Citrus Sinensis ID: 031135

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTEKPDAAS
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccccccEEEccccccccccHHHHHHHHHHccccccccccEEEEEEccEEEEEEcccEEEEccccEEEEEccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccHcccEEEEcccccccHHHHHHHHHHccccccccEEEEEEEccccEEEEcccEEEEEccccEEEEEccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MNVEKLMKMAGAvrtggkgsvrrkkkavhkttttddKRLQSTLKRigvnaipaieevnifkddvvIQFLNPKVQASIAANTwvvsgapqtkklQDILPgiinqlgpdnlDNLRKLAEQFQkqapnagtgapttqeddddevpelvaGETFEAAAEektekpdaas
Flexible Loop (DISEMBL)
mnveklmkmagavrtggkgsvrrkkkavhkttttddkrlqstlkrigvnaipaieevNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETfeaaaeektekpdaas
Low Complexity Region (SEG)
MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVagetfeaaaeektekpdaaS
Disordered region (IsUnstruct)
*****************************************TLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLG************************************************************
Disordered Region (DISOPRED)
*NVEKLMKMAGAVRTGGKGSVRR***A******TDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLD****************************DEVPELVAGETFEA*************
Disordered Region (DISEMBL)
MNVEKLMKMA**************************KRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQ*****************EVPELVAGETFE**************
Disordered Region (DISPRO)
*******KMAGAVRT*G*GS*RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQ******************VPEL***ET*EAA************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTEKPDAAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
P20290	206	Transcription factor BTF3	no	no	0.921	0.737	0.557	9e-41
Q64152	204	Transcription factor BTF3	no	no	0.921	0.745	0.557	1e-40
Q5M8V0	158	Transcription factor BTF3	no	no	0.939	0.981	0.547	3e-39
Q4KLF5	158	Transcription factor BTF3	N/A	no	0.939	0.981	0.547	3e-39
Q2KIY7	158	Transcription factor BTF3	no	no	0.927	0.968	0.532	6e-39
Q5RC59	158	Transcription factor BTF3	no	no	0.927	0.968	0.532	2e-38
Q9CQH7	158	Transcription factor BTF3	no	no	0.927	0.968	0.532	2e-38
Q96K17	158	Transcription factor BTF3	no	no	0.927	0.968	0.532	2e-38
Q6PC91	158	Transcription factor BTF3	no	no	0.927	0.968	0.538	5e-38
Q5ZJG3	158	Transcription factor BTF3	no	no	0.927	0.968	0.519	5e-37

>sp|P20290|BTF3_HUMAN Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1

 Score =  165 bits (418), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 114/156 (73%), Gaps = 4/156 (2%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct: 50  MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 109

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
            +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct: 110 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 169

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 155
            KQ+ + G     T EDDDDEVP+LV  E F+ A++
Sbjct: 170 PKQSVD-GKAPLATGEDDDDEVPDLV--ENFDEASK 202

General transcription factor. BTF3 can form a stable complex with RNA polymerase II. Required for the initiation of transcription.
Homo sapiens (taxid: 9606)

>sp|Q64152|BTF3_MOUSE Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=2 SV=3

 Score =  165 bits (418), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 114/156 (73%), Gaps = 4/156 (2%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct: 48  MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 107

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
            +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct: 108 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 167

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 155
            KQ+ + G     T EDDDDEVP+LV  E F+ A++
Sbjct: 168 PKQSVD-GKAPLATGEDDDDEVPDLV--ENFDEASK 200

General transcription factor. BTF3 can form a stable complex with RNA polymerase II. Required for the initiation of transcription.

Mus musculus (taxid: 10090)

>sp|Q5M8V0|BT3L4_XENTR Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 115/157 (73%), Gaps = 2/157 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
           KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156
            +Q  ++    P   E++DD+VPELV G   EA+  E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

Xenopus tropicalis (taxid: 8364)

>sp|Q4KLF5|BT3L4_XENLA Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 115/157 (73%), Gaps = 2/157 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
           KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156
            +Q  ++    P   E++DD+VPELV G   EA+  E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

Xenopus laevis (taxid: 8355)

>sp|Q2KIY7|BT3L4_BOVIN Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1

 Score =  159 bits (403), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 116/156 (74%), Gaps = 3/156 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
           KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 155
            +Q  ++ T  P   ++++D+VP+LV  E F+ A++
Sbjct: 121 PRQVLDSKTPKPEDIDEEEDDVPDLV--ENFDEASK 154

Bos taurus (taxid: 9913)

>sp|Q5RC59|BT3L4_PONAB Transcription factor BTF3 homolog 4 OS=Pongo abelii GN=BTF3L4 PE=2 SV=1

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 115/156 (73%), Gaps = 3/156 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
           KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 155
            +Q  ++    P   +++DD+VP+LV  E F+ A++
Sbjct: 121 PRQVLDSKAPKPEDIDEEDDDVPDLV--ENFDEASK 154

Pongo abelii (taxid: 9601)

>sp|Q9CQH7|BT3L4_MOUSE Transcription factor BTF3 homolog 4 OS=Mus musculus GN=Btf3l4 PE=2 SV=1

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 115/156 (73%), Gaps = 3/156 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
           KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 155
            +Q  ++    P   +++DD+VP+LV  E F+ A++
Sbjct: 121 PRQVLDSKAPKPEDIDEEDDDVPDLV--ENFDEASK 154

Mus musculus (taxid: 10090)

>sp|Q96K17|BT3L4_HUMAN Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 115/156 (73%), Gaps = 3/156 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
           KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 155
            +Q  ++    P   +++DD+VP+LV  E F+ A++
Sbjct: 121 PRQVLDSKAPKPEDIDEEDDDVPDLV--ENFDEASK 154

Homo sapiens (taxid: 9606)

>sp|Q6PC91|BT3L4_DANRE Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1

 Score =  156 bits (395), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 115/156 (73%), Gaps = 3/156 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
           KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 155
            +Q  +         +++DD+VP+LV  E F+ A++
Sbjct: 121 PRQVLDNKAPKAEDIDEEDDDVPDLV--ENFDEASK 154

Danio rerio (taxid: 7955)

>sp|Q5ZJG3|BT3L4_CHICK Transcription factor BTF3 homolog 4 OS=Gallus gallus GN=BTF3L4 PE=2 SV=1

 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/156 (51%), Positives = 113/156 (72%), Gaps = 3/156 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
           KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 120 QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 155
            +Q  ++        +++DD+VP+L   E F+ A++
Sbjct: 121 PRQVLDSKAPKSEDIDEEDDDVPDL--AENFDEASK 154

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
217075480	160	unknown [Medicago truncatula] gi|3884942	0.945	0.975	0.878	4e-74
217074804	159	unknown [Medicago truncatula] gi|3885185	0.945	0.981	0.878	3e-73
388507122	163	unknown [Lotus japonicus]	0.957	0.969	0.867	9e-73
388493890	170	unknown [Lotus japonicus]	0.927	0.9	0.871	2e-72
388515145	163	unknown [Lotus japonicus]	0.957	0.969	0.861	2e-72
351725517	161	uncharacterized protein LOC100500153 [Gl	0.945	0.968	0.852	5e-72
351724395	159	uncharacterized protein LOC100500678 [Gl	0.945	0.981	0.852	2e-71
297850182	164	hypothetical protein ARALYDRAFT_312752 [	0.993	1.0	0.824	2e-71
351725139	162	uncharacterized protein LOC100306292 [Gl	0.945	0.962	0.859	3e-71
164605523	164	CM0216.550.nc [Lotus japonicus]	0.963	0.969	0.857	3e-71

>gi|217075480|gb|ACJ86100.1| unknown [Medicago truncatula] gi|388494246|gb|AFK35189.1| unknown [Medicago truncatula]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/156 (87%), Positives = 148/156 (94%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKLMKMAG+VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIP IEEVNIF
Sbjct: 1   MNREKLMKMAGSVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPQIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILP II+QLGPDNL+NL+K+AEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIHQLGPDNLENLKKIAEQFQ 120

Query: 121 KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156
           KQAP AGTG+ T QE++DD+VP+LV GETFE AAEE
Sbjct: 121 KQAPEAGTGSATVQEENDDDVPDLVPGETFETAAEE 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074804|gb|ACJ85762.1| unknown [Medicago truncatula] gi|388518537|gb|AFK47330.1| unknown [Medicago truncatula]

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 137/156 (87%), Positives = 144/156 (92%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MNVEKLMKMAG+VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN IPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGSVRTGGKGTVRRKKKAVHKTATTDDKRLQSTLKRIGVNGIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFLNPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNL+NL+KLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPNIIHQLGPDNLENLKKLAEQFQ 120

Query: 121 KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156
           KQAP AG  A   QEDDDD VP+LV GETFE AAEE
Sbjct: 121 KQAPEAGADATAAQEDDDDAVPDLVPGETFETAAEE 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507122|gb|AFK41627.1| unknown [Lotus japonicus]

 Score =  277 bits (709), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 138/159 (86%), Positives = 147/159 (92%), Gaps = 1/159 (0%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKLMKMAG+VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGSVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILP II+QLGPDNL+NL+KLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQ 120

Query: 121 KQAPNAGTGAPT-TQEDDDDEVPELVAGETFEAAAEEKT 158
           KQAP AG    T  QE++DD+VPELV GETFE  AEE+T
Sbjct: 121 KQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEET 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493890|gb|AFK35011.1| unknown [Lotus japonicus]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/156 (87%), Positives = 145/156 (92%), Gaps = 3/156 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MNVE+LMKMAG+VRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVERLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFLNPKVQASIAANTWVVSG+PQTKKLQDILP II QLGPDNL+NL+KLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIQQLGPDNLENLKKLAEQFQ 120

Query: 121 KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156
           KQAP AG    T QE+DDD VP+LV GETFE AAEE
Sbjct: 121 KQAPEAGA---TAQEEDDDAVPDLVPGETFETAAEE 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515145|gb|AFK45634.1| unknown [Lotus japonicus]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/159 (86%), Positives = 147/159 (92%), Gaps = 1/159 (0%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKLMKMAG+VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGSVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILP II+QLGPDNL+NL++LAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIHQLGPDNLENLKRLAEQFQ 120

Query: 121 KQAPNAGTGAPT-TQEDDDDEVPELVAGETFEAAAEEKT 158
           KQAP AG    T  QE++DD+VPELV GETFE  AEE+T
Sbjct: 121 KQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEET 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725517|ref|NP_001237607.1| uncharacterized protein LOC100500153 [Glycine max] gi|255629476|gb|ACU15084.1| unknown [Glycine max]

 Score =  275 bits (702), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/156 (85%), Positives = 144/156 (92%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKLMKMAG+VRTGGKG+VRRKKKA HKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGSVRTGGKGTVRRKKKAAHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFLNPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNL+NL+KLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQ 120

Query: 121 KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156
           KQAP    G+ T QE++DD+VPELV G+ FE AAEE
Sbjct: 121 KQAPEGAAGSTTAQEENDDDVPELVPGQDFETAAEE 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724395|ref|NP_001237824.1| uncharacterized protein LOC100500678 [Glycine max] gi|255630915|gb|ACU15820.1| unknown [Glycine max]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/156 (85%), Positives = 144/156 (92%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+VEKL KMA +VRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDVEKLKKMASSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KD++VIQFLNPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNL+NL+KLAEQFQ
Sbjct: 61  KDEIVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPNIIHQLGPDNLENLKKLAEQFQ 120

Query: 121 KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156
           KQ P AG GA   QEDDDD VP+LV GETFE AAEE
Sbjct: 121 KQVPEAGDGATAAQEDDDDAVPDLVPGETFETAAEE 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850182|ref|XP_002892972.1| hypothetical protein ARALYDRAFT_312752 [Arabidopsis lyrata subsp. lyrata] gi|297338814|gb|EFH69231.1| hypothetical protein ARALYDRAFT_312752 [Arabidopsis lyrata subsp. lyrata]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/165 (82%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKLMKMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTEKPDAAS 165
           KQ+P  G  + T QE+DDD+VPELV GETFEAAAEEK     A+S
Sbjct: 121 KQSPGEGKASATIQEEDDDDVPELV-GETFEAAAEEKLPAAAASS 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725139|ref|NP_001236570.1| uncharacterized protein LOC100306292 [Glycine max] gi|255628123|gb|ACU14406.1| unknown [Glycine max]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 135/157 (85%), Positives = 145/157 (92%), Gaps = 1/157 (0%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKLMKMAG+VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGSVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDD VIQFLNPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNL+NL+KLAEQFQ
Sbjct: 61  KDDGVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQ 120

Query: 121 KQAPNAGTGAPTTQED-DDDEVPELVAGETFEAAAEE 156
           KQAP   TG+ T QE+ DDD+VPELV G+ FE AAEE
Sbjct: 121 KQAPEGATGSTTAQEENDDDDVPELVPGQDFETAAEE 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164605523|dbj|BAF98589.1| CM0216.550.nc [Lotus japonicus]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/161 (85%), Positives = 148/161 (91%), Gaps = 2/161 (1%)

Query: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MN EKLMKMAG+VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGSVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL-GPDNLDNLRKLAEQF 119
           KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILP II+QL GPDNL+NL+KLAEQF
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIHQLGGPDNLENLKKLAEQF 120

Query: 120 QKQAPNAGTGAPT-TQEDDDDEVPELVAGETFEAAAEEKTE 159
           QKQAP AG    T  QE++DD+VPELV GETFE  AEE+T+
Sbjct: 121 QKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEETK 161

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2197239	165	AT1G73230 "AT1G73230" [Arabido	0.878	0.878	0.863	7.9e-62
TAIR|locus:2030963	165	BTF3 "AT1G17880" [Arabidopsis	0.878	0.878	0.849	7.1e-61
UNIPROTKB|P20290	206	BTF3 "Transcription factor BTF	0.872	0.699	0.575	2.1e-38
UNIPROTKB|F2Z5H8	210	BTF3 "Uncharacterized protein"	0.872	0.685	0.575	2.1e-38
MGI|MGI:1202875	204	Btf3 "basic transcription fact	0.872	0.705	0.575	2.1e-38
RGD|1308095	162	Btf3 "basic transcription fact	0.872	0.888	0.575	2.1e-38
MGI|MGI:1915312	158	Btf3l4 "basic transcription fa	0.878	0.917	0.547	2.6e-38
ZFIN|ZDB-GENE-040426-1650	158	btf3l4 "basic transcription fa	0.872	0.911	0.578	3.4e-38
UNIPROTKB|Q56JY8	162	BTF3 "Btf3 protein" [Bos tauru	0.872	0.888	0.568	5.5e-38
UNIPROTKB|H9KYT4	156	LOC430910 "Uncharacterized pro	0.866	0.916	0.554	1e-36

TAIR|locus:2197239 AT1G73230 "AT1G73230" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 126/146 (86%), Positives = 134/146 (91%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKLMKMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct:     1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query:    61 KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
             KDDVVIQF+NPKVQASIAANTWVVSG PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct:    61 KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query:   121 KQAPNAGTGAPTTQE-DDDDEVPELV 145
             KQAP AG    T QE DDDD+VP+LV
Sbjct:   121 KQAPGAGDVPATIQEEDDDDDVPDLV 146

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009651 "response to salt stress" evidence=IEP

TAIR|locus:2030963 BTF3 "AT1G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 124/146 (84%), Positives = 133/146 (91%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKLMKMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct:     1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query:    61 KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
             KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct:    61 KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query:   121 KQAPNAGTGAPTT-QEDDDDEVPELV 145
             KQA   G  A  T QE+DDD+VPELV
Sbjct:   121 KQASGEGNAASATIQEEDDDDVPELV 146

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

UNIPROTKB|P20290 BTF3 "Transcription factor BTF3" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/146 (57%), Positives = 108/146 (73%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct:    50 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 109

Query:    61 KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
              +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct:   110 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 169

Query:   120 QKQAPNAGTGAPTTQEDDDDEVPELV 145
              KQ+ + G     T EDDDDEVP+LV
Sbjct:   170 PKQSVD-GKAPLATGEDDDDEVPDLV 194

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F2Z5H8 BTF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/146 (57%), Positives = 108/146 (73%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct:    54 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 113

Query:    61 KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
              +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct:   114 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 173

Query:   120 QKQAPNAGTGAPTTQEDDDDEVPELV 145
              KQ+ + G     T EDDDDEVP+LV
Sbjct:   174 PKQSVD-GKAPLATGEDDDDEVPDLV 198

GO:0001701 "in utero embryonic development" evidence=IEA

MGI|MGI:1202875 Btf3 "basic transcription factor 3" [Mus musculus (taxid:10090)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/146 (57%), Positives = 108/146 (73%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct:    48 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 107

Query:    61 KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
              +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct:   108 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 167

Query:   120 QKQAPNAGTGAPTTQEDDDDEVPELV 145
              KQ+ + G     T EDDDDEVP+LV
Sbjct:   168 PKQSVD-GKAPLATGEDDDDEVPDLV 192

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

RGD|1308095 Btf3 "basic transcription factor 3" [Rattus norvegicus (taxid:10116)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/146 (57%), Positives = 108/146 (73%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct:     6 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 65

Query:    61 KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
              +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct:    66 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 125

Query:   120 QKQAPNAGTGAPTTQEDDDDEVPELV 145
              KQ+ + G     T EDDDDEVP+LV
Sbjct:   126 PKQSVD-GKAPLATGEDDDDEVPDLV 150

GO:0001701 "in utero embryonic development" evidence=ISO

MGI|MGI:1915312 Btf3l4 "basic transcription factor 3-like 4" [Mus musculus (taxid:10090)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 80/146 (54%), Positives = 109/146 (74%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct:     1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query:    61 KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
             KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct:    61 KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query:   120 QKQAPNAGTGAPTTQEDDDDEVPELV 145
              +Q  ++    P   +++DD+VP+LV
Sbjct:   121 PRQVLDSKAPKPEDIDEEDDDVPDLV 146

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1650 btf3l4 "basic transcription factor 3-like 4" [Danio rerio (taxid:7955)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 85/147 (57%), Positives = 109/147 (74%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct:     1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query:    61 KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
             KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct:    61 KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query:   120 QKQA-PNAGTGAPTTQEDDDDEVPELV 145
              +Q   N    A    E+DDD VP+LV
Sbjct:   121 PRQVLDNKAPKAEDIDEEDDD-VPDLV 146

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q56JY8 BTF3 "Btf3 protein" [Bos taurus (taxid:9913)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 83/146 (56%), Positives = 108/146 (73%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct:     6 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 65

Query:    61 KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
              +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct:    66 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 125

Query:   120 QKQAPNAGTGAPTTQEDDDDEVPELV 145
              KQ+ + G     T E+DDDEVP+LV
Sbjct:   126 PKQSVD-GKAPLATGEEDDDEVPDLV 150

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|H9KYT4 LOC430910 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 81/146 (55%), Positives = 105/146 (71%)

Query:     1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
             MN EKL K+   V  GGKG+ RRKKK VH+T T D+K+LQ +LK++GVN I  IEEVN+F
Sbjct:     1 MNQEKLAKLQAEVPLGGKGTARRKKKVVHRTATADEKKLQFSLKKLGVNNISGIEEVNMF 60

Query:    61 KDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 119
              +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+  +LR+LAE  
Sbjct:    61 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSFSSLRRLAEAL 120

Query:   120 QKQAPNAGTGAPTTQEDDDDEVPELV 145
              KQ+ N    AP    DDDDEVP+LV
Sbjct:   121 PKQSVNEK--APLATGDDDDEVPDLV 144

GO:0001701 "in utero embryonic development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6FKD1	NACB_CANGA	No assigned EC number	0.3618	0.8848	0.9358	yes	no
A7F9B8	NACB_SCLS1	No assigned EC number	0.5094	0.9393	0.9748	N/A	no
Q02642	NACB1_YEAST	No assigned EC number	0.3947	0.8909	0.9363	yes	no
Q5ASI4	NACB_EMENI	No assigned EC number	0.4702	0.9212	0.9212	yes	no
Q6CR46	NACB_KLULA	No assigned EC number	0.3529	0.9212	0.9620	yes	no
A6R5Z3	NACB_AJECN	No assigned EC number	0.5126	0.9393	0.9810	N/A	no
Q6BLV1	NACB_DEBHA	No assigned EC number	0.3691	0.8484	0.9090	yes	no
Q18885	BTF3_CAEEL	No assigned EC number	0.4936	0.8909	0.9130	yes	no
Q6C2F3	NACB_YARLI	No assigned EC number	0.4039	0.8666	0.8827	yes	no
Q92371	NACB_SCHPO	No assigned EC number	0.4054	0.8545	0.9337	yes	no
P0CP08	NACB_CRYNJ	No assigned EC number	0.4137	0.9393	0.8857	yes	no
A2R091	NACB_ASPNC	No assigned EC number	0.5064	0.9333	0.9935	yes	no
Q54TR8	NACB_DICDI	No assigned EC number	0.4333	0.8060	0.9366	yes	no
Q1DI23	NACB_COCIM	No assigned EC number	0.5095	0.9272	0.9870	N/A	no
A6S6B0	NACB_BOTFB	No assigned EC number	0.5031	0.9393	0.9748	N/A	no
Q751F1	NACB_ASHGO	No assigned EC number	0.3899	0.8727	0.8944	yes	no
Q4WCX4	NACB_ASPFU	No assigned EC number	0.5142	0.8303	0.7365	yes	no
Q4KLF5	BT3L4_XENLA	No assigned EC number	0.5477	0.9393	0.9810	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_1001532	annotation not avaliable (164 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.7__123__AT4G39200.2	annotation not avaliable (107 aa)				•					0.562
	fgenesh2_kg.7__621__AT4G34670.1	annotation not avaliable (262 aa)				•			•		0.555
	fgenesh2_kg.3__456__AT3G04840.1	annotation not avaliable (262 aa)				•			•		0.550
	fgenesh2_kg.3__468__AT3G04920.1	annotation not avaliable (133 aa)				•					0.535
	fgenesh2_kg.2__971__AT1G67430.1	annotation not avaliable (175 aa)				•					0.534
	fgenesh2_kg.1__2897__AT1G27400.1	annotation not avaliable (176 aa)				•					0.532
	scaffold_602125.1	annotation not avaliable (220 aa)				•	•				0.530
	scaffold_602972.1	annotation not avaliable (133 aa)				•					0.526
	fgenesh2_kg.8__1848__AT5G59240.1	annotation not avaliable (210 aa)				•	•				0.525
	scaffold_703188.1	annotation not avaliable (105 aa)				•					0.511

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam01849	50	pfam01849, NAC, NAC domain	8e-13

>gnl|CDD|202009 pfam01849, NAC, NAC domain

 Score = 59.4 bits (145), Expect = 8e-13
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 44 KRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKK 92
          K++G+  I  +EEV I K D  V+ F NPKVQ S  +NT+VV G  + K 
Sbjct: 1  KKLGLKPIEGVEEVTIRKKDGKVLVFNNPKVQKSPGSNTYVVFGEAKEKD 50

Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG2240	162	consensus RNA polymerase II general transcription	100.0
PF01849	58	NAC: NAC domain; InterPro: IPR002715 Nascent polyp	99.84
KOG2239	209	consensus Transcription factor containing NAC and	99.39
PRK06369	115	nac nascent polypeptide-associated complex protein	99.13
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	97.74
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	96.51

>KOG2240 consensus RNA polymerase II general transcription factor BTF3 and related proteins [Transcription]

Probab=100.00  E-value=6.4e-54  Score=343.73  Aligned_cols=156  Identities=59%  Similarity=0.923  Sum_probs=143.2

Q ss_pred             CCHHHHHHHhhccccCCCCccceecccccCCCCcccHHHHHHHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecC
Q 031135            1 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAA   79 (165)
Q Consensus         1 m~~eKL~kl~~~~r~GGkGt~RRKkK~v~k~a~~dDKKlq~~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~a   79 (165)
                      |+++||++++..+|||||||+|||++++|++++.||||||+.|+||+|++|+||+||||||++ +||||++|+||+|+++
T Consensus         6 ~~~~kl~k~~a~~r~ggkGt~rrkk~~~~~~~~~ddkKlqs~lkkl~v~~i~~i~evn~~k~~g~Vihf~~~~vqasl~~   85 (162)
T KOG2240|consen    6 ENLAKLQKLQAVVRIGGKGTARRKKKVVHKTATADDKKLQSSLKKLGVNNIPGIEEVNMFKNDGTVIHFNNPKVQASLAA   85 (162)
T ss_pred             hhHHHHhhhhheeeecCCCccccccCCCCCCCCcccchhhhhhhhhccccccchhHhhhccccceeEecCCccccccccC
Confidence            467888888999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             CeEEEecccccchhhhhhhhhhhccchhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCCCChhHHhhcccc
Q 031135           80 NTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTE  159 (165)
Q Consensus        80 NTfvV~G~~~~K~lte~lP~Il~QLG~d~l~~L~~lae~~~~~~~~~~~~~~~~~~~ddddVPdLV~genFde~sk~e~~  159 (165)
                      |||+||||+++|+|+||||+||+|||++++++||+||++++.+.....+. .+....+||+||+||  |||+++++++++
T Consensus        86 nTf~ItG~~~~k~l~EmlPsilsqLg~~sl~~Lr~La~~l~~~~~~~~~~-~~~~~~~dd~~p~Lv--enf~~~~~~~~~  162 (162)
T KOG2240|consen   86 NTFTITGHAETKQLTEMLPSILSQLGPDSLTALRRLAEQLPKQDGKEGAD-AATIEDDDDDVPELV--ENFDEAAKNEAN  162 (162)
T ss_pred             CeEEEecCCcccchhhhcchhhhhcChhhHHHHHHHHHhcccccccCCCC-ccchhhcccchHHHH--HhHHHHhhhccC
Confidence            99999999999999999999999999999999999999998776555422 223345699999999  799999998764

>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation

Probab=99.84  E-value=1.8e-21  Score=131.88  Aligned_cols=57  Identities=49%  Similarity=0.750  Sum_probs=47.6

Q ss_pred             cHHHHHHHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccch
Q 031135           36 DKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKK   92 (165)
Q Consensus        36 DKKlq~~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~   92 (165)
                      |||+|.+|+|||+++|+||+||+|+++| ++|||+||+||+++++|||+|||++++++
T Consensus         1 ekk~~~~l~klgl~~i~~i~eV~i~~~dg~~~~~~~P~V~~~~~~~tyvV~G~~~~~~   58 (58)
T PF01849_consen    1 EKKLQKMLKKLGLKEIPGIEEVTIRKDDGTVFVFNNPEVQKSPGSNTYVVFGEAEEED   58 (58)
T ss_dssp             -------GHHCT-EEETTEEEEEEEETTTEEEEEESEEEEEETTCCEEEEESEEEEEE
T ss_pred             CHHHHHHHHHcCCcccCCcEEEEEEECCceEEEEcCCeEEEcCCCCEEEEEeeeEEcC
Confidence            6899999999999999999999999999 99999999999999999999999999874

The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.

>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]

Probab=99.39  E-value=1.6e-12  Score=108.06  Aligned_cols=62  Identities=19%  Similarity=0.463  Sum_probs=59.3

Q ss_pred             CcccHHHHHHHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhh
Q 031135           33 TTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQ   94 (165)
Q Consensus        33 ~~dDKKlq~~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~lt   94 (165)
                      +..+||.|.++.|||+++|+||.+|+|+|.. .+|.+++|.||.|++++||||||++...+|+
T Consensus        63 srsekKark~m~KLGlk~v~gV~RVti~ksKNilfvI~kPdVyKsp~sdtYiiFGeakiedls  125 (209)
T KOG2239|consen   63 SRSEKKARKAMLKLGLKQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIIFGEAKIEDLS  125 (209)
T ss_pred             chHHHHHHHHHHhcCCccccceeEEEEEecccEEEEecCCceeccCCCceEEEecccccchhH
Confidence            4689999999999999999999999999988 9999999999999999999999999998887

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=99.13  E-value=8.5e-11  Score=90.48  Aligned_cols=60  Identities=25%  Similarity=0.506  Sum_probs=55.9

Q ss_pred             cccHHHHHHHhhhCCc--cCCCccceeeeecCEEEEeeCCeee--eeecCCeEEEecccccchhh
Q 031135           34 TDDKRLQSTLKRIGVN--AIPAIEEVNIFKDDVVIQFLNPKVQ--ASIAANTWVVSGAPQTKKLQ   94 (165)
Q Consensus        34 ~dDKKlq~~LkKLg~~--~I~gIeEVnmfk~d~vihF~nPkVq--aS~~aNTfvV~G~~~~K~lt   94 (165)
                      -+.||++..++|||++  +| ||++|+|.+.+..|.|++|.|+  .++.++||+|||.+++.+++
T Consensus         5 ~nprk~rkmmkkmGik~e~i-~v~~V~Ir~~~~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~   68 (115)
T PRK06369          5 MNPRKMKQMMKQMGIDVEEL-DVEEVIIRLKDKEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKE   68 (115)
T ss_pred             CCHHHHHHHHHHcCCcchhc-CeEEEEEEeCCEEEEEcCCeEEEEecCCCcEEEEEeccEEeecc
Confidence            4779999999999999  99 9999999998888999999999  79999999999999998755

>TIGR00264 alpha-NAC-related protein

Probab=97.74  E-value=8.3e-05  Score=57.61  Aligned_cols=57  Identities=35%  Similarity=0.557  Sum_probs=46.0

Q ss_pred             HHHHHHHhhhCCccC-CCccceeeeecCEEEEeeCCeeee--eecCCeEEEecccccchh
Q 031135           37 KRLQSTLKRIGVNAI-PAIEEVNIFKDDVVIQFLNPKVQA--SIAANTWVVSGAPQTKKL   93 (165)
Q Consensus        37 KKlq~~LkKLg~~~I-~gIeEVnmfk~d~vihF~nPkVqa--S~~aNTfvV~G~~~~K~l   93 (165)
                      |+++..|++||++.. .+|++|.|.+.+.-|.|++|.|..  ....-||.|+|.++++++
T Consensus        12 ~~mkkmMk~MGi~~~eidV~~ViIk~~~k~ivf~~p~V~~m~~~G~~tYqI~G~~~~~~~   71 (116)
T TIGR00264        12 KQMQKMMKQMGMEMEDLDVEEVIIVFDDEEWIFENPKVQVMDILGVKTYQITGKPKKEKV   71 (116)
T ss_pred             HHHHHHHHHcCCCccccccEEEEEEeCCceEEEecCeeEEEecCCcEEEEEecccEEeec
Confidence            489999999997765 449999999988444599997754  467789999999998754

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=96.51  E-value=0.0036  Score=48.96  Aligned_cols=41  Identities=27%  Similarity=0.456  Sum_probs=36.1

Q ss_pred             cccHHHHHHHhhhC--CccCCCccceeeeecCEEEEeeCCeee
Q 031135           34 TDDKRLQSTLKRIG--VNAIPAIEEVNIFKDDVVIQFLNPKVQ   74 (165)
Q Consensus        34 ~dDKKlq~~LkKLg--~~~I~gIeEVnmfk~d~vihF~nPkVq   74 (165)
                      .+-++|+..++.||  +..|+||++|.|...|+.|.|++|.|+
T Consensus         6 mnpr~l~k~mkqmGi~~eeld~v~~V~i~~kd~e~vi~~P~V~   48 (122)
T COG1308           6 MNPRKLKKLMKQMGIDVEELDGVERVIIKLKDTEYVIENPQVT   48 (122)
T ss_pred             CCHHHHHHHHHHhCCCceeccCceEEEEEcCCceEEeeCCcEE
Confidence            35678889999997  999999999999998855999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
3lkx_A	66	Human Nac Dimerization Domain Length = 66		6e-15
3mcb_B	58	Crystal Structure Of Nac Domains Of Human Nascent P		2e-12

>pdb|3LKX|A Chain A, Human Nac Dimerization Domain Length = 66

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 48  VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGP 106
           VN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG 
Sbjct: 1   VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGA 60
Query: 107 DNLDNL 112
           D+L +L
Sbjct: 61  DSLTSL 66

>pdb|3MCB|B Chain B, Crystal Structure Of Nac Domains Of Human Nascent Polypeptide- Associated Complex (Nac) Length = 58

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 48  VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 104
           VN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQL
Sbjct: 1   VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
3lkx_A	66	Transcription factor BTF3; beta-barrel, chaperone;	2e-30
3mcb_B	58	Transcription factor BTF3; beta-barrel like struct	4e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens} Length = 66

 Score =  104 bits (261), Expect = 2e-30
 Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 48  VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGP 106
           VN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG 
Sbjct: 1   VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGA 60

Query: 107 DNLDNL 112
           D+L +L
Sbjct: 61  DSLTSL 66

>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} Length = 58

 Score = 93.3 bits (232), Expect = 4e-26
 Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 48  VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 104
           VN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQL
Sbjct: 1   VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 40/161 (24%)

Query: 33  TTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD----VVIQFL--------------NPKVQ 74
           TT  K++   L       I           D    +++++L              NP+  
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 75  ASIAA------NTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQ---FQKQAPN 125
           + IA        TW         KL  I+   +N L P      RK+ ++   F   A  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFPPSAH- 386

Query: 126 AGTGAPTTQ-----EDDDDEVPELVAGETFEAAAEEKTEKP 161
                PT        D       +V  +  + +  EK  K 
Sbjct: 387 ----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
3lkx_A	66	Transcription factor BTF3; beta-barrel, chaperone;	100.0
3mcb_B	58	Transcription factor BTF3; beta-barrel like struct	99.97
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	99.82
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	99.82
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	99.59

>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}

Probab=100.00  E-value=6.4e-35  Score=203.47  Aligned_cols=65  Identities=57%  Similarity=0.911  Sum_probs=62.3

Q ss_pred             CccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhhhhhhhhhhccchhhHHHH
Q 031135           48 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNL  112 (165)
Q Consensus        48 ~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~lte~lP~Il~QLG~d~l~~L  112 (165)
                      |++|+||+||||||+| +||||+|||||||+++|||||||++++|+|+||||+||+|||||+|++|
T Consensus         1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~ellP~Il~qlG~d~l~~l   66 (66)
T 3lkx_A            1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSL   66 (66)
T ss_dssp             CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGGGTTGGGGGCCTTHHHHC
T ss_pred             CcccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHHHChhhhhccChhhhhcC
Confidence            5799999999999999 9999999999999999999999999999999999999999999999875

>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}

Probab=99.97  E-value=4.4e-31  Score=179.99  Aligned_cols=57  Identities=58%  Similarity=0.914  Sum_probs=55.8

Q ss_pred             CccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhhhhhhhhhhcc
Q 031135           48 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL  104 (165)
Q Consensus        48 ~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~lte~lP~Il~QL  104 (165)
                      |++|+||+||||||+| +||||+|||||||+++|||+|||++++|+|+||||+||+||
T Consensus         1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e~lP~Il~ql   58 (58)
T 3mcb_B            1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL   58 (58)
T ss_dssp             CCEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGGGTTGGGGGC
T ss_pred             CcccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHHHChhhhhcC
Confidence            5799999999999999 99999999999999999999999999999999999999997

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}

Probab=99.82  E-value=1.7e-21  Score=133.87  Aligned_cols=54  Identities=22%  Similarity=0.470  Sum_probs=48.9

Q ss_pred             HHHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhh
Q 031135           41 STLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQ   94 (165)
Q Consensus        41 ~~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~lt   94 (165)
                      ++|+|||+++|+||+||||||++ .+|||++|+||+|+++|||||||+++.++++
T Consensus         6 kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~   60 (61)
T 3mce_A            6 PEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS   60 (61)
T ss_dssp             CCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC
T ss_pred             HHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCC
Confidence            46999999999999999999999 9999999999999999999999999999875

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B

Probab=99.82  E-value=2.8e-21  Score=129.90  Aligned_cols=52  Identities=23%  Similarity=0.494  Sum_probs=50.1

Q ss_pred             HHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchh
Q 031135           42 TLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKL   93 (165)
Q Consensus        42 ~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNTfvV~G~~~~K~l   93 (165)
                      +|+|||+++||||+||||||++ .+|||++|+||+|+++|||||||+++.+++
T Consensus         1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~   53 (54)
T 3mcb_A            1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDL   53 (54)
T ss_dssp             CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEEC
T ss_pred             CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccC
Confidence            4899999999999999999999 999999999999999999999999999886

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=99.59  E-value=4.5e-16  Score=116.01  Aligned_cols=53  Identities=30%  Similarity=0.473  Sum_probs=43.0

Q ss_pred             HHHhhhCC--ccCCCccceeeeecCEEEEeeCCeeee--eecCCeEEEecccccchh
Q 031135           41 STLKRIGV--NAIPAIEEVNIFKDDVVIQFLNPKVQA--SIAANTWVVSGAPQTKKL   93 (165)
Q Consensus        41 ~~LkKLg~--~~I~gIeEVnmfk~d~vihF~nPkVqa--S~~aNTfvV~G~~~~K~l   93 (165)
                      .+|+|||+  ++|+||+||+||++|.+|||++|+||+  |+++|||+|||+++++++
T Consensus         2 k~lkKLGl~~~~I~gV~eV~i~k~d~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~   58 (102)
T 1tr8_A            2 SHMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSL   58 (102)
T ss_dssp             --------CCEEECCCCEEEEECSSEEEEEESCEEEEEEETTEEEEEEESCEEEEEE
T ss_pred             chHHHcCCCceeCCCcEEEEEEeCCEEEEECCCEEEEEcCCCCcEEEEEcCceeecc
Confidence            35999999  899999999999999999999999997  899999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00