Citrus Sinensis ID: 031145

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQE
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEHHHHHHHHcccccccEcccccccEEEEEEcccccccccccccccEEEEEcccccccccccccccccccEEEcccccEEEEEEEHHEccHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHccc
Coil and Loop (DISEMBL)
MQTLTLTRATNlfsqhqddrylglsnhclcflsvhpaspppllaskRHRLKLAFVAKaadstqpssattsadktlvpddeftLAKVSFGVIGLGLGISLlsygfgayfsifpgsewsALMLTYGFPLAVIGMALKyaelkpvpcltysdaqslretcatpilkqe
Flexible Loop (DISEMBL)
MQTLTLTratnlfsqHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVakaadstqpssattsadktlvpDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQE
Low Complexity Region (SEG)
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKvsfgviglglgisllsygfgAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQE
Disordered region (IsUnstruct)
**********NLFSQHQDDRYLGLSNHCLCFLSVHP************RLKLAFV*********************PDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLR***********
Disordered Region (DISOPRED)
******TRATNLFSQHQDDRYLGLSNHCLCF*************************************************FTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQ**************
Disordered Region (DISEMBL)
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAK***************KTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQE
Disordered Region (DISPRO)
**TLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAK***************KTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPI****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q55403	184	Thylakoid membrane protei	N/A	no	0.466	0.418	0.390	0.0002

>sp|Q55403|Y575_SYNY3 Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0575 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 83  LAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLT---YGFPLAVIGMALKYAEL 139
           L K+S   +GL +G  L   GF AY       +++ L L    YG PL + G+ALK AEL
Sbjct: 2   LPKISLAAVGLTVGGILTITGFVAY-----ALDYATLNLAGFFYGIPLVLGGLALKAAEL 56

Query: 140 KPVPCL--TYSDAQSLRETCATPILKQ 164
           KP+P    T     +LR   ATP   Q
Sbjct: 57  KPIPFSQPTSEKIIALRNQLATPTQNQ 83

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
255579087	275	conserved hypothetical protein [Ricinus	0.890	0.534	0.688	1e-54
449447484	294	PREDICTED: thylakoid membrane protein sl	0.739	0.414	0.778	2e-49
449481443	294	PREDICTED: thylakoid membrane protein sl	0.739	0.414	0.778	3e-49
224077518	225	predicted protein [Populus trichocarpa]	0.709	0.52	0.805	3e-49
297801752	287	hypothetical protein ARALYDRAFT_494103 [	0.721	0.414	0.781	2e-47
30693285	286	protein acclimation of photosynthesis to	0.915	0.527	0.626	3e-46
26450956	286	unknown protein [Arabidopsis thaliana]	0.721	0.416	0.764	3e-46
334188069	431	protein acclimation of photosynthesis to	0.721	0.276	0.764	5e-46
25082754	286	Unknown protein [Arabidopsis thaliana]	0.721	0.416	0.756	7e-46
242081259	259	hypothetical protein SORBIDRAFT_07g01517	0.836	0.532	0.619	4e-43

>gi|255579087|ref|XP_002530392.1| conserved hypothetical protein [Ricinus communis] gi|223530078|gb|EEF31998.1| conserved hypothetical protein [Ricinus communis]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 136/170 (80%), Gaps = 23/170 (13%)

Query: 5   TLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLAS---------KRHR-LKLAF 54
            +++AT +F+ H +DR+         FLSV+P SPP LL S         KRHR +KL F
Sbjct: 8   VVSKAT-VFNSH-NDRF---------FLSVYPHSPPLLLQSPRLDSRLCAKRHRNVKLVF 56

Query: 55  VAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGS 114
           VAKAADSTQPS+A+T+  K +V D+EF+LAKVSFGVIGLG+GISLLSYGFGAYF+I PGS
Sbjct: 57  VAKAADSTQPSTASTA--KAIVSDEEFSLAKVSFGVIGLGVGISLLSYGFGAYFNILPGS 114

Query: 115 EWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQ 164
           EWSA+MLTYGFPLA+IGMALKYAELKPVPCLTYSDAQ LRET ATPILKQ
Sbjct: 115 EWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYSDAQMLRETSATPILKQ 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447484|ref|XP_004141498.1| PREDICTED: thylakoid membrane protein slr0575-like [Cucumis sativus]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/122 (77%), Positives = 106/122 (86%)

Query: 43  LASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSY 102
           L  K HRL  +F  +AADSTQPS+ + S  K +V DDEF+LAKVSFGVIGLG+G+SLLSY
Sbjct: 63  LLHKPHRLAFSFSTRAADSTQPSAVSASPGKAVVTDDEFSLAKVSFGVIGLGVGVSLLSY 122

Query: 103 GFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPIL 162
           GFGAYF+I PGSEWSA+MLTYGFPLA+IGMALKYAELKPVPCLTY DAQ LRETCATPIL
Sbjct: 123 GFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYLDAQKLRETCATPIL 182

Query: 163 KQ 164
           KQ
Sbjct: 183 KQ 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481443|ref|XP_004156184.1| PREDICTED: thylakoid membrane protein slr0575-like [Cucumis sativus]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/122 (77%), Positives = 106/122 (86%)

Query: 43  LASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSY 102
           L  K HRL  +F  +AADSTQPS+ + S  K +V DDEF+LAKVSFGVIGLG+G+SLLSY
Sbjct: 63  LLHKPHRLPFSFSTRAADSTQPSAVSASPGKAVVTDDEFSLAKVSFGVIGLGVGVSLLSY 122

Query: 103 GFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPIL 162
           GFGAYF+I PGSEWSA+MLTYGFPLA+IGMALKYAELKPVPCLTY DAQ LRETCATPIL
Sbjct: 123 GFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYLDAQKLRETCATPIL 182

Query: 163 KQ 164
           KQ
Sbjct: 183 KQ 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077518|ref|XP_002305283.1| predicted protein [Populus trichocarpa] gi|222848247|gb|EEE85794.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 107/118 (90%), Gaps = 1/118 (0%)

Query: 48  HRLKLAFVAKAADSTQPS-SATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGA 106
           HR+KL F+ KAADS+Q S S+T +A KT++ DDEF+LAKVSFGVIGLG GISLLSYGFGA
Sbjct: 6   HRVKLVFLTKAADSSQASPSSTATASKTIITDDEFSLAKVSFGVIGLGFGISLLSYGFGA 65

Query: 107 YFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQ 164
           YF+I PGSEWSA+MLTYGFPLA+IGMALKYAELKPVPCLTYSDA+ LRE CATPILKQ
Sbjct: 66  YFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYSDAEMLREKCATPILKQ 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801752|ref|XP_002868760.1| hypothetical protein ARALYDRAFT_494103 [Arabidopsis lyrata subsp. lyrata] gi|297314596|gb|EFH45019.1| hypothetical protein ARALYDRAFT_494103 [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 105/119 (88%)

Query: 46  KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFG 105
           KR  LKL F+ +AADST  S +  S D+TL+PDDEFTLAK+SFGVIGLGLG+SLLSYGFG
Sbjct: 55  KREILKLDFITRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFG 114

Query: 106 AYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQ 164
           AYF+I PGSEWSA+MLTYGFPLA+IGMALKYAELKPVPCL+YSDA  LRE+CATPIL Q
Sbjct: 115 AYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQ 173

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693285|ref|NP_198682.3| protein acclimation of photosynthesis to environment [Arabidopsis thaliana] gi|87116662|gb|ABD19695.1| At5g38660 [Arabidopsis thaliana] gi|332006962|gb|AED94345.1| protein acclimation of photosynthesis to environment [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 119/166 (71%), Gaps = 15/166 (9%)

Query: 10  TNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLAS-----------KRHRLKLAFVAKA 58
           T LFS     R L L       LSV  +S P L+             KR  LKL  V +A
Sbjct: 11  TVLFSS----RRLDLCGRRHENLSVVSSSQPSLMPKQRWLYIPETRLKREVLKLDVVGRA 66

Query: 59  ADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSA 118
           ADST  S +  S D+TL+PDDEFTLAK+SFGVIGLGLG+SLLSYGFGAYF+I PG+EWSA
Sbjct: 67  ADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFGAYFTILPGTEWSA 126

Query: 119 LMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQ 164
           +MLTYGFPL++IGMALKYAELKPVPCL+YSDA  LRE+CATPIL Q
Sbjct: 127 IMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQ 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450956|dbj|BAC42585.1| unknown protein [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 104/119 (87%)

Query: 46  KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFG 105
           KR  LKL  V +AADST  S +  S D+TL+PDDEFTLAK+SFGVIGLGLG+SLLSYGFG
Sbjct: 54  KREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFG 113

Query: 106 AYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQ 164
           AYF+I PG+EWSA+MLTYGFPL++IGMALKYAELKPVPCL+YSDA  LRE+CATPIL Q
Sbjct: 114 AYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQ 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188069|ref|NP_001190435.1| protein acclimation of photosynthesis to environment [Arabidopsis thaliana] gi|332006963|gb|AED94346.1| protein acclimation of photosynthesis to environment [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 104/119 (87%)

Query: 46  KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFG 105
           KR  LKL  V +AADST  S +  S D+TL+PDDEFTLAK+SFGVIGLGLG+SLLSYGFG
Sbjct: 54  KREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFG 113

Query: 106 AYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQ 164
           AYF+I PG+EWSA+MLTYGFPL++IGMALKYAELKPVPCL+YSDA  LRE+CATPIL Q
Sbjct: 114 AYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQ 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25082754|gb|AAN71998.1| Unknown protein [Arabidopsis thaliana]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 103/119 (86%)

Query: 46  KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFG 105
           KR  LKL  V +A DST  S +  S D+TL+PDDEFTLAK+SFGVIGLGLG+SLLSYGFG
Sbjct: 54  KREVLKLDVVGRAVDSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFG 113

Query: 106 AYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQ 164
           AYF+I PG+EWSA+MLTYGFPL++IGMALKYAELKPVPCL+YSDA  LRE+CATPIL Q
Sbjct: 114 AYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQ 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242081259|ref|XP_002445398.1| hypothetical protein SORBIDRAFT_07g015170 [Sorghum bicolor] gi|241941748|gb|EES14893.1| hypothetical protein SORBIDRAFT_07g015170 [Sorghum bicolor]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 111/147 (75%), Gaps = 9/147 (6%)

Query: 27  HCLCFLSVHPASPPPL---------LASKRHRLKLAFVAKAADSTQPSSATTSADKTLVP 77
           H +  L+V PA   P          L S+R  L +A V  A  S+ P+   ++A K +VP
Sbjct: 8   HAVRALAVLPAPASPRRRTSHVSLSLPSRRPGLAVAPVRAAESSSPPAVPASAAGKAVVP 67

Query: 78  DDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYA 137
           DDEF+LAKVSFGVIGLG+G+SLLSYGFG+YF++ PGSEWSAL+LTYGFPL +IGMALKYA
Sbjct: 68  DDEFSLAKVSFGVIGLGVGLSLLSYGFGSYFNLLPGSEWSALLLTYGFPLTIIGMALKYA 127

Query: 138 ELKPVPCLTYSDAQSLRETCATPILKQ 164
           ELKPVPC+TY+DA +LRE CATPILKQ
Sbjct: 128 ELKPVPCITYADAFALREKCATPILKQ 154

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2159888	286	APE1 "AT5G38660" [Arabidopsis	0.721	0.416	0.613	4.6e-34

TAIR|locus:2159888 APE1 "AT5G38660" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 73/119 (61%), Positives = 84/119 (70%)

Query:    46 KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKXXXXXXXXXXXXXXXXXXXX 105
             KR  LKL  V +AADST  S +  S D+TL+PDDEFTLAK                    
Sbjct:    54 KREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFG 113

Query:   106 AYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQ 164
             AYF+I PG+EWSA+MLTYGFPL++IGMALKYAELKPVPCL+YSDA  LRE+CATPIL Q
Sbjct:   114 AYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQ 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       145   0.00071  103 3  11 22  0.43    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.66u 0.18s 13.84t   Elapsed:  00:00:01
  Total cpu time:  13.66u 0.18s 13.84t   Elapsed:  00:00:01
  Start:  Fri May 10 13:14:57 2013   End:  Fri May 10 13:14:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IV.4064.1	hypothetical protein (225 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.566
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.564
	eugene3.00160848	hypothetical protein (215 aa)			•	•					0.557
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.551
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)			•	•					0.551
	gw1.V.3086.1	hypothetical protein (287 aa)			•	•					0.547
	estExt_fgenesh4_pg.C_LG_X1887	hypothetical protein (235 aa)			•	•					0.543
	gw1.XIV.1833.1	SubName- Full=Putative uncharacterized protein; (199 aa)			•	•					0.532
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)			•	•					0.529
	estExt_Genewise1_v1.C_LG_X2323	hypothetical protein (243 aa)			•	•					0.526

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam11016	146	pfam11016, DUF2854, Protein of unknown function (D	2e-26

>gnl|CDD|192697 pfam11016, DUF2854, Protein of unknown function (DUF2854)

 Score = 97.0 bits (242), Expect = 2e-26
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 102 YGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVP--CLTYSDAQSLRETCAT 159
            GF AYF+   G+  S     YG P+ + G+ALK +ELKPVP  C   ++A +LRE  AT
Sbjct: 1   VGFVAYFT--DGANLSLPGFFYGIPILLGGLALKSSELKPVPVRCTPSAEALALREKQAT 58

Query: 160 PILKQ 164
           PIL Q
Sbjct: 59  PILNQ 63

This family of proteins has no known function. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PF11016	147	DUF2854: Protein of unknown function (DUF2854); In	99.94

>PF11016 DUF2854: Protein of unknown function (DUF2854); InterPro: IPR021275 This family of proteins has no known function

Probab=99.94  E-value=2e-28  Score=195.26  Aligned_cols=61  Identities=51%  Similarity=0.745  Sum_probs=58.2

Q ss_pred             hhhhhhhccCCCCcchhhhhhhhhhHHHHHhhhhccccCCCC--CCCchHHHHHHhhcCCccccc
Q 031145          102 YGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVP--CLTYSDAQSLRETCATPILKQ  164 (165)
Q Consensus       102 vGf~AYft~~p~anLSl~gfFYGiPIlLgGLALK~AELkPvp--~~T~~~alalRe~qAT~~q~Q  164 (165)
                      |||+|||+++++  ||++||||||||+|||||||||||||||  |.|+++++++||+|||+||+|
T Consensus         1 ~Gf~aY~~~~a~--lsl~~ffYGiPilLgGlALK~aEL~Pvp~~~~~~~~~~~lRe~qat~~~~q   63 (147)
T PF11016_consen    1 IGFVAYFTDNAN--LSLPGFFYGIPILLGGLALKYAELKPVPFSCTTSPEALALREQQATPTQNQ   63 (147)
T ss_pred             CceeEEecCCCc--eeeehHHhhhHHHHHHHHHHHhcCCCCCcccCCHHHHHHHHHhcCCHHHHH
Confidence            699999998555  9999999999999999999999999999  889999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00