Citrus Sinensis ID: 031166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEccccccccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHcHccccccccccccEEEEEccccEEEEEEEEEEEEEEEcccEEEEEEcccccccccccccHHHHHHHHHccHHHHHEHEHHEccccEEEEEEcccccEccEEEEcccccEEEEEccccccccccccccHHccccc
Coil and Loop (DISEMBL)
mslapsvtrlhspflccplnklsssattvslsqrnqrssapypciraeldqnTVVAISVGLVSVAVGIGIPIfyetqidnaydfpifgagqarkysamlplqwlrcscrfcmgtgsvtvelggderefskcincdgvgsltcttcqgtgiqpryldrrefkddd
Flexible Loop (DISEMBL)
mslapsvtrlhspflcCPLNKLSSSATtvslsqrnqrssapyPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKcincdgvgsltcttcqgtgiqpryldrrefkddd
Low Complexity Region (SEG)
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Disordered region (IsUnstruct)
**********HSPFLCCPLN*********************YPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYL*********
Disordered Region (DISOPRED)
**********HSPFLCCPLNKL***************************DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFP*************LPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYL*********
Disordered Region (DISEMBL)
MSLAPSVTRLHSPFLCCPLNKLS****************APYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Disordered Region (DISPRO)
***************************************APYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRRE*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q8GSJ6	154	Protein disulfide-isomera	yes	no	0.865	0.922	0.609	5e-48

>sp|Q8GSJ6|LQY1_ARATH Protein disulfide-isomerase LQY1 OS=Arabidopsis thaliana GN=LQY1 PE=1 SV=1

 Score =  189 bits (481), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 116/169 (68%), Gaps = 27/169 (15%)

Query: 4   APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
           APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct: 5   APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query: 63  SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTG 115
           SVA+GIGIP+FYETQIDNA         FP  G G  +              CR C+G+G
Sbjct: 60  SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQK--------------CRLCVGSG 105

Query: 116 SVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           +VTVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct: 106 NVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154

Protein disulfide-isomerase probably involved in maintaining photosystem II (PSII) activity under high light by regulating repair and reassembly of PSII complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
255538908	156	conserved hypothetical protein [Ricinus	0.902	0.948	0.674	1e-55
224062017	159	predicted protein [Populus trichocarpa]	0.914	0.943	0.635	1e-52
449437216	157	PREDICTED: protein disulfide-isomerase L	0.908	0.949	0.645	1e-52
118489193	159	unknown [Populus trichocarpa x Populus d	0.914	0.943	0.630	2e-51
351727697	157	uncharacterized protein LOC100305711 [Gl	0.871	0.910	0.635	3e-48
15222330	154	DnaJ/Hsp40 cysteine-rich domain-containi	0.865	0.922	0.609	3e-46
224085841	175	predicted protein [Populus trichocarpa]	0.878	0.822	0.613	3e-46
388492084	156	unknown [Lotus japonicus]	0.878	0.923	0.585	1e-45
357438369	157	hypothetical protein MTR_1g024840 [Medic	0.884	0.923	0.580	3e-43
9369362	199	F10A5.12 [Arabidopsis thaliana]	0.829	0.683	0.598	1e-42

>gi|255538908|ref|XP_002510519.1| conserved hypothetical protein [Ricinus communis] gi|223551220|gb|EEF52706.1| conserved hypothetical protein [Ricinus communis]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 116/172 (67%), Positives = 130/172 (75%), Gaps = 24/172 (13%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRA-ELDQNTVVAISV 59
           M LAPS+ RLHSPFLCCPL   + +A+  SL  RNQRSS+ YPCIRA +LDQNTVVAISV
Sbjct: 1   MPLAPSIPRLHSPFLCCPLKTSTLTASCKSL--RNQRSSSSYPCIRAIDLDQNTVVAISV 58

Query: 60  GLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCM 112
           G+VS+A+GIGIP+FYETQIDNA         FP  G+G  R              CRFC 
Sbjct: 59  GVVSIAIGIGIPVFYETQIDNAAKRENTQPCFPCNGSGAQR--------------CRFCT 104

Query: 113 GTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           GTGSVTVELGG+E+E S+CINCDG GSLTCTTCQGTGIQPRYLDRREFKDDD
Sbjct: 105 GTGSVTVELGGEEKEVSRCINCDGAGSLTCTTCQGTGIQPRYLDRREFKDDD 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062017|ref|XP_002300713.1| predicted protein [Populus trichocarpa] gi|222842439|gb|EEE79986.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 131/173 (75%), Gaps = 23/173 (13%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRN-QRSSAPYPCIRA-ELDQNTVVAIS 58
           M +APS+ RLHSPFLCCPLN +SSS ++   ++ + QRS   YPCIRA +LDQNT+VAIS
Sbjct: 1   MPVAPSIPRLHSPFLCCPLNNISSSLSSFKSARHHPQRSPVSYPCIRAIDLDQNTIVAIS 60

Query: 59  VGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFC 111
           VG+VS+A GIGIP+FYE+QIDNA         FP  G+G  +              CRFC
Sbjct: 61  VGVVSIAAGIGIPVFYESQIDNAAKRDNTQPCFPCSGSGAQK--------------CRFC 106

Query: 112 MGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           +GTGSVTVELGGDE+E S+CINCDG+GSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 107 LGTGSVTVELGGDEKEVSRCINCDGIGSLTCTTCQGSGIQPRYLDRREFKDDD 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437216|ref|XP_004136388.1| PREDICTED: protein disulfide-isomerase LQY1-like [Cucumis sativus] gi|449505746|ref|XP_004162556.1| PREDICTED: protein disulfide-isomerase LQY1-like [Cucumis sativus]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 130/172 (75%), Gaps = 23/172 (13%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRA-ELDQNTVVAISV 59
           M++APS++RLHSPFL CPL    S++ +V+ S  NQRS   YP IRA +LDQNTVVA+SV
Sbjct: 1   MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSG-NQRSPPSYPRIRAIDLDQNTVVALSV 59

Query: 60  GLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCM 112
           GLVSVA+GIGIP+FYETQIDNA         FP  G+G  R              CRFCM
Sbjct: 60  GLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR--------------CRFCM 105

Query: 113 GTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           GTG+VTVELGGD++E S+CINCDGVG+LTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 106 GTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489193|gb|ABK96403.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/173 (63%), Positives = 130/173 (75%), Gaps = 23/173 (13%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRN-QRSSAPYPCIRA-ELDQNTVVAIS 58
           M +APS+ RLHSPFL CPLN +SSS ++   ++ + QRS   YPCIRA +LDQNT+VAIS
Sbjct: 1   MPVAPSIPRLHSPFLRCPLNNISSSLSSFKSARHHPQRSPVSYPCIRAIDLDQNTIVAIS 60

Query: 59  VGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFC 111
           VG+VS+A GIGIP+FYE+QIDNA         FP  G+G  +              CRFC
Sbjct: 61  VGVVSIAAGIGIPVFYESQIDNAAKRDNTQPCFPCSGSGAQK--------------CRFC 106

Query: 112 MGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           +GTGSVTVELGGDE+E S+CINCDG+GSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 107 LGTGSVTVELGGDEKEVSRCINCDGIGSLTCTTCQGSGIQPRYLDRREFKDDD 159

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727697|ref|NP_001235634.1| uncharacterized protein LOC100305711 [Glycine max] gi|255626385|gb|ACU13537.1| unknown [Glycine max]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 126/173 (72%), Gaps = 30/173 (17%)

Query: 3   LAPSVT--RLHSPFLCCPL-NKLSSSATTVSLSQRNQRSSAPYPCIRA-ELDQNTVVAIS 58
           L+PS++  +LHS FLCCPL +KLSSSAT      R Q+    YP IRA +LDQNTVVAIS
Sbjct: 4   LSPSLSLPKLHSSFLCCPLKSKLSSSAT-----NRIQQKPTSYPRIRALDLDQNTVVAIS 58

Query: 59  VGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFC 111
           VGLVSVAVGIGIP+FYETQIDNA         FP  G+G  +              CRFC
Sbjct: 59  VGLVSVAVGIGIPVFYETQIDNAAKRDNTQPCFPCNGSGSQK--------------CRFC 104

Query: 112 MGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           +G+G+VTVELGG E+E S+CINCD VGSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 105 LGSGNVTVELGGGEKEVSRCINCDAVGSLTCTTCQGSGIQPRYLDRREFKDDD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222330|ref|NP_177698.1| DnaJ/Hsp40 cysteine-rich domain-containing protein [Arabidopsis thaliana] gi|75150317|sp|Q8GSJ6.1|LQY1_ARATH RecName: Full=Protein disulfide-isomerase LQY1; AltName: Full=Protein LOW QUANTUM YIELD OF PHOTOSYSTEM II 1; Flags: Precursor gi|26450801|dbj|BAC42509.1| unknown protein [Arabidopsis thaliana] gi|27311545|gb|AAO00738.1| unknown protein [Arabidopsis thaliana] gi|30102874|gb|AAP21355.1| At1g75690 [Arabidopsis thaliana] gi|332197625|gb|AEE35746.1| DnaJ/Hsp40 cysteine-rich domain-containing protein [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 116/169 (68%), Gaps = 27/169 (15%)

Query: 4   APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
           APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct: 5   APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query: 63  SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTG 115
           SVA+GIGIP+FYETQIDNA         FP  G G  +              CR C+G+G
Sbjct: 60  SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQK--------------CRLCVGSG 105

Query: 116 SVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           +VTVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct: 106 NVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085841|ref|XP_002307712.1| predicted protein [Populus trichocarpa] gi|222857161|gb|EEE94708.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 123/168 (73%), Gaps = 24/168 (14%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRN--QRSSAPYPCIRA-ELDQNTVVAI 57
           M +APS+ RLHSPFLCC L ++SSS+ +   S RN  QRS   +PCIRA +LDQNT+VAI
Sbjct: 1   MPVAPSIPRLHSPFLCCHLQEISSSSLSSFKSPRNNHQRSPVSHPCIRAVDLDQNTIVAI 60

Query: 58  SVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRF 110
           SVG VS+AVGIGIP+FYE+QIDNA         FP  G+G  +              CRF
Sbjct: 61  SVGAVSIAVGIGIPVFYESQIDNAAKRENTQPCFPCSGSGAQK--------------CRF 106

Query: 111 CMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRR 158
           C+GTGSVT+ELGGD++E S CINC+GVGSLTCTTCQG+GIQPRYLDRR
Sbjct: 107 CLGTGSVTLELGGDDKEVSPCINCEGVGSLTCTTCQGSGIQPRYLDRR 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492084|gb|AFK34108.1| unknown [Lotus japonicus]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/176 (58%), Positives = 121/176 (68%), Gaps = 32/176 (18%)

Query: 1   MSLAPSVT--RLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAP--YPCIRA-ELDQNTVV 55
           M+LAPS++    HS FLCCPL +        S S RN+    P  YP IRA E DQNTV+
Sbjct: 1   MTLAPSLSLPHFHSSFLCCPLKQ------PFSPSSRNRIQPKPTSYPRIRALEFDQNTVI 54

Query: 56  AISVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSC 108
           AI+VG+ SVA+GIGIP+FYE+QIDNA         FP  G+G  +              C
Sbjct: 55  AITVGVASVAIGIGIPVFYESQIDNAAKRDNTQPCFPCSGSGAQK--------------C 100

Query: 109 RFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           RFC+GTG+VTVELGGDE+E S+CINCDG GSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 101 RFCLGTGNVTVELGGDEKEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438369|ref|XP_003589460.1| hypothetical protein MTR_1g024840 [Medicago truncatula] gi|355478508|gb|AES59711.1| hypothetical protein MTR_1g024840 [Medicago truncatula]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 119/174 (68%), Gaps = 29/174 (16%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAP--YPCIRA-ELDQNTVVAI 57
           +S + S+ +LHS FL  PL  LS++        RN+    P  YP IRA ELDQNTVVAI
Sbjct: 3   ISCSLSLPQLHSSFLSSPLKSLSTTPLA-----RNKFQPKPTFYPRIRALELDQNTVVAI 57

Query: 58  SVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRF 110
           +VG++SVAVGIGIP+FYE+QIDNA         FP  G+G  +              CRF
Sbjct: 58  TVGVLSVAVGIGIPVFYESQIDNAAKRDNTQPCFPCNGSGAQK--------------CRF 103

Query: 111 CMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
           C+GTG+VTVELGG E E S+CINCDG GSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 104 CLGTGNVTVELGGAETEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9369362|gb|AAF87111.1|AC006434_7 F10A5.12 [Arabidopsis thaliana]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 109/162 (67%), Gaps = 26/162 (16%)

Query: 4   APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
           APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct: 5   APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query: 63  SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTG 115
           SVA+GIGIP+FYETQIDNA         FP  G G   K             CR C+G+G
Sbjct: 60  SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAPEK-------------CRLCVGSG 106

Query: 116 SVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDR 157
           +VTVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDR
Sbjct: 107 NVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDR 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2005585	154	LQY1 "LOW QUANTUM YIELD OF PHO	0.865	0.922	0.621	2.7e-45

TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 105/169 (62%), Positives = 118/169 (69%)

Query:     4 APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
             APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct:     5 APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query:    63 SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTG 115
             SVA+GIGIP+FYETQIDNA         FP  G G A+K             CR C+G+G
Sbjct:    60 SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTG-AQK-------------CRLCVGSG 105

Query:   116 SVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
             +VTVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct:   106 NVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       164   0.00088  107 3  11 22  0.49    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.42u 0.08s 16.50t   Elapsed:  00:00:01
  Total cpu time:  16.42u 0.08s 16.50t   Elapsed:  00:00:01
  Start:  Fri May 10 14:12:19 2013   End:  Fri May 10 14:12:20 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GSJ6	LQY1_ARATH	5, ., 3, ., 4, ., 1	0.6094	0.8658	0.9220	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II0219 hypothetical protein (159 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
PLN03165	111	PLN03165, PLN03165, chaperone protein dnaJ-related	2e-57
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional

 Score =  174 bits (443), Expect = 2e-57
 Identities = 82/125 (65%), Positives = 92/125 (73%), Gaps = 21/125 (16%)

Query: 47  AELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAML 99
            +LDQNT+VAISVG+VS+AVGIGIP+FYETQIDNA         FP  G G         
Sbjct: 1   VDLDQNTIVAISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQV------ 54

Query: 100 PLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRRE 159
                   CRFC+G+G+VTVELGG E+E SKCINCDG GSLTCTTCQG+GIQPRYLDRRE
Sbjct: 55  --------CRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRRE 106

Query: 160 FKDDD 164
           FKDDD
Sbjct: 107 FKDDD 111

Length = 111

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 107 SCRFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 149
           +C  C G+G V+VE     G       C +C+G G      C TC G G
Sbjct: 162 TCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKG 210

Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.95
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.84
PRK14282	369	chaperone protein DnaJ; Provisional	99.69
PRK14298	377	chaperone protein DnaJ; Provisional	99.69
PRK14279	392	chaperone protein DnaJ; Provisional	99.69
PRK14278	378	chaperone protein DnaJ; Provisional	99.69
PRK14284	391	chaperone protein DnaJ; Provisional	99.69
PRK14276	380	chaperone protein DnaJ; Provisional	99.68
PRK14295	389	chaperone protein DnaJ; Provisional	99.68
PRK14286	372	chaperone protein DnaJ; Provisional	99.68
PRK14280	376	chaperone protein DnaJ; Provisional	99.68
PRK14285	365	chaperone protein DnaJ; Provisional	99.67
PRK14296	372	chaperone protein DnaJ; Provisional	99.67
PRK14301	373	chaperone protein DnaJ; Provisional	99.67
PRK14287	371	chaperone protein DnaJ; Provisional	99.66
PRK10767	371	chaperone protein DnaJ; Provisional	99.66
PRK14297	380	chaperone protein DnaJ; Provisional	99.66
PRK14281	397	chaperone protein DnaJ; Provisional	99.65
PRK14288	369	chaperone protein DnaJ; Provisional	99.65
PRK14300	372	chaperone protein DnaJ; Provisional	99.65
PRK14277	386	chaperone protein DnaJ; Provisional	99.64
PRK14291	382	chaperone protein DnaJ; Provisional	99.64
PRK14294	366	chaperone protein DnaJ; Provisional	99.64
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.64
PRK14289	386	chaperone protein DnaJ; Provisional	99.6
PRK14290	365	chaperone protein DnaJ; Provisional	99.58
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.58
PRK14283	378	chaperone protein DnaJ; Provisional	99.57
PRK14293	374	chaperone protein DnaJ; Provisional	99.57
PRK14292	371	chaperone protein DnaJ; Provisional	99.57
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.45
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.08
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	98.7
KOG2813	406	consensus Predicted molecular chaperone, contains	98.19
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	98.13
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.92
KOG2813	406	consensus Predicted molecular chaperone, contains	97.81
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.61
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.45
PRK14279	392	chaperone protein DnaJ; Provisional	97.26
PRK14296	372	chaperone protein DnaJ; Provisional	97.1
PRK14278	378	chaperone protein DnaJ; Provisional	97.07
PRK14300	372	chaperone protein DnaJ; Provisional	97.05
PRK14298	377	chaperone protein DnaJ; Provisional	97.03
PRK14284	391	chaperone protein DnaJ; Provisional	97.03
PRK14286	372	chaperone protein DnaJ; Provisional	97.03
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.99
PRK14301	373	chaperone protein DnaJ; Provisional	96.98
PRK14282	369	chaperone protein DnaJ; Provisional	96.97
PRK10767	371	chaperone protein DnaJ; Provisional	96.96
PRK14288	369	chaperone protein DnaJ; Provisional	96.95
PRK14276	380	chaperone protein DnaJ; Provisional	96.95
PRK14295	389	chaperone protein DnaJ; Provisional	96.91
PRK14285	365	chaperone protein DnaJ; Provisional	96.9
PRK14297	380	chaperone protein DnaJ; Provisional	96.9
PRK14287	371	chaperone protein DnaJ; Provisional	96.88
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.86
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.85
PRK14280	376	chaperone protein DnaJ; Provisional	96.82
PRK14294	366	chaperone protein DnaJ; Provisional	96.78
PRK14277	386	chaperone protein DnaJ; Provisional	96.76
PRK14291	382	chaperone protein DnaJ; Provisional	96.7
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.7
PRK14289	386	chaperone protein DnaJ; Provisional	96.68
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.64
PRK14290	365	chaperone protein DnaJ; Provisional	96.64
PRK14281	397	chaperone protein DnaJ; Provisional	96.55
PRK14283	378	chaperone protein DnaJ; Provisional	96.48
PRK14293	374	chaperone protein DnaJ; Provisional	96.45
PRK14292	371	chaperone protein DnaJ; Provisional	96.08
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	95.3
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	94.79
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	93.69
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	91.17
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	89.22
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	87.56
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	86.55
PRK00635	1809	excinuclease ABC subunit A; Provisional	85.34
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	84.75
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	82.23
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	82.07
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	80.8

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.95  E-value=4.3e-29  Score=190.70  Aligned_cols=104  Identities=79%  Similarity=1.366  Sum_probs=97.7

Q ss_pred             ccCCcceEEEEEEeceeeeeecceEEEEEeeeCCCCC-------CCeeeeccCCCccCcccCCcCccccCCCCcccEEEE
Q 031166           47 AELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTV  119 (164)
Q Consensus        47 ~dl~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~-------~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~  119 (164)
                      .||||||+++|.+.....|+|++|||+|++|++.++.       ..|+|+|+.              +|+.|+|+|++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~--------------~C~~C~G~G~v~~   66 (111)
T PLN03165          1 VDLDQNTIVAISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQ--------------VCRFCVGSGNVTV   66 (111)
T ss_pred             CccchhhhhhhhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCc--------------CCCCCcCcCeEEE
Confidence            3899999999999999999999999999999999866       899999985              7999999999987


Q ss_pred             EeCCceeeeeeCCCCCccceeeCCCCcCceeeccccCCCcccCCC
Q 031166          120 ELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD  164 (164)
Q Consensus       120 ~~~G~~~~~~~C~~C~G~Gki~C~~C~G~G~v~~~l~~~~~~~~~  164 (164)
                      .+++.++.+++|++|+|.|+++|+.|+|+|++++||++|+|||||
T Consensus        67 ~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~~~~~~~  111 (111)
T PLN03165         67 ELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD  111 (111)
T ss_pred             EeCCcEEEEEECCCCCCcceeeCCCCCCCEEEeeeecccccCCCC
Confidence            765668889999999999999999999999999999999999998

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.4e-21  Score=171.82  Aligned_cols=93  Identities=20%  Similarity=0.384  Sum_probs=84.6

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCceeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGDEREFS  129 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~~~~~~  129 (164)
                      .|..+.|+|+|+||++|++++|.|++++.|   +.|+|+|+++++        .+.+|++|+|+|++...+ .|.|+.++
T Consensus       116 ~Dl~~~l~isleEa~~G~~~~i~~~~~~~C---~~C~GsGak~gt--------~~~tC~tC~G~G~v~~~~~~g~~~~~~  184 (371)
T COG0484         116 ADLRYNLEITLEEAVFGVKKEIRVTRSVTC---STCHGSGAKPGT--------DPKTCPTCNGSGQVRTVQRTGFFSFQQ  184 (371)
T ss_pred             CceEEEEEeEhhhhccCceeeEecceeeEC---CcCCCCCCCCCC--------CCCcCCCCCCcCeEEEEEeeeEEEEEE
Confidence            356788999999999999999999999999   999999999987        578999999999987754 37899999


Q ss_pred             eCCCCCcccee---eCCCCcCceeeccc
Q 031166          130 KCINCDGVGSL---TCTTCQGTGIQPRY  154 (164)
Q Consensus       130 ~C~~C~G~Gki---~C~~C~G~G~v~~~  154 (164)
                      +|++|+|+|++   +|++|+|.|++..+
T Consensus       185 ~C~~C~G~G~~i~~pC~~C~G~G~v~~~  212 (371)
T COG0484         185 TCPTCNGTGKIIKDPCGKCKGKGRVKKK  212 (371)
T ss_pred             ECCCCccceeECCCCCCCCCCCCeEeee
Confidence            99999999999   79999999997753

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=6.4e-17  Score=142.12  Aligned_cols=92  Identities=27%  Similarity=0.422  Sum_probs=83.0

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.|.+.+.|   ..|+|+|+..+.        .+.+|+.|+|+|.+...+   +|.++.
T Consensus       126 ~di~~~l~~slee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~  194 (369)
T PRK14282        126 EDIRYEIEVTLSDLINGAEIPVEYDRYETC---PHCGGTGVEPGS--------GYVTCPKCHGTGRIREERRSFFGVFVS  194 (369)
T ss_pred             CCeEEEEEEEHHHhcCCeEEEEEeeecccC---CCCCccCCCCCC--------CCcCCCCCCCcCEEEEEEEccCcceEE
Confidence            577899999999999999999999999999   999999998765        467999999999987754   578889


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeecc
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQPR  153 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~~  153 (164)
                      .++|+.|+|.|++   +|+.|+|.|++..
T Consensus       195 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  223 (369)
T PRK14282        195 ERTCERCGGTGKIPGEYCHECGGSGRIRR  223 (369)
T ss_pred             EEECCCCCCcceeCCCCCCCCCCceeEEE
Confidence            9999999999999   7999999998753

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=5.4e-17  Score=143.40  Aligned_cols=91  Identities=25%  Similarity=0.379  Sum_probs=82.8

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|+..++        .+.+|+.|+|+|++...+   +|.++.
T Consensus       115 ~di~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~  183 (377)
T PRK14298        115 SDLRYDLYITLEEAAFGVRKDIDVPRAERC---STCSGTGAKPGT--------SPKRCPTCGGTGQVTTTRSTPLGQFVT  183 (377)
T ss_pred             CCEEEEEEEEHHHhhCCeEEEEEEEeeccC---CCCCCCcccCCC--------CCCcCCCCCCccEEEEEEecCceeEEE
Confidence            577899999999999999999999999999   999999999775        467999999999988764   567889


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      .++|+.|+|.|++   +|+.|+|.|++.
T Consensus       184 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  211 (377)
T PRK14298        184 TTTCSTCHGRGQVIESPCPVCSGTGKVR  211 (377)
T ss_pred             EEeCCCCCCCCcccCCCCCCCCCccEEE
Confidence            9999999999998   799999999975

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=5.1e-17  Score=144.20  Aligned_cols=90  Identities=23%  Similarity=0.512  Sum_probs=82.5

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      +|..+.|.|+|+|++.|..++|.+++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|++...+ |.++..++
T Consensus       147 ~di~~~l~ltLee~~~G~~~~v~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~  214 (392)
T PRK14279        147 NDLETETTLDFVEAAKGVTMPLRLTSPAPC---TTCHGSGARPGT--------SPKVCPTCNGSGVISRNQ-GAFGFSEP  214 (392)
T ss_pred             CCeEEEEEEEHHHHhCCeEEEEeeeccccC---CCCccccccCCC--------CCCCCCCCcceEEEEEEe-cceEEEEe
Confidence            577889999999999999999999999999   999999998765        467999999999998776 77788999


Q ss_pred             CCCCCcccee---eCCCCcCceeec
Q 031166          131 CINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      |+.|+|+|++   +|+.|+|.|++.
T Consensus       215 C~~C~G~G~~i~~~C~~C~G~g~v~  239 (392)
T PRK14279        215 CTDCRGTGSIIEDPCEECKGTGVTT  239 (392)
T ss_pred             cCCCCceeEEeCCcCCCCCCCeEEE
Confidence            9999999999   799999999875

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=6.5e-17  Score=142.81  Aligned_cols=91  Identities=24%  Similarity=0.458  Sum_probs=82.3

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|+..++        .+.+|+.|+|+|++...+   +|.++.
T Consensus       113 ~d~~~~l~vtLee~~~G~~~~i~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~  181 (378)
T PRK14278        113 SDSLLRMRLDLEECATGVTKQVTVDTAVLC---DRCHGKGTAGDS--------KPVTCDTCGGRGEVQTVQRSFLGQVMT  181 (378)
T ss_pred             CCeEEEEEEEHHHhcCCeEEEEEEEeeccC---CCCcCccCCCCC--------CceecCCccCceEEEEEEeccceeEEE
Confidence            567899999999999999999999999999   999999998765        467999999999987754   577888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      .++|+.|+|.|++   +|+.|+|.|++.
T Consensus       182 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  209 (378)
T PRK14278        182 SRPCPTCRGVGEVIPDPCHECAGDGRVR  209 (378)
T ss_pred             EEECCCCCccceeeCCCCCCCCCceeEe
Confidence            8999999999999   799999999875

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=5.9e-17  Score=143.45  Aligned_cols=90  Identities=23%  Similarity=0.392  Sum_probs=82.6

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      ++..+.|.|+|+|++.|..++|.|.+.+.|   ..|+|+|+..++        .+++|+.|+|+|.+...+ |.++..++
T Consensus       132 ~d~~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~v~~~~-G~~~~~~~  199 (391)
T PRK14284        132 ASKKVHITLSFEEAAKGVEKELLVSGYKSC---DACSGSGANSSQ--------GIKVCDRCKGSGQVVQSR-GFFSMAST  199 (391)
T ss_pred             CCeEEEEEEEHHHHhCCeeEEEEEeeeccC---CCCcccccCCCC--------CCeecCccCCeeEEEEEe-ceEEEEEE
Confidence            467899999999999999999999999999   999999998765        467999999999998776 77889999


Q ss_pred             CCCCCcccee---eCCCCcCceeec
Q 031166          131 CINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      |+.|+|.|++   +|+.|+|.|++.
T Consensus       200 C~~C~G~G~~~~~~C~~C~G~g~v~  224 (391)
T PRK14284        200 CPECGGEGRVITDPCSVCRGQGRIK  224 (391)
T ss_pred             CCCCCCCCcccCCcCCCCCCcceec
Confidence            9999999998   799999999975

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=6.7e-17  Score=142.65  Aligned_cols=91  Identities=24%  Similarity=0.466  Sum_probs=82.6

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.|.+.+.|   ..|+|+|+..++        .+.+|+.|+|+|.+...+   +|.++.
T Consensus       120 ~di~~~l~vtLee~~~G~~~~i~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~  188 (380)
T PRK14276        120 DDLQYRVNLDFEEAIFGKEKEVSYNREATC---HTCNGSGAKPGT--------SPVTCGKCHGSGVITVDTQTPLGMMRR  188 (380)
T ss_pred             CCEEEEEEEEHHHhcCCeEEEEEeeccccC---CCCcCcccCCCC--------CCccCCCCCCeeEEEEEEecCCceEEE
Confidence            467889999999999999999999999999   999999998765        467999999999987764   577888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      .++|+.|+|.|++   +|+.|+|.|++.
T Consensus       189 ~~~C~~C~G~G~~~~~~C~~C~G~g~~~  216 (380)
T PRK14276        189 QVTCDVCHGTGKEIKEPCQTCHGTGHEK  216 (380)
T ss_pred             EEECCCCCCCCccccCCCCCCCCceEEE
Confidence            9999999999999   799999999975

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=6.7e-17  Score=143.35  Aligned_cols=90  Identities=22%  Similarity=0.447  Sum_probs=82.7

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      +|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|+..++        .+.+|+.|+|+|++...+ |.|+.+++
T Consensus       140 ~di~~~l~lsLee~~~G~~k~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~  207 (389)
T PRK14295        140 ADVESEVTLSFTEAIDGATVPLRLTSQAPC---PACSGTGAKNGT--------TPRVCPTCSGTGQVSRNS-GGFSLSEP  207 (389)
T ss_pred             CCEEEEEEEEHHHHhCCceEEEEeeccccC---CCCcccccCCCC--------CCcCCCCCCCEeEEEEEe-cceEEEEe
Confidence            577889999999999999999999999999   999999999775        467999999999998876 67889999


Q ss_pred             CCCCCcccee---eCCCCcCceeec
Q 031166          131 CINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      |+.|+|.|++   +|+.|.|.|++.
T Consensus       208 C~~C~G~G~~~~~~C~~C~G~g~~~  232 (389)
T PRK14295        208 CPDCKGRGLIADDPCLVCKGSGRAK  232 (389)
T ss_pred             cCCCcceeEEeccCCCCCCCCceEe
Confidence            9999999999   699999999875

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=7.2e-17  Score=142.26  Aligned_cols=90  Identities=24%  Similarity=0.433  Sum_probs=82.6

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      +|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|.+...+ |.++..++
T Consensus       124 ~di~~~l~vtLee~~~G~~k~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~v~~~~-G~~~~~~~  191 (372)
T PRK14286        124 SDLRYNLEVSLEDAALGREYKIEIPRLESC---VDCNGSGASKGS--------SPTTCPDCGGSGQIRRTQ-GFFSVATT  191 (372)
T ss_pred             CCeeEEEEEEHHHHhCCeeEEEEeeccccC---CCCcCCCcCCCC--------CCccCCCCcCeEEEEEEe-ceEEEEEe
Confidence            578899999999999999999999999999   999999998765        467999999999988775 77889999


Q ss_pred             CCCCCcccee---eCCCCcCceeec
Q 031166          131 CINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      |+.|+|.|++   +|+.|+|.|.+.
T Consensus       192 C~~C~G~G~~~~~~C~~C~G~g~~~  216 (372)
T PRK14286        192 CPTCRGKGTVISNPCKTCGGQGLQE  216 (372)
T ss_pred             CCCCCceeeEecccCCCCCCCcEEe
Confidence            9999999999   799999999986

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=9.8e-17  Score=141.42  Aligned_cols=92  Identities=23%  Similarity=0.416  Sum_probs=82.7

Q ss_pred             CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCcee
Q 031166           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDER  126 (164)
Q Consensus        50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~  126 (164)
                      .+|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|+..++        .+.+|+.|+|+|++...+   +|.++
T Consensus       116 g~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~  184 (376)
T PRK14280        116 GADLQYTMTLTFEEAVFGKEKEIEIPKEETC---DTCHGSGAKPGT--------SKETCSHCGGSGQVSVEQNTPFGRVV  184 (376)
T ss_pred             ccCEEEEEEEEHHHHhCCceeEEEEeeeccC---CCCCCcccCCCC--------CCccCCCCCCEEEEEEEeecCCceEE
Confidence            3577899999999999999999999999999   999999998765        467999999999987764   46778


Q ss_pred             eeeeCCCCCcccee---eCCCCcCceeec
Q 031166          127 EFSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       127 ~~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      ..++|+.|+|.|++   +|+.|+|.|++.
T Consensus       185 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  213 (376)
T PRK14280        185 NRQTCPHCNGTGQEIKEKCPTCHGKGKVR  213 (376)
T ss_pred             EEEEcCCCCCCCceecCCCCCCCCceEEE
Confidence            88999999999998   699999999875

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=9.2e-17  Score=141.28  Aligned_cols=90  Identities=24%  Similarity=0.449  Sum_probs=81.9

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      +|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|++... .|.++.+++
T Consensus       120 ~di~~~l~vtlee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~-~G~~~~~~~  187 (365)
T PRK14285        120 QDLTYQIEISLEDAYLGYKNNINITRNMLC---ESCLGKKSEKGT--------SPSICNMCNGSGRVMQG-GGFFRVTTT  187 (365)
T ss_pred             CCEEEEEEEEHHHhhCCeEEEEEeeecccC---CCCCCcccCCCC--------CCccCCCccCceeEEec-CceeEEeee
Confidence            577899999999999999999999999999   999999998765        46799999999998864 477888999


Q ss_pred             CCCCCcccee---eCCCCcCceeec
Q 031166          131 CINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      |+.|+|.|++   +|+.|+|.|++.
T Consensus       188 C~~C~G~G~~~~~~C~~C~G~g~v~  212 (365)
T PRK14285        188 CPKCYGNGKIISNPCKSCKGKGSLK  212 (365)
T ss_pred             cCCCCCcccccCCCCCCCCCCCEEe
Confidence            9999999999   799999999875

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=1e-16  Score=141.48  Aligned_cols=91  Identities=26%  Similarity=0.465  Sum_probs=80.3

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCc--eee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGD--ERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~--~~~  127 (164)
                      +|..+.|.|+|+||+.|.+++|.|++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|.+...+ .|.  ++.
T Consensus       123 ~di~~~l~ltlee~~~G~~~~i~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~g~~~~q~  191 (372)
T PRK14296        123 QSVSLDIYLTFKELLFGVDKIIELDLLTNC---SKCFGSGAESNS--------DIHICNNCHGTGEVLVQKNMGFFQFQQ  191 (372)
T ss_pred             CCeEEEeeccHHHhhCCeeEEEEEeeeecc---CCCCCCccCCCC--------CCccCCCCCCCceEEEEEeccceEEEE
Confidence            577889999999999999999999999999   999999998765        467999999999987754 343  456


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      .++|+.|+|.|++   +|+.|+|.|++.
T Consensus       192 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  219 (372)
T PRK14296        192 SAKCNVCNGAGKIIKNKCKNCKGKGKYL  219 (372)
T ss_pred             EecCCCcCCcceeecccccCCCCceEEE
Confidence            7899999999999   699999999875

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=1.1e-16  Score=141.20  Aligned_cols=90  Identities=24%  Similarity=0.424  Sum_probs=82.5

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      +|..+.|.|+|+|++.|.+++|.+++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|++...+ |.++..++
T Consensus       118 ~di~~~l~vtLee~~~G~~k~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~v~~~~-G~~~~~~~  185 (373)
T PRK14301        118 SDLRYNLTVSFRQAAKGDEVTLRIPKNVTC---DDCGGSGAAPGT--------SPETCRHCGGSGQVRQSQ-GFFQIAVP  185 (373)
T ss_pred             CCEEEEEeccHHHHhCCceEEEEeeecccC---CCCCCcccCCCC--------CCcccCCccCeeEEEEEe-eeEEEEEe
Confidence            578899999999999999999999999999   999999998765        467999999999998765 77888999


Q ss_pred             CCCCCcccee---eCCCCcCceeec
Q 031166          131 CINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      |+.|+|.|++   +|+.|+|.|++.
T Consensus       186 C~~C~G~G~~~~~~C~~C~G~g~v~  210 (373)
T PRK14301        186 CPVCRGEGRVITHPCPKCKGSGIVQ  210 (373)
T ss_pred             CCCCCceeeecCCCCCCCCCCceec
Confidence            9999999999   799999999975

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=2.7e-16  Score=138.60  Aligned_cols=92  Identities=22%  Similarity=0.406  Sum_probs=82.6

Q ss_pred             CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCcee
Q 031166           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDER  126 (164)
Q Consensus        50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~  126 (164)
                      .+|..+.|.|+|+|+++|..++|.|.+.+.|   ..|+|+|+..+.        .+.+|+.|+|+|++...+   +|.++
T Consensus       111 g~d~~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~  179 (371)
T PRK14287        111 GADLQYTMTLEFKEAVFGKETEIEIPREETC---GTCHGSGAKPGT--------KPETCSHCGGSGQLNVEQNTPFGRVV  179 (371)
T ss_pred             CCCEEEEEEEEHHHhcCCeEEEEEEeeeccC---CCCCCcccCCCC--------CCcccCCCCCEEEEEEEEecCCceEE
Confidence            3577899999999999999999999999999   999999998765        466899999999987765   57788


Q ss_pred             eeeeCCCCCcccee---eCCCCcCceeec
Q 031166          127 EFSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       127 ~~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      ..++|+.|+|.|++   +|..|+|.|.+.
T Consensus       180 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  208 (371)
T PRK14287        180 NRRVCHHCEGTGKIIKQKCATCGGKGKVR  208 (371)
T ss_pred             EEEeCCCCCCCCccccccCCCCCCeeEEe
Confidence            88999999999999   799999999875

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=2.2e-16  Score=138.41  Aligned_cols=91  Identities=22%  Similarity=0.405  Sum_probs=82.6

Q ss_pred             CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeee
Q 031166           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFS  129 (164)
Q Consensus        50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~  129 (164)
                      .+|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|...+.        .+..|+.|+|+|.+...+ |.++..+
T Consensus       115 g~di~~~l~vsLee~~~G~~~~v~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~  182 (371)
T PRK10767        115 GADLRYNMEITLEEAVRGVTKEIRIPTLVTC---DTCHGSGAKPGT--------SPKTCPTCHGAGQVRMQQ-GFFTVQQ  182 (371)
T ss_pred             CCCeEEEEEeehHHhhCCeeEEEeeeecccC---CCCCCcccCCCC--------CCccCCCCCCeeEEEEee-ceEEEEE
Confidence            3577899999999999999999999999999   999999998765        456899999999988776 7778889


Q ss_pred             eCCCCCcccee---eCCCCcCceeec
Q 031166          130 KCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       130 ~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      +|+.|+|.|++   +|+.|+|.|++.
T Consensus       183 ~C~~C~G~G~~~~~~C~~C~G~g~v~  208 (371)
T PRK10767        183 TCPTCHGRGKIIKDPCKKCHGQGRVE  208 (371)
T ss_pred             eCCCCCCceeECCCCCCCCCCCceEe
Confidence            99999999999   799999999975

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=2.8e-16  Score=138.51  Aligned_cols=91  Identities=22%  Similarity=0.399  Sum_probs=82.2

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|..++.        .+.+|+.|+|+|++...+   +|.++.
T Consensus       122 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~  190 (380)
T PRK14297        122 ADIEYTINLTFEEAVFGVEKEISVTRNENC---ETCNGTGAKPGT--------SPKTCDKCGGTGQIRVQRNTPLGSFVS  190 (380)
T ss_pred             CCEEEEEEEEHHHhcCCeEEEEEeeeeccC---CCcccccccCCC--------cCccCCCccCeEEEEEEEEcCCceeEE
Confidence            578899999999999999999999999999   999999998765        366899999999987754   577888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      .++|+.|+|.|++   +|..|+|.|++.
T Consensus       191 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  218 (380)
T PRK14297        191 TTTCDKCGGSGKVIEDPCNKCHGKGKVR  218 (380)
T ss_pred             EEeCCCCCCCceEcCCCCCCCCCCeEEE
Confidence            9999999999999   799999999764

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=2.8e-16  Score=139.58  Aligned_cols=90  Identities=23%  Similarity=0.478  Sum_probs=81.3

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|+..+.         +.+|+.|+|+|+++..+   +|.++.
T Consensus       137 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~---------~~~C~~C~G~G~~~~~~~~~~g~~~~  204 (397)
T PRK14281        137 TDLKIRLKLTLEEIAKGVEKTLKIKKQVPC---KECNGTGSKTGA---------TETCPTCHGSGEVRQASKTMFGQFVN  204 (397)
T ss_pred             CCEEEEEEeEHHHHhCCeEEEEEEEeeecC---CCCCCcccCCCC---------CccCCCCCCCcEEEEEEecccceEEE
Confidence            577889999999999999999999999999   999999998653         56899999999987764   577888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      +++|+.|+|.|++   +|+.|+|.|++.
T Consensus       205 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  232 (397)
T PRK14281        205 ITACPTCGGEGRVVKDRCPACYGEGIKQ  232 (397)
T ss_pred             EEecCCCcceeeeeCCCCCCCCCCccEe
Confidence            8999999999998   799999999985

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=2.2e-16  Score=139.11  Aligned_cols=89  Identities=22%  Similarity=0.363  Sum_probs=80.8

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      +|..+.|.|+|+|++.|..++|.|.+.+.|   ..|+|+|+..+.         +.+|+.|+|+|.+...+ |.++..++
T Consensus       114 ~di~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~---------~~~C~~C~G~G~~~~~~-g~~~~~~~  180 (369)
T PRK14288        114 PDYLQTIELSFKEAVFGCKKTIKVQYQSVC---ESCDGTGAKDKA---------LETCKQCNGQGQVFMRQ-GFMSFAQT  180 (369)
T ss_pred             CCeeEeccccHHHHhCCeEEEEEEEeeccC---CCCCCcccCCCC---------CcCCCCCCCCcEEEEEe-ceEEEEEe
Confidence            577889999999999999999999999999   999999998653         56899999999988776 77888899


Q ss_pred             CCCCCcccee---eCCCCcCceeec
Q 031166          131 CINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      |+.|+|.|++   +|+.|+|.|++.
T Consensus       181 C~~C~G~G~~~~~~C~~C~G~g~v~  205 (369)
T PRK14288        181 CGACQGKGKIIKTPCQACKGKTYIL  205 (369)
T ss_pred             cCCCCCCceEccccCccCCCcceEE
Confidence            9999999998   799999999875

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=3.1e-16  Score=138.09  Aligned_cols=90  Identities=21%  Similarity=0.453  Sum_probs=81.7

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      ++..+.|.|+|+|++.|..++|.|++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|.+.... |.++...+
T Consensus       119 ~di~~~l~~sLee~~~G~~k~i~~~r~~~C---~~C~G~g~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~  186 (372)
T PRK14300        119 SDLKYNLTINLEEAFHGIEKNISFSSEVKC---DTCHGSGSEKGE--------TVTTCDACSGVGATRMQQ-GFFTIEQA  186 (372)
T ss_pred             CCeeEEEEEEHHHHhCCceEEEEeeecccc---CCCCCcccCCCC--------CCccCCCccCeEEEEEee-ceEEEEEe
Confidence            477889999999999999999999999999   999999998665        466999999999988654 77888899


Q ss_pred             CCCCCcccee---eCCCCcCceeec
Q 031166          131 CINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      |+.|+|.|++   +|+.|+|.|++.
T Consensus       187 C~~C~G~G~~~~~~C~~C~G~g~v~  211 (372)
T PRK14300        187 CHKCQGNGQIIKNPCKKCHGMGRYH  211 (372)
T ss_pred             CCCCCccceEeCCCCCCCCCceEEE
Confidence            9999999999   799999999975

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=4.3e-16  Score=137.75  Aligned_cols=91  Identities=24%  Similarity=0.385  Sum_probs=82.2

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.+++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|++...+   +|.++.
T Consensus       129 ~di~~~l~vtLee~~~G~~~~v~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~  197 (386)
T PRK14277        129 ADIRYDLELTFEEAAFGTEKEIEVERFEKC---DVCKGSGAKPGS--------KPVTCPVCHGTGQVRTRQNTPFGRIVN  197 (386)
T ss_pred             CCEEEEEEEEHHHHhCCeEEEEEEEeeccC---CCCCCCCcCCCC--------CCccCCCCCCEEEEEEEEeccCceEEE
Confidence            578899999999999999999999999999   999999998665        467999999999987654   577888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      .++|+.|+|.|++   +|+.|+|.|.+.
T Consensus       198 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  225 (386)
T PRK14277        198 IRTCDRCHGEGKIITDPCNKCGGTGRIR  225 (386)
T ss_pred             EEECCCCCcceeeccCCCCCCCCCcEEe
Confidence            8999999999999   799999999975

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=4.5e-16  Score=137.47  Aligned_cols=90  Identities=21%  Similarity=0.372  Sum_probs=82.0

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK  130 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~  130 (164)
                      +|..+.|.|+|+||+.|..++|.+++.+.|   ..|+|+|+..++        .+.+|+.|+|+|.+.... |.++..++
T Consensus       130 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~  197 (382)
T PRK14291        130 EDIYQTVEISLEEAYTGTTVSLEVPRYVPC---EACGGTGYDPGS--------GEKVCPTCGGSGEIYQRG-GFFRISQT  197 (382)
T ss_pred             CCEEEEEEEEHHHhhCCEEEEEEEeeeccC---CCCccccCCCCC--------CCccCCCCCCceEEEEec-ceEEEEec
Confidence            578899999999999999999999999999   999999998765        467999999999988774 77888999


Q ss_pred             CCCCCcccee--eCCCCcCceeec
Q 031166          131 CINCDGVGSL--TCTTCQGTGIQP  152 (164)
Q Consensus       131 C~~C~G~Gki--~C~~C~G~G~v~  152 (164)
                      |+.|+|.|.+  +|+.|+|.|++.
T Consensus       198 C~~C~G~G~~~~~C~~C~G~g~v~  221 (382)
T PRK14291        198 CPTCGGEGVLREPCSKCNGRGLVI  221 (382)
T ss_pred             CCCCCCceEEccCCCCCCCCceEE
Confidence            9999999977  799999999875

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=4.4e-16  Score=136.68  Aligned_cols=91  Identities=23%  Similarity=0.394  Sum_probs=82.5

Q ss_pred             CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeee
Q 031166           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFS  129 (164)
Q Consensus        50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~  129 (164)
                      .+|..+.|.|+|+|++.|..++|.+++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|.+.... |.++..+
T Consensus       117 g~d~~~~l~lslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-G~~~~~~  184 (366)
T PRK14294        117 GADLRYDLTLPFLEAAFGTEKEIRIQKLETC---EECHGSGCEPGT--------SPTTCPQCGGSGQVTQSQ-GFFSIRT  184 (366)
T ss_pred             CCCceEEEEeeHHHhcCCeEEEEEeeecccC---CCCCCccccCCC--------CcccCCCcCCeEEEEEEe-eeEEEEe
Confidence            3578899999999999999999999999999   999999998765        466999999999987655 7788899


Q ss_pred             eCCCCCcccee---eCCCCcCceeec
Q 031166          130 KCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       130 ~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      +|+.|+|.|++   +|+.|+|.|.+.
T Consensus       185 ~C~~C~G~G~~~~~~C~~C~G~g~v~  210 (366)
T PRK14294        185 TCPRCRGMGKVIVSPCKTCHGQGRVR  210 (366)
T ss_pred             eCCCCCCcCeecCcCCCCCCCceEee
Confidence            99999999999   799999999975

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.64  E-value=5.5e-16  Score=134.83  Aligned_cols=91  Identities=22%  Similarity=0.383  Sum_probs=82.1

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.+++.+.|   ..|+|+|+..+.        .+.+|+.|+|+|.+...+   +|.++.
T Consensus       117 ~d~~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~  185 (354)
T TIGR02349       117 EDLRYDLELTFEEAVFGVEKEIEIPRKESC---ETCHGTGAKPGT--------DPKTCPTCGGTGQVRRQQGTPFGFFQQ  185 (354)
T ss_pred             CCeEEEEEEEHHHHhCCeeEEEEeecCCcC---CCCCCCCCCCCC--------CCccCCCCCCeeEEEEEEeccCCceEE
Confidence            577899999999999999999999999999   999999998665        466899999999988765   467888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      +++|+.|+|.|++   +|+.|+|.|++.
T Consensus       186 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  213 (354)
T TIGR02349       186 QQTCPTCGGEGKIIKEPCSTCKGKGRVK  213 (354)
T ss_pred             EEecCCCCCcceecCCCCCCCCCCcEec
Confidence            8999999999998   699999999875

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1.9e-15  Score=133.33  Aligned_cols=91  Identities=25%  Similarity=0.467  Sum_probs=81.8

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.|.+.+.|   ..|+|+|+..+.        .+.+|+.|+|+|.+....   +|.++.
T Consensus       128 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~  196 (386)
T PRK14289        128 SDLRVKVKLNLKEISTGVEKKFKVKKYVPC---SHCHGTGAEGNN--------GSETCPTCKGSGSVTRVQNTILGTMQT  196 (386)
T ss_pred             CCeEEEEEEEHHHhhCCeEEEEEEEeeccc---CCCCCCCCCCCC--------CCCcCCCCcCeEEEEEEEecccceEEE
Confidence            577889999999999999999999999999   999999998654        466999999999988764   477888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      ..+|+.|+|.|++   .|+.|+|.|++.
T Consensus       197 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  224 (386)
T PRK14289        197 QSTCPTCNGEGKIIKKKCKKCGGEGIVY  224 (386)
T ss_pred             EEecCCCCccccccCcCCCCCCCCcEEe
Confidence            9999999999998   799999999875

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=4.3e-15  Score=130.42  Aligned_cols=92  Identities=24%  Similarity=0.409  Sum_probs=79.5

Q ss_pred             CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCce--e
Q 031166           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGDE--R  126 (164)
Q Consensus        50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~~--~  126 (164)
                      +++..+.|.|+|+|++.|..++|.+.+.+.|   ..|+|+|+..+.         +.+|+.|+|+|.+.... .|.+  +
T Consensus       122 ~~di~~~l~lsLee~~~G~~~~i~~~r~~~C---~~C~G~g~~~~~---------~~~C~~C~G~G~~~~~~~~g~~~~~  189 (365)
T PRK14290        122 DLDIYTNLDISLEDAYYGTEKRIKYRRNAMC---PDCSGTGAKNGK---------LITCPTCHGTGQQRIVRGQGFFRMV  189 (365)
T ss_pred             CCCEEEEEEecHHHhcCCEEEEEEeeecccC---CCCccccCCCCC---------CccCCCCCCcCEEEEEeccCeEEEE
Confidence            4678899999999999999999999999999   999999998642         56899999999987765 4543  3


Q ss_pred             eeeeCCCCCcccee---eCCCCcCceeecc
Q 031166          127 EFSKCINCDGVGSL---TCTTCQGTGIQPR  153 (164)
Q Consensus       127 ~~~~C~~C~G~Gki---~C~~C~G~G~v~~  153 (164)
                      ..++|+.|+|.|++   +|+.|+|.|++..
T Consensus       190 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  219 (365)
T PRK14290        190 TVTTCRTCGGRGRIPEEKCPRCNGTGTVVV  219 (365)
T ss_pred             EEEeCCCCCCceeEccCCCCCCCCceeEEE
Confidence            46799999999999   7999999999753

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.58  E-value=3.3e-15  Score=134.50  Aligned_cols=90  Identities=22%  Similarity=0.467  Sum_probs=77.7

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEE-eCCc--eee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVE-LGGD--ERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~-~~G~--~~~  127 (164)
                      +|..+.|.|+|+|++.|..++|.|.+.+.|   ..|+|+|+..+         .+.+|+.|+|+|.+... +.|.  ++.
T Consensus       124 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~---------~~~~C~~C~G~G~~~~~~~~g~~~~q~  191 (421)
T PTZ00037        124 EDIVSHLKVTLEQIYNGAMRKLAINKDVIC---ANCEGHGGPKD---------AFVDCKLCNGQGIRVQIRQMGSMIHQT  191 (421)
T ss_pred             CCEEEEeeeeHHHHhCCCceEEEeeccccc---cccCCCCCCCC---------CCccCCCCCCCCeEEEEEeecceeeEE
Confidence            577899999999999999999999999999   99999998754         35689999999986543 3343  457


Q ss_pred             eeeCCCCCcccee-----eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL-----TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki-----~C~~C~G~G~v~  152 (164)
                      +++|+.|+|.|++     +|+.|+|.|++.
T Consensus       192 ~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~  221 (421)
T PTZ00037        192 QSTCNSCNGQGKIIPESKKCKNCSGKGVKK  221 (421)
T ss_pred             EEeCCCCCCcceeccccccCCcCCCcceee
Confidence            7899999999998     599999999986

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=5.6e-15  Score=130.25  Aligned_cols=91  Identities=22%  Similarity=0.399  Sum_probs=81.5

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.+.|+|+|++.|..++|.+.+.+.|   +.|+|+|...+.        .+.+|+.|+|+|.+....   +|.++.
T Consensus       120 ~di~~~l~vsLed~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~  188 (378)
T PRK14283        120 ADIYTEVEITLEEAASGVEKDIKVRHTKKC---PVCNGSRAEPGS--------EVKTCPTCGGTGQVKQVRNTILGQMMN  188 (378)
T ss_pred             CCeEEEeeeeHHHHhCCcceEEEeeeeccC---CCCCccccCCCC--------CCccCCCcCCccEEEEEEeccCceEEE
Confidence            466889999999999999999999999999   999999998665        466899999999987754   477888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      ..+|++|+|.|++   +|..|+|.|.+.
T Consensus       189 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  216 (378)
T PRK14283        189 VTTCPDCQGEGKIVEKPCSNCHGKGVVR  216 (378)
T ss_pred             EEECCCCCccceecCCCCCCCCCceeec
Confidence            8999999999998   799999999875

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=5.1e-15  Score=130.33  Aligned_cols=92  Identities=21%  Similarity=0.373  Sum_probs=81.2

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      .+-.+.|.|+|+|++.|..++|.|.+.+.|   ..|+|+|+..+.        .+.+|+.|+|+|.+....   .|.++.
T Consensus       117 ~di~~~l~vsLee~~~G~~k~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~  185 (374)
T PRK14293        117 DDLRYDLKLDFREAIFGGEKEIRIPHLETC---ETCRGSGAKPGT--------GPTTCSTCGGAGQVRRATRTPFGSFTQ  185 (374)
T ss_pred             CCeEEEEEeeHHHHhCCceEEEEeeccccC---CCCCCcCCCCCC--------CCeeCCCCCCcceEEEEEecCcceEEE
Confidence            356688999999999999999999999999   999999998665        456899999999987754   477888


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeecc
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQPR  153 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~~  153 (164)
                      ..+|+.|+|.|++   +|+.|+|.|++..
T Consensus       186 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  214 (374)
T PRK14293        186 VSECPTCNGTGQVIEDPCDACGGQGVKQV  214 (374)
T ss_pred             EeeCCCCCcceeEeccCCCCCCCCccccc
Confidence            8999999999999   7999999998753

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=7.2e-15  Score=128.93  Aligned_cols=92  Identities=20%  Similarity=0.360  Sum_probs=81.2

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~  127 (164)
                      +|..+.+.|+|+|+++|..++|.+++.+.|   +.|+|+|+..+..       .+.+|+.|+|+|.+....   +|.++.
T Consensus       113 ~d~~~~l~~sLee~~~G~~~~v~~~r~~~C---~~C~G~G~~~~~~-------~~~~C~~C~G~G~~~~~~~~~~g~~~~  182 (371)
T PRK14292        113 DDLETEARITLEQARAGEEVEVEVDRLTEC---EHCHGSRTEPGGK-------PPKTCPTCRGAGAVRAQARTIFGVVET  182 (371)
T ss_pred             CCeEEEEeccHHHHcCCeEEEEEEEeeecC---CCCcccccCCCCC-------CCccCCCCCCccEEEEEEeccCceEEE
Confidence            577889999999999999999999999999   9999999986532       256899999999987654   577788


Q ss_pred             eeeCCCCCcccee---eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      .++|+.|+|.|++   +|+.|.|.|++.
T Consensus       183 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~  210 (371)
T PRK14292        183 QQPCPTCRGEGQIITDPCTVCRGRGRTL  210 (371)
T ss_pred             eeecCCCcccceecCCCCCCCCCceEEe
Confidence            8999999999999   799999999875

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.45  E-value=1.1e-13  Score=95.56  Aligned_cols=58  Identities=33%  Similarity=0.656  Sum_probs=47.4

Q ss_pred             CCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceeeeeeCCCCCcccee----eCCCCcCce
Q 031166           84 FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDEREFSKCINCDGVGSL----TCTTCQGTG  149 (164)
Q Consensus        84 ~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~~~~C~~C~G~Gki----~C~~C~G~G  149 (164)
                      +.|+|+|++++.        .+.+|+.|+|+|++...+   ++.++.+++|+.|+|+|++    +|+.|+|+|
T Consensus         2 ~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    2 PKCNGTGAKPGK--------KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             CCCTTTSB-STT--------T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CcCCCcccCCCC--------CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            789999997665        577999999999998865   6789999999999999999    499999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.3e-10  Score=103.13  Aligned_cols=91  Identities=23%  Similarity=0.414  Sum_probs=80.0

Q ss_pred             CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCc---e
Q 031166           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGD---E  125 (164)
Q Consensus        50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~---~  125 (164)
                      -.++++.|+|+|+|+++|..+++++.++..|   +.|+|+|-.+++         ...|+.|.|+|...... .|-   -
T Consensus       100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iC---s~C~GsGgksg~---------~~~C~~C~GsGv~~~~~~~gPg~~q  167 (337)
T KOG0712|consen  100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFIC---SKCSGSGGKSGS---------APKCTTCRGSGVQTRTRQMGPGMVQ  167 (337)
T ss_pred             CCCceEEEEEEHHHhhcCCccceecccCccC---CcCCCCCCCCCC---------CCCCCCCCCCCceeEEEeccccccc
Confidence            5799999999999999999999999999999   999999999876         23799999999977654 222   3


Q ss_pred             eeeeeCCCCCcccee-----eCCCCcCceeec
Q 031166          126 REFSKCINCDGVGSL-----TCTTCQGTGIQP  152 (164)
Q Consensus       126 ~~~~~C~~C~G~Gki-----~C~~C~G~G~v~  152 (164)
                      +.+..|..|+|+|..     .|+.|.|++.+.
T Consensus       168 s~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~  199 (337)
T KOG0712|consen  168 SPQLVCDSCNGSGETISLKDRCKTCSGAKVVR  199 (337)
T ss_pred             cceeEeccCCCccccccccccCcccccchhhh
Confidence            567789999999997     799999999976

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=4.3e-09  Score=91.01  Aligned_cols=92  Identities=26%  Similarity=0.461  Sum_probs=78.4

Q ss_pred             CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeee
Q 031166           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFS  129 (164)
Q Consensus        50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~  129 (164)
                      |++..+...++|++|+.|..+.+.+.....|   ..|.|.|++++.        ....|..|+|+|.+.......|... 
T Consensus       137 ~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~---~t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~f~~~-  204 (288)
T KOG0715|consen  137 DKDQYYDLSLDFKEAVRGSKKRISFNVLSDC---ETCFGSGAEEGA--------KRESCKTCSGRGLVSNPKEDPFILY-  204 (288)
T ss_pred             CcccccccccCHHHHhhccccceEEEeeccc---ccccCcCccccc--------ccccchhhhCcccccccccCCccee-
Confidence            3466677899999999999999999999999   999999998876        5779999999997766443445444 


Q ss_pred             eCCCCCcccee---eCCCCcCceeecc
Q 031166          130 KCINCDGVGSL---TCTTCQGTGIQPR  153 (164)
Q Consensus       130 ~C~~C~G~Gki---~C~~C~G~G~v~~  153 (164)
                      +|..|.|.|.+   .|..|.|.|++..
T Consensus       205 ~~~~c~~~~~~~~~~c~~~~g~~~v~~  231 (288)
T KOG0715|consen  205 TCSYCLGRGLVLRDNCQACSGAGQVRR  231 (288)
T ss_pred             ecccccccceeccchHHHhhcchhhhh
Confidence            99999999999   5999999997653

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=6.7e-07  Score=80.35  Aligned_cols=29  Identities=41%  Similarity=0.891  Sum_probs=23.3

Q ss_pred             eeeeCCCCCccceeeCCCCcCceeecccc
Q 031166          127 EFSKCINCDGVGSLTCTTCQGTGIQPRYL  155 (164)
Q Consensus       127 ~~~~C~~C~G~Gki~C~~C~G~G~v~~~l  155 (164)
                      ...+|++|+|.|+++|.+|.|+|.+.+|.
T Consensus       244 G~~~C~tC~grG~k~C~TC~gtgsll~~t  272 (406)
T KOG2813|consen  244 GIKECHTCKGRGKKPCTTCSGTGSLLNYT  272 (406)
T ss_pred             CcccCCcccCCCCcccccccCccceeeeE
Confidence            44678888888888899999999877654

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=98.13  E-value=9.3e-07  Score=84.19  Aligned_cols=65  Identities=26%  Similarity=0.308  Sum_probs=49.7

Q ss_pred             eCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeC------------CceeeeeeCCCCCcccee----e
Q 031166           78 IDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELG------------GDEREFSKCINCDGVGSL----T  141 (164)
Q Consensus        78 ~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~------------G~~~~~~~C~~C~G~Gki----~  141 (164)
                      ..|   +.|+|+|...-+         .+.|+.|+|+|++.....            ++...-.+|+.|+|.|++    +
T Consensus         3 ~~C---~~C~g~G~i~v~---------~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~   70 (715)
T COG1107           3 KKC---PECGGKGKIVVG---------EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDT   70 (715)
T ss_pred             ccc---cccCCCceEeee---------eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEee
Confidence            357   999999987432         458999999999843221            112234699999999999    6


Q ss_pred             CCCCcCceeeccc
Q 031166          142 CTTCQGTGIQPRY  154 (164)
Q Consensus       142 C~~C~G~G~v~~~  154 (164)
                      |+.|.|+|++-.|
T Consensus        71 c~~c~G~gkv~~c   83 (715)
T COG1107          71 CPECGGTGKVLTC   83 (715)
T ss_pred             cccCCCceeEEee
Confidence            9999999998765

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.92  E-value=4.6e-06  Score=57.52  Aligned_cols=39  Identities=38%  Similarity=0.876  Sum_probs=28.4

Q ss_pred             cCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          108 CRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       108 C~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      |+.|+|+|...      -....+|+.|+|+|.+               +|+.|+|+|++.
T Consensus         1 C~~C~G~G~~~------~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKP------GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-S------TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCC------CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            88999999852      1245699999999998               599999999985

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=7.5e-06  Score=73.75  Aligned_cols=74  Identities=27%  Similarity=0.555  Sum_probs=50.1

Q ss_pred             eecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEE--------EEEe-CC----ceeeeeeCC
Q 031166           66 VGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSV--------TVEL-GG----DEREFSKCI  132 (164)
Q Consensus        66 ~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V--------~~~~-~G----~~~~~~~C~  132 (164)
                      .|...++.|.....=..+..|.|.|+.              .|+.|+|+|.-        .... -|    ...+...|-
T Consensus       173 ~~~~~~~~vphs~~v~~ch~c~gRG~~--------------vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~  238 (406)
T KOG2813|consen  173 SGVAHPAVVPHSMIVTFCHACLGRGAM--------------VCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCY  238 (406)
T ss_pred             cccccceeccchHhhhhhhcccCCCce--------------eccCcCCCCccccccCcceecccccCCCCCCCCccchhh
Confidence            344444444433322122899999977              89999999941        1110 11    134667899


Q ss_pred             CCCccceeeCCCCcCceeecc
Q 031166          133 NCDGVGSLTCTTCQGTGIQPR  153 (164)
Q Consensus       133 ~C~G~Gki~C~~C~G~G~v~~  153 (164)
                      +|+|+|+..|++|+|.|.++.
T Consensus       239 ~C~G~G~~~C~tC~grG~k~C  259 (406)
T KOG2813|consen  239 MCHGRGIKECHTCKGRGKKPC  259 (406)
T ss_pred             hccCCCcccCCcccCCCCccc
Confidence            999999999999999999863

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=2.4e-05  Score=70.79  Aligned_cols=42  Identities=38%  Similarity=0.916  Sum_probs=34.9

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-------------~C~~C~G~G~v~  152 (164)
                      ..+|++|+|+|.-.    |  ....+|++|+|+|.+             +|++|+|+|.+.
T Consensus       142 ~~~C~~C~GsGak~----g--t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i  196 (371)
T COG0484         142 SVTCSTCHGSGAKP----G--TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII  196 (371)
T ss_pred             eeECCcCCCCCCCC----C--CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC
Confidence            34899999999853    2  255899999999975             699999999976

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.45  E-value=9.7e-05  Score=56.89  Aligned_cols=37  Identities=35%  Similarity=0.798  Sum_probs=30.9

Q ss_pred             CccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee------------eCCCCcCceeec
Q 031166          104 LRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL------------TCTTCQGTGIQP  152 (164)
Q Consensus       104 ~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki------------~C~~C~G~G~v~  152 (164)
                      ....|..|+|+|.            .+|+.|+|.|.+            +|++|+|+|++.
T Consensus        40 ~~v~C~~C~GsG~------------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~   88 (111)
T PLN03165         40 NTQPCFPCSGTGA------------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT   88 (111)
T ss_pred             cCCCCCCCCCCCC------------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceee
Confidence            3458999999997            279999998876            599999999754

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.26  E-value=0.00015  Score=65.05  Aligned_cols=42  Identities=33%  Similarity=0.778  Sum_probs=34.3

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|....      ....+|+.|+|.|.+           +|+.|+|+|++.
T Consensus       173 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i  225 (392)
T PRK14279        173 PAPCTTCHGSGARPG------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII  225 (392)
T ss_pred             cccCCCCccccccCC------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe
Confidence            348999999998531      134789999999986           699999999974

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.10  E-value=0.00023  Score=63.37  Aligned_cols=42  Identities=31%  Similarity=0.831  Sum_probs=33.6

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...-      ....+|+.|+|+|.+               +|+.|+|+|.+.
T Consensus       149 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~  205 (372)
T PRK14296        149 LTNCSKCFGSGAESN------SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII  205 (372)
T ss_pred             eeccCCCCCCccCCC------CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee
Confidence            347999999998431      123679999999975               699999999974

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.07  E-value=0.00028  Score=62.84  Aligned_cols=42  Identities=31%  Similarity=0.733  Sum_probs=33.4

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...    +  ....+|+.|+|.|.+               +|+.|+|+|++.
T Consensus       139 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  195 (378)
T PRK14278        139 AVLCDRCHGKGTAG----D--SKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI  195 (378)
T ss_pred             eccCCCCcCccCCC----C--CCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee
Confidence            34899999999743    1  234689999999964               699999999974

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.05  E-value=0.00028  Score=62.71  Aligned_cols=41  Identities=39%  Similarity=0.912  Sum_probs=33.4

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|.-.    +  ....+|+.|+|.|.+           +|+.|+|+|++.
T Consensus       146 ~~C~~C~G~g~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  197 (372)
T PRK14300        146 VKCDTCHGSGSEK----G--ETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII  197 (372)
T ss_pred             cccCCCCCcccCC----C--CCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe
Confidence            4899999999743    1  133689999999976           699999999985

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.03  E-value=0.0003  Score=62.79  Aligned_cols=42  Identities=38%  Similarity=0.873  Sum_probs=33.3

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...    +  ....+|+.|+|.|.+               +|+.|+|+|.+.
T Consensus       141 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  197 (377)
T PRK14298        141 AERCSTCSGTGAKP----G--TSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI  197 (377)
T ss_pred             eccCCCCCCCcccC----C--CCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc
Confidence            34899999999742    2  134679999999965               599999999874

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.03  E-value=0.0003  Score=62.86  Aligned_cols=42  Identities=33%  Similarity=0.774  Sum_probs=33.7

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|.-.    +  ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       158 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  210 (391)
T PRK14284        158 YKSCDACSGSGANS----S--QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI  210 (391)
T ss_pred             eccCCCCcccccCC----C--CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc
Confidence            34899999999742    1  134789999999984           799999999864

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.03  E-value=0.00032  Score=62.37  Aligned_cols=42  Identities=38%  Similarity=0.847  Sum_probs=33.7

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...    +  ....+|+.|+|.|.+           +|+.|+|+|++.
T Consensus       150 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  202 (372)
T PRK14286        150 LESCVDCNGSGASK----G--SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI  202 (372)
T ss_pred             cccCCCCcCCCcCC----C--CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe
Confidence            34899999999842    1  123689999999976           699999999875

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.99  E-value=0.00092  Score=64.28  Aligned_cols=58  Identities=29%  Similarity=0.648  Sum_probs=38.3

Q ss_pred             eCCCCCCCeeeeccCCCcc---------CcccCCcC-ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-eCCCCc
Q 031166           78 IDNAYDFPIFGAGQARKYS---------AMLPLQWL-RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-TCTTCQ  146 (164)
Q Consensus        78 ~~Ca~~~~C~GsGa~~gs~---------~~~~~~~~-~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-~C~~C~  146 (164)
                      ..|   +.|+|+|-...-.         ..--+-.+ -..|+.|+|+|.|++        ..+|+.|+|+|++ +|..|.
T Consensus        19 e~c---~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v--------~~~c~~c~G~gkv~~c~~cG   87 (715)
T COG1107          19 EEC---PVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV--------YDTCPECGGTGKVLTCDICG   87 (715)
T ss_pred             eec---ccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE--------EeecccCCCceeEEeecccc
Confidence            348   9999999762110         00000111 237999999999985        4789999999999 455553

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.98  E-value=0.00037  Score=62.03  Aligned_cols=41  Identities=29%  Similarity=0.754  Sum_probs=33.4

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|....      ....+|+.|+|.|.+           +|+.|+|+|++.
T Consensus       145 ~~C~~C~G~G~~~~------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  196 (373)
T PRK14301        145 VTCDDCGGSGAAPG------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI  196 (373)
T ss_pred             ccCCCCCCcccCCC------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence            48999999998531      123679999999976           699999999874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.97  E-value=0.00039  Score=61.62  Aligned_cols=42  Identities=40%  Similarity=0.942  Sum_probs=33.5

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...    +  ....+|+.|+|.|.+               +|+.|+|+|++.
T Consensus       152 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  208 (369)
T PRK14282        152 YETCPHCGGTGVEP----G--SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP  208 (369)
T ss_pred             cccCCCCCccCCCC----C--CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence            34899999999843    1  134689999999975               599999999874

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.96  E-value=0.00044  Score=61.16  Aligned_cols=42  Identities=33%  Similarity=0.779  Sum_probs=33.7

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|.....      ....|+.|+|.|.+           +|+.|+|+|++.
T Consensus       142 ~~~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  194 (371)
T PRK10767        142 LVTCDTCHGSGAKPGT------SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII  194 (371)
T ss_pred             cccCCCCCCcccCCCC------CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC
Confidence            3489999999975311      23689999999986           599999999974

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.95  E-value=0.00039  Score=61.79  Aligned_cols=40  Identities=38%  Similarity=0.874  Sum_probs=32.9

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|...    +   ...+|+.|+|.|.+           +|+.|.|+|++.
T Consensus       141 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  191 (369)
T PRK14288        141 SVCESCDGTGAKD----K---ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII  191 (369)
T ss_pred             ccCCCCCCcccCC----C---CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc
Confidence            3899999999743    2   23689999999976           599999999874

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.95  E-value=0.00036  Score=62.18  Aligned_cols=41  Identities=37%  Similarity=0.897  Sum_probs=33.0

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|...    +  ....+|+.|+|.|.+               +|+.|+|+|.+.
T Consensus       147 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  202 (380)
T PRK14276        147 ATCHTCNGSGAKP----G--TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI  202 (380)
T ss_pred             ccCCCCcCcccCC----C--CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence            4899999999742    1  234689999999975               599999999874

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.91  E-value=0.00046  Score=61.80  Aligned_cols=42  Identities=33%  Similarity=0.892  Sum_probs=33.9

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...    +  ....+|+.|+|.|.+           +|+.|+|+|.+.
T Consensus       166 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  218 (389)
T PRK14295        166 QAPCPACSGTGAKN----G--TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA  218 (389)
T ss_pred             cccCCCCcccccCC----C--CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe
Confidence            34799999999853    1  234689999999975           699999999874

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.90  E-value=0.00042  Score=61.54  Aligned_cols=41  Identities=37%  Similarity=0.767  Sum_probs=33.0

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|...    +  .....|+.|+|.|.+           +|+.|+|+|.+.
T Consensus       147 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~  198 (365)
T PRK14285        147 MLCESCLGKKSEK----G--TSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII  198 (365)
T ss_pred             ccCCCCCCcccCC----C--CCCccCCCccCceeEEecCceeEEeeecCCCCCccccc
Confidence            4899999999742    1  223679999999965           699999999874

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.90  E-value=0.00049  Score=61.24  Aligned_cols=41  Identities=37%  Similarity=0.851  Sum_probs=33.2

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|...    +.  ...+|+.|+|.|.+               +|+.|+|+|.+.
T Consensus       149 ~~C~~C~G~G~~~----~~--~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  204 (380)
T PRK14297        149 ENCETCNGTGAKP----GT--SPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI  204 (380)
T ss_pred             ccCCCcccccccC----CC--cCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence            4799999999852    21  24789999999965               599999999874

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.88  E-value=0.00045  Score=61.45  Aligned_cols=41  Identities=34%  Similarity=0.813  Sum_probs=32.9

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|...      -....+|+.|+|.|.+               +|+.|+|+|.+.
T Consensus       139 ~~C~~C~G~G~~~------~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  194 (371)
T PRK14287        139 ETCGTCHGSGAKP------GTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII  194 (371)
T ss_pred             ccCCCCCCcccCC------CCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence            4899999999753      1234679999999964               599999999874

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.86  E-value=0.0005  Score=62.57  Aligned_cols=43  Identities=33%  Similarity=0.707  Sum_probs=34.0

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeeccc
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQPRY  154 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~~~  154 (164)
                      ...|+.|+|+|..    .+   ...+|+.|+|.|.+               +|+.|+|+|++..+
T Consensus       150 ~~~C~~C~G~G~~----~~---~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~  207 (421)
T PTZ00037        150 DVICANCEGHGGP----KD---AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE  207 (421)
T ss_pred             cccccccCCCCCC----CC---CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc
Confidence            3489999999962    12   34689999999952               79999999998654

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.85  E-value=0.00056  Score=56.76  Aligned_cols=25  Identities=44%  Similarity=0.930  Sum_probs=13.6

Q ss_pred             eeeCCCCCcccee-----eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL-----TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki-----~C~~C~G~G~v~  152 (164)
                      ..+|+.|+|+|++     +|++|+|+|++.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~  128 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFR  128 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence            3445555555554     266666666654

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.82  E-value=0.00055  Score=60.90  Aligned_cols=41  Identities=37%  Similarity=0.903  Sum_probs=32.8

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|...    +  ....+|+.|+|.|.+               +|+.|+|+|.+.
T Consensus       144 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  199 (376)
T PRK14280        144 ETCDTCHGSGAKP----G--TSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI  199 (376)
T ss_pred             ccCCCCCCcccCC----C--CCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence            4799999999743    1  134679999999964               699999999874

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.78  E-value=0.00074  Score=59.80  Aligned_cols=41  Identities=32%  Similarity=0.756  Sum_probs=33.5

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|.....      ...+|+.|+|.|.+           +|+.|+|+|++.
T Consensus       145 ~~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~  196 (366)
T PRK14294        145 ETCEECHGSGCEPGT------SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI  196 (366)
T ss_pred             ccCCCCCCccccCCC------CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec
Confidence            479999999985321      24689999999975           699999999974

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.76  E-value=0.00072  Score=60.38  Aligned_cols=42  Identities=31%  Similarity=0.709  Sum_probs=33.6

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...-      ....+|+.|+|.|.+               +|+.|+|+|.+.
T Consensus       155 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  211 (386)
T PRK14277        155 FEKCDVCKGSGAKPG------SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII  211 (386)
T ss_pred             eccCCCCCCCCcCCC------CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec
Confidence            348999999998531      124689999999975               599999999984

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.70  E-value=0.0008  Score=60.00  Aligned_cols=41  Identities=37%  Similarity=0.775  Sum_probs=32.8

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceee
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQ  151 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v  151 (164)
                      ...|+.|+|+|...-      ....+|+.|+|.|.+           +|+.|+|+|.+
T Consensus       156 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  207 (382)
T PRK14291        156 YVPCEACGGTGYDPG------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL  207 (382)
T ss_pred             eccCCCCccccCCCC------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence            348999999997431      134679999999976           69999999965

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.70  E-value=0.00084  Score=58.85  Aligned_cols=42  Identities=38%  Similarity=0.812  Sum_probs=33.3

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|....      ....+|+.|+|.|.+               +|+.|.|+|++.
T Consensus       143 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  199 (354)
T TIGR02349       143 KESCETCHGTGAKPG------TDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII  199 (354)
T ss_pred             CCcCCCCCCCCCCCC------CCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec
Confidence            348999999997531      124689999999964               599999999974

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.68  E-value=0.00075  Score=60.09  Aligned_cols=42  Identities=38%  Similarity=0.805  Sum_probs=33.8

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|....      .....|+.|+|.|.+               +|+.|.|+|.+.
T Consensus       154 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  210 (386)
T PRK14289        154 YVPCSHCHGTGAEGN------NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII  210 (386)
T ss_pred             ecccCCCCCCCCCCC------CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc
Confidence            348999999997532      234779999999886               599999999874

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.64  E-value=0.0011  Score=55.00  Aligned_cols=13  Identities=38%  Similarity=0.861  Sum_probs=6.7

Q ss_pred             ccCCCCcccEEEE
Q 031166          107 SCRFCMGTGSVTV  119 (164)
Q Consensus       107 tC~~C~GtG~V~~  119 (164)
                      .|+.|+|+|++..
T Consensus       117 ~C~~C~G~G~v~~  129 (186)
T TIGR02642       117 ECDTCAGTGRFRP  129 (186)
T ss_pred             CCCCCCCccEEee
Confidence            4555555555443

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.64  E-value=0.00093  Score=59.18  Aligned_cols=40  Identities=43%  Similarity=0.959  Sum_probs=32.6

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|.-.    +   ...+|+.|+|.|.+               +|+.|.|.|++.
T Consensus       150 ~~C~~C~G~g~~~----~---~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~  204 (365)
T PRK14290        150 AMCPDCSGTGAKN----G---KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP  204 (365)
T ss_pred             ccCCCCccccCCC----C---CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc
Confidence            4799999999732    2   34689999999952               799999999874

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.55  E-value=0.0011  Score=59.38  Aligned_cols=40  Identities=43%  Similarity=0.929  Sum_probs=32.9

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|.-.    +   ...+|+.|+|.|.+               +|+.|+|+|++.
T Consensus       164 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  218 (397)
T PRK14281        164 VPCKECNGTGSKT----G---ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV  218 (397)
T ss_pred             ecCCCCCCcccCC----C---CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee
Confidence            4799999999742    2   24689999999965               599999999874

>PRK14283 chaperone protein DnaJ; Provisional

Probab=96.48  E-value=0.0014  Score=58.26  Aligned_cols=41  Identities=37%  Similarity=0.860  Sum_probs=33.0

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|...    +  ....+|+.|+|.|.+               +|.+|+|+|++.
T Consensus       147 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  202 (378)
T PRK14283        147 KKCPVCNGSRAEP----G--SEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV  202 (378)
T ss_pred             ccCCCCCccccCC----C--CCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec
Confidence            4799999999743    1  134679999999885               599999999873

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.45  E-value=0.0018  Score=57.61  Aligned_cols=42  Identities=36%  Similarity=0.844  Sum_probs=33.4

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|.-.    +  ....+|+.|+|.|.+               +|..|.|.|++.
T Consensus       143 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  199 (374)
T PRK14293        143 LETCETCRGSGAKP----G--TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI  199 (374)
T ss_pred             cccCCCCCCcCCCC----C--CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe
Confidence            34899999999743    1  133689999999974               599999999973

>PRK14292 chaperone protein DnaJ; Provisional

Probab=96.08  E-value=0.0027  Score=56.23  Aligned_cols=43  Identities=28%  Similarity=0.709  Sum_probs=33.5

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|.-.-     -....+|+.|+|.|.+               +|..|+|.|+..
T Consensus       139 ~~~C~~C~G~G~~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  196 (371)
T PRK14292        139 LTECEHCHGSRTEPG-----GKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII  196 (371)
T ss_pred             eecCCCCcccccCCC-----CCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence            347999999997421     1124779999999976               499999999975

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.018  Score=50.76  Aligned_cols=48  Identities=27%  Similarity=0.585  Sum_probs=38.5

Q ss_pred             CCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCc
Q 031166           84 FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQ  146 (164)
Q Consensus        84 ~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~  146 (164)
                      ..|.|.+-.              .|..|||+=++..+ ........+|+.|+-.|-+.|+.|.
T Consensus       233 ~~CGg~rFl--------------pC~~C~GS~kv~~~-~~~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  233 ESCGGARFL--------------PCSNCHGSCKVHEE-EEDDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CCcCCcceE--------------ecCCCCCceeeeee-ccCCCcEEECcccCCCCceeCCccC
Confidence            666666665              79999999998773 2334566899999999999999996

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=94.79  E-value=0.027  Score=44.80  Aligned_cols=45  Identities=27%  Similarity=0.460  Sum_probs=33.2

Q ss_pred             CCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeC
Q 031166           84 FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTC  142 (164)
Q Consensus        84 ~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C  142 (164)
                      ..|.|.+-.              .|..|+|+=++............+|+.|+-.|-+.|
T Consensus       103 ~~Cgg~rfv--------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031         103 EGCGGARFV--------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CCCCCcCeE--------------ECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence            888888777              799999999987654212334578888888887765

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=93.69  E-value=0.028  Score=48.52  Aligned_cols=28  Identities=43%  Similarity=0.685  Sum_probs=23.2

Q ss_pred             eeeeeCCCCCccceeeCCCCcCceeecc
Q 031166          126 REFSKCINCDGVGSLTCTTCQGTGIQPR  153 (164)
Q Consensus       126 ~~~~~C~~C~G~Gki~C~~C~G~G~v~~  153 (164)
                      ....+|..-.|.+.++||+|+|+|+|++
T Consensus        25 ~~~~py~e~~g~~~vtCPTCqGtGrIP~   52 (238)
T PF07092_consen   25 ISSFPYVEFTGRDSVTCPTCQGTGRIPR   52 (238)
T ss_pred             cccCccccccCCCCCcCCCCcCCccCCc
Confidence            3456777788889999999999999985

The function of this family is unknown.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=91.17  E-value=0.15  Score=51.10  Aligned_cols=38  Identities=24%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             ccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCcCceeecccc
Q 031166          107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYL  155 (164)
Q Consensus       107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~G~G~v~~~l  155 (164)
                      .|+.|.|.|++..........           .++|+.|+|+.+.+.-|
T Consensus       738 ~C~~C~G~G~~~~~~~f~~~~-----------~~~C~~C~G~R~~~e~l  775 (924)
T TIGR00630       738 RCEACQGDGVIKIEMHFLPDV-----------YVPCEVCKGKRYNRETL  775 (924)
T ss_pred             CCCCCccceEEEEEccCCCCc-----------ccCCCCcCCceeChHHH
Confidence            577888888777654111111           23577777776665443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=89.22  E-value=0.25  Score=49.57  Aligned_cols=37  Identities=22%  Similarity=0.573  Sum_probs=21.2

Q ss_pred             ccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCcCceeeccc
Q 031166          107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRY  154 (164)
Q Consensus       107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~G~G~v~~~  154 (164)
                      .|+.|.|.|.+............           +|+.|+|+.+.+.-
T Consensus       740 ~C~~C~G~G~~~~~~~f~~~~~~-----------~C~~C~G~R~~~e~  776 (943)
T PRK00349        740 RCEACQGDGVIKIEMHFLPDVYV-----------PCDVCKGKRYNRET  776 (943)
T ss_pred             CCCcccccceEEEEeccCCCccc-----------cCccccCccccccc
Confidence            48888888887765411111222           56666666665543

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=87.56  E-value=0.25  Score=49.55  Aligned_cols=12  Identities=33%  Similarity=0.731  Sum_probs=7.8

Q ss_pred             ccCCCCcccEEE
Q 031166          107 SCRFCMGTGSVT  118 (164)
Q Consensus       107 tC~~C~GtG~V~  118 (164)
                      .|+.|.|.|.+.
T Consensus       276 ~Cp~C~G~G~~~  287 (924)
T TIGR00630       276 ACPECSGLGIKQ  287 (924)
T ss_pred             CCCCCccceeee
Confidence            477777777653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=86.55  E-value=0.3  Score=44.15  Aligned_cols=50  Identities=24%  Similarity=0.454  Sum_probs=30.1

Q ss_pred             CCeeeeccCCCccCccc-C-CcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee
Q 031166           84 FPIFGAGQARKYSAMLP-L-QWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL  140 (164)
Q Consensus        84 ~~C~GsGa~~gs~~~~~-~-~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki  140 (164)
                      ..|.|+|.+.....+-+ | +..-..|..|+|+|..       +...-.|+.|.|.+.+
T Consensus       147 ~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~-------~~~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  147 TTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGET-------ISLKDRCKTCSGAKVV  198 (337)
T ss_pred             CCCCCCCceeEEEeccccccccceeEeccCCCcccc-------ccccccCcccccchhh
Confidence            77888887643322211 1 1123468888888875       2234678888888876

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=85.34  E-value=0.54  Score=50.39  Aligned_cols=15  Identities=27%  Similarity=0.581  Sum_probs=11.6

Q ss_pred             ccCCCCcccEEEEEe
Q 031166          107 SCRFCMGTGSVTVEL  121 (164)
Q Consensus       107 tC~~C~GtG~V~~~~  121 (164)
                      .|+.|.|.|++....
T Consensus      1609 rC~~C~G~G~i~i~m 1623 (1809)
T PRK00635       1609 QCSDCWGLGYQWIDR 1623 (1809)
T ss_pred             CCCCCccCceEEEec
Confidence            588888888887764

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=84.75  E-value=0.79  Score=46.21  Aligned_cols=30  Identities=27%  Similarity=0.668  Sum_probs=18.6

Q ss_pred             ccCCCCcccEEEEEeCCceeeeeeCCCCCc
Q 031166          107 SCRFCMGTGSVTVELGGDEREFSKCINCDG  136 (164)
Q Consensus       107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G  136 (164)
                      .|..|.|.|.+.++...--..+.+|+.|+|
T Consensus       732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~G  761 (935)
T COG0178         732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHG  761 (935)
T ss_pred             CCccccCCceEEEEeccCCCceeeCCCcCC
Confidence            688888888877765333334555555555

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=82.23  E-value=1  Score=35.82  Aligned_cols=12  Identities=25%  Similarity=0.839  Sum_probs=6.7

Q ss_pred             eCCCCcCceeec
Q 031166          141 TCTTCQGTGIQP  152 (164)
Q Consensus       141 ~C~~C~G~G~v~  152 (164)
                      .|+.|+=.|.++
T Consensus       135 rC~~Cnengl~~  146 (147)
T cd03031         135 RCPECNENGLVR  146 (147)
T ss_pred             ECCCCCcccccc
Confidence            466666555543

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=82.07  E-value=0.69  Score=46.55  Aligned_cols=13  Identities=31%  Similarity=0.616  Sum_probs=9.7

Q ss_pred             ccCCCCcccEEEE
Q 031166          107 SCRFCMGTGSVTV  119 (164)
Q Consensus       107 tC~~C~GtG~V~~  119 (164)
                      .|+.|+|.|.+..
T Consensus       278 ~Cp~C~G~G~~~~  290 (943)
T PRK00349        278 ACPTCDGLGVKLE  290 (943)
T ss_pred             CCCcCCCceeEee
Confidence            5888888887654

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=80.80  E-value=2.8  Score=27.65  Aligned_cols=11  Identities=36%  Similarity=0.945  Sum_probs=9.5

Q ss_pred             ccCCCCcccEE
Q 031166          107 SCRFCMGTGSV  117 (164)
Q Consensus       107 tC~~C~GtG~V  117 (164)
                      .||+|+|....
T Consensus         3 PCPfCGg~~~~   13 (53)
T TIGR03655         3 PCPFCGGADVY   13 (53)
T ss_pred             CCCCCCCccee
Confidence            69999998883

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.84
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.74
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.62
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	98.25
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.24
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.77
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.76
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.52
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.18
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.69
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.52
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	96.42
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	93.66
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	89.83
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	81.82

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2.5e-22  Score=146.82  Aligned_cols=89  Identities=22%  Similarity=0.402  Sum_probs=80.9

Q ss_pred             ceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeC
Q 031166           52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKC  131 (164)
Q Consensus        52 ~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C  131 (164)
                      +..+.|.|+|+||++|++++|.|++.+.|   +.|+|+|+++++        .+.+|+.|+|+|++...+ |.|+.+++|
T Consensus         3 ~~~~~l~vslee~~~G~~~~i~~~~~~~C---~~C~G~G~~~g~--------~~~~C~~C~G~G~~~~~~-G~~~~~~~C   70 (104)
T 2ctt_A            3 SGSSGMELTFNQAAKGVNKEFTVNIMDTC---ERCNGKGNEPGT--------KVQHCHYCGGSGMETINT-GPFVMRSTC   70 (104)
T ss_dssp             CCCCCCCCCCSSCCSSSCTTCCSSCCEEC---SSSSSSSSCTTC--------CCEECSSSSSSCEEEEEE-TTEEEEEEC
T ss_pred             ceEEEEEEEHHHHcCCCEEEEEeeeeeEC---CCCcCCccCCCC--------CCccCCCCCCCEEEEEEe-CCEEEEEEC
Confidence            34567889999999999999999999999   999999999875        466999999999998776 778899999


Q ss_pred             CCCCcccee---eCCCCcCceeec
Q 031166          132 INCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       132 ~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      +.|+|.|++   +|+.|+|.|+++
T Consensus        71 ~~C~G~G~~i~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           71 RRCGGRGSIIISPCVVCRGAGQAK   94 (104)
T ss_dssp             SSSSSSSEECSSCCSSSSSCSEEC
T ss_pred             CcCCCcceECCCcCCCCCCeeEEE
Confidence            999999999   799999999985

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.74  E-value=2.5e-18  Score=142.73  Aligned_cols=90  Identities=24%  Similarity=0.399  Sum_probs=78.9

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCc--eee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGD--ERE  127 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~--~~~  127 (164)
                      +|..+.|.|+|+||++|.+++|.|.+.+.|   +.|+|+|+++++         ..+|+.|+|+|++...+ .|.  ++.
T Consensus        12 ~d~~~~l~vslee~~~G~~k~i~~~r~~~C---~~C~G~G~~~g~---------~~~C~~C~G~G~~~~~~~~g~~~~~~   79 (248)
T 1nlt_A           12 KDIKHEISASLEELYKGRTAKLALNKQILC---KECEGRGGKKGA---------VKKCTSCNGQGIKFVTRQMGPMIQRF   79 (248)
T ss_dssp             CCEEEEEEECTTHHHHCEEEEEEEEEEEEC---TTTTTCSBSTTT---------CCCCTTSSSSSCEEEEEESSSEEEEE
T ss_pred             CCEEEEEEecHHHhcCCceEEEEeeEEEeC---CCCcCccCCCCC---------CccCCCCCCCcEEEEEEecCceEEEE
Confidence            578899999999999999999999999999   999999999875         36999999999986643 443  357


Q ss_pred             eeeCCCCCcccee-----eCCCCcCceeec
Q 031166          128 FSKCINCDGVGSL-----TCTTCQGTGIQP  152 (164)
Q Consensus       128 ~~~C~~C~G~Gki-----~C~~C~G~G~v~  152 (164)
                      +++|+.|+|.|++     +|+.|+|.|++.
T Consensus        80 ~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           80 QTECDVCHGTGDIIDPKDRCKSCNGKKVEN  109 (248)
T ss_dssp             ECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             EEcCCCCCCcCEEeccCCCCcccCCCceEe
Confidence            7899999999976     699999999975

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.62  E-value=1.2e-16  Score=110.57  Aligned_cols=75  Identities=28%  Similarity=0.497  Sum_probs=66.4

Q ss_pred             ecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---eCC
Q 031166           67 GIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---TCT  143 (164)
Q Consensus        67 G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---~C~  143 (164)
                      |.+++|.|++.+.|   +.|+|+|+.++.        ...+|+.|+|+|++...+ |.|+...+|+.|+|.|++   +|+
T Consensus         1 G~~~~i~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~~~~C~   68 (79)
T 1exk_A            1 GVTKEIRIPTLEEC---DVCHGSGAKPGT--------QPQTCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTLIKDPCN   68 (79)
T ss_dssp             CTTTSCCCCCEEEC---GGGTTTSBCSSS--------CCEECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEECSSBCG
T ss_pred             CcEEEEEcccceEC---CCCcccccCCCc--------cCCCCCCCcCeEEEEEEc-CCCEEeeECcCCCCccEECCCcCC
Confidence            67788999999999   999999998654        345899999999988766 778888999999999999   899


Q ss_pred             CCcCceeecc
Q 031166          144 TCQGTGIQPR  153 (164)
Q Consensus       144 ~C~G~G~v~~  153 (164)
                      .|+|.|+++.
T Consensus        69 ~C~G~G~~~~   78 (79)
T 1exk_A           69 KCHGHGRVER   78 (79)
T ss_dssp             GGTTSSEEEC
T ss_pred             CCCCeEEEee
Confidence            9999999853

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=98.25  E-value=5.8e-09  Score=98.04  Aligned_cols=90  Identities=10%  Similarity=0.040  Sum_probs=66.7

Q ss_pred             ceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEE-----------
Q 031166           52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVE-----------  120 (164)
Q Consensus        52 ~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~-----------  120 (164)
                      ...+.++|+|+||++|++++|+|.+.+.|   ..|+|+|+++|+..     .++++|+.|||+......           
T Consensus       166 ~~~~~l~i~feeA~~G~~k~i~v~~~~~C---~tCHGsGA~~Gt~~-----~~~~tC~tCHGs~~~~~~~~~~~~~iH~i  237 (669)
T 3pmq_A          166 LPITNQHYDWQSSGNMLAYTRNLVSIDTC---NSCHSNLAFHGGRY-----NQVETCVTCHNSKKVSNAADIFPQMIHSK  237 (669)
T ss_dssp             CCSCCCEEEEECSSSSCCCCCCCCCSHHH---HHHHSSCCTTTTTS-----CSSSCSTTTSSTTTCCCSSCSHHHHHHHH
T ss_pred             cceEEEEEEhHHhhCCCceEEEeccCCcC---CCCCCCCCcCCccC-----cCCccCCCCCCCcccCCccccccceeeee
Confidence            34688999999999999999999999999   99999999987510     146799999999422110           


Q ss_pred             eCCce-eeeeeCCCCCccce----------e----eCCCCcCce
Q 031166          121 LGGDE-REFSKCINCDGVGS----------L----TCTTCQGTG  149 (164)
Q Consensus       121 ~~G~~-~~~~~C~~C~G~Gk----------i----~C~~C~G~G  149 (164)
                      ..|.| +....|..|+..+.          +    .|..|+...
T Consensus       238 H~G~fP~~~~~C~~CH~~~~~la~~~~w~~~ps~~aC~sCH~~~  281 (669)
T 3pmq_A          238 HLTGFPQSISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQI  281 (669)
T ss_dssp             TTSSCSSCTTCCTTTSCCCTTCCSCSCTTTCCCHHHHHHHCCSC
T ss_pred             eccCCCCccCcchhhcCCccccccccccccCCchhhhhhccCCc
Confidence            11222 34567888888876          1    488888644

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.24  E-value=2.8e-07  Score=63.13  Aligned_cols=42  Identities=33%  Similarity=0.790  Sum_probs=34.7

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ..+|+.|+|+|...      .....+|+.|+|.|++           +|+.|+|+|++.
T Consensus        11 ~~~C~~C~G~G~~~------~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A           11 LEECDVCHGSGAKP------GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EEECGGGTTTSBCS------SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             ceECCCCcccccCC------CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence            45899999999743      2235799999999975           799999999985

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.77  E-value=1.4e-05  Score=53.11  Aligned_cols=26  Identities=35%  Similarity=0.825  Sum_probs=22.1

Q ss_pred             eeeeCCCCCcccee---eCCCCcCceeec
Q 031166          127 EFSKCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       127 ~~~~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      ..++|++|+|+|++   +|+.|+|+|++.
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            35789999999987   799999999976

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=7.2e-06  Score=59.29  Aligned_cols=42  Identities=33%  Similarity=0.744  Sum_probs=33.8

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...    |  ....+|+.|+|.|.+           +|+.|+|+|++.
T Consensus        28 ~~~C~~C~G~G~~~----g--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i   80 (104)
T 2ctt_A           28 MDTCERCNGKGNEP----G--TKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII   80 (104)
T ss_dssp             CEECSSSSSSSSCT----T--CCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred             eeECCCCcCCccCC----C--CCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence            35899999999631    2  234789999999965           699999999975

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.52  E-value=5.1e-05  Score=50.34  Aligned_cols=23  Identities=30%  Similarity=0.990  Sum_probs=11.9

Q ss_pred             eCCCCCcccee---eCCCCcCceeec
Q 031166          130 KCINCDGVGSL---TCTTCQGTGIQP  152 (164)
Q Consensus       130 ~C~~C~G~Gki---~C~~C~G~G~v~  152 (164)
                      +|+.|+|+|++   +|+.|+|+|++.
T Consensus        11 ~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A           11 ACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             ECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             cCCCCcceeccCCCCCccCCCCccEE
Confidence            44444444444   566666666554

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.18  E-value=7.5e-05  Score=61.66  Aligned_cols=40  Identities=38%  Similarity=0.847  Sum_probs=33.0

Q ss_pred             cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      ..|+.|+|+|..    .|.   ..+|+.|+|+|.+               +|+.|+|+|.+.
T Consensus        39 ~~C~~C~G~G~~----~g~---~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i   93 (248)
T 1nlt_A           39 ILCKECEGRGGK----KGA---VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII   93 (248)
T ss_dssp             EECTTTTTCSBS----TTT---CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred             EeCCCCcCccCC----CCC---CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe
Confidence            389999999974    243   3899999999963               699999999876

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.69  E-value=0.00044  Score=45.77  Aligned_cols=25  Identities=28%  Similarity=0.759  Sum_probs=13.4

Q ss_pred             ccCCCCcccEEEEEeCCceeeeeeCCCCCcccee
Q 031166          107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL  140 (164)
Q Consensus       107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki  140 (164)
                      +|+.|+|+|.+.         ..+|++|+|.|++
T Consensus        11 ~C~~C~GsG~~~---------~~~C~~C~G~G~v   35 (53)
T 2bx9_A           11 ACPKCERAGEIE---------GTPCPACSGKGVI   35 (53)
T ss_dssp             ECTTTTTSSEET---------TEECTTTTTSSEE
T ss_pred             cCCCCcceeccC---------CCCCccCCCCccE
Confidence            555555555542         1455555555554

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.52  E-value=0.00066  Score=44.89  Aligned_cols=25  Identities=32%  Similarity=0.761  Sum_probs=12.9

Q ss_pred             ccCCCCcccEEEEEeCCceeeeeeCCCCCcccee
Q 031166          107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL  140 (164)
Q Consensus       107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki  140 (164)
                      +|+.|+|+|++.         ..+|+.|+|.|.+
T Consensus        11 ~C~~C~GsG~~i---------~~~C~~C~G~G~v   35 (53)
T 3lcz_A           11 TCPNCNGSGREE---------PEPCPKCLGKGVI   35 (53)
T ss_dssp             ECTTTTTSCEET---------TEECTTTTTSSEE
T ss_pred             cCcCCcccccCC---------CCcCCCCCCcEEE
Confidence            455555555542         1445555555554

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=96.42  E-value=0.0013  Score=51.81  Aligned_cols=26  Identities=12%  Similarity=0.070  Sum_probs=21.0

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEe
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYET   76 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~   76 (164)
                      ++..+.+.|+|+||++|++++|.+.+
T Consensus         3 ~d~~~~l~islee~~~G~~k~i~i~~   28 (181)
T 3agx_A            3 PPVTHDLRVSLEEIYSGCTKKMKISH   28 (181)
T ss_dssp             ---CEEEEECHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEHHHhcCCcEEEEEEec
Confidence            46778999999999999999998764

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=93.66  E-value=0.021  Score=44.70  Aligned_cols=30  Identities=17%  Similarity=0.030  Sum_probs=28.1

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeeeCC
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDN   80 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~C   80 (164)
                      +|..+.+.|+|+||++|.+++|.+.+.+.|
T Consensus         4 ~d~~~~l~islee~~~G~~k~i~~~~~~~c   33 (180)
T 2q2g_A            4 RSHEVPLLVTLEELYLGKRKKIKVTRKRFI   33 (180)
T ss_dssp             CEEEEEEEECHHHHHHCEEEEEEEEEEEEE
T ss_pred             CCEEEEEEeeHHHhcCCcEEEEEEeEEEec
Confidence            577899999999999999999999999888

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=89.83  E-value=0.12  Score=40.03  Aligned_cols=26  Identities=19%  Similarity=0.179  Sum_probs=23.7

Q ss_pred             ceEEEEEEeceeeeeecceEEEEEee
Q 031166           52 NTVVAISVGLVSVAVGIGIPIFYETQ   77 (164)
Q Consensus        52 ~T~v~i~i~f~eaa~G~~~~i~~e~~   77 (164)
                      |..+.+.|+|+||++|.+++|.+.+.
T Consensus         2 d~~~~l~islee~~~G~~k~i~~~~~   27 (170)
T 1c3g_A            2 TVQVNLPVSLEDLFVGKKKSFKIGRK   27 (170)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEEE
T ss_pred             CEEEEEEeEHHHhhCCcEEEEEEEEe
Confidence            56789999999999999999999875

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=81.82  E-value=1.2  Score=29.27  Aligned_cols=27  Identities=26%  Similarity=0.677  Sum_probs=14.8

Q ss_pred             cceeeCCCCcCceeecccc----CCCcccCCC
Q 031166          137 VGSLTCTTCQGTGIQPRYL----DRREFKDDD  164 (164)
Q Consensus       137 ~Gki~C~~C~G~G~v~~~l----~~~~~~~~~  164 (164)
                      .|.+.|..|+ .=...+-+    ++|.|-+||
T Consensus        28 ~ge~vC~~CG-lVl~e~~iD~gpEWR~F~~~~   58 (58)
T 1dl6_A           28 AGDMICPECG-LVVGDRVIDVGSEWRTFSNDK   58 (58)
T ss_dssp             SCCEECTTTC-CEECCSCCCCCCSCCCSCCCC
T ss_pred             CCeEEeCCCC-CEEeccccccCCcccccCCCC
Confidence            4566788882 22222333    567776664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.71
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.49
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.94
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.75
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	97.38
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	91.35
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	89.3

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=8.9e-19  Score=121.85  Aligned_cols=75  Identities=28%  Similarity=0.497  Sum_probs=67.6

Q ss_pred             ecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---eCC
Q 031166           67 GIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---TCT  143 (164)
Q Consensus        67 G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---~C~  143 (164)
                      |++++|.|++++.|   +.|+|+|+++++        ++.+|+.|+|+|++.... |.|+..++|+.|+|.|++   +|+
T Consensus         1 G~~k~i~i~~~~~C---~~C~G~G~~~g~--------~~~~C~~C~G~G~v~~~~-g~~~~~~~C~~C~G~G~~i~~~C~   68 (79)
T d1exka_           1 GVTKEIRIPTLEEC---DVCHGSGAKPGT--------QPQTCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTLIKDPCN   68 (79)
T ss_dssp             CTTTSCCCCCEEEC---GGGTTTSBCSSS--------CCEECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEECSSBCG
T ss_pred             CceEEEEeeeeccC---CCCcCcccCCCc--------cceeCCCccceeEEEEec-ccceeeEECcccCcceeECCCCCC
Confidence            78899999999999   999999999775        467899999999987655 778888999999999999   799


Q ss_pred             CCcCceeecc
Q 031166          144 TCQGTGIQPR  153 (164)
Q Consensus       144 ~C~G~G~v~~  153 (164)
                      .|+|+|++++
T Consensus        69 ~C~G~G~v~k   78 (79)
T d1exka_          69 KCHGHGRVER   78 (79)
T ss_dssp             GGTTSSEEEC
T ss_pred             CCCCceEeec
Confidence            9999999864

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=9.1e-15  Score=100.44  Aligned_cols=65  Identities=26%  Similarity=0.446  Sum_probs=54.3

Q ss_pred             eeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceeeeeeCCCCCcccee-----eCCCCcC
Q 031166           76 TQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDEREFSKCINCDGVGSL-----TCTTCQG  147 (164)
Q Consensus        76 ~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~~~~C~~C~G~Gki-----~C~~C~G  147 (164)
                      +.+.|   +.|+|+|+.+++         +.+|+.|+|+|++....   ++.++..++|+.|+|.|++     +|+.|+|
T Consensus         1 r~v~C---~~C~G~G~~~~~---------~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G   68 (74)
T d1nlta3           1 KQILC---KECEGRGGKKGA---------VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNG   68 (74)
T ss_dssp             EEEEC---TTTTTCSBSTTT---------CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTT
T ss_pred             CccCC---cCCcccccCCCC---------CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCC
Confidence            46789   999999998764         45899999999987753   3345577889999999987     6999999


Q ss_pred             ceeec
Q 031166          148 TGIQP  152 (164)
Q Consensus       148 ~G~v~  152 (164)
                      +|.++
T Consensus        69 ~g~v~   73 (74)
T d1nlta3          69 KKVEN   73 (74)
T ss_dssp             SCEEE
T ss_pred             eeEeC
Confidence            99875

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=1e-06  Score=59.88  Aligned_cols=42  Identities=36%  Similarity=0.849  Sum_probs=34.2

Q ss_pred             ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166          105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  152 (164)
Q Consensus       105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~  152 (164)
                      ...|+.|+|+|...    +  ....+|+.|+|.|++           +|+.|+|+|++.
T Consensus        11 ~~~C~~C~G~G~~~----g--~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i   63 (79)
T d1exka_          11 LEECDVCHGSGAKP----G--TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EEECGGGTTTSBCS----S--SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             eccCCCCcCcccCC----C--ccceeCCCccceeEEEEecccceeeEECcccCcceeEC
Confidence            34899999999642    2  134689999999988           699999999985

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=1.4e-06  Score=58.80  Aligned_cols=39  Identities=38%  Similarity=0.888  Sum_probs=31.8

Q ss_pred             ccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166          107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  152 (164)
Q Consensus       107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~  152 (164)
                      .|+.|+|+|...    +.   ..+|+.|+|+|.+               +|+.|+|+|++.
T Consensus         4 ~C~~C~G~G~~~----~~---~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i   57 (74)
T d1nlta3           4 LCKECEGRGGKK----GA---VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII   57 (74)
T ss_dssp             ECTTTTTCSBST----TT---CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred             CCcCCcccccCC----CC---CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEe
Confidence            799999999642    32   2579999999976               599999999764

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=97.38  E-value=8.9e-07  Score=60.14  Aligned_cols=65  Identities=15%  Similarity=0.268  Sum_probs=47.7

Q ss_pred             CCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceeeeeeCCCCCcccee---eCCCCcCceeecc
Q 031166           84 FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDEREFSKCINCDGVGSL---TCTTCQGTGIQPR  153 (164)
Q Consensus        84 ~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~~~~C~~C~G~Gki---~C~~C~G~G~v~~  153 (164)
                      ..|+|.|......     +..+.+|..|+|+|......   .+.+..-+.|..|.|.|+.   .|.+|++.|+.+.
T Consensus        15 ~~CH~~~~~~~~~-----~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~~   85 (90)
T d1m1qa_          15 ESCHKDGTPSADG-----AFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTSA   85 (90)
T ss_dssp             GGTSGGGCCCSSS-----HHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCHH
T ss_pred             CCcCCCCccccCC-----CCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcccc
Confidence            8999999764321     11345799999999764432   2445667889999999977   7999999998653

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.35  E-value=0.049  Score=35.35  Aligned_cols=28  Identities=18%  Similarity=0.177  Sum_probs=24.0

Q ss_pred             cceEEEEEEeceeeeeecceEEEEEeee
Q 031166           51 QNTVVAISVGLVSVAVGIGIPIFYETQI   78 (164)
Q Consensus        51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~   78 (164)
                      +|-.+.+.|+|+||+.|.++++.+.+..
T Consensus         5 ~di~~~l~isleea~~G~~~~~~~~~~~   32 (74)
T d1nlta1           5 KDIKHEISASLEELYKGRTAKLALNRKI   32 (74)
T ss_dssp             CCEEEEEEECTTHHHHCEEEEEEEEEEE
T ss_pred             CCEEEEEEecHHHHHhhcccceeecCcc
Confidence            4677899999999999999999887543

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.30  E-value=0.077  Score=34.65  Aligned_cols=27  Identities=19%  Similarity=0.117  Sum_probs=23.1

Q ss_pred             ceEEEEEEeceeeeeecceEEEEEeee
Q 031166           52 NTVVAISVGLVSVAVGIGIPIFYETQI   78 (164)
Q Consensus        52 ~T~v~i~i~f~eaa~G~~~~i~~e~~~   78 (164)
                      +=.+.|.|+|+||+.|..++|.+.+..
T Consensus         2 ~v~~~l~vtLee~~~G~~k~i~~~r~~   28 (80)
T d1c3ga1           2 TVQVNLPVSLEDLFVGKKKSFKIGRKG   28 (80)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEEEE
T ss_pred             CEEEEeEEEHHHHhCCCceEeecceec
Confidence            346889999999999999999988753