Consensus        43 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~  122 (177)
T d1kmqa_          43 IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE  122 (177)
T ss_dssp             EEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCH
T ss_pred             ccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchh
Confidence            468899999999999999999999999999999999999999999999988866655544446899999999999853  


Q ss_pred             ----------CCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           80 ----------RRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        80 ----------~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                                ...++.++++.++..++ ++|++|||++|.|++++|+.+.+.+++
T Consensus       123 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence                      24577888999999888 579999999999999999999998763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.1e-26  Score=158.34  Aligned_cols=120  Identities=34%  Similarity=0.483  Sum_probs=109.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~   79 (165)
                      ..++++.+.+.+||++|++.+...+..+++++|++++|||++++.+++.+..|+..+.....  .++|++||+||+|+..
T Consensus        43 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  122 (171)
T d2erxa1          43 ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  122 (171)
T ss_dssp             EEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             eeeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc
Confidence            46789999999999999999999999999999999999999999999999999988876543  5789999999999987


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+.+..++++.++..+++++++|||++|.|++++|..|++.+
T Consensus       123 ~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999988754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-25  Score=154.15  Aligned_cols=121  Identities=48%  Similarity=0.828  Sum_probs=105.3

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+++|||+|++++..++..+++++|++++|||.+++.++..+..|+..+........|+++++||+|+....
T Consensus        49 ~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~  128 (170)
T d2g6ba1          49 LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER  128 (170)
T ss_dssp             EEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred             EEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcc
Confidence            56889999999999999999999999999999999999999999999999999988877766678999999999998888


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .++.+++..++..++++++++||++|.|++++|++|++.|.
T Consensus       129 ~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         129 VVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            88999999999999999999999999999999999998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-25  Score=153.73  Aligned_cols=123  Identities=38%  Similarity=0.542  Sum_probs=109.5

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +..+++.+.+++||++|++.+. .+..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+...
T Consensus        43 ~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~  121 (168)
T d2atva1          43 ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS  121 (168)
T ss_dssp             EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred             ccccccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhh
Confidence            4578999999999999998774 567789999999999999999999999998776655443 57999999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~l~~~l~~~i~~~~  125 (165)
                      +.++.++++.++.+++++|++|||++|+ ||+++|..|++.+.+++
T Consensus       122 r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         122 RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             CCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999998 59999999999998875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5e-25  Score=155.81  Aligned_cols=121  Identities=25%  Similarity=0.431  Sum_probs=106.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH--   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--   79 (165)
                      +.+++..+.+.+||++|++.+..++..+++++|++++|||++++.||+.+..|+....+....+.|+++|+||+|+..  
T Consensus        50 ~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~  129 (185)
T d2atxa1          50 VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP  129 (185)
T ss_dssp             EESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred             EeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccch
Confidence            457788999999999999999999999999999999999999999999887766555544446899999999999853  


Q ss_pred             ----------CCCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           80 ----------RRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        80 ----------~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                                .+.++.+++..++..++ ++|+||||++|.||+++|+.++++++
T Consensus       130 ~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             HHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence                      35678888999999887 68999999999999999999999875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1e-24  Score=151.65  Aligned_cols=120  Identities=43%  Similarity=0.776  Sum_probs=111.6

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +..++....+.+||++|++++..++..+++.+|++|+|||++++.+++.+..|+..+........|+++|+||+|+...+
T Consensus        46 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  125 (167)
T d1z0ja1          46 VQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR  125 (167)
T ss_dssp             EEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred             ccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcccc
Confidence            45677888999999999999999999999999999999999999999999999988877776789999999999998778


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+..++++.++..+++++++|||++|.||+++|.+|.++|
T Consensus       126 ~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         126 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            8899999999999999999999999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.9e-25  Score=152.37  Aligned_cols=121  Identities=44%  Similarity=0.808  Sum_probs=112.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +..++..+.+.+||++|++++..+++.+++++|++++|||.++..+++.+..|+..+.+....+.|++|++||+|+....
T Consensus        48 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  127 (170)
T d1r2qa_          48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR  127 (170)
T ss_dssp             EEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             eeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccc
Confidence            35678889999999999999999999999999999999999999999999999999877766789999999999998888


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .++.++++.++..+++++++|||++|+||+++|++|++.|.
T Consensus       128 ~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         128 AVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             cccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.3e-25  Score=154.00  Aligned_cols=122  Identities=25%  Similarity=0.393  Sum_probs=108.7

Q ss_pred             eeeCCEEEEEEEEeCCC---chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCC
Q 031132            2 ITIDNKPIKLQIWDTAG---QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDL   77 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G---~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl   77 (165)
                      +.++++.+.+.+||+++   ++++  ++..+++++|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+
T Consensus        46 ~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  123 (172)
T d2g3ya1          46 LMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  123 (172)
T ss_dssp             EEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred             eccCCceeeeeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccc
Confidence            56889999999999765   4444  678889999999999999999999999999988876543 67999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ...++++.++++.++..+++++++|||++|+|++++|..|+++|..++
T Consensus       124 ~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             cccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            877788999999999999999999999999999999999999998775

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-25  Score=153.07  Aligned_cols=121  Identities=34%  Similarity=0.585  Sum_probs=111.8

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+||++|++.+..++..+++++|++++|||++++.++..+..|+..+..... .++|++||+||+|+...
T Consensus        44 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~  123 (167)
T d1kaoa_          44 IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE  123 (167)
T ss_dssp             EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred             eecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhc
Confidence            56889999999999999999999999999999999999999999999999999998876554 57899999999999877


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      +.+...++..++..+++++++|||++|.|++++|+.|++++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            778889999999999999999999999999999999998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-24  Score=153.21  Aligned_cols=121  Identities=21%  Similarity=0.411  Sum_probs=105.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH--   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--   79 (165)
                      ..++++.+.+++||++|+++|..+++.+++++|++++|||++++.||+.+..|+.........+.|+++++||+|+..  
T Consensus        44 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~  123 (191)
T d2ngra_          44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP  123 (191)
T ss_dssp             EEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCH
T ss_pred             EeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccc
Confidence            457889999999999999999999999999999999999999999999998766555444446899999999999852  


Q ss_pred             ----------CCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           80 ----------RRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        80 ----------~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                                ...+..++++.++..+ +++|++|||++|.|++++|+.++..++
T Consensus       124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             HHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             hhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHh
Confidence                      2457888999999886 578999999999999999999887664

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.4e-25  Score=152.70  Aligned_cols=121  Identities=36%  Similarity=0.605  Sum_probs=110.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+||++|++.+..+++.+++++|++|+|||++++.+|+.+..|+..+.+... .+.|++||+||+|+...
T Consensus        44 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~  123 (167)
T d1c1ya_          44 VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             EESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred             EEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccc
Confidence            46788999999999999999999999999999999999999999999999999998876554 57899999999999887


Q ss_pred             CCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      .....++...++.+. ++++++|||++|+|++++|.+|+++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            788888888888774 789999999999999999999998874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-25  Score=155.18  Aligned_cols=119  Identities=32%  Similarity=0.612  Sum_probs=105.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..+++.+++++|++++|||++++.||+.+..|+..+.+.. .++|+++|+||+|+....
T Consensus        45 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~  123 (170)
T d1i2ma_          45 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK  123 (170)
T ss_dssp             ECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSC
T ss_pred             cccccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhh
Confidence            4567888999999999999999999999999999999999999999999999999888776 579999999999996544


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ..  .+...++...+++++++||++|+|++++|.+|++.|++
T Consensus       124 ~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         124 VK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             CT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             hh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            32  34456677789999999999999999999999998874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-23  Score=145.81  Aligned_cols=120  Identities=34%  Similarity=0.625  Sum_probs=110.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +..++..+.+.+||++|++.+...++.+++.++++++|||++++.+++.+..|+..+..... .++|+++|+||+|+. .
T Consensus        44 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~  122 (166)
T d1ctqa_          44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A  122 (166)
T ss_dssp             EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-C
T ss_pred             eeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-c
Confidence            45688899999999999999999999999999999999999999999999999999887664 578999999999985 4


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ..+..+++..+++.+++++++|||++|+||+++|++|++.|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            567788899999999999999999999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.4e-24  Score=147.34  Aligned_cols=122  Identities=49%  Similarity=0.870  Sum_probs=111.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      +.+++..+.+.+|||+|++.+..+++.+++++|++++|||.+++.+++.+..|+..+........|++++++|.|+. ..
T Consensus        44 i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~-~~  122 (166)
T d1g16a_          44 VDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TR  122 (166)
T ss_dssp             EESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TC
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh-hh
Confidence            56788999999999999999999999999999999999999999999999999888887776778999999999985 45


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ....++...++..+++++++|||++|+|++++|++|++.+.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            5678889999999999999999999999999999999988764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.2e-23  Score=146.46  Aligned_cols=120  Identities=43%  Similarity=0.817  Sum_probs=108.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH--   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--   79 (165)
                      +.++++.+.+.+||++|++++..+++.+++++|++++|||.+++.+++.+..|+..+........|+++++||+|+..  
T Consensus        45 i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~  124 (170)
T d1ek0a_          45 VTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG  124 (170)
T ss_dssp             EEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred             cccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeeccccccccc
Confidence            567899999999999999999999999999999999999999999999999999887766656789999999999843  


Q ss_pred             -CCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           80 -RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                       .+.+..++++.+++..+++|+++||++|.|++++|..|.++|
T Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             chhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence             356788999999999999999999999999999999987654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-23  Score=145.84  Aligned_cols=123  Identities=47%  Similarity=0.812  Sum_probs=112.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+++..+.+.+|||+|+++++.+++.+++++|++++|||+++..+++.+..|+..+..... ...|+++++||.|.. .
T Consensus        49 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~  127 (177)
T d1x3sa1          49 ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N  127 (177)
T ss_dssp             EEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-S
T ss_pred             EEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-c
Confidence            56789999999999999999999999999999999999999999999999999999876654 578999999999974 4


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      ..+...++..++..++++++++||++|+|++++|++|+++++++-
T Consensus       128 ~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         128 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccCc
Confidence            568888999999999999999999999999999999999988653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8.2e-24  Score=148.83  Aligned_cols=122  Identities=28%  Similarity=0.497  Sum_probs=106.9

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH--   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--   79 (165)
                      +.+++..+.+++||++|++.+..+++.+++++|++|+|||++++.||+.+..|+.........+.|+++|+||+|+..  
T Consensus        43 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~  122 (179)
T d1m7ba_          43 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV  122 (179)
T ss_dssp             EECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH
T ss_pred             ccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccc
Confidence            467889999999999999999999999999999999999999999999998877665544446899999999999853  


Q ss_pred             ----------CCCCCHHHHHHHHHHcC-CeEEEecCCCCCC-HHHHHHHHHHHHHH
Q 031132           80 ----------RRAVSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAFIKTAATIYK  123 (165)
Q Consensus        80 ----------~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~-i~~l~~~l~~~i~~  123 (165)
                                ...++.++...++.+++ .+|+||||++|+| ++++|+.+...+++
T Consensus       123 ~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence                      34578889999998887 5799999999985 99999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.9e-23  Score=145.95  Aligned_cols=121  Identities=36%  Similarity=0.641  Sum_probs=96.8

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~   80 (165)
                      +...+.+.+|||+|++++..++..+++.+|++++|||+++..+++.+..|+..+.....    ..+|+++++||+|+...
T Consensus        48 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          48 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             CcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            44556789999999999999999999999999999999999999999999988876543    46899999999999754


Q ss_pred             -CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           81 -RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        81 -~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                       ..++.++++.++..++ +++++|||++|.|++++|++|++.+++++
T Consensus       128 ~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         128 KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence             3467788888988885 78999999999999999999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-23  Score=145.57  Aligned_cols=121  Identities=26%  Similarity=0.504  Sum_probs=103.7

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-   80 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-   80 (165)
                      +.++++.+.+.+||++|++.+..++..+++++|++++|||+++..+|+.+..|+.........+.|++||+||+|+... 
T Consensus        46 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~  125 (183)
T d1mh1a_          46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK  125 (183)
T ss_dssp             EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred             eeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhh
Confidence            5689999999999999999999999999999999999999999999999987554444333367999999999998432 


Q ss_pred             -----------CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           81 -----------RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        81 -----------~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                                 ......+...++..++ ++|+||||++|.|++++|+.|++.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence                       2356667788888876 78999999999999999999999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.3e-22  Score=139.62  Aligned_cols=121  Identities=34%  Similarity=0.674  Sum_probs=108.1

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL   77 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl   77 (165)
                      +.+++..+.+.+||++|+.++...+..++..+|+++++||.+++.+++.+..|+..+.....    .+.|+++|+||+|+
T Consensus        48 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl  127 (174)
T d1wmsa_          48 LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI  127 (174)
T ss_dssp             EEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred             eeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccch
Confidence            45788899999999999999999999999999999999999999999999999988766543    46899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      . ++.+..++++.++.+. .+++++|||++|.||+++|++|++.|+.
T Consensus       128 ~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         128 S-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             S-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             h-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            5 4578889999999876 4889999999999999999999998863

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.9e-23  Score=142.88  Aligned_cols=123  Identities=14%  Similarity=0.270  Sum_probs=104.4

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA   78 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~   78 (165)
                      +.+||+.+.+.+|||+|+..+     .+++.+|++|+|||++++.||+.+..|+..+.....   ..+|+++|+||.|+.
T Consensus        45 i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d  119 (175)
T d2bmja1          45 MLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  119 (175)
T ss_dssp             EEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred             eecCceEEEEEEeeccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence            578999999999999999874     478899999999999999999999999988866543   567999999998874


Q ss_pred             C--CCCCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 031132           79 H--RRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  129 (165)
Q Consensus        79 ~--~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~  129 (165)
                      .  ...++..++..++.+ .+++|++|||++|.|+.++|..+++.+++.+.+++
T Consensus       120 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         120 ASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             SSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhhhcc
Confidence            3  455778888887655 46889999999999999999999999998776543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.1e-22  Score=137.83  Aligned_cols=116  Identities=40%  Similarity=0.776  Sum_probs=104.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH   79 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~   79 (165)
                      +.+++....+.+||++|...+.. .++.+++++|++|+|||++++.+++.+..|+..+.+... .++|++||+||+|+.+
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~  123 (165)
T d1z06a1          44 VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS  123 (165)
T ss_dssp             EEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred             eeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh
Confidence            45778889999999999887755 678899999999999999999999999999999887654 5789999999999987


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEecCCC---CCCHHHHHHHH
Q 031132           80 RRAVSTEEGEQFAKEHGLIFMEASAKT---AQNVEEAFIKT  117 (165)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~~i~~l~~~l  117 (165)
                      ...++.+++..+++.+++++++|||++   ++||+++|.+|
T Consensus       124 ~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHh
Confidence            778899999999999999999999986   56999999876

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.6e-22  Score=140.60  Aligned_cols=126  Identities=37%  Similarity=0.663  Sum_probs=108.2

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCC
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDL   77 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl   77 (165)
                      +...+..+.+.+||++|+..+...+..++..+|+++++||.++..++..+..|+..+.....    .++|+++|+||+|+
T Consensus        44 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl  123 (184)
T d1vg8a_          44 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL  123 (184)
T ss_dssp             EESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTS
T ss_pred             eeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecc
Confidence            34567788999999999999999999999999999999999999999999999988876543    35899999999998


Q ss_pred             CCCCCCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 031132           78 AHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  128 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~  128 (165)
                      .+ ..+..++...++. ..++++++|||++|.||+++|++|++.++++....
T Consensus       124 ~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         124 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV  174 (184)
T ss_dssp             SC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhccccc
Confidence            65 4566667766654 45789999999999999999999999998876644

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.86  E-value=7.5e-22  Score=136.46  Aligned_cols=119  Identities=25%  Similarity=0.352  Sum_probs=95.6

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~   81 (165)
                      .++.+.+.+.+||++|++.++..++.+++.++++++|||.++..++.+...++........ .+.|++||+||+|+.+..
T Consensus        40 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  119 (165)
T d1ksha_          40 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL  119 (165)
T ss_dssp             EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             eccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc
Confidence            3455567899999999999999999999999999999999999999988888776654433 679999999999996533


Q ss_pred             CCCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        82 ~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                        ...+.....     ....+++++|||++|+|++++|++|++++.+
T Consensus       120 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         120 --SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             --CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             --CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence              333333221     1224568999999999999999999998864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.86  E-value=4.5e-22  Score=139.80  Aligned_cols=120  Identities=24%  Similarity=0.352  Sum_probs=93.8

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ++.+.+.+.+||++|++.++.+++.++.++|++++|||+++..++.+...|+..+..... .+.|++|++||+|+..  .
T Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~  133 (182)
T d1moza_          56 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--A  133 (182)
T ss_dssp             EEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--C
T ss_pred             EeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--c
Confidence            344557899999999999999999999999999999999999999999988877654433 5789999999999853  2


Q ss_pred             CCHHHHHHH-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           83 VSTEEGEQF-----AKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .+..++...     +...++++++|||++|+|++++|++|++.+.+++
T Consensus       134 ~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         134 LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            344443332     2233567999999999999999999999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.85  E-value=8e-22  Score=137.58  Aligned_cols=116  Identities=21%  Similarity=0.346  Sum_probs=93.6

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ++++.+.+.+||++|++.++..|+.+++.+|++++|||+++..++.++..|+..+..... .++|++|++||+|+.... 
T Consensus        55 i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~-  133 (176)
T d1fzqa_          55 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-  133 (176)
T ss_dssp             EEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-
T ss_pred             eccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc-
Confidence            444457899999999999999999999999999999999999999999988877765443 578999999999996432 


Q ss_pred             CCHHHHHHH-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           83 VSTEEGEQF-----AKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                       ........     +....+++++|||++|+|++++|++|+++|
T Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         134 -PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             -CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             -cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence             33333222     122345699999999999999999998753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.85  E-value=1.4e-21  Score=135.23  Aligned_cols=116  Identities=20%  Similarity=0.349  Sum_probs=94.3

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +++..+.+.+||++|++.+...|..++.+++++++|||+++..++..+..|+..+..... .++|++||+||.|+.+.. 
T Consensus        42 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~-  120 (164)
T d1zd9a1          42 ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-  120 (164)
T ss_dssp             EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-
T ss_pred             eeeeeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh-
Confidence            444567899999999999999999999999999999999999999999998888766543 679999999999985432 


Q ss_pred             CCHHHHHHH-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           83 VSTEEGEQF-----AKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                       ...+....     +...+++++++||++|+|++++|++|++++
T Consensus       121 -~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         121 -DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             -CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             -hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence             33332222     122356799999999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.84  E-value=3e-21  Score=134.57  Aligned_cols=115  Identities=21%  Similarity=0.400  Sum_probs=93.1

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      +...+.+.+||++|+..++..+..+++.++++++|||+++..++..+..|+..+..... ...|+++++||+|+.+.  .
T Consensus        52 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~  129 (173)
T d1e0sa_          52 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--M  129 (173)
T ss_dssp             EETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--C
T ss_pred             eccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--c
Confidence            34456889999999999999999999999999999999999999999998887765433 67999999999999643  3


Q ss_pred             CHHHHHHH-----HHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           84 STEEGEQF-----AKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        84 ~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...++...     +...++++++|||++|+|++++|++|.+++
T Consensus       130 ~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         130 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            33333332     222356789999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.77  E-value=7.2e-19  Score=119.88  Aligned_cols=117  Identities=21%  Similarity=0.360  Sum_probs=95.8

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~   81 (165)
                      ..++..+.+.+||++|...+...+..+++.+++++++||.++..++..+..|+..+..... ...|+++++||.|+....
T Consensus        38 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~  117 (160)
T d1r8sa_          38 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (160)
T ss_dssp             EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence            4566778899999999999999999999999999999999999999999888887765543 678999999999986432


Q ss_pred             CCCHHHHHH-----HHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           82 AVSTEEGEQ-----FAKEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        82 ~~~~~~~~~-----~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                        ...+...     ++...++++++|||++|+|++++|++|.+++
T Consensus       118 --~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         118 --NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             --CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             --cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence              2333222     2333467899999999999999999998763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.2e-17  Score=117.27  Aligned_cols=123  Identities=18%  Similarity=0.212  Sum_probs=88.0

Q ss_pred             eeeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH----------H-HHHHHHHHHHhcCCCCeEEE
Q 031132            2 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----------H-LASWLEDARQHANANMTIML   70 (165)
Q Consensus         2 ~~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~----------~-~~~~~~~i~~~~~~~~p~iv   70 (165)
                      +.+++..+.+++|||+|++.++.+|..+++.++++++|+|.++..++.          + ...|...+........|+++
T Consensus        35 ~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~l  114 (195)
T d1svsa1          35 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL  114 (195)
T ss_dssp             EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred             EEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEE
Confidence            345666788999999999999999999999999999999998876542          2 22333333333336789999


Q ss_pred             EeeCCCCCCC---------------CCCCHHHHHH-----HHHH------cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           71 IGNKCDLAHR---------------RAVSTEEGEQ-----FAKE------HGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        71 v~nK~Dl~~~---------------~~~~~~~~~~-----~~~~------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      ++||+|+...               ......+...     +...      ..+.+++|||+++.||+++|+.+.+.|+++
T Consensus       115 v~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             EEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            9999996211               1112222211     1111      134578999999999999999999988765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.68  E-value=6.5e-17  Score=112.08  Aligned_cols=113  Identities=24%  Similarity=0.339  Sum_probs=86.5

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      ..+.+.+||+++.+.++..+..++..++++++++|.++..++.....+......... ...|+++|+||+|+....  ..
T Consensus        57 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~  134 (177)
T d1zj6a1          57 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TV  134 (177)
T ss_dssp             TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred             cceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cH
Confidence            346789999999999999999999999999999999999999887776665554433 689999999999986433  23


Q ss_pred             HHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           86 EEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        86 ~~~~~~~-----~~~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .+.....     ...+++++++||++|+|++++|++|.+++
T Consensus       135 ~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         135 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            3333322     22346799999999999999999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=6e-17  Score=114.05  Aligned_cols=124  Identities=15%  Similarity=0.152  Sum_probs=91.4

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-----------hHHHHHHHHHHHHHhcCCCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-----------TFNHLASWLEDARQHANANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~-----------s~~~~~~~~~~i~~~~~~~~p~ivv   71 (165)
                      +++...+.+++||++|++.++..|..++..++++++++|.++..           .++....|...+......+.|++++
T Consensus        39 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v  118 (200)
T d2bcjq2          39 PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF  118 (200)
T ss_dssp             EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEE
T ss_pred             EEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEe
Confidence            45556678999999999999999999999999999999998753           2344555666555554478999999


Q ss_pred             eeCCCCCCCC----------------CCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 031132           72 GNKCDLAHRR----------------AVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus        72 ~nK~Dl~~~~----------------~~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      +||.|+....                ..+......+...          ..+.++++||++|.|++++|+.+.+.|+++.
T Consensus       119 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         119 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             EECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            9999973211                1122222222211          1345789999999999999999999998765


Q ss_pred             h
Q 031132          126 Q  126 (165)
Q Consensus       126 ~  126 (165)
                      .
T Consensus       199 l  199 (200)
T d2bcjq2         199 L  199 (200)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.4e-15  Score=107.16  Aligned_cols=124  Identities=19%  Similarity=0.223  Sum_probs=83.9

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHhcC-CCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLASWLEDARQHAN-ANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~----------s~~~~~~~~~~i~~~~~-~~~p~ivv   71 (165)
                      +++.+.+.+++||++|++.++..|..++++++++++++|.++..          .+++...++..+..... .+.|++|+
T Consensus        38 ~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv  117 (200)
T d1zcba2          38 DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILF  117 (200)
T ss_dssp             EEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEE
T ss_pred             EEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEE
Confidence            45566678999999999999999999999999999999998753          34455555555543332 68999999


Q ss_pred             eeCCCCCCC----------------CCCCHHHHHHHHHH-----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 031132           72 GNKCDLAHR----------------RAVSTEEGEQFAKE-----------HGLIFMEASAKTAQNVEEAFIKTAATIYKK  124 (165)
Q Consensus        72 ~nK~Dl~~~----------------~~~~~~~~~~~~~~-----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~  124 (165)
                      +||+|+.+.                ..-....+..+...           ..+.++++||+++.||+++|+.+.+.|+++
T Consensus       118 ~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         118 LNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             EECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            999997321                01122333332221           124577899999999999999999998876


Q ss_pred             Hh
Q 031132          125 IQ  126 (165)
Q Consensus       125 ~~  126 (165)
                      ..
T Consensus       198 ~l  199 (200)
T d1zcba2         198 NL  199 (200)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=103.46  Aligned_cols=115  Identities=23%  Similarity=0.334  Sum_probs=90.3

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCH
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVST   85 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~   85 (165)
                      +.+.+.+||.+|...+...+..++..++++++++|..+..++.....++........ ...|+++++||.|+....  ..
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~--~~  124 (169)
T d1upta_          47 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TS  124 (169)
T ss_dssp             TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred             CceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc--cH
Confidence            356788999999999999999999999999999999988888777776555543332 678999999999996433  22


Q ss_pred             HHHHH-----HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           86 EEGEQ-----FAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        86 ~~~~~-----~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .+...     ++...+++++++||++|+|++++|++|.+.+.+
T Consensus       125 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         125 SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            22222     233446789999999999999999999987744

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=1.8e-15  Score=105.20  Aligned_cols=108  Identities=18%  Similarity=0.117  Sum_probs=73.9

Q ss_pred             EEEEEEeCCCchh--------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~--------~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+|||+|...        +.......+++||++++|+|++++..... ..|+..+.. ...+.|+++|+||+|+...
T Consensus        53 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          53 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAAKY  130 (178)
T ss_dssp             EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGCSS
T ss_pred             eeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheec-cccchhhhhhhcccccccC
Confidence            4689999999743        23333455789999999999988644322 233333333 3357899999999998542


Q ss_pred             CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .   .+....+....+ ..++++||++|+|+++++++|.+.+
T Consensus       131 ~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         131 P---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             H---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             H---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            1   222333344444 4689999999999999999887643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=2.1e-14  Score=97.32  Aligned_cols=114  Identities=21%  Similarity=0.277  Sum_probs=89.6

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~   82 (165)
                      +....+.+.+||+.|...+...++.++..++++++++|.++..++.....++........ .+.|+++++||.|+..  .
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~  116 (166)
T d2qtvb1          39 LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--A  116 (166)
T ss_dssp             ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--C
T ss_pred             eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--c
Confidence            344455688999999999999999999999999999999999998888887777665544 6789999999999854  2


Q ss_pred             CCHHHHHHHHH------------HcCCeEEEecCCCCCCHHHHHHHHHH
Q 031132           83 VSTEEGEQFAK------------EHGLIFMEASAKTAQNVEEAFIKTAA  119 (165)
Q Consensus        83 ~~~~~~~~~~~------------~~~~~~~~vSa~~~~~i~~l~~~l~~  119 (165)
                      ....+......            ...+++++|||++|+|++++|++|.+
T Consensus       117 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            34443332211            12346899999999999999999864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=3.6e-15  Score=107.42  Aligned_cols=124  Identities=13%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLASWLEDARQHAN-ANMTIMLIG   72 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~----------s~~~~~~~~~~i~~~~~-~~~p~ivv~   72 (165)
                      ++.+.+.+++||++|++.++..|..++++++++++++|.++..          .+.+...++..+..... .++|++|++
T Consensus        42 ~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~  121 (221)
T d1azta2          42 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFL  121 (221)
T ss_dssp             EEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEE
T ss_pred             EEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEe
Confidence            4445678999999999999999999999999999999998642          34444455555544432 679999999


Q ss_pred             eCCCCCCCC----CCC--------------------------HHHHHHH-----HHH--------cCCeEEEecCCCCCC
Q 031132           73 NKCDLAHRR----AVS--------------------------TEEGEQF-----AKE--------HGLIFMEASAKTAQN  109 (165)
Q Consensus        73 nK~Dl~~~~----~~~--------------------------~~~~~~~-----~~~--------~~~~~~~vSa~~~~~  109 (165)
                      ||+|+.+++    ...                          ...+..+     ...        ..+..+++||.++.|
T Consensus       122 NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~n  201 (221)
T d1azta2         122 NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN  201 (221)
T ss_dssp             ECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHH
T ss_pred             chhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHH
Confidence            999984211    000                          1122221     111        123467899999999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 031132          110 VEEAFIKTAATIYKKIQD  127 (165)
Q Consensus       110 i~~l~~~l~~~i~~~~~~  127 (165)
                      ++.+|+.+.+.|++....
T Consensus       202 i~~vf~~v~d~I~~~~l~  219 (221)
T d1azta2         202 IRRVFNDCRDIIQRMHLR  219 (221)
T ss_dssp             HHHHHHTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999887654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.51  E-value=4.1e-14  Score=97.85  Aligned_cols=111  Identities=23%  Similarity=0.289  Sum_probs=84.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCCCCHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~   87 (165)
                      ..+.+||+.++..+...+..+++..+++++++|.++...+.....++........ .+.|+++++||.|+..  .....+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~  134 (186)
T d1f6ba_          57 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEER  134 (186)
T ss_dssp             EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHH
T ss_pred             cccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHH
Confidence            4578999999999999999999999999999999999888877776655554332 6799999999999854  334444


Q ss_pred             HHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           88 GEQFAKE-----------------HGLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        88 ~~~~~~~-----------------~~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      +......                 .++++++|||++|+|++++|+||.+++
T Consensus       135 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         135 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            4433221                 134689999999999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=6.3e-14  Score=97.32  Aligned_cols=112  Identities=15%  Similarity=0.041  Sum_probs=75.1

Q ss_pred             EEEEEEEeCCCchhh-------hhhhHhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            8 PIKLQIWDTAGQESF-------RSITRSYYRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~-------~~~~~~~~~~ad~vi~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ...+.+|||+|....       .......+..++++++++|.....  .......++....... .++|+++|+||+|+.
T Consensus        48 ~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~  126 (180)
T d1udxa2          48 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLL  126 (180)
T ss_dssp             SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTS
T ss_pred             CCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhh
Confidence            345889999995321       122334578899999999987642  3333333333322111 357999999999985


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ...  ............+.+++++||++|+|++++++.|.+.+.
T Consensus       127 ~~~--~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         127 EEE--AVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             CHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hHH--HHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            432  122334445556889999999999999999998877763

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=7.7e-14  Score=96.12  Aligned_cols=117  Identities=18%  Similarity=0.107  Sum_probs=76.6

Q ss_pred             eCCEEEEEEEEeCCCch---------hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031132            4 IDNKPIKLQIWDTAGQE---------SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK   74 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK   74 (165)
                      ++.....+.+||++|..         .+.......+..+|++++++|.+...... ...++..+...   ++|+++|+||
T Consensus        43 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~-~~~~~~~l~~~---~~pviiv~NK  118 (171)
T d1mkya1          43 VEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKE-DESLADFLRKS---TVDTILVANK  118 (171)
T ss_dssp             EEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHH-HHHHHHHHHHH---TCCEEEEEES
T ss_pred             ccccccccccccccceeeeeccccccccccccccccccCcEEEEeeccccccccc-ccccccccccc---cccccccchh
Confidence            34444578999999852         13334455678999999999987754332 23334444433   6899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 031132           75 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  126 (165)
Q Consensus        75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~  126 (165)
                      +|+..+  ...+....+......+++++||++|.|+++++++|.+.+.++..
T Consensus       119 ~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         119 AENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGL  168 (171)
T ss_dssp             CCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCCC
Confidence            998532  11111122222223458999999999999999999987765443

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.2e-14  Score=98.99  Aligned_cols=104  Identities=21%  Similarity=0.250  Sum_probs=76.9

Q ss_pred             EEEEEEeCCCchhh--------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESF--------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~--------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      ..+.+||++|..+.        ......++..+|++++++|.++..++.....|...+.... .+.|+++|+||+|+...
T Consensus        49 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          49 MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGE  127 (161)
T ss_dssp             EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCC
T ss_pred             ceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhh
Confidence            46789999996432        1223456789999999999998877776666655555443 57899999999998543


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ...       +.+..+.+++++||++|+|+++++++|.+.
T Consensus       128 ~~~-------~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         128 TLG-------MSEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CCE-------EEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHH-------HHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            211       011235679999999999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.44  E-value=2.8e-13  Score=94.19  Aligned_cols=111  Identities=18%  Similarity=0.131  Sum_probs=77.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TE   86 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~   86 (165)
                      ..+.++|++|+..+.......+..+|++++|+|+++...... ...+..+. .  .++|+++|+||+|+.......  ..
T Consensus        59 ~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~-~~~~~~~~-~--~~~p~iiv~NKiD~~~~~~~~~~~~  134 (179)
T d1wb1a4          59 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT-GEHMLILD-H--FNIPIIVVITKSDNAGTEEIKRTEM  134 (179)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHH-HHHHHHHH-H--TTCCBCEEEECTTSSCHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhccccccccccccccchhh-hhhhhhhh-h--cCCcceeccccccccCHHHHHHHHH
Confidence            457899999999998888888999999999999998543322 22222222 2  478999999999986432111  11


Q ss_pred             HHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           87 EGEQFAKEH----GLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        87 ~~~~~~~~~----~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      ....+....    +.+++++||++|+|++++++.|.+.+-.
T Consensus       135 ~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         135 IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            112222221    3579999999999999999988876643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.41  E-value=2.3e-13  Score=98.12  Aligned_cols=116  Identities=21%  Similarity=0.177  Sum_probs=77.9

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      ++.....+.|+||||+..|.......+..+|++|+|+|+.+.-.... ...+..+..   .++|+++++||+|+......
T Consensus        65 ~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~  140 (227)
T d1g7sa4          65 IRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRV  140 (227)
T ss_dssp             GGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCC
T ss_pred             ecccccccccccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhh
Confidence            34445578999999999988877778899999999999987533322 222333332   46899999999998543211


Q ss_pred             C-------------HH-------HH----HHHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           84 S-------------TE-------EG----EQFAKE--------------HGLIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        84 ~-------------~~-------~~----~~~~~~--------------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      .             ..       ..    ..+...              ...+++++||.+|.|++++++.|.....+
T Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         141 HEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             CTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            1             00       00    001111              01358999999999999999988776533

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.40  E-value=1.1e-12  Score=92.23  Aligned_cols=112  Identities=14%  Similarity=0.124  Sum_probs=77.6

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC--C
Q 031132            7 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--S   84 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~   84 (165)
                      ....+.++||||+..|......-+..+|++++|+|+.+........+.+..+...  ...+++++.||+|+.+....  .
T Consensus        76 ~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~--~~~~iiv~inK~D~~d~~~~~~~  153 (195)
T d1kk1a3          76 FVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALEN  153 (195)
T ss_dssp             EEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             CceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh--cCccceeeeecccchhhHHHHHH
Confidence            3566899999999999888877788999999999998753233344444433333  23457889999998643211  1


Q ss_pred             HHHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           85 TEEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        85 ~~~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      ......+....   .++++++||++|+|++++++.+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         154 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            11222223222   3579999999999999999888764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=2.2e-12  Score=87.43  Aligned_cols=105  Identities=20%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             EEEEEEEEeCCCchh--------h-hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            7 KPIKLQIWDTAGQES--------F-RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~--------~-~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      ....+.+|||+|...        + .......+..+|++++|+|++++........+.    ..  ...++++++||.|+
T Consensus        46 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~----~~--~~~~~i~~~~k~d~  119 (160)
T d1xzpa2          46 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE----RI--KNKRYLVVINKVDV  119 (160)
T ss_dssp             TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHH----HH--TTSSEEEEEEECSS
T ss_pred             CCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhh----hc--ccccceeeeeeccc
Confidence            345688999999521        1 112233467899999999999876544332211    11  45789999999998


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .+..  ..++... ....+.+++++||++|+|+++++++|.++
T Consensus       120 ~~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         120 VEKI--NEEEIKN-KLGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             CCCC--CHHHHHH-HHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             cchh--hhHHHHH-HhCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            6532  3333322 22235679999999999999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.36  E-value=2.5e-12  Score=91.22  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCH--
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--   85 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--   85 (165)
                      ...+.+.|+||+..|......-+..+|++|+|+|+.+.-.....+..+..+...  .-.|++|+.||+|+.+......  
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHH
Confidence            346899999999999887777788999999999998753222233333333222  2248899999999964321111  


Q ss_pred             HHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHH
Q 031132           86 EEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAAT  120 (165)
Q Consensus        86 ~~~~~~~~~~---~~~~~~vSa~~~~~i~~l~~~l~~~  120 (165)
                      .....+....   .++++++||++|.|++++++.|...
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            1111122211   3679999999999999999987765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=2.4e-12  Score=89.10  Aligned_cols=107  Identities=19%  Similarity=0.143  Sum_probs=68.0

Q ss_pred             EEEEeCCCch-----------h----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHH----------HHHHHHHHhcCCC
Q 031132           11 LQIWDTAGQE-----------S----FRSITRSYYRGAAGALLVYDITRRETFNHLA----------SWLEDARQHANAN   65 (165)
Q Consensus        11 ~~l~Dt~G~~-----------~----~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~----------~~~~~i~~~~~~~   65 (165)
                      +.+|||||..           .    +.......++.+|++++|+|++.........          ..+..+. .  .+
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~--~~  121 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-E--LD  121 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-H--TT
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH-H--cC
Confidence            5789999951           1    1223344567899999999997653322111          1122222 2  47


Q ss_pred             CeEEEEeeCCCCCCCCCCCHHHHHHHHHHcC-------CeEEEecCCCCCCHHHHHHHHHHHHHH
Q 031132           66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-------LIFMEASAKTAQNVEEAFIKTAATIYK  123 (165)
Q Consensus        66 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSa~~~~~i~~l~~~l~~~i~~  123 (165)
                      +|+++|+||+|+....   ......+.....       ..++++||++|+|+++++++|.+.+-+
T Consensus       122 ~p~iiv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         122 IPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeeehhhhH---HHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            8999999999975422   112222222222       238899999999999999999887754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.1e-11  Score=85.16  Aligned_cols=76  Identities=21%  Similarity=0.321  Sum_probs=57.5

Q ss_pred             CCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHH-hc--CCCCeEEEEeeCCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQ-HA--NANMTIMLIGNKCDLAH   79 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~ad~vi~v~D~~~~~s-~~~~~~~~~~i~~-~~--~~~~p~ivv~nK~Dl~~   79 (165)
                      ++..+.+.+||++|+++++ ..+..++..++++++|+|+++..+ +.+...++..+.. ..  ...+|++|++||+|+..
T Consensus        43 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          43 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             eeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            3455679999999999885 578889999999999999999765 3455555544432 22  14689999999999965


Q ss_pred             C
Q 031132           80 R   80 (165)
Q Consensus        80 ~   80 (165)
                      .
T Consensus       123 a  123 (207)
T d2fh5b1         123 A  123 (207)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.22  E-value=5.1e-12  Score=87.74  Aligned_cols=108  Identities=16%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             EEEEEeCCCchhh----hhhh---HhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcC---CCCeEEEEeeCCCC
Q 031132           10 KLQIWDTAGQESF----RSIT---RSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHAN---ANMTIMLIGNKCDL   77 (165)
Q Consensus        10 ~~~l~Dt~G~~~~----~~~~---~~~~~~ad~vi~v~D~~~~~s~~--~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl   77 (165)
                      .+.+|||||..+.    ..+.   ...+..++.++++++........  +...+.........   .++|+++|+||+|+
T Consensus        50 ~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl  129 (185)
T d1lnza2          50 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM  129 (185)
T ss_dssp             EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred             EEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccch
Confidence            4789999996331    1122   22356789999999876543222  22222222222211   46899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ...    ......+...+  +.+++.+||++|+|++++++.|.+.+
T Consensus       130 ~~~----~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         130 PEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             TTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             HhH----HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            542    22233334333  67799999999999999999887765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.20  E-value=1.1e-11  Score=87.33  Aligned_cols=114  Identities=17%  Similarity=0.110  Sum_probs=77.2

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      ++.....+.+.||||+..|......-+..+|++++|+|+++... ......+..+...  ...|++++.||+|+......
T Consensus        61 ~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~  137 (196)
T d1d2ea3          61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI--GVEHVVVYVNKADAVQDSEM  137 (196)
T ss_dssp             EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHH
T ss_pred             EEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh--cCCcEEEEEecccccccHHH
Confidence            44445678899999999998877777899999999999987532 2333434443333  23578999999998543211


Q ss_pred             ---CHHHHHHHHHHcC-----CeEEEecCCCC----------CCHHHHHHHHHHH
Q 031132           84 ---STEEGEQFAKEHG-----LIFMEASAKTA----------QNVEEAFIKTAAT  120 (165)
Q Consensus        84 ---~~~~~~~~~~~~~-----~~~~~vSa~~~----------~~i~~l~~~l~~~  120 (165)
                         -..+++.+....+     ++++++||++|          +|+.+++++|.+.
T Consensus       138 ~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence               1123334444443     56999999987          4777777766543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=6.6e-11  Score=81.91  Aligned_cols=108  Identities=19%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             EEEEEeCCCchhh------------hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132           10 KLQIWDTAGQESF------------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus        10 ~~~l~Dt~G~~~~------------~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .+.++|++|....            .......++.+|++++|+|++..... ....++..+..   .+.|+++++||+|+
T Consensus        57 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~---~~~~~i~v~nK~D~  132 (186)
T d1mkya2          57 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMER---RGRASVVVFNKWDL  132 (186)
T ss_dssp             EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGG
T ss_pred             eeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHH---cCCceeeeccchhh
Confidence            4688899987432            22344456789999999999865322 22223333322   46899999999998


Q ss_pred             CCCCCCCHHHHHHHHHH----c-CCeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           78 AHRRAVSTEEGEQFAKE----H-GLIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~----~-~~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      .........+......+    . ..+++++||++|.|++++++.|.+.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         133 VVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             STTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            64443333333332222    1 35699999999999999999996644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.07  E-value=1.4e-09  Score=75.66  Aligned_cols=89  Identities=11%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHH----cCCeEEEec
Q 031132           28 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----HGLIFMEAS  103 (165)
Q Consensus        28 ~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~vS  103 (165)
                      ..+..+|++++|+|++.+... ....++..+..   .++|+++|+||+|+....... +....+...    ...+++++|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhccccccc-ccccccccccc---ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEEe
Confidence            345578999999999865322 22233333332   368999999999985433221 222222222    345699999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 031132          104 AKTAQNVEEAFIKTAATI  121 (165)
Q Consensus       104 a~~~~~i~~l~~~l~~~i  121 (165)
                      |++|.|+++++++|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.02  E-value=1.6e-09  Score=77.51  Aligned_cols=100  Identities=21%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCCCCC--
Q 031132            8 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-TIMLIGNKCDLAHRRAVS--   84 (165)
Q Consensus         8 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~~~~~~--   84 (165)
                      ...+.+.|+||+..|-.....-+..+|++++|+|+.....-. ....+..+ ..  .++ .++++.||+|+.+..+..  
T Consensus        88 ~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~-~~--~gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIA-SL--LGIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHH-HH--TTCCEEEEEEECTTTTTSCHHHHH
T ss_pred             ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHH-HH--cCCCEEEEEEEccccccccceehh
Confidence            346889999999999887777789999999999998753222 22222222 22  354 478899999986532211  


Q ss_pred             --HHHHHHHHHHcCC-----eEEEecCCCCCCHH
Q 031132           85 --TEEGEQFAKEHGL-----IFMEASAKTAQNVE  111 (165)
Q Consensus        85 --~~~~~~~~~~~~~-----~~~~vSa~~~~~i~  111 (165)
                        ..+...+....++     +++++||.+|+|+.
T Consensus       164 ~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence              1223334444443     57899999999973

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=2.9e-10  Score=80.40  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=63.7

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA   82 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~   82 (165)
                      +...+..+.|+||||+..|......-+..+|++|+|+|+++...... ...+..+..   .++| +++++||+|+.+...
T Consensus        62 ~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~---~gi~~iiv~iNK~D~~~~~~  137 (204)
T d2c78a3          62 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFMNKVDMVDDPE  137 (204)
T ss_dssp             EECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCCCHH
T ss_pred             EEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEEecccCCCHH
Confidence            34445568899999999998877778899999999999987644432 233333333   3565 777899999854221


Q ss_pred             C---CHHHHHHHHHHcC-----CeEEEecCC
Q 031132           83 V---STEEGEQFAKEHG-----LIFMEASAK  105 (165)
Q Consensus        83 ~---~~~~~~~~~~~~~-----~~~~~vSa~  105 (165)
                      .   -..++..+....+     ++++..|+.
T Consensus       138 ~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~  168 (204)
T d2c78a3         138 LLDLVEMEVRDLLNQYEFPGDEVPVIRGSAL  168 (204)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcccceeeeeech
Confidence            1   1123333444433     447888764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.88  E-value=7.8e-09  Score=75.96  Aligned_cols=71  Identities=21%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      +.++...+.|+||||...|......-++.+|+.|+|+|+.+.-.......| .....   .+.|.++++||+|..
T Consensus        66 ~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          66 CFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             EEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTST
T ss_pred             eccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEeccccc
Confidence            444455689999999999988888889999999999999987554433333 33332   479999999999985

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.83  E-value=1.8e-08  Score=73.72  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA   78 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~   78 (165)
                      ..+...+.|+||||+.+|......-++.+|++|+|+|+.+.-.......| ..+..   .++|.++++||+|..
T Consensus        63 ~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          63 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCEEEEEECGGGC
T ss_pred             cccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh---ccccccccccccccc
Confidence            33344688999999999999888889999999999999976544433333 33333   368999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1.2e-08  Score=73.62  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             eeCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH------HHHHHHHHHHHHhcCCCCe-EEEEeeCC
Q 031132            3 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLASWLEDARQHANANMT-IMLIGNKC   75 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~------~~~~~~~~~i~~~~~~~~p-~ivv~nK~   75 (165)
                      .+......+.|.||||+..|...+..-+..+|++|+|+|+....-.      ......+.....   .++| +++++||+
T Consensus        78 ~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKm  154 (239)
T d1f60a3          78 KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKM  154 (239)
T ss_dssp             EEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECG
T ss_pred             EeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH---cCCCeEEEEEECC
Confidence            3445567899999999999988888888999999999999864211      123332222222   3555 78899999


Q ss_pred             CCCCCCCCC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 031132           76 DLAHRRAVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEE  112 (165)
Q Consensus        76 Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~  112 (165)
                      |+.+.....    ..+...+....+     ++++.+|+..|+|+-+
T Consensus       155 D~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         155 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            986432111    122333444444     4589999999998644

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.80  E-value=6.2e-09  Score=74.31  Aligned_cols=106  Identities=19%  Similarity=0.231  Sum_probs=70.0

Q ss_pred             eCCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH------HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            4 IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         4 i~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~------~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      ++.....+.|.||||+..|......-+.-+|++|+|+|+.+....      ......+......  .-.+++++.||+|+
T Consensus        76 ~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~  153 (224)
T d1jnya3          76 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDL  153 (224)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGG
T ss_pred             EecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccC
Confidence            444556789999999999999888889999999999999985321      1222222222222  23468889999998


Q ss_pred             CCCCCCCH-------HHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 031132           78 AHRRAVST-------EEGEQFAKEHG-----LIFMEASAKTAQNVEE  112 (165)
Q Consensus        78 ~~~~~~~~-------~~~~~~~~~~~-----~~~~~vSa~~~~~i~~  112 (165)
                      .... ...       .....+...++     ++++++||.+|.|+.+
T Consensus       154 ~~~~-~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         154 TEPP-YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             SSST-TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CCcc-ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            6422 111       12233333333     4589999999999753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.74  E-value=3.3e-08  Score=71.44  Aligned_cols=106  Identities=21%  Similarity=0.202  Sum_probs=59.6

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH------HHHHHHHHHHHHhcCCCC-eEEEEeeCCCCC
Q 031132            6 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLASWLEDARQHANANM-TIMLIGNKCDLA   78 (165)
Q Consensus         6 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~------~~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~   78 (165)
                      .....+.+.||||+..|-.....-...+|++++|+|+.+..--      ......+..+..   .++ +++++.||+|+.
T Consensus        99 ~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3          99 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEP  175 (245)
T ss_dssp             CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTST
T ss_pred             cccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCC
Confidence            3345689999999999988777778899999999999874211      022232322222   244 478899999986


Q ss_pred             CCCCCCHH-------HHHHHHHHc-------CCeEEEecCCCCCCHHHHHH
Q 031132           79 HRRAVSTE-------EGEQFAKEH-------GLIFMEASAKTAQNVEEAFI  115 (165)
Q Consensus        79 ~~~~~~~~-------~~~~~~~~~-------~~~~~~vSa~~~~~i~~l~~  115 (165)
                      ... ....       +...+....       .++++++||++|+|+.++++
T Consensus       176 ~~~-~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         176 SVQ-WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TCS-SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             ccc-hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            422 1121       122222222       24699999999999977544

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=2e-08  Score=68.43  Aligned_cols=107  Identities=20%  Similarity=0.132  Sum_probs=65.6

Q ss_pred             EEEEEeCCCchhhh---------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132           10 KLQIWDTAGQESFR---------SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~---------~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      .+.+||++|.....         .........+++++++.|.+......  ..+...+..   ...|.++++||.|+...
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~~---~~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          54 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD--EMVLNKLRE---GKAPVILAVNKVDNVQE  128 (179)
T ss_dssp             EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHH--HHHHHHHHS---SSSCEEEEEESTTTCCC
T ss_pred             eeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchhH--HHHHHHhhh---ccCceeeeeeeeeccch
Confidence            35678888754221         11222244678888888877643222  222222222   45788999999997654


Q ss_pred             CCCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Q 031132           81 RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATI  121 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~l~~~l~~~i  121 (165)
                      ..........+...++ .+++++||++|+|++++++.|.+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             hhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            3222233344444555 5799999999999999998876643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=4.6e-08  Score=68.13  Aligned_cols=76  Identities=20%  Similarity=0.292  Sum_probs=53.3

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhh----cCCcEEEEEEeCCC-hhhHHHHHHHHHHH----HHhcCCCCeEEEEeeCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYY----RGAAGALLVYDITR-RETFNHLASWLEDA----RQHANANMTIMLIGNKC   75 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~----~~ad~vi~v~D~~~-~~s~~~~~~~~~~i----~~~~~~~~p~ivv~nK~   75 (165)
                      +.....+.+||++|++.++..+..++    ..++.+++++|+.+ ..+++....|+..+    ......+.|+++++||+
T Consensus        42 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~  121 (209)
T d1nrjb_          42 DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS  121 (209)
T ss_dssp             TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECT
T ss_pred             EeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEee
Confidence            33445678999999998777666554    45689999999775 44556666555433    33333679999999999


Q ss_pred             CCCCC
Q 031132           76 DLAHR   80 (165)
Q Consensus        76 Dl~~~   80 (165)
                      |+...
T Consensus       122 D~~~~  126 (209)
T d1nrjb_         122 ELFTA  126 (209)
T ss_dssp             TSTTC
T ss_pred             ccccc
Confidence            98653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=3.8e-08  Score=70.07  Aligned_cols=86  Identities=16%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             HhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHH--HcCCeEEEec
Q 031132           27 RSYYRGAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK--EHGLIFMEAS  103 (165)
Q Consensus        27 ~~~~~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~vS  103 (165)
                      +....|.|.+++|+++.++ .+...+..++......   ++|.+||+||+||.++..  ......+..  ..+++++.+|
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEec
Confidence            4457899999999998774 4566777776655544   789999999999954221  112222222  2357899999


Q ss_pred             CCCCCCHHHHHHHH
Q 031132          104 AKTAQNVEEAFIKT  117 (165)
Q Consensus       104 a~~~~~i~~l~~~l  117 (165)
                      ++++.|++++...+
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999987765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.44  E-value=3.2e-07  Score=67.08  Aligned_cols=93  Identities=11%  Similarity=0.055  Sum_probs=63.7

Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecC
Q 031132           25 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  104 (165)
Q Consensus        25 ~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  104 (165)
                      .....++.+|+||+|+|+.++.+...-     .+.... .++|.++|+||+||.+..  .......+....+...+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~-----~l~~~~-~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL-KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC-SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCH-----HHHHHH-cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeec
Confidence            345578999999999999987654311     122222 367999999999995422  122223334445678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q 031132          105 KTAQNVEEAFIKTAATIYKKI  125 (165)
Q Consensus       105 ~~~~~i~~l~~~l~~~i~~~~  125 (165)
                      .++.+..++...+.+.+....
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~  100 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKF  100 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHH
T ss_pred             ccCCCccccchhhhhhhhhhh
Confidence            999999988888777655543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=2e-07  Score=70.32  Aligned_cols=69  Identities=22%  Similarity=0.263  Sum_probs=55.0

Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132            5 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus         5 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      +++.+.+.|+||||+..|......-++-+|++++|+|+.+........-|.. ...   .+.|+++++||+|.
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~---~~~p~i~viNKiDr  160 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG---ERIKPVVVINKVDR  160 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCEEEEEEECHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH---cCCCeEEEEECccc
Confidence            4567889999999999998888888899999999999998755554433333 222   46899999999996

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.31  E-value=1.4e-06  Score=61.59  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=66.0

Q ss_pred             EEEEEeCCCchhhhhhh---Hhhh--cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031132           10 KLQIWDTAGQESFRSIT---RSYY--RGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR   81 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~---~~~~--~~ad~vi~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~   81 (165)
                      .+.+.|++|+..+....   ....  ...+.+++++|+..   +..+.........+..+  ...|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            36789999997653321   2222  24678999999754   33332222222222222  368999999999986422


Q ss_pred             CCCHHH-----------------------HHH---HHHH--cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 031132           82 AVSTEE-----------------------GEQ---FAKE--HGLIFMEASAKTAQNVEEAFIKTAATIY  122 (165)
Q Consensus        82 ~~~~~~-----------------------~~~---~~~~--~~~~~~~vSa~~~~~i~~l~~~l~~~i~  122 (165)
                      ......                       ...   ....  ..++++++||++|+|+++++..|.+...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            110000                       000   0111  2467999999999999999998887643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=9.5e-08  Score=68.17  Aligned_cols=87  Identities=14%  Similarity=0.139  Sum_probs=62.1

Q ss_pred             HhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEe
Q 031132           27 RSYYRGAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE---QFAKEHGLIFMEA  102 (165)
Q Consensus        27 ~~~~~~ad~vi~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~v  102 (165)
                      +....|.|.+++|+++.++ .+...+..++......   +++.+||+||+||..... ......   ......|++++.+
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~   80 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLT   80 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceee
Confidence            4456899999999998765 4667777766655443   789999999999964321 112222   2344568999999


Q ss_pred             cCCCCCCHHHHHHHH
Q 031132          103 SAKTAQNVEEAFIKT  117 (165)
Q Consensus       103 Sa~~~~~i~~l~~~l  117 (165)
                      |+.+++|++++...+
T Consensus        81 Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          81 SSKDQDSLADIIPHF   95 (231)
T ss_dssp             CHHHHTTCTTTGGGG
T ss_pred             ecCChhHHHHHHHhh
Confidence            999999988876654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=0.0001  Score=56.31  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=60.3

Q ss_pred             EEEEeCCCchhhh-----hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC-------
Q 031132           11 LQIWDTAGQESFR-----SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-------   78 (165)
Q Consensus        11 ~~l~Dt~G~~~~~-----~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-------   78 (165)
                      +.||||||.....     .+....+..+|.++++.|..-......+   +..+..   .++|+++|.||+|..       
T Consensus       109 ~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d~~l---~~~l~~---~~k~~~~V~nK~D~~~~~~~~~  182 (400)
T d1tq4a_         109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDI---AKAISM---MKKEFYFVRTKVDSDITNEADG  182 (400)
T ss_dssp             EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHH---HHHHHH---TTCEEEEEECCHHHHHHHHHTT
T ss_pred             EEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCHHHHHH---HHHHHH---cCCCEEEEEeCcccccchhhhc
Confidence            6799999975422     1223346678999888875433222222   233332   368999999999952       


Q ss_pred             CCCCCCHHHHH--------HHHHHcCC---eEEEecCCC--CCCHHHHHHHHHHHH
Q 031132           79 HRRAVSTEEGE--------QFAKEHGL---IFMEASAKT--AQNVEEAFIKTAATI  121 (165)
Q Consensus        79 ~~~~~~~~~~~--------~~~~~~~~---~~~~vSa~~--~~~i~~l~~~l~~~i  121 (165)
                      .......+...        ......++   +++.+|..+  ..++.++.+.+.+.+
T Consensus       183 ~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         183 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence            11112222211        11222233   377888764  458888888776654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=4.3e-05  Score=51.28  Aligned_cols=85  Identities=15%  Similarity=0.060  Sum_probs=49.5

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HHHHHHHHHHc--CCeEEEecCCCC
Q 031132           32 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEH--GLIFMEASAKTA  107 (165)
Q Consensus        32 ~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~vSa~~~  107 (165)
                      ..+.++++.+........ ...++..+..   ...++++++||.|+.......  ...........  ..+++++||++|
T Consensus        98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             TEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             heeEEEEeecccccchhH-HHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            445566666665533222 2233333332   357899999999985432111  11112222222  346899999999


Q ss_pred             CCHHHHHHHHHHH
Q 031132          108 QNVEEAFIKTAAT  120 (165)
Q Consensus       108 ~~i~~l~~~l~~~  120 (165)
                      .|++++++.|.+.
T Consensus       174 ~Gid~L~~~i~~~  186 (188)
T d1puia_         174 QGVDKLRQKLDTW  186 (188)
T ss_dssp             BSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999987654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.70  E-value=4.3e-05  Score=56.80  Aligned_cols=110  Identities=9%  Similarity=0.047  Sum_probs=63.2

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHH
Q 031132           10 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE   89 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~   89 (165)
                      .+.|.+|.|.-.-.   .....-+|.+++|..+...+...   .....+.     ...-++|.||+|+.+..........
T Consensus       145 d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ---~~k~gil-----E~aDi~vvNKaD~~~~~~~~~~~~~  213 (323)
T d2qm8a1         145 DVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQ---GIKKGIF-----ELADMIAVNKADDGDGERRASAAAS  213 (323)
T ss_dssp             CEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC---------CCTTHH-----HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhh---hhhhhHh-----hhhheeeEeccccccchHHHHHHHH
Confidence            34566666542211   22345689999999998754332   2222222     2345778899998543222111111


Q ss_pred             HHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132           90 QFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF  130 (165)
Q Consensus        90 ~~~~~----------~~~~~~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~  130 (165)
                      .+...          +.-+++.+||++|+|+++++++|.+........+.+
T Consensus       214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G~l  264 (323)
T d2qm8a1         214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEI  264 (323)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCChH
Confidence            11111          234699999999999999999998877665555443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.3e-05  Score=57.55  Aligned_cols=94  Identities=11%  Similarity=-0.013  Sum_probs=55.3

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCC--HHHHHHHHHH-------cCCeE
Q 031132           29 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKE-------HGLIF   99 (165)
Q Consensus        29 ~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-------~~~~~   99 (165)
                      +...+|.+++|.++...+...   .....+...     +-++|+||+|+.......  ..+.......       +..++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq---~~k~gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQ---GIKKGLMEV-----ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHTTCSEEEEEECC------C---CCCHHHHHH-----CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhccceEEEEecCCCchhhh---hhchhhhcc-----ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            456789999999886543332   222333323     336778999985422111  1111221111       22469


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 031132          100 MEASAKTAQNVEEAFIKTAATIYKKIQDGVF  130 (165)
Q Consensus       100 ~~vSa~~~~~i~~l~~~l~~~i~~~~~~~~~  130 (165)
                      +.+||.+|+|++++++.|.+.......++.+
T Consensus       236 ~~~SA~~g~Gi~eL~~~I~~~~~~l~~sG~l  266 (327)
T d2p67a1         236 LTCSALEKRGIDEIWHAIIDFKTALTASGRL  266 (327)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHHHHHHHTTHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHHHHHhCCHH
Confidence            9999999999999999998877665555443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.14  E-value=0.00041  Score=49.61  Aligned_cols=80  Identities=13%  Similarity=-0.012  Sum_probs=45.8

Q ss_pred             eeCCEEEEEEEEeCCCchhh-------hhhhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCeEEEE
Q 031132            3 TIDNKPIKLQIWDTAGQESF-------RSITRS--YYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLI   71 (165)
Q Consensus         3 ~i~~~~~~~~l~Dt~G~~~~-------~~~~~~--~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv   71 (165)
                      .++|.  .+.++||||..+.       ......  .....++++||++++...--......+..+...+.  .-.+++||
T Consensus        76 ~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv  153 (257)
T d1h65a_          76 SRAGF--TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA  153 (257)
T ss_dssp             EETTE--EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred             EeccE--EEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEE
Confidence            34443  5889999997431       111111  13457899999988764322222333344443332  13578999


Q ss_pred             eeCCCCCCCCCCC
Q 031132           72 GNKCDLAHRRAVS   84 (165)
Q Consensus        72 ~nK~Dl~~~~~~~   84 (165)
                      +||+|...+....
T Consensus       154 ~t~~D~~~~~~~~  166 (257)
T d1h65a_         154 LTHAQFSPPDGLP  166 (257)
T ss_dssp             EECCSCCCGGGCC
T ss_pred             EECcccCCcCCCc
Confidence            9999986544333

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.48  E-value=0.0058  Score=43.96  Aligned_cols=69  Identities=13%  Similarity=0.096  Sum_probs=44.6

Q ss_pred             EEEEEeCCCchh-------------hhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132           10 KLQIWDTAGQES-------------FRSITRSYYRGAA-GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus        10 ~~~l~Dt~G~~~-------------~~~~~~~~~~~ad-~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      .+.|+|+||...             ...+...|+...+ ++++|.+++...+..+...+...+..   ...++++|.||+
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~---~~~r~i~Vltk~  202 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITKL  202 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---TCSSEEEEEECG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc---CCCceeeEEecc
Confidence            377999999632             2355677777776 55566667665554455444444322   346899999999


Q ss_pred             CCCCCC
Q 031132           76 DLAHRR   81 (165)
Q Consensus        76 Dl~~~~   81 (165)
                      |+..+.
T Consensus       203 D~~~~~  208 (299)
T d2akab1         203 DLMDEG  208 (299)
T ss_dssp             GGSCTT
T ss_pred             ccccch
Confidence            986543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.87  E-value=0.011  Score=42.63  Aligned_cols=68  Identities=12%  Similarity=0.167  Sum_probs=42.8

Q ss_pred             EEEEEeCCCchh-------------hhhhhHhhhcCCcEEEEEE-eCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132           10 KLQIWDTAGQES-------------FRSITRSYYRGAAGALLVY-DITRRETFNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus        10 ~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~vi~v~-D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      .+.|+||||...             ...++..|+.+++.+++++ ++.....-.....+...+   ......+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            467999999632             3457788899999866665 444332222333333332   22356899999999


Q ss_pred             CCCCC
Q 031132           76 DLAHR   80 (165)
Q Consensus        76 Dl~~~   80 (165)
                      |....
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.53  E-value=0.37  Score=33.82  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=26.3

Q ss_pred             CeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecCC
Q 031132           66 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  105 (165)
Q Consensus        66 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  105 (165)
                      +|+++++|..+.........+....++...+..++.+||.
T Consensus       200 KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         200 KPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             SCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             chhhhhhccccccccccHHHHHHHHHHHhcCCeEEEeEHH
Confidence            8899999976542222112345566677778889999884

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.52  E-value=0.5  Score=33.46  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=26.4

Q ss_pred             EEEEEEeCCCchh-------hhhhhHhhhcCCcEEEEEEeCCC
Q 031132            9 IKLQIWDTAGQES-------FRSITRSYYRGAAGALLVYDITR   44 (165)
Q Consensus         9 ~~~~l~Dt~G~~~-------~~~~~~~~~~~ad~vi~v~D~~~   44 (165)
                      ..+++.|++|...       ........++.+|++++|+|+.+
T Consensus        75 ~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          75 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            4689999998642       12334455789999999999865

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.71  E-value=1.1  Score=29.67  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCCCCHHH
Q 031132            9 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAVSTEE   87 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~   87 (165)
                      +-+.++|+++....  .....+..+|.++++...+ ..++..+...+..+.+   .+.|++ +|.|+.+... ..+....
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc-chhhhHH
Confidence            45789999876543  2334466899999999874 4556666665555543   356765 7899998643 3344433


Q ss_pred             H
Q 031132           88 G   88 (165)
Q Consensus        88 ~   88 (165)
                      .
T Consensus       185 ~  185 (237)
T d1g3qa_         185 A  185 (237)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=91.30  E-value=0.18  Score=34.26  Aligned_cols=92  Identities=13%  Similarity=0.068  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCchhhhhh----hHhhh--------cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031132            9 IKLQIWDTAGQESFRSI----TRSYY--------RGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKC   75 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~~----~~~~~--------~~ad~vi~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~   75 (165)
                      +.+.|.||+|...+...    +..+.        ...+-+++|+|++... ....+...+..   .   + +--++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~---~---~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA---V---G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHH---H---C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhc---c---C-CceEEEecc
Confidence            35789999997543221    11111        2457789999988753 33333333322   2   1 334578999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 031132           76 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  113 (165)
Q Consensus        76 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~l  113 (165)
                      |-....    -.+..++...++|+.+++  +|++.+++
T Consensus       162 Det~~~----G~~l~~~~~~~~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         162 DGTAKG----GVLIPIVRTLKVPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             TSSCCC----TTHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEe--CCCChHhC
Confidence            953221    123445667789977776  35555443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=91.19  E-value=0.82  Score=30.93  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCchhhhh-h---hH---hhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031132            9 IKLQIWDTAGQESFRS-I---TR---SYYR-----GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD   76 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~-~---~~---~~~~-----~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D   76 (165)
                      +.+.|.||+|...... +   +.   ...+     ..+-+++|+|++...  +.+......+...    .+--+++||.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lIlTKlD  165 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV----GLTGITLTKLD  165 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHHS----CCCEEEEECCT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhcc----CCceEEEeecC
Confidence            3478999999643221 1   11   1122     246889999987642  2222222222222    23456789999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132           77 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  112 (165)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  112 (165)
                      -...    .-.+...+...++|+.+++  +|+++++
T Consensus       166 e~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         166 GTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            5321    2234555677899988776  5777644

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=90.40  E-value=0.43  Score=32.42  Aligned_cols=91  Identities=22%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             EEEEEeCCCchhhhhh----hHhh---hc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031132           10 KLQIWDTAGQESFRSI----TRSY---YR-----GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL   77 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~~----~~~~---~~-----~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl   77 (165)
                      .+.|.||+|...+...    +..+   .+     ..+-+++|+|++...  +.+..........    .+-=+++||.|-
T Consensus        95 d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lI~TKlDe  168 (213)
T d1vmaa2          95 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV----NVTGIILTKLDG  168 (213)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS----CCCEEEEECGGG
T ss_pred             CEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc----CCceEEEecccC
Confidence            4789999996432221    1111   11     146789999987652  3333333332222    244567899995


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132           78 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  112 (165)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  112 (165)
                      ..    ..-.+..++...++|+.+++  +|+++++
T Consensus       169 ~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         169 TA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             CS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            32    12234556777899987776  4766654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=87.05  E-value=2.5  Score=28.30  Aligned_cols=92  Identities=15%  Similarity=0.120  Sum_probs=52.7

Q ss_pred             EEEEEEeCCCchhhhh--h----hHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031132            9 IKLQIWDTAGQESFRS--I----TRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR   80 (165)
Q Consensus         9 ~~~~l~Dt~G~~~~~~--~----~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~   80 (165)
                      +.+.|+||+|...+..  .    ...+  .-..+-+++|+|++....-  +........ .  .+. --+++||.|-.  
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~--~~~~~~~~~-~--~~~-~~lI~TKlDet--  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA--YDLASKFNQ-A--SKI-GTIIITKMDGT--  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHH-H--CTT-EEEEEECTTSC--
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch--HHHHhhhhc-c--cCc-ceEEEecccCC--
Confidence            3578999999743321  1    1111  1245778899998765322  222222221 2  122 34568999953  


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 031132           81 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  112 (165)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  112 (165)
                        ...-....++...++|+.+++  +|+++++
T Consensus       167 --~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 --AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             --SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             --CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence              234455667778899977776  4766644

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=86.98  E-value=2.5  Score=28.23  Aligned_cols=84  Identities=20%  Similarity=0.101  Sum_probs=48.0

Q ss_pred             EEEEEeCCCchhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCC
Q 031132           10 KLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV   83 (165)
Q Consensus        10 ~~~l~Dt~G~~~~~~----~~~~~--~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~   83 (165)
                      .+.|+||+|......    .+..+  ..+.+-+++|.|++....-  + .....+.+..  + .-=+++||.|-..    
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~--~-~~~~~f~~~~--~-~~~~I~TKlDe~~----  163 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA--L-SVARAFDEKV--G-VTGLVLTKLDGDA----  163 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHH--H-HHHHHHHHHT--C-CCEEEEECGGGCS----
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhH--H-HHHHHHHhhC--C-CCeeEEeecCccc----
Confidence            478999999753322    11111  2356889999998765322  2 1222232221  1 2346789999422    


Q ss_pred             CHHHHHHHHHHcCCeEEEec
Q 031132           84 STEEGEQFAKEHGLIFMEAS  103 (165)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~vS  103 (165)
                      ..-.+..+....+.|+.+++
T Consensus       164 ~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             SCHHHHHHHHHHCCCEEEEC
T ss_pred             cchHHHHHHHHHCCCEEEEe
Confidence            22344556777899987775

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.89  E-value=0.41  Score=34.14  Aligned_cols=37  Identities=27%  Similarity=0.251  Sum_probs=22.3

Q ss_pred             EEEEEEEEeCCCchhh----hhhhH---hhhcCCcEEEEEEeCC
Q 031132            7 KPIKLQIWDTAGQESF----RSITR---SYYRGAAGALLVYDIT   43 (165)
Q Consensus         7 ~~~~~~l~Dt~G~~~~----~~~~~---~~~~~ad~vi~v~D~~   43 (165)
                      ....++++|+||.-..    ..+..   ..++.+|++++|+|+.
T Consensus        69 ~~~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          69 ALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             EEEEEEEEECC---------------CCCSSTTCSEEEEEEETT
T ss_pred             ccccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            4467999999996432    11222   2356899999999986

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.78  E-value=4.9  Score=26.76  Aligned_cols=94  Identities=11%  Similarity=0.041  Sum_probs=46.3

Q ss_pred             EEEEeCCCchhhhhhhHh--------hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCC
Q 031132           11 LQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA   82 (165)
Q Consensus        11 ~~l~Dt~G~~~~~~~~~~--------~~~~ad~vi~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~   82 (165)
                      ..+.++.|...-..+...        ..-..+++|.|+|+..........   ..+..+.  ..-=+|++||+|+..+  
T Consensus        92 ~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~---~~~~~Qi--~~AD~ivlNK~Dl~~~--  164 (222)
T d1nija1          92 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF---TIAQSQV--GYADRILLTKTDVAGE--  164 (222)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHC---HHHHHHH--HTCSEEEEECTTTCSC--
T ss_pred             eeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhh---HHHHHHH--HhCCcccccccccccH--
Confidence            456777776432222211        112358999999998753221111   1111111  1223567899998542  


Q ss_pred             CCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHH
Q 031132           83 VSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAF  114 (165)
Q Consensus        83 ~~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~l~  114 (165)
                        .+.........  ..++++++ .-...+..+|
T Consensus       165 --~~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         165 --AEKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             --THHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             --HHHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence              22334444443  45677655 2223455544

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=81.34  E-value=4.5  Score=25.85  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=37.1

Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Q 031132           43 TRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA  102 (165)
Q Consensus        43 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  102 (165)
                      +|..+++........+...  .+.|+|+++......+    ..+++..+++..+++++.+
T Consensus         3 sd~~~l~~~v~~~~~~l~~--AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt   56 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIAN--RDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATM   56 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHTT--CSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEE
T ss_pred             CChHHHHHHHHHHHHHHHc--CCCEEEEECcCccccc----hHHHHHHHHHhhceeEEec
Confidence            4555555554433333333  5789999999887632    5778889999999998755