Citrus Sinensis ID: 031170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDDIKNTNN
Secondary Structure (PSIPRED)
cHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHccccc
Coil and Loop (DISEMBL)
MARLLSEMGKTQDARNVFEEIlagnplsfEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEleiedpndfrpyfcKGMIYSLLDRNAEAKEEFAKYrqlspkkfevegylrtplsrmklfgtnddikntnn
Flexible Loop (DISEMBL)
MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAedgnklkearDVRFIMAQIKFLQKNVDEALKSYQELeiedpndfrpYFCKGMIYSLLDRNAEAKEEFakyrqlspkkfevegylrtplsrmklfgtnddikntnn
Low Complexity Region (SEG)
MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDDIKNTNN
Disordered region (IsUnstruct)
***************NVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPL*****************
Disordered Region (DISOPRED)
MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND**K****
Disordered Region (DISEMBL)
**********TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDDIKNTNN
Disordered Region (DISPRO)
MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTN********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVxxxxxxxxxxxxxxxxxxxxxDVRFIMAQxxxxxxxxxxxxxxxxxxxxxDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDDIKNTNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
255555529	331	conserved hypothetical protein [Ricinus	0.963	0.477	0.822	1e-72
224101987	212	predicted protein [Populus trichocarpa]	0.957	0.740	0.834	4e-71
224101985	328	predicted protein [Populus trichocarpa]	0.957	0.478	0.828	8e-71
449463501	345	PREDICTED: uncharacterized protein LOC10	0.963	0.457	0.810	3e-70
224101981	159	predicted protein [Populus trichocarpa]	0.957	0.987	0.828	1e-69
224108155	338	predicted protein [Populus trichocarpa]	0.957	0.464	0.815	3e-69
147784212	475	hypothetical protein VITISV_000983 [Viti	0.963	0.332	0.778	2e-67
359473679	312	PREDICTED: uncharacterized protein LOC10	0.963	0.506	0.778	5e-67
297834748	320	tetratricopeptide repeat-containing prot	0.963	0.493	0.759	2e-64
18401882	316	tetratricopeptide repeat (TPR)-containin	0.963	0.5	0.753	5e-64

>gi|255555529|ref|XP_002518801.1| conserved hypothetical protein [Ricinus communis] gi|223542182|gb|EEF43726.1| conserved hypothetical protein [Ricinus communis]

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/158 (82%), Positives = 150/158 (94%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLL+EMG+TQDARN+FEEIL  NPLSFEALFENALLMDRCGEG+AVI+RL+EAL+IAE
Sbjct: 173 MARLLNEMGRTQDARNLFEEILQMNPLSFEALFENALLMDRCGEGDAVIRRLQEALDIAE 232

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           + NK+KEARDV+ IMAQI+FLQKNV+EALKSYQEL  EDP+DFRPYFC+GMIYSLLDRN 
Sbjct: 233 EENKVKEARDVKLIMAQIQFLQKNVEEALKSYQELSKEDPSDFRPYFCQGMIYSLLDRNE 292

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDD 158
           EA+E+FAKYRQLS KKFEVEGYLRTPLSRMK+FG+N++
Sbjct: 293 EAREQFAKYRQLSRKKFEVEGYLRTPLSRMKVFGSNEE 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101987|ref|XP_002312502.1| predicted protein [Populus trichocarpa] gi|222852322|gb|EEE89869.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 131/157 (83%), Positives = 144/157 (91%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLL+E G+ QDARNVFEEIL  NPLSFEALFENALLMDRCGEGEAVI+RL+ AL+IAE
Sbjct: 54  MARLLNETGRAQDARNVFEEILVANPLSFEALFENALLMDRCGEGEAVIRRLQGALDIAE 113

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           + NK+KEARDVR IMAQI FLQKNV+EALKSYQEL  EDP DFRPYFC+GMIYSLLDRN 
Sbjct: 114 EENKVKEARDVRLIMAQIHFLQKNVEEALKSYQELSKEDPEDFRPYFCRGMIYSLLDRNE 173

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND 157
           EAKE+FAKYR+LSPKKFEVEGYLRT LSRMKLFG+N+
Sbjct: 174 EAKEQFAKYRELSPKKFEVEGYLRTSLSRMKLFGSNE 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101985|ref|XP_002312501.1| predicted protein [Populus trichocarpa] gi|222852321|gb|EEE89868.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 130/157 (82%), Positives = 144/157 (91%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLLSEMG+ QDARNVFEEIL  NPLSFEALFENALLMDRCGEGEAVI+RL+EAL+IA 
Sbjct: 170 MARLLSEMGRVQDARNVFEEILVYNPLSFEALFENALLMDRCGEGEAVIRRLQEALDIAG 229

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           + NK+KEAR+VR IMAQI FLQKNV++ALKSYQEL  EDP DF PYFC+GMIYSLLDRN 
Sbjct: 230 EENKVKEARNVRLIMAQIHFLQKNVEKALKSYQELSKEDPKDFGPYFCRGMIYSLLDRNE 289

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND 157
           EAKE+FAKYR+LSPKKFEVEGYLRT LSRMKLFG+N+
Sbjct: 290 EAKEQFAKYRELSPKKFEVEGYLRTSLSRMKLFGSNE 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463501|ref|XP_004149472.1| PREDICTED: uncharacterized protein LOC101212982 [Cucumis sativus] gi|449526118|ref|XP_004170061.1| PREDICTED: uncharacterized LOC101212982 [Cucumis sativus]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/158 (81%), Positives = 147/158 (93%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLL EMGKT+ AR VFEEILA NPLSFEALFENALLMDRCGEGEAVI+RLEEAL IAE
Sbjct: 188 MARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLEEALRIAE 247

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           + NK KEARDV+ IMAQI+FLQKNV+EALKSY+EL  EDP+DFRPYFC+GMIYSLLD+N 
Sbjct: 248 NENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIYSLLDKNI 307

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDD 158
           EAK++FAKYR+LSPKKFEV+GYLRTPLSRMK+FG++++
Sbjct: 308 EAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 345

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101981|ref|XP_002312499.1| predicted protein [Populus trichocarpa] gi|222852319|gb|EEE89866.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/157 (82%), Positives = 144/157 (91%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLLSEMG+ QDARNVFEEIL  NPLSFEALFENALLMDRCGEGEAVI+RL+ AL+IA 
Sbjct: 1   MARLLSEMGRVQDARNVFEEILVYNPLSFEALFENALLMDRCGEGEAVIRRLQGALDIAG 60

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           + NK+KEARDVR IMAQ+ FLQKNV++ALKSYQEL  EDP DFRPYFC+GMIYSLLDRN 
Sbjct: 61  EENKVKEARDVRLIMAQMHFLQKNVEKALKSYQELSKEDPEDFRPYFCRGMIYSLLDRNE 120

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND 157
           EAKE+FAKYR+LSPKKFEVEGYLRT LSRMKLFG+N+
Sbjct: 121 EAKEQFAKYRELSPKKFEVEGYLRTSLSRMKLFGSNE 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108155|ref|XP_002314740.1| predicted protein [Populus trichocarpa] gi|222863780|gb|EEF00911.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 144/157 (91%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLL+EM + QDARNVFEEIL  NPLSFEALFENALLM+R GEG+AVI+RL EAL+IAE
Sbjct: 180 MARLLNEMRRVQDARNVFEEILVVNPLSFEALFENALLMERSGEGDAVIRRLREALDIAE 239

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           + NK+KEARDVR IMAQI+FLQKNV+EAL+SYQEL  EDP DFRPYFC+GMIYSLLDRN 
Sbjct: 240 EENKVKEARDVRLIMAQIQFLQKNVEEALESYQELSNEDPKDFRPYFCRGMIYSLLDRNE 299

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND 157
           EAKE+FAKYR+LSPKKFEVEGYLRT LSRMKLFG+N+
Sbjct: 300 EAKEQFAKYRELSPKKFEVEGYLRTSLSRMKLFGSNE 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784212|emb|CAN72842.1| hypothetical protein VITISV_000983 [Vitis vinifera]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 144/158 (91%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLL EMG+T  AR+VFEEILA NPLSFEALF NALLMD+CGEG+AVI+RLE+AL  AE
Sbjct: 317 MARLLGEMGETDRARDVFEEILASNPLSFEALFGNALLMDQCGEGDAVIRRLEDALRTAE 376

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           + NKLKEARDVR IMAQ++FL+KNVDEAL+SY+ELE EDP+DFRPYFCKGMIY+L DRN 
Sbjct: 377 NENKLKEARDVRLIMAQMQFLRKNVDEALRSYEELEKEDPSDFRPYFCKGMIYTLQDRNE 436

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDD 158
           EA+E+FAKYR+ SPKKFEVEG+L+TPLSRMKLFGT+ +
Sbjct: 437 EAREQFAKYRERSPKKFEVEGFLQTPLSRMKLFGTDSE 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473679|ref|XP_003631345.1| PREDICTED: uncharacterized protein LOC100852583 [Vitis vinifera]

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 144/158 (91%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLL EMG+T  AR+VFEEILA NPLSFEALF NALLMD+CGEG+AVI+RLE+AL  AE
Sbjct: 154 MARLLGEMGETDRARDVFEEILASNPLSFEALFGNALLMDQCGEGDAVIRRLEDALRTAE 213

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           + NKLKEARDVR IMAQ++FL+KNVDEAL+SY+ELE EDP+DFRPYFCKGMIY+L DRN 
Sbjct: 214 NENKLKEARDVRLIMAQMQFLRKNVDEALRSYEELEKEDPSDFRPYFCKGMIYTLQDRNE 273

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDD 158
           EA+E+FAKYR+ SPKKFEVEG+L+TPLSRMKLFGT+ +
Sbjct: 274 EAREQFAKYRERSPKKFEVEGFLQTPLSRMKLFGTDSE 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834748|ref|XP_002885256.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331096|gb|EFH61515.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 139/158 (87%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLL EMG+ ++AR +FEEIL  NPLSFEALFENALLMDR GEG AV++RLE+AL +AE
Sbjct: 162 MARLLGEMGRPENARQMFEEILQRNPLSFEALFENALLMDRSGEGAAVLQRLEDALAVAE 221

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
               +KEARDVR I+AQI FLQKNVDEALKSY++L  EDP DFRPYFC+GMIYSLLD+N 
Sbjct: 222 AEYLVKEARDVRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNV 281

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDD 158
           EAKE+FAKYR+LSPKKFEVEGYLRTPLS+MKLFG N++
Sbjct: 282 EAKEQFAKYRELSPKKFEVEGYLRTPLSKMKLFGGNEE 319

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401882|ref|NP_566609.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|11994105|dbj|BAB01108.1| unnamed protein product [Arabidopsis thaliana] gi|14335158|gb|AAK59859.1| AT3g18420/MYF24_13 [Arabidopsis thaliana] gi|18655375|gb|AAL76143.1| AT3g18420/MYF24_13 [Arabidopsis thaliana] gi|21592430|gb|AAM64381.1| unknown [Arabidopsis thaliana] gi|332642574|gb|AEE76095.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 139/158 (87%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MARLL EMG+ ++AR +FEEIL  NPLSFEALFENALLMDR GEG AV++RLE+AL +AE
Sbjct: 158 MARLLGEMGRPENARQMFEEILQRNPLSFEALFENALLMDRSGEGNAVLQRLEDALAVAE 217

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
               +KEARDVR I+AQI FLQKNVDEALKSY++L  EDP DFRPYFC+GMIYSLLD+N 
Sbjct: 218 AEYLVKEARDVRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNV 277

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDD 158
           EAKE+FAKYR+LSPKKFEVEGYLRTPLS+MKLFG +++
Sbjct: 278 EAKEQFAKYRELSPKKFEVEGYLRTPLSKMKLFGGSEE 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2095037	316	AT3G18420 [Arabidopsis thalian	0.963	0.5	0.753	5e-60
TAIR|locus:2049741	333	AT2G37400 "AT2G37400" [Arabido	0.926	0.456	0.379	2.9e-23
TAIR|locus:2122462	341	AT4G39470 [Arabidopsis thalian	0.823	0.395	0.345	1.5e-21
TAIR|locus:2084001	340	AT3G53560 "AT3G53560" [Arabido	0.914	0.441	0.387	1.5e-21
TAIR|locus:2181848	326	AT5G02590 "AT5G02590" [Arabido	0.878	0.441	0.379	1.7e-20
TAIR|locus:2074969	334	AT3G09490 "AT3G09490" [Arabido	0.804	0.395	0.321	1.6e-14
UNIPROTKB|Q81SV4	420	BAS1429 "TPR domain protein" [	0.823	0.321	0.262	0.00096
TIGR_CMR|BA_1541	420	BA_1541 "TPR domain protein" [	0.823	0.321	0.262	0.00096

TAIR|locus:2095037 AT3G18420 [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 119/158 (75%), Positives = 139/158 (87%)

Query:     1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
             MARLL EMG+ ++AR +FEEIL  NPLSFEALFENALLMDR GEG AV++RLE+AL +AE
Sbjct:   158 MARLLGEMGRPENARQMFEEILQRNPLSFEALFENALLMDRSGEGNAVLQRLEDALAVAE 217

Query:    61 DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
                 +KEARDVR I+AQI FLQKNVDEALKSY++L  EDP DFRPYFC+GMIYSLLD+N 
Sbjct:   218 AEYLVKEARDVRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNV 277

Query:   121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDD 158
             EAKE+FAKYR+LSPKKFEVEGYLRTPLS+MKLFG +++
Sbjct:   278 EAKEQFAKYRELSPKKFEVEGYLRTPLSKMKLFGGSEE 315

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2049741 AT2G37400 "AT2G37400" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 58/153 (37%), Positives = 88/153 (57%)

Query:     2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG-EAVIKRLEEALEIAE 60
             A + S  G  + A+  FEEIL  +PL  EA     +     G+   AV KR+EEA+   +
Sbjct:   171 ANIFSYSGDLESAKTGFEEILVKDPLRVEAYHGLVMAYSDSGDDLNAVEKRIEEAMVRCK 230

Query:    61 DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
                  K+ RD + ++AQI+ ++   +EALK Y+EL  E+P DFRPY C+G+IY++L +  
Sbjct:   231 KEKNRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYLCQGIIYTVLKKEN 290

Query:   121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLF 153
             EA+++F K+R+L PK      Y    +   KLF
Sbjct:   291 EAEKQFEKFRRLVPKNHPYREYFMDNMVASKLF 323

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2122462 AT4G39470 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 47/136 (34%), Positives = 86/136 (63%)

Query:     8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE 67
             MG+   A+ ++++IL   PL   AL   A++M +  +  +V   L EA+E+A  GN++ E
Sbjct:   180 MGELSKAKRLYKDILKEQPLLIRALHGLAMVMHKTHD-TSVFDMLIEAMEVARQGNRVTE 238

Query:    68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFA 127
              R+++ ++ Q+  ++   +E LK +Q++  ++P DFRPY C+G++YSL+D+  EA ++F 
Sbjct:   239 ERNIQVLIGQMHIVEGQFEEGLKIFQQMVNDNPRDFRPYLCQGIVYSLMDKKEEAAQQFE 298

Query:   128 KYRQLSPKKFEVEGYL 143
              Y  L P +F  +G+L
Sbjct:   299 IYWSLVPGEFPQKGFL 314

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2084001 AT3G53560 "AT3G53560" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 60/155 (38%), Positives = 87/155 (56%)

Query:     2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG---EAVIKRLEEALEI 58
             A + +  G    A+  FEEILA +PL  EA   + LLM     G   + V  R+EEA+  
Sbjct:   171 ANIFTYSGDLDLAKTGFEEILAKDPLRVEAY--HGLLMAYSDAGLDLKEVESRIEEAMLK 228

Query:    59 AEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118
              +  N   + RD + ++AQI+ ++    EALK YQEL  E+P DFRPY C+G+IY+LL +
Sbjct:   229 CKKENNQNDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGIIYTLLKK 288

Query:   119 NAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLF 153
               +A+E+F  +R+L PK      Y    +   KLF
Sbjct:   289 KDKAEEQFDNFRKLVPKNHPYREYFMDNMIATKLF 323

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2181848 AT5G02590 "AT5G02590" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 58/153 (37%), Positives = 91/153 (59%)

Query:     9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLE----EALEIAEDGNK 64
             G    A   FEE+L+ +P   EA   + L+M    E E+ +  +E    EA+E  +  NK
Sbjct:   177 GDFDSATKGFEEVLSKDPFRVEAY--HGLVM-AYSESESKLSEIESRINEAIEKCKKENK 233

Query:    65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE 124
              K+ RD   ++AQI+ ++ N  EAL+ YQEL  ++P DFRPY C+G+IY+L+ +  EA++
Sbjct:   234 -KDFRDFMLLIAQIRVIKGNPIEALRVYQELVKDEPKDFRPYLCQGLIYTLMKKKDEAEK 292

Query:   125 EFAKYRQLSPKKFEVEGYL-RTPLSRMKLFGTN 156
             +FA++R+L P+    + YL    L+  KLF  N
Sbjct:   293 QFAEFRRLVPENHPYKEYLDANVLNTNKLFAKN 325

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2074969 AT3G09490 "AT3G09490" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 44/137 (32%), Positives = 78/137 (56%)

Query:     2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVI---KRLEEALEI 58
             AR+LS  GK++ A   FEEIL  +P+  +A   + L+M+       +    KR+ + +  
Sbjct:   154 ARILSYHGKSESAIEAFEEILEKDPIRVDAY--HYLVMEYYNSKPKLTEIEKRINKVIRR 211

Query:    59 AEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118
              +   K KE    R ++AQI+F++    EA++  +EL  EDPNDF  Y  +G++Y+L+++
Sbjct:   212 CKKEKKTKEILGFRMLIAQIRFIEGKSVEAIRICEELVKEDPNDFTIYLFQGVVYTLMNK 271

Query:   119 NAEAKEEFAKYRQLSPK 135
               EA ++F    ++ P+
Sbjct:   272 GEEAAKQFEHVARVIPR 288

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0019684 "photosynthesis, light reaction" evidence=TAS

UNIPROTKB|Q81SV4 BAS1429 "TPR domain protein" [Bacillus anthracis (taxid:1392)]

 Score = 105 (42.0 bits), Expect = 0.00096, P = 0.00096
 Identities = 38/145 (26%), Positives = 66/145 (45%)

Query:     1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
             +A + +++GK  +A  V ++ L  +P    A  + A ++    + E +I  +E A++  E
Sbjct:   277 LANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGE 336

Query:    61 DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
                +L    D+ F   Q++       +ALK Y+       N   P F +   Y LL+   
Sbjct:   337 PDTQL--LWDLAFAKKQLEMYS----DALKHYESAYTSFKN--HPDFLEEYGYFLLEEGM 388

Query:   121 --EAKEEFAKYRQLSPKKFEVEGYL 143
               EAKE F +  QL P +  +E  L
Sbjct:   389 QKEAKEVFTQLIQLDPTQIHIEELL 413

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1541 BA_1541 "TPR domain protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 105 (42.0 bits), Expect = 0.00096, P = 0.00096
 Identities = 38/145 (26%), Positives = 66/145 (45%)

Query:     1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
             +A + +++GK  +A  V ++ L  +P    A  + A ++    + E +I  +E A++  E
Sbjct:   277 LANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGE 336

Query:    61 DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
                +L    D+ F   Q++       +ALK Y+       N   P F +   Y LL+   
Sbjct:   337 PDTQL--LWDLAFAKKQLEMYS----DALKHYESAYTSFKN--HPDFLEEYGYFLLEEGM 388

Query:   121 --EAKEEFAKYRQLSPKKFEVEGYL 143
               EAKE F +  QL P +  +E  L
Sbjct:   389 QKEAKEVFTQLIQLDPTQIHIEELL 413


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       164   0.00088  107 3  11 22  0.39    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  525 (56 KB)
  Total size of DFA:  123 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.37u 0.10s 18.47t   Elapsed:  00:00:01
  Total cpu time:  18.37u 0.10s 18.47t   Elapsed:  00:00:01
  Start:  Fri May 10 14:15:14 2013   End:  Fri May 10 14:15:15 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.4.1 hypothetical protein (212 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +  L  ++G   +A   +E+ L  +P + +A +  A    + G+ E  ++  E+ALE+  
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101
           D           + +    +     +EAL++Y++    DPN
Sbjct: 66  D------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           + R     G    A + F+++LA  P S  AL   A            I  L+ ALE+  
Sbjct: 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           D  + +        +AQ+    K  + A K  + L+ + P     +  +G +Y       
Sbjct: 667 DNTEAQIG------LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720

Query: 121 EAKEEFAKYRQLSP 134
            A + + K  + +P
Sbjct: 721 AAIQAYRKALKRAP 734

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 9   GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA 68
              +DAR   ++ L   P    AL        + G  E   + L + L+ A +      +
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN------S 328

Query: 69  RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAK 128
              R ++A I+     VDEA+ +       DP+D       G  Y  L    +A E  AK
Sbjct: 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388

Query: 129 YRQLSPK 135
             +L P+
Sbjct: 389 ATELDPE 395

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 43  GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102
           G+ +  ++  E+ALE+  D        D  + +A   +     +EAL+ Y++    DP++
Sbjct: 14  GDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67

Query: 103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135
            + Y+  G+ Y  L +  EA E + K  +L P 
Sbjct: 68  AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG1126	638	consensus DNA-binding cell division cycle control	99.85
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.85
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.84
PRK15359	144	type III secretion system chaperone protein SscB;	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
KOG1126	638	consensus DNA-binding cell division cycle control	99.81
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.81
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.81
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.79
PRK15359	144	type III secretion system chaperone protein SscB;	99.79
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.79
PRK12370	553	invasion protein regulator; Provisional	99.77
PRK12370	553	invasion protein regulator; Provisional	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.77
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.77
PRK11189	296	lipoprotein NlpI; Provisional	99.75
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.75
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.75
KOG1125	579	consensus TPR repeat-containing protein [General f	99.75
PRK11189	296	lipoprotein NlpI; Provisional	99.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.73
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.73
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.71
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.71
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.71
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.7
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.7
KOG0553	304	consensus TPR repeat-containing protein [General f	99.7
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.67
PLN02789	320	farnesyltranstransferase	99.67
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.65
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.65
PLN02789	320	farnesyltranstransferase	99.64
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.62
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.61
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.6
KOG1125	579	consensus TPR repeat-containing protein [General f	99.59
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.59
KOG0553	304	consensus TPR repeat-containing protein [General f	99.59
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.56
PRK14574	822	hmsH outer membrane protein; Provisional	99.56
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.55
KOG2003	840	consensus TPR repeat-containing protein [General f	99.55
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.55
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.55
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.55
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.55
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.54
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.53
PRK15331	165	chaperone protein SicA; Provisional	99.52
KOG1129	478	consensus TPR repeat-containing protein [General f	99.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.51
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.51
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.5
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.5
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.49
PRK10803	263	tol-pal system protein YbgF; Provisional	99.49
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.49
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.48
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.47
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.47
PRK10803	263	tol-pal system protein YbgF; Provisional	99.47
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.47
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.47
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.46
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.46
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.45
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.45
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.45
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.44
KOG1129	478	consensus TPR repeat-containing protein [General f	99.44
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.44
PRK14574	822	hmsH outer membrane protein; Provisional	99.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.43
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.43
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.42
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.42
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.41
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.41
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.41
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.41
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.4
PRK11906	458	transcriptional regulator; Provisional	99.39
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.39
PRK15331	165	chaperone protein SicA; Provisional	99.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.38
KOG2003	840	consensus TPR repeat-containing protein [General f	99.38
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.38
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.36
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.35
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.35
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.34
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.34
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.33
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.33
PF12688	120	TPR_5: Tetratrico peptide repeat	99.33
PF13371	73	TPR_9: Tetratricopeptide repeat	99.32
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.32
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.31
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.31
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.31
PF13512	142	TPR_18: Tetratricopeptide repeat	99.31
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.27
KOG2076	895	consensus RNA polymerase III transcription factor	99.27
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.26
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.25
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.25
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.22
PF13371	73	TPR_9: Tetratricopeptide repeat	99.22
PF13512	142	TPR_18: Tetratricopeptide repeat	99.21
KOG4234	271	consensus TPR repeat-containing protein [General f	99.2
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.2
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.2
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.19
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.18
PF12688	120	TPR_5: Tetratrico peptide repeat	99.16
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.15
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.14
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.12
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.12
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.11
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.11
KOG4234	271	consensus TPR repeat-containing protein [General f	99.1
PRK11906	458	transcriptional regulator; Provisional	99.09
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.09
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.08
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.08
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.07
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.06
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.05
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.02
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.96
KOG4555	175	consensus TPR repeat-containing protein [Function	98.95
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.94
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.93
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.93
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.91
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.9
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.87
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.86
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.85
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.82
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.81
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.81
PLN03218	1060	maturation of RBCL 1; Provisional	98.8
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.79
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.79
PLN03218	1060	maturation of RBCL 1; Provisional	98.78
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.77
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.74
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.74
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.74
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.72
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.71
PLN03077	857	Protein ECB2; Provisional	98.7
PLN03077	857	Protein ECB2; Provisional	98.69
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.69
KOG1586	288	consensus Protein required for fusion of vesicles	98.68
PF13428	44	TPR_14: Tetratricopeptide repeat	98.68
PRK04841	903	transcriptional regulator MalT; Provisional	98.64
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.64
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.64
PF13431	34	TPR_17: Tetratricopeptide repeat	98.63
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.63
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.62
KOG4555	175	consensus TPR repeat-containing protein [Function	98.62
PF13428	44	TPR_14: Tetratricopeptide repeat	98.61
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.61
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.58
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.57
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.56
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.55
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.54
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.53
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.51
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.51
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.48
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.46
PF13431	34	TPR_17: Tetratricopeptide repeat	98.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.44
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.43
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.43
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.4
PRK04841	903	transcriptional regulator MalT; Provisional	98.39
KOG1586	288	consensus Protein required for fusion of vesicles	98.38
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.38
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.34
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.31
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.3
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.28
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.27
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.27
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.24
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.23
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.21
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.2
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.17
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.17
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.15
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.14
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.07
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.04
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.02
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	98.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.0
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.99
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.93
KOG1585	308	consensus Protein required for fusion of vesicles	97.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.88
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.88
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.84
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.83
KOG2471	696	consensus TPR repeat-containing protein [General f	97.83
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.82
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.79
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.78
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.78
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.76
KOG1585	308	consensus Protein required for fusion of vesicles	97.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.75
KOG2471	696	consensus TPR repeat-containing protein [General f	97.75
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.72
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.71
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.7
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.68
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.65
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.64
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.62
PRK10941	269	hypothetical protein; Provisional	97.62
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.61
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.53
PRK10941	269	hypothetical protein; Provisional	97.47
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.46
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.4
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.4
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.4
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.39
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.35
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.34
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.31
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.3
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.3
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.3
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.3
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.28
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.27
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.25
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.22
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.22
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.2
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.2
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.19
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.17
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.17
KOG3364	149	consensus Membrane protein involved in organellar	97.17
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.15
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.14
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.1
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.08
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.08
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.07
KOG1310	758	consensus WD40 repeat protein [General function pr	97.05
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.01
KOG3364	149	consensus Membrane protein involved in organellar	97.01
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.0
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.98
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.95
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.93
KOG1258	577	consensus mRNA processing protein [RNA processing	96.89
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.86
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.8
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.79
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.72
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.63
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.62
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.61
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.6
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.6
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.54
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	96.46
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.42
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.37
COG2912	269	Uncharacterized conserved protein [Function unknow	96.36
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.29
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.23
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.22
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.19
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.19
COG2912	269	Uncharacterized conserved protein [Function unknow	96.18
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.12
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.06
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	96.05
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.98
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.96
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.94
KOG1310	758	consensus WD40 repeat protein [General function pr	95.85
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.79
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.73
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	95.64
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.64
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.62
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.61
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.6
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.38
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.35
COG4455	273	ImpE Protein of avirulence locus involved in tempe	95.21
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.08
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.07
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.05
COG3947	361	Response regulator containing CheY-like receiver a	95.04
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.9
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.85
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.55
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.49
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	94.49
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.47
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.46
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.38
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.35
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	94.28
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.27
KOG1258	577	consensus mRNA processing protein [RNA processing	94.26
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	94.1
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.1
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.06
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	94.0
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.98
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.9
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.86
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.84
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	93.65
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.6
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	93.37
COG3947	361	Response regulator containing CheY-like receiver a	93.34
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.31
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.17
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.11
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.97
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.96
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	92.74
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.69
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.59
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.11
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.08
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.08
PF12854	34	PPR_1: PPR repeat	92.04
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	91.99
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.99
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	91.98
PRK11619	644	lytic murein transglycosylase; Provisional	91.97
KOG2422	665	consensus Uncharacterized conserved protein [Funct	91.86
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.81
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	91.68
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.53
KOG1463	411	consensus 26S proteasome regulatory complex, subun	91.51
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	91.12
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.07
PF13041	50	PPR_2: PPR repeat family	90.76
COG4455	273	ImpE Protein of avirulence locus involved in tempe	90.62
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	90.62
TIGR03362	301	VI_chp_7 type VI secretion-associated protein, VC_	90.52
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	90.4
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.21
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	89.92
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.83
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	89.66
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.65
KOG3783	546	consensus Uncharacterized conserved protein [Funct	89.59
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	89.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.32
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	89.31
smart00299	140	CLH Clathrin heavy chain repeat homology.	89.08
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	89.04
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	88.86
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	88.8
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	88.11
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	86.95
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	86.88
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	85.85
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	85.64
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	85.58
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	85.25
PF13041	50	PPR_2: PPR repeat family	85.22
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	85.06
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	84.77
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	84.71
KOG2758	432	consensus Translation initiation factor 3, subunit	84.34
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	84.33
KOG2908	380	consensus 26S proteasome regulatory complex, subun	84.3
KOG2422	665	consensus Uncharacterized conserved protein [Funct	83.55
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	83.2
PF13812	34	PPR_3: Pentatricopeptide repeat domain	82.97
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	82.66
PRK11619	644	lytic murein transglycosylase; Provisional	82.6
PF04090	199	RNA_pol_I_TF: RNA polymerase I specific initiation	82.41
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	82.4
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	82.26
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.18
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	82.11
KOG0687	393	consensus 26S proteasome regulatory complex, subun	81.69
KOG3783	546	consensus Uncharacterized conserved protein [Funct	80.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	80.67
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	80.4
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	80.32
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	80.17
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	80.09
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	80.02

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.3e-21  Score=142.97  Aligned_cols=145  Identities=16%  Similarity=0.217  Sum_probs=93.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc----------------------------------CCCCHHHHHHHHHHHHHcCCcH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG----------------------------------NPLSFEALFENALLMDRCGEGE   46 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~----------------------------------~p~~~~~~~~la~~~~~~~~~~   46 (164)
                      +|+.|++.++|++|..+|+.+-+.                                  +|+.|+.|..+|+||..+++++
T Consensus       359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~  438 (638)
T KOG1126|consen  359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD  438 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence            356667777777777777666333                                  3445667777777777777777


Q ss_pred             HHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHH
Q 031170           47 AVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEF  126 (164)
Q Consensus        47 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l  126 (164)
                      .|+++|++|++++|.      ...++..+|.-+....+++.|+.+|+.++..+|.+..+|+.+|.+|.++++++.|..+|
T Consensus       439 ~Aik~f~RAiQldp~------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f  512 (638)
T KOG1126|consen  439 TAIKCFKRAIQLDPR------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF  512 (638)
T ss_pred             HHHHHHHHhhccCCc------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence            777777777777776      55566666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhhCCCcchhhhHhhhhhhhhh
Q 031170          127 AKYRQLSPKKFEVEGYLRTPLSRMK  151 (164)
Q Consensus       127 ~~~~~~~p~~~~~~~~~~~~~~~~~  151 (164)
                      ++|+.++|.+.....++...+...+
T Consensus       513 qkA~~INP~nsvi~~~~g~~~~~~k  537 (638)
T KOG1126|consen  513 QKAVEINPSNSVILCHIGRIQHQLK  537 (638)
T ss_pred             HhhhcCCccchhHHhhhhHHHHHhh
Confidence            6666666666555555544444433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.85  E-value=6.5e-20  Score=140.86  Aligned_cols=131  Identities=17%  Similarity=0.207  Sum_probs=107.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+      ...++..+|.+++.
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~  411 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE------DPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence            456677888888888888888888888888888888888888888888888888888887      67778888888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      .|++++|+.+|++++..+|++..+++.+|.++..+|++++|+..+.+++...|.+..
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~  468 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD  468 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence            888888888888888888888888888888888888888888888888888887743

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.84  E-value=2.9e-19  Score=118.89  Aligned_cols=126  Identities=10%  Similarity=0.085  Sum_probs=118.1

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH-HHccC-
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK-FLQKN-   84 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-~~~~~-   84 (164)
                      ..++.++++..+++++..+|+++++|..+|.++...|++++|+..|++++++.|+      +..++..+|.++ ...|+ 
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~~lA~aL~~~~g~~  124 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYAALATVLYYQAGQH  124 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCC
Confidence            3567799999999999999999999999999999999999999999999999999      789999999974 77787 


Q ss_pred             -HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           85 -VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        85 -~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                       +++|...++++++.+|++..+++.+|..+...|++++|+.+++++++..|.+..
T Consensus       125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence             599999999999999999999999999999999999999999999999988743

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.84  E-value=2.1e-19  Score=113.98  Aligned_cols=116  Identities=12%  Similarity=0.189  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170           14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQ   93 (164)
Q Consensus        14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   93 (164)
                      -...|++++..+|++   +..+|.++...|++++|+..|++++..+|.      +..++..+|.++...|++++|+.+|+
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~   82 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYG   82 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            457899999999975   667899999999999999999999999999      79999999999999999999999999


Q ss_pred             HHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           94 ELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        94 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      +++..+|+++.+++.+|.++...|++++|+..|.+++...|++..
T Consensus        83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359         83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999999999999999999999999843

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-19  Score=133.31  Aligned_cols=130  Identities=17%  Similarity=0.102  Sum_probs=108.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||-+|.+.|..+-|++.|++++...|+.++++.++|..+...|+..+|..+|.+++.+.|.      .+.+...+|.+|.
T Consensus       292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~  365 (966)
T KOG4626|consen  292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYR  365 (966)
T ss_pred             eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHH
Confidence            4567788888888888888888888888888888888888888888888888888888888      7777888888888


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|.+++|...|.+++..+|....++.++|.+|.++|+.++|+.+|+.++++.|..
T Consensus       366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f  421 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF  421 (966)
T ss_pred             HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence            88888888888888888888888888888888888888888888888888888776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=7.4e-19  Score=135.10  Aligned_cols=130  Identities=16%  Similarity=0.184  Sum_probs=124.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+      ...++..+|.++.
T Consensus       371 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~  444 (615)
T TIGR00990       371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHH
Confidence            3667889999999999999999999999999999999999999999999999999999998      6788889999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|++++|+..|++++..+|+++..+..+|.++...|++++|+..|.+++.+.|..
T Consensus       445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999999999999999875

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1e-19  Score=134.37  Aligned_cols=129  Identities=17%  Similarity=0.130  Sum_probs=85.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.+|..+++++.|++.|+++++++|++.-+|..+|.=+..++++|.|..+|++|+..+|.      +..+|+-+|.+|.+
T Consensus       428 GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r------hYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  428 GNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR------HYNAWYGLGTVYLK  501 (638)
T ss_pred             cchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch------hhHHHHhhhhheec
Confidence            556666667777777777777777766666666666666666666666666666666666      56666666666666


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++++.|.-+|++|+.++|.+.......|..+.+.|+.++|+.++++|+.++|.+
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            6666666666666666666666666666666666666666666666666666666

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.81  E-value=2.6e-18  Score=113.15  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=122.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++|+++.|+      +..++...|.-++
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------~GdVLNNYG~FLC  114 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------ccchhhhhhHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999      7889999999999


Q ss_pred             HccCHHHHHHHHHHHHHh--CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           81 LQKNVDEALKSYQELEIE--DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      .+|.+++|...|++++..  .|.....+.++|.|..++|+.+.|.++|++++..+|+...
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~  174 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP  174 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence            999999999999999975  2345677899999999999999999999999999999833

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=5.4e-19  Score=130.54  Aligned_cols=129  Identities=20%  Similarity=0.207  Sum_probs=68.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+-..|+..+|.++|.+++...|+.++++.++|+++.++|..++|..+|.+++...|.      ...++..+|.+|-.
T Consensus       327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kq  400 (966)
T KOG4626|consen  327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------FAAAHNNLASIYKQ  400 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh------hhhhhhhHHHHHHh
Confidence            334444555555555555555555555555555555555555555555555555555555      44555555555555


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +|++++|+.+|+.++.+.|...+++.++|.+|..+|+.+.|+..+.+++.++|..
T Consensus       401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~  455 (966)
T KOG4626|consen  401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF  455 (966)
T ss_pred             cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence            5555555555555555555555555555555555555555555555555555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.80  E-value=6.7e-18  Score=106.08  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=112.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170           16 NVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL   95 (164)
Q Consensus        16 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   95 (164)
                      +.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.      ...++..+|.++...|++++|+.+++++
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999998      7899999999999999999999999999


Q ss_pred             HHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           96 EIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        96 ~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      +..+|.++..++.+|.++...|++++|+..++++++..|++..
T Consensus        78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            9999999999999999999999999999999999999999844

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.79  E-value=1e-17  Score=113.42  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=83.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..+++++..+|++..++..+|.++..+|++++|+..++++++..|.      ...++..+|.++..
T Consensus        38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~  111 (234)
T TIGR02521        38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH
Confidence            456677777778888777777777777777777777777777777777777777777766      34455555555555


Q ss_pred             ccCHHHHHHHHHHHHHhC--CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIED--PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+..+++++...  |.....+..+|.++...|++++|...+.+++...|.+
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            556666555555555432  2233444555555555555555555555555555554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.79  E-value=2.4e-18  Score=109.15  Aligned_cols=109  Identities=13%  Similarity=-0.036  Sum_probs=103.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|.      ...+++.+|.++..
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~------~~~a~~~lg~~l~~  104 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS------HPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999998      79999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL  116 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  116 (164)
                      .|++++|+..|++++...|+++..+..++.+....
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999998888876553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=5.1e-18  Score=121.41  Aligned_cols=125  Identities=17%  Similarity=0.202  Sum_probs=87.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||..|+++++...|++.|+++++++|.|-.+|+++|+.|.-++-+.=|+-+|++|+..-|+      +++.|..+|+||.
T Consensus       370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~aLG~CY~  443 (559)
T KOG1155|consen  370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWVALGECYE  443 (559)
T ss_pred             hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHHHHHHHHH
Confidence            3555666666667777777777777777677777777776666666677777777776666      5677777777777


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      +.++.++|++||..++........++..+|.+|.++++..+|..++.+.+.
T Consensus       444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            777777777777777776666666777777777777777777777777666

>PRK12370 invasion protein regulator; Provisional

Probab=99.77  E-value=1.6e-17  Score=126.20  Aligned_cols=122  Identities=15%  Similarity=0.010  Sum_probs=100.8

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA   88 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   88 (164)
                      +++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+      +..++..+|.++...|++++|
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eA  391 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEA  391 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHH
Confidence            45788888888888888888888888888888888888888888888888888      677888888888888888888


Q ss_pred             HHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC-CCc
Q 031170           89 LKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS-PKK  136 (164)
Q Consensus        89 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~-p~~  136 (164)
                      +.++++++..+|.++...+.++.++...|++++|+..+++++... |.+
T Consensus       392 i~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~  440 (553)
T PRK12370        392 LQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN  440 (553)
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC
Confidence            888888888888877766666666777888888888888887765 444

>PRK12370 invasion protein regulator; Provisional

Probab=99.77  E-value=2e-17  Score=125.69  Aligned_cols=131  Identities=12%  Similarity=0.128  Sum_probs=118.6

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.      .......++.+++
T Consensus       344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------~~~~~~~~~~~~~  417 (553)
T PRK12370        344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------RAAAGITKLWITY  417 (553)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHH
Confidence            3567888999999999999999999999999999999999999999999999999999998      5555566677788


Q ss_pred             HccCHHHHHHHHHHHHHhC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           81 LQKNVDEALKSYQELEIED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      ..|++++|+.++++++... |+++..+..+|.++...|+.++|+..+.++....|...
T Consensus       418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~  475 (553)
T PRK12370        418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL  475 (553)
T ss_pred             hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence            8999999999999999875 77888899999999999999999999999988888763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.77  E-value=1.9e-17  Score=131.46  Aligned_cols=125  Identities=14%  Similarity=0.050  Sum_probs=119.2

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      ..|++++|+..|++++..+|+ +.++..+|.++.+.|++++|+..|++++..+|+      +..++..+|.++...|+++
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~e  660 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIA  660 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHH
Confidence            449999999999999999996 899999999999999999999999999999999      7889999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           87 EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      +|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...|+...
T Consensus       661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence            9999999999999999999999999999999999999999999999998843

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.77  E-value=5.8e-17  Score=109.68  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=120.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|++.+++++...|.++.++..+|.++...|++++|+..++++++..+...    ....+..+|.++.
T Consensus        71 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~  146 (234)
T TIGR02521        71 LALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ----PARSLENAGLCAL  146 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----chHHHHHHHHHHH
Confidence            367888999999999999999999999999999999999999999999999999998643211    3567778999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++|..++.+++..+|.+...+..++.++...|++++|+..+++++...|.+
T Consensus       147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  202 (234)
T TIGR02521       147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT  202 (234)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999987765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.77  E-value=3.6e-17  Score=126.28  Aligned_cols=128  Identities=16%  Similarity=0.086  Sum_probs=102.5

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHH----HHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEA----VIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      .++...|++++|+..|++++..+|+++.++..+|.++...|++++    |+..++++++.+|+      ...++..+|.+
T Consensus       220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~  293 (656)
T PRK15174        220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADA  293 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHH
Confidence            456677888888888888888888888888888888888888875    78888888888887      67777778888


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|.+++...|.+
T Consensus       294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            8888888888888888888888888777888888888888888888888888777776

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.75  E-value=7.7e-17  Score=113.77  Aligned_cols=121  Identities=18%  Similarity=0.141  Sum_probs=63.5

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      .++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+      ...++..+|.++...
T Consensus        72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~  145 (296)
T PRK11189         72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAYLNRGIALYYG  145 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHC
Confidence            34445555555555555555555555555555555555555555555555555555555      445555555555555


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR  130 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  130 (164)
                      |++++|+..+++++..+|+++...+. ..+....++.++|+..+.+..
T Consensus       146 g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        146 GRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHH
Confidence            55555555555555555555421111 111223445555555554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.75  E-value=7.2e-17  Score=124.64  Aligned_cols=131  Identities=18%  Similarity=0.146  Sum_probs=123.1

Q ss_pred             CchhhhhcCCchH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            1 MARLLSEMGKTQD----ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         1 la~~~~~~~~~~~----A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      +|.++...|++++    |+..|++++..+|+++.++..+|.++..+|++++|+..+++++..+|+      ...++..+|
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La  325 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYA  325 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHH
Confidence            4677889999996    899999999999999999999999999999999999999999999998      788889999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .++...|++++|+..|++++..+|.+...+...|.++...|++++|+..|.++++..|++.
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            9999999999999999999999999887777789999999999999999999999999873

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=7.3e-17  Score=115.58  Aligned_cols=129  Identities=22%  Similarity=0.150  Sum_probs=123.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.-|.-.++.++|+.+|+++++++|+...+|..+|.=|.++.+...|++.|++|++++|.      +.++|+.+|+.|..
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWYGLGQAYEI  410 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHhhhhHHHHH
Confidence            566778899999999999999999999999999999999999999999999999999999      89999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++..-=|+-+|++++..-|+|...|..+|.+|...++.++|+.+|++++.....+
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999999999887664

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=3.1e-17  Score=119.88  Aligned_cols=149  Identities=21%  Similarity=0.210  Sum_probs=119.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh---------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK---------------   66 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------------   66 (164)
                      |..+++.|+..+|.-.|+.+++.+|.+.++|..||.+..+.++-..|+..++++++++|++...-               
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence            34566677777777777777777777777777777777777776677777777777776643210               


Q ss_pred             --------------------------------------------------------hhhhHHHHHHHHHHHccCHHHHHH
Q 031170           67 --------------------------------------------------------EARDVRFIMAQIKFLQKNVDEALK   90 (164)
Q Consensus        67 --------------------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~   90 (164)
                                                                              ..+.++..||.+|...|+|++|+.
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence                                                                    046777789999999999999999


Q ss_pred             HHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhc
Q 031170           91 SYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKL  152 (164)
Q Consensus        91 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~  152 (164)
                      ||+.+|...|++...|..+|-++....+..+|+..|++|+.+.|..  ++.++.+.++++-+
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y--VR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY--VRVRYNLGISCMNL  511 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe--eeeehhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999  67777776655544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.74  E-value=1.7e-16  Score=112.00  Aligned_cols=127  Identities=18%  Similarity=0.204  Sum_probs=117.2

Q ss_pred             hhhcCCchHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            5 LSEMGKTQDARNVFEEILAGNP----LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ....+..+.++..+.+++...|    ..+..++.+|.++...|++++|+..|+++++.+|+      .+.++..+|.++.
T Consensus        36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~  109 (296)
T PRK11189         36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLT  109 (296)
T ss_pred             cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHH
Confidence            3345678899999999997544    33677999999999999999999999999999998      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      ..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|++.
T Consensus       110 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        110 QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999999999999999999999983

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.73  E-value=2e-16  Score=128.86  Aligned_cols=136  Identities=15%  Similarity=0.155  Sum_probs=121.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------hhhHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE--------ARDVRF   73 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------~~~~~~   73 (164)
                      |.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|+......        ......
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            566788999999999999999999999999999999999999999999999999999987432100        011223


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+..|+++++..|.+.
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            5688999999999999999999999999999999999999999999999999999999999983

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.73  E-value=3.8e-16  Score=106.89  Aligned_cols=132  Identities=17%  Similarity=0.197  Sum_probs=115.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..+...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++++.+|+....   ..+++.+|.+
T Consensus        40 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~a~~~~g~~  116 (235)
T TIGR03302        40 AKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA---DYAYYLRGLS  116 (235)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch---HHHHHHHHHH
Confidence            5678899999999999999999999886   578999999999999999999999999999973321   2367889999


Q ss_pred             HHHc--------cCHHHHHHHHHHHHHhCCCCchhh-----------------hhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           79 KFLQ--------KNVDEALKSYQELEIEDPNDFRPY-----------------FCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        79 ~~~~--------~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ++..        |++++|++.+++++..+|++...+                 +.+|.++...|++.+|+..+.+++...
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  196 (235)
T TIGR03302       117 NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY  196 (235)
T ss_pred             HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence            9876        899999999999999999986542                 356788888999999999999999998


Q ss_pred             CCc
Q 031170          134 PKK  136 (164)
Q Consensus       134 p~~  136 (164)
                      |+.
T Consensus       197 p~~  199 (235)
T TIGR03302       197 PDT  199 (235)
T ss_pred             CCC
Confidence            875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.73  E-value=1.3e-16  Score=111.83  Aligned_cols=149  Identities=21%  Similarity=0.200  Sum_probs=117.5

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGN--PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      .++...++++++...++++....  |.++..|..+|.++.+.|++++|+..++++++.+|+      +..+...++.++.
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li  191 (280)
T PF13429_consen  118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLI  191 (280)
T ss_dssp             H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHC
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHH
Confidence            46778899999999999977655  678899999999999999999999999999999998      7888889999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccch
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND  157 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  157 (164)
                      ..|+++++...+.......|.++..+..+|.++...|++++|+.++.++++..|+|+.....+..++.....+....
T Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~  268 (280)
T PF13429_consen  192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL  268 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred             HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999988888888999999999999999999999999999999999999666666666665555554433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.73  E-value=2.8e-16  Score=103.64  Aligned_cols=148  Identities=16%  Similarity=0.111  Sum_probs=127.6

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.+|...|+.+.|.+.|+++++++|++.+++.+.|..+..+|++++|...|++|+.. |.-+.   ....+..+|.|..
T Consensus        75 ~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~---~s~t~eN~G~Cal  150 (250)
T COG3063          75 RAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGE---PSDTLENLGLCAL  150 (250)
T ss_pred             HHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCC---cchhhhhhHHHHh
Confidence            4678999999999999999999999999999999999999999999999999999985 33222   4678889999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcccc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGT  155 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  155 (164)
                      +.|+++.|..+|++++..+|+.+.+...++..++..|++..|..++++.....+..   ...+.+.+...+.++.
T Consensus       151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~---A~sL~L~iriak~~gd  222 (250)
T COG3063         151 KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ---AESLLLGIRIAKRLGD  222 (250)
T ss_pred             hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc---HHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999998777643   2333344444444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.73  E-value=2.7e-16  Score=120.98  Aligned_cols=130  Identities=15%  Similarity=0.013  Sum_probs=125.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||++..+.|.+++|..+++.++...|++..++..++.++.+.+++++|+..+++++...|+      +..++..+|.++.
T Consensus        92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~  165 (694)
T PRK15179         92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHH
Confidence            4778899999999999999999999999999999999999999999999999999999999      8999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++|+.+|++++..+|++..++..+|.++...|+.++|...|.+++.....-
T Consensus       166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999999999999999999999999887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=3.4e-16  Score=124.47  Aligned_cols=132  Identities=14%  Similarity=0.045  Sum_probs=116.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+.+|+++++.+|.....+..++......|++++|+..++++++.+|+       ..++..+|.++..
T Consensus       549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~  621 (987)
T PRK09782        549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYVARATIYRQ  621 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHH
Confidence            456677888888888888888888888777777777777779999999999999999886       5678899999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVE  140 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~  140 (164)
                      .|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|.+++...|++....
T Consensus       622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~  680 (987)
T PRK09782        622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI  680 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999984433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.72  E-value=6.2e-16  Score=97.37  Aligned_cols=108  Identities=13%  Similarity=0.087  Sum_probs=102.3

Q ss_pred             HHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           21 ILAGN-PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        21 ~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      +..+. ++..+..+.+|..+.+.|++++|...|+-++..+|.      +...|+.+|-++..+|+|++|+.+|..++..+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~   99 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK   99 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34456 778889999999999999999999999999999999      89999999999999999999999999999999


Q ss_pred             CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170          100 PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus       100 p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      |+++.++++.|.+++..|+.+.|+..|+.++....
T Consensus       100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999873

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.71  E-value=2.8e-17  Score=115.23  Aligned_cols=125  Identities=19%  Similarity=0.151  Sum_probs=97.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|+++++.+|+++.++..++.++...|+++++...+....+..|+      ++..+..+|.++..
T Consensus       153 a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~  226 (280)
T PF13429_consen  153 AEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPDLWDALAAAYLQ  226 (280)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCCHCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHHHHHHHHHHhcc
Confidence            678899999999999999999999999999999999999999999999999998888777      67888899999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      .|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..+..+++..
T Consensus       227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999999988653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.71  E-value=6.2e-16  Score=122.31  Aligned_cols=129  Identities=19%  Similarity=0.074  Sum_probs=102.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      +.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++..|+      ...++..+|.++..
T Consensus       743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~  816 (899)
T TIGR02917       743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLE  816 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHh
Confidence            455667777777777777777777888888888888888888888888888888887776      56677777888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .|+ .+|+..+++++...|+++..+..+|.++...|++++|+.++++++...|.+.
T Consensus       817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~  871 (899)
T TIGR02917       817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA  871 (899)
T ss_pred             cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence            888 7788888888888888888888888888888888888888888888888763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.71  E-value=8.2e-16  Score=125.36  Aligned_cols=135  Identities=10%  Similarity=0.018  Sum_probs=119.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh-------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA-------------   68 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------------   68 (164)
                      |.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++.+|........             
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A  437 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA  437 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence            4567789999999999999999999999999999999999999999999999999999984321100             


Q ss_pred             -----------------------hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH
Q 031170           69 -----------------------RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE  125 (164)
Q Consensus        69 -----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~  125 (164)
                                             ...+..+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..
T Consensus       438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~  517 (1157)
T PRK11447        438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL  517 (1157)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                   011224567778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCc
Q 031170          126 FAKYRQLSPKK  136 (164)
Q Consensus       126 l~~~~~~~p~~  136 (164)
                      +++++...|.+
T Consensus       518 l~~al~~~P~~  528 (1157)
T PRK11447        518 MRRLAQQKPND  528 (1157)
T ss_pred             HHHHHHcCCCC
Confidence            99999999988

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.71  E-value=6.1e-16  Score=105.85  Aligned_cols=135  Identities=11%  Similarity=0.078  Sum_probs=114.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------CCcHHHHHHHHHHHhhccccchhhh--
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFE---ALFENALLMDRC--------GEGEAVIKRLEEALEIAEDGNKLKE--   67 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~--   67 (164)
                      +|.++...|++++|+..|++++..+|+++.   +++.+|.++...        |++++|+..++++++.+|+......  
T Consensus        76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302        76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            367889999999999999999999998876   689999999876        7899999999999999998532210  


Q ss_pred             ---------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           68 ---------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        68 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                               .......+|.+++..|++.+|+..+++++...|++   ..+++.+|.++...|++++|+.+++......|+
T Consensus       156 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       156 KRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence                     00122467899999999999999999999998775   478999999999999999999999888776663

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.70  E-value=9.5e-16  Score=121.27  Aligned_cols=129  Identities=18%  Similarity=0.160  Sum_probs=114.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.      ...++..+|.++..
T Consensus       132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~  205 (899)
T TIGR02917       132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG------NVDALLLKGDLLLS  205 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHh
Confidence            567788899999999999999999999999999999999999999999999999998887      67788888999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.+|++++..+|.+...++.++.++...|++++|...+..++...|.+
T Consensus       206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~  260 (899)
T TIGR02917       206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS  260 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999899888888888888888888888888888888888876

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=1.7e-15  Score=101.19  Aligned_cols=141  Identities=18%  Similarity=0.216  Sum_probs=125.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+..+|++++|+++|+..+..+|.+.-++....-+...+|+.-+|++.+...++.++.      +.++|..++.+|+.
T Consensus        93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D~EAW~eLaeiY~~  166 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------DQEAWHELAEIYLS  166 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHh
Confidence            345678899999999999999999999999988888889999999999999999999998      89999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC---CHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD---RNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRM  150 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~  150 (164)
                      .|+|++|.-|+++++-..|-++..+..+|.+++-+|   +..-|..+|.++++++|.+  .+++++..++..
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~--~ral~GI~lc~~  236 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN--LRALFGIYLCGS  236 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh--HHHHHHHHHHHH
Confidence            999999999999999999999998888998877755   4567999999999999977  667777654443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=4e-16  Score=106.50  Aligned_cols=112  Identities=18%  Similarity=0.136  Sum_probs=99.9

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      .-++..++|++|+..|.++|.++|.++-.|.+.+.+|.++|+++.|++-++.++.++|.      ...+|..+|..|..+
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~------yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH------YSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH------HHHHHHHHHHHHHcc
Confidence            44678899999999999999999999999999999999999999999999999999998      889999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA  120 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  120 (164)
                      |++.+|+..|++++.++|++...+-.+.++-...++..
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999877777777666655444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.69  E-value=2.3e-15  Score=109.98  Aligned_cols=130  Identities=17%  Similarity=0.084  Sum_probs=107.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++..+|..     ...++..++.++..
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~~l~~~~~~  261 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-----LSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-----HHHHHHHHHHHHHH
Confidence            4456677888889999988888888888888888888888888999998888888877651     13456678888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .|++++|+..+++++...|+.. ....++.++...|++++|+..+.+++...|++.
T Consensus       262 ~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~  316 (389)
T PRK11788        262 LGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR  316 (389)
T ss_pred             cCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence            9999999999999888888764 447888888889999999999999988888873

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.69  E-value=1.3e-15  Score=111.16  Aligned_cols=134  Identities=16%  Similarity=0.148  Sum_probs=106.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+.+|+++++..|.+..++..++.++...|++++|+..++++++..|..... .....+..+|.++..
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~  192 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALA  192 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHh
Confidence            5677788888888888888888888888888888888888888888888888888877653211 012345567888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.+|+++++.+|....+++.+|.++...|++++|+..+.+++...|.+
T Consensus       193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            8888888888888888888888888888888888888888888888888877764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.67  E-value=1.8e-15  Score=109.12  Aligned_cols=109  Identities=11%  Similarity=-0.002  Sum_probs=102.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |...+..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.      ...+++.+|.+++.
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a~~~lg~~~~~   82 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHH
Confidence            566788999999999999999999999999999999999999999999999999999998      78899999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL  116 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  116 (164)
                      .|++++|+..|++++..+|++..+...++.+...+
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999888887776554

>PLN02789 farnesyltranstransferase

Probab=99.67  E-value=6.1e-15  Score=104.60  Aligned_cols=132  Identities=8%  Similarity=0.054  Sum_probs=121.3

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      ++...+.+++|+..+.++|..+|++..+|...+.++...| .+++++..+.++++.+|+      +..+|...+.+....
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l  119 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKL  119 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHc
Confidence            4566789999999999999999999999999999999998 579999999999999999      788999999999888


Q ss_pred             cCH--HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170           83 KNV--DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEG  141 (164)
Q Consensus        83 ~~~--~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~  141 (164)
                      |+.  ++++.++.+++..+|++..+|..++.++...|++++++..+.++++.+|.+.....
T Consensus       120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~  180 (320)
T PLN02789        120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN  180 (320)
T ss_pred             CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence            874  78899999999999999999999999999999999999999999999999944333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.6e-15  Score=110.91  Aligned_cols=146  Identities=21%  Similarity=0.192  Sum_probs=126.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh-hhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-ARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~   80 (164)
                      |..|..+++++-|..+|.+++.+.|.+|-++..+|.+.+..+.|.+|..+|+.++..-+....... -...+..+|.++.
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R  466 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR  466 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence            556788999999999999999999999999999999999999999999999999954433221110 1345678999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPL  147 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~  147 (164)
                      +++.+++|+.+|++++...|.+...+-..|.+|..+|+++.|+++|.+++.+.|++......+...+
T Consensus       467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999955555555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.3e-15  Score=109.97  Aligned_cols=129  Identities=14%  Similarity=0.188  Sum_probs=103.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.+|....+.++-...|.++.+++|.++++|+..|++++-.+++++|+.-|++++.++|.      +.-.+..++-..++
T Consensus       367 a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  367 AAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYIQLCCALYR  440 (606)
T ss_pred             HHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHHHHHHHHHH
Confidence            456667777778888888888888888888888888888888888888888888888887      66777777778888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++.+++++..|+.+++.+|+.++.+...|.++..+++++.|+..|.+++.+.|..
T Consensus       441 ~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~  495 (606)
T KOG0547|consen  441 QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE  495 (606)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence            8888888888888888888888888888888888888888888888888888773

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.65  E-value=3.7e-15  Score=93.56  Aligned_cols=99  Identities=18%  Similarity=0.072  Sum_probs=93.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|.      ....++.+|.++..
T Consensus        24 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~   97 (135)
T TIGR02552        24 AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD------DPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999998      78899999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPY  106 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~  106 (164)
                      .|++++|+.+++++++.+|++....
T Consensus        98 ~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        98 LGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             cCCHHHHHHHHHHHHHhccccchHH
Confidence            9999999999999999999887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=4.3e-15  Score=107.31  Aligned_cols=148  Identities=18%  Similarity=0.231  Sum_probs=136.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++-.|++-.|.+.|+++|+++|.+...|..+|.+|....+.++-...|.++.+++|.      ++.+++..|++++.
T Consensus       333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~------n~dvYyHRgQm~fl  406 (606)
T KOG0547|consen  333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE------NPDVYYHRGQMRFL  406 (606)
T ss_pred             hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC------CCchhHhHHHHHHH
Confidence            445677899999999999999999999999999999999999999999999999999999      89999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcccc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGT  155 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  155 (164)
                      .+++++|+.-|++++.++|++.-++.+++.+.++.+++++++..|+.++...|.-.....++...+.-...|+.
T Consensus       407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~  480 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDK  480 (606)
T ss_pred             HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999987777777766555555543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.65  E-value=9.9e-15  Score=111.49  Aligned_cols=128  Identities=17%  Similarity=0.243  Sum_probs=123.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..|++++|.+++.++|+.+|.++.+|+.+|.+|.++|+.+++....-.|..+.|+      +...|..++.....
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~------d~e~W~~ladls~~  219 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK------DYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHh
Confidence            456677899999999999999999999999999999999999999999999999999999      78999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      +|++.+|+-||.++++.+|.+....+..+.+|.++|+...|.+.+.+++...|.
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            999999999999999999999999999999999999999999999999999993

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.65  E-value=1.9e-14  Score=96.62  Aligned_cols=152  Identities=18%  Similarity=0.092  Sum_probs=132.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      +..+...|+-+.+..+..++...+|.+..+...+|...+..|++.+|+..+.++....|+      +..++..+|-+|.+
T Consensus        73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq  146 (257)
T COG5010          73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHH
Confidence            345677888888899999988889999888888899999999999999999999999998      78999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccchhh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDDI  159 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  159 (164)
                      .|++++|...|.++++..|+++.+..++|..+...|+.+.|..++..+....+.+..+..-+.++......|...++|
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            999999999999999999999999999999999999999999999999888887866666666677777776666555

>PLN02789 farnesyltranstransferase

Probab=99.64  E-value=2.1e-14  Score=101.87  Aligned_cols=141  Identities=11%  Similarity=0.094  Sum_probs=123.3

Q ss_pred             chhhhhcC-CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc--HHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMG-KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG--EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      +.++...| ++++++..+++++..+|++..+|...+.+....|+.  ++++.++.++++.+|.      +..+|..++.+
T Consensus        78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~~R~w~  151 (320)
T PLN02789         78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWSHRQWV  151 (320)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHHHHHHH
Confidence            34566677 689999999999999999999999999999988874  6789999999999999      78999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc---CCH----HHHHHHHHHHHhhCCCcchhhhHhhhhhh
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL---DRN----AEAKEEFAKYRQLSPKKFEVEGYLRTPLS  148 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~----~~A~~~l~~~~~~~p~~~~~~~~~~~~~~  148 (164)
                      ....|+|+++++++.++++.+|.+..+|..++.++...   |..    ++++.+..+++..+|++.....++..++.
T Consensus       152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~  228 (320)
T PLN02789        152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK  228 (320)
T ss_pred             HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence            99999999999999999999999999999999998776   333    57899999999999999665555555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.62  E-value=5.7e-14  Score=110.54  Aligned_cols=128  Identities=13%  Similarity=0.111  Sum_probs=112.3

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      ++....|++++|+..+.++....|....++..+|.++...|++++|+..+++++..+|.      +..++..++.++...
T Consensus        23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~   96 (765)
T PRK10049         23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADA   96 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHC
Confidence            45667888999999999988888888888999999999999999999999999999888      677788888889999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      |++++|+..+++++...|++.. ++.+|.++...|+.++|+..+++++...|++.
T Consensus        97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~  150 (765)
T PRK10049         97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ  150 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999998998888 88889999899999999999999999999883

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.62  E-value=2.4e-14  Score=112.67  Aligned_cols=130  Identities=12%  Similarity=-0.013  Sum_probs=120.7

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPL---------------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE   67 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   67 (164)
                      ..+...|++++|+.+++++....|.               ...++..+|.++...|++++|+..+++++...|.      
T Consensus       318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------  391 (765)
T PRK10049        318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------  391 (765)
T ss_pred             HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence            3567889999999999999998773               2457788999999999999999999999999999      


Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      +..++..+|.++...|++++|++.+++++..+|++...++.+|.++...|++++|...+++++...|++..
T Consensus       392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999943

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.62  E-value=7.7e-15  Score=92.47  Aligned_cols=92  Identities=20%  Similarity=0.114  Sum_probs=88.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...|++++|+..|+-+...+|.+...|+++|.++..+|+|.+|+..|.+++.++|+      ++...+.+|.|++.
T Consensus        42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d------dp~~~~~ag~c~L~  115 (157)
T PRK15363         42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID------APQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999998      89999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhC
Q 031170           82 QKNVDEALKSYQELEIED   99 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~   99 (164)
                      .|+.+.|.+.|+.++...
T Consensus       116 lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        116 CDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            999999999999999875

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.61  E-value=1.6e-14  Score=96.28  Aligned_cols=98  Identities=12%  Similarity=0.143  Sum_probs=91.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--cHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLM-DRCGE--GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      ||.++...|++++|+..|+++++..|+++.++..+|.++ ...|+  +++|...++++++.+|+      +..++..+|.
T Consensus        79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~------~~~al~~LA~  152 (198)
T PRK10370         79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN------EVTALMLLAS  152 (198)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC------ChhHHHHHHH
Confidence            478899999999999999999999999999999999975 77787  59999999999999999      7899999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      .++..|++++|+.+++++++..|.+..
T Consensus       153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        153 DAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999887654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.61  E-value=1e-13  Score=100.13  Aligned_cols=126  Identities=20%  Similarity=0.191  Sum_probs=112.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..|++++|+..+..+++..|+|+..+...+.++++.++..+|.+.+++++..+|.      ....++.+|+.+++
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~  386 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHh
Confidence            455778899999999999999999999999999999999999999999999999999998      67888899999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      .|++++|+..+...+..+|+++..|..++..|..+|+..++...........
T Consensus       387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999888887666555555555554444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.60  E-value=4e-14  Score=102.22  Aligned_cols=108  Identities=18%  Similarity=0.148  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      +...|...+..|+|++|+..|.++++.+|.      +..++..+|.++...|++++|+..+++++..+|.+..+++.+|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~   78 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT   78 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            556788999999999999999999999998      78899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170          112 IYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus       112 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      ++..+|++++|+..|++++.+.|.+.....++..
T Consensus        79 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  112 (356)
T PLN03088         79 ACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE  112 (356)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999999999999999555445443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=1.7e-14  Score=105.77  Aligned_cols=118  Identities=16%  Similarity=0.162  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170           12 QDARNVFEEILAGNP--LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL   89 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   89 (164)
                      ..-.+.|-.+-...|  .+++++..||.+|...|+|+.|+++|+.|+...|+      +...|..+|-.+..-.+..+|+
T Consensus       411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAI  484 (579)
T KOG1125|consen  411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAI  484 (579)
T ss_pred             HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHH
Confidence            344567777777788  79999999999999999999999999999999999      7899999999999999999999


Q ss_pred             HHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           90 KSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        90 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ..|.+++.+.|...++++++|+.++.+|.+++|+.+|-.++.+.+.
T Consensus       485 sAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  485 SAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999877

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.59  E-value=1.2e-13  Score=84.66  Aligned_cols=105  Identities=18%  Similarity=0.250  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chh
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRP  105 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~  105 (164)
                      ++.++.+|..+...|++++|+..|.++++..|+...   ...+++.+|.++...|++++|+.+|++++..+|++   ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   78 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA   78 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence            467888999999999999999999999998876221   14577889999999999999999999999988875   567


Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++.+|.++...|++++|+..+.+++...|++
T Consensus        79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            8899999999999999999999999999987

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=3.4e-14  Score=97.20  Aligned_cols=104  Identities=18%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      +..-|.-+.+.++|.+|+..|.+||.++|.      ++.++...|.+|.++|.++.|++..+.++.++|....+|..+|.
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~  157 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL  157 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            556778888999999999999999999999      78888899999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170          112 IYSLLDRNAEAKEEFAKYRQLSPKKFEVEG  141 (164)
Q Consensus       112 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~  141 (164)
                      +|.-+|++++|++.|++++.++|++...+.
T Consensus       158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  158 AYLALGKYEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             HHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence            999999999999999999999999943333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=5e-13  Score=91.83  Aligned_cols=128  Identities=16%  Similarity=0.105  Sum_probs=115.1

Q ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc---CHH
Q 031170           10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK---NVD   86 (164)
Q Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~   86 (164)
                      +.+.-+.-++.-+..+|+|++.|..+|.+|+.+|+++.|...|.+++++.|+      ++.++..+|.++..+.   +..
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta  210 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTA  210 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccH
Confidence            4677888899999999999999999999999999999999999999999999      7888888888876554   567


Q ss_pred             HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170           87 EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus        87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      ++...+.+++..+|.+..+.+.+|..+++.|++.+|+..++..++..|.+-+-...+
T Consensus       211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i  267 (287)
T COG4235         211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI  267 (287)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            899999999999999999999999999999999999999999999998884333333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.56  E-value=1.8e-13  Score=107.41  Aligned_cols=129  Identities=16%  Similarity=0.069  Sum_probs=111.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      +.+..+.|+++.|++.|+++++.+|.++.+...++.++...|++++|+.++++++  +|.+.    .......+|.++..
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~----~~~~llalA~ly~~  114 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNI----SSRGLASAARAYRN  114 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCC----CHHHHHHHHHHHHH
Confidence            4567889999999999999999999996555588888889999999999999999  44311    34444455889999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +|++++|+..|+++++.+|+++.++..++.++...++.++|+..+.+++..+|..
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~  169 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV  169 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence            9999999999999999999999999988899999999999999999999999986

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.55  E-value=1.4e-13  Score=84.25  Aligned_cols=101  Identities=18%  Similarity=0.101  Sum_probs=90.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..+++++..+|+...   ...++..+|.+
T Consensus         9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~~~~~   85 (119)
T TIGR02795         9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---APDALLKLGMS   85 (119)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---ccHHHHHHHHH
Confidence            567889999999999999999999887   578999999999999999999999999999887321   25678899999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      +...|++++|+.++++++...|++..+
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            999999999999999999999987653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=7.6e-14  Score=100.76  Aligned_cols=140  Identities=17%  Similarity=0.149  Sum_probs=128.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.+-+.+|++++|.+.|.+++..+....++++++|..+..+|+.++|+++|-++-.+--+      +..+++.++.+|..
T Consensus       497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~  570 (840)
T KOG2003|consen  497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYEL  570 (840)
T ss_pred             CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHH
Confidence            445677899999999999999999999999999999999999999999999998877666      68999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPL  147 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~  147 (164)
                      +.+..+|++++-++...-|+++.++..++.+|.+.|+-.+|..+.-...+..|.+.....|+...+
T Consensus       571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy  636 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY  636 (840)
T ss_pred             hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999977777776643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.55  E-value=4.4e-13  Score=103.53  Aligned_cols=120  Identities=8%  Similarity=0.037  Sum_probs=111.2

Q ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHH
Q 031170           11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALK   90 (164)
Q Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~   90 (164)
                      ..+++.-.......+|.+++++..+|.+....|.+++|...++.++...|+      +..++..++.+..+++++++|+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~  141 (694)
T PRK15179         68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRA  141 (694)
T ss_pred             hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHH
Confidence            344445555556678999999999999999999999999999999999999      89999999999999999999999


Q ss_pred             HHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           91 SYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        91 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+++++..+|++...++.+|.++.+.|++++|++.|++++...|++
T Consensus       142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~  187 (694)
T PRK15179        142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF  187 (694)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999999999999999999999999988887

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.55  E-value=3.7e-14  Score=81.90  Aligned_cols=81  Identities=21%  Similarity=0.345  Sum_probs=62.8

Q ss_pred             cCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170            8 MGKTQDARNVFEEILAGNPL--SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      +|+|++|+.+++++++..|.  +...++.+|.++++.|+|++|+..+++ .+.++.      +....+.+|.+++.+|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~l~~y   74 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLKLGKY   74 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHHTT-H
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHHhCCH
Confidence            57888888888888888885  455677788888888888888888888 666666      566777778888888888


Q ss_pred             HHHHHHHHHH
Q 031170           86 DEALKSYQEL   95 (164)
Q Consensus        86 ~~A~~~~~~~   95 (164)
                      ++|+++++++
T Consensus        75 ~eAi~~l~~~   84 (84)
T PF12895_consen   75 EEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            8888888764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.55  E-value=1.9e-13  Score=79.56  Aligned_cols=98  Identities=28%  Similarity=0.441  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG  110 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  110 (164)
                      +++.+|.++...|++++|+..++++++..|.      ...++..+|.++...+++++|+.++++++...|.+...++.++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   75 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG   75 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence            4566777777777777787777777777776      4566677777777777788888777777777777777777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCC
Q 031170          111 MIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus       111 ~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      .++...|++++|...+.+++...|
T Consensus        76 ~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          76 LAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHhHHHHHHHHHHHHccCC
Confidence            777777777777777777777665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.55  E-value=3.7e-13  Score=90.50  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=114.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |+.++..|+|..|+..++++....|++..+|..+|.+|.+.|++++|...|.+++++.|.      .+.+...+|-.+.-
T Consensus       107 gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L  180 (257)
T COG5010         107 GKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLL  180 (257)
T ss_pred             HHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHH
Confidence            567789999999999999999999999999999999999999999999999999999998      78888899999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      .||++.|..++.++...-+.+..+..+++.+....|++.+|..+..+-
T Consensus       181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            999999999999999888889999999999999999999998875544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.54  E-value=5.6e-13  Score=84.74  Aligned_cols=121  Identities=24%  Similarity=0.198  Sum_probs=102.6

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            6 SEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      ...++...+...++.+++.+|+.   ..+.+.+|.+++..|++++|+..|++++...|+...   ...+.+.+|.++..+
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l---~~~a~l~LA~~~~~~   98 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL---KPLARLRLARILLQQ   98 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH---HHHHHHHHHHHHHHc
Confidence            35788999999999999999998   556788999999999999999999999998755211   245777899999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR  130 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  130 (164)
                      |++++|+..++.+ ...+-.+..+..+|.++...|++++|+..|++++
T Consensus        99 ~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   99 GQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999763 3334456677899999999999999999999874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.53  E-value=1.7e-13  Score=79.80  Aligned_cols=95  Identities=23%  Similarity=0.359  Sum_probs=88.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..++++++..|.++.++..+|.++...+++++|+..++++++..|.      ...++..+|.++.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~   79 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chhHHHHHHHHHH
Confidence            3677889999999999999999999999999999999999999999999999999999988      5678889999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCC
Q 031170           81 LQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      ..|+++.|..++.+++...|.
T Consensus        80 ~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          80 KLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999988763

>PRK15331 chaperone protein SicA; Provisional

Probab=99.52  E-value=7.2e-13  Score=83.99  Aligned_cols=112  Identities=17%  Similarity=0.131  Sum_probs=100.1

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170           24 GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        24 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      +.++..+..+..|.-+..+|++++|...|+-++-.+|.      +...++.+|-++..+++|++|+..|.-+...+++++
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            34445667889999999999999999999999999999      788999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170          104 RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      .+.+..|.++..+|+.+.|+..|..++. .|.+...+..
T Consensus       106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~  143 (165)
T PRK15331        106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK  143 (165)
T ss_pred             CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence            9999999999999999999999999988 4665333333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=1.6e-13  Score=95.31  Aligned_cols=130  Identities=13%  Similarity=0.069  Sum_probs=108.4

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      |+..++++-|+.+|++++.....+++.+.++|.|++-.+++|-++..|++++......+.   ..++|+.+|.+....||
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~---aaDvWYNlg~vaV~iGD  410 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ---AADVWYNLGFVAVTIGD  410 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch---hhhhhhccceeEEeccc
Confidence            444455555555555555555556778888999999999999999999999887653322   37899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      +..|..+|+-++..+|++.+++.++|.+-.+.|+.++|..+++.+....|.-+
T Consensus       411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence            99999999999999999999999999999999999999999999999999873

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.51  E-value=1.8e-13  Score=75.97  Aligned_cols=67  Identities=18%  Similarity=0.295  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-NVDEALKSYQELEIEDP  100 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p  100 (164)
                      ++.+|..+|.+++..|++++|+..|.++++.+|+      +..++..+|.++..+| ++++|+..++++++.+|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3455666666666666666666666666666666      5666666666666666 56666666666666655

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.51  E-value=5.6e-13  Score=87.11  Aligned_cols=117  Identities=21%  Similarity=0.248  Sum_probs=99.0

Q ss_pred             HHHHHhcCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170           18 FEEILAGNP--LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL   95 (164)
Q Consensus        18 ~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   95 (164)
                      +.+.+..++  ....+++.+|..+...|++++|+.+|+++++..|+...   ...++..+|.++...|++++|+.+++++
T Consensus        22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444433  45667899999999999999999999999998765211   2467889999999999999999999999


Q ss_pred             HHhCCCCchhhhhHHHHHHhcCC--------------HHHHHHHHHHHHhhCCCcc
Q 031170           96 EIEDPNDFRPYFCKGMIYSLLDR--------------NAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        96 ~~~~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~l~~~~~~~p~~~  137 (164)
                      +...|.+..++..+|.++...|+              +++|+..+++++...|+++
T Consensus        99 l~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         99 LELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            99999999999999999999887              6789999999999999984

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=1.2e-12  Score=90.62  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=101.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||+-|+..|-++.|.+.|..+......-..+...+..+|....+|++|++.-++..+..+...... ...++..+|..+.
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e-IAqfyCELAq~~~  191 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE-IAQFYCELAQQAL  191 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-HHHHHHHHHHHHh
Confidence            356677777777888888777766555566777777888888888888888888877776533221 2455557777777


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ...+.+.|+..+.+++..+|+...+-+.+|.+....|++..|++.+..++..+|..
T Consensus       192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence            77888888888888888888888888888888888888888888888888887765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.50  E-value=1.4e-12  Score=84.86  Aligned_cols=129  Identities=13%  Similarity=0.101  Sum_probs=106.4

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            6 SEMGKTQDARNVFEEILAGNPLS--FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      +-.+.|..+...+.+.++..+.+  ...++.+|.++...|++++|+..|++++.+.|+...   ...++..+|.++...|
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---~~~~~~~lg~~~~~~g   86 (168)
T CHL00033         10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD---RSYILYNIGLIHTSNG   86 (168)
T ss_pred             ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHHcC
Confidence            34456888888888887777666  556799999999999999999999999998764211   2457889999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHH-------hcCCHH-------HHHHHHHHHHhhCCCcc
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYS-------LLDRNA-------EAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~-------~A~~~l~~~~~~~p~~~  137 (164)
                      ++++|+.++++++...|.....+..+|.++.       ..|+++       +|+.++.+++...|.+.
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999999999999888       677766       66666777888888763

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.50  E-value=5.1e-12  Score=84.67  Aligned_cols=137  Identities=19%  Similarity=0.187  Sum_probs=109.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..++..|+|++|+..|++++...|+.   +.+.+.+|.++...|++++|+..+++.++..|....   ...+++.+|.+
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~~A~Y~~g~~   88 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---ADYALYMLGLS   88 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhhHHHHHHHH
Confidence            567889999999999999999998876   567899999999999999999999999999998543   25677888888


Q ss_pred             HHHcc-----------CHHHHHHHHHHHHHhCCCCchh-----------------hhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170           79 KFLQK-----------NVDEALKSYQELEIEDPNDFRP-----------------YFCKGMIYSLLDRNAEAKEEFAKYR  130 (164)
Q Consensus        79 ~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~-----------------~~~~~~~~~~~~~~~~A~~~l~~~~  130 (164)
                      ++.+.           ...+|+..|+..+...|++..+                 -+..|..|...|.+..|+..++.++
T Consensus        89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~  168 (203)
T PF13525_consen   89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI  168 (203)
T ss_dssp             HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred             HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            76543           3458999999999999997643                 2346888889999999999999999


Q ss_pred             hhCCCcchhhh
Q 031170          131 QLSPKKFEVEG  141 (164)
Q Consensus       131 ~~~p~~~~~~~  141 (164)
                      +..|+......
T Consensus       169 ~~yp~t~~~~~  179 (203)
T PF13525_consen  169 ENYPDTPAAEE  179 (203)
T ss_dssp             HHSTTSHHHHH
T ss_pred             HHCCCCchHHH
Confidence            99999844433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=5.1e-13  Score=97.46  Aligned_cols=105  Identities=17%  Similarity=0.125  Sum_probs=53.2

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      .++..|+|..|+..|.++|+.+|+++..|.+.|.||...|.+..|+...+++++++|+      ....++..|.++..+.
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------~~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------FIKAYLRKGAALRAMK  440 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555554      4444455555555555


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYS  114 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  114 (164)
                      +|++|++.|++++..+|++.++.-....++.
T Consensus       441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  441 EYDKALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            5555555555555555554444434333333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.49  E-value=1.3e-12  Score=90.29  Aligned_cols=107  Identities=13%  Similarity=0.189  Sum_probs=92.3

Q ss_pred             CCHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C
Q 031170           27 LSFEALFENALLM-DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN---D  102 (164)
Q Consensus        27 ~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~  102 (164)
                      .+...++..|..+ +..|+|++|+..|++.++..|+...   .+.+++++|.+|+..|++++|+..|++++..+|+   .
T Consensus       140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~---a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~  216 (263)
T PRK10803        140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY---QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA  216 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence            3566777777765 6679999999999999999998432   1578899999999999999999999999988777   4


Q ss_pred             chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++++.+|.++...|+.++|+..|+++++..|+.
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            6788899999999999999999999999999987

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.49  E-value=2.8e-13  Score=104.54  Aligned_cols=126  Identities=18%  Similarity=0.171  Sum_probs=116.1

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      ..+.+++|++.|.++++.+|.|..+-.++|.++...|++.+|+.+|.+..+.-.+      ...+|+.+|.||..+|+|.
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~lNlah~~~e~~qy~  697 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWLNLAHCYVEQGQYR  697 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceeeeHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999887665      6789999999999999999


Q ss_pred             HHHHHHHHHHHhCC--CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           87 EALKSYQELEIEDP--NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        87 ~A~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      .|++.|+.+++..-  ++..++..+|.++...|.+.+|...+..++...|.+..
T Consensus       698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~  751 (1018)
T KOG2002|consen  698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS  751 (1018)
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence            99999999998753  46788999999999999999999999999999999954

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.2e-12  Score=95.52  Aligned_cols=138  Identities=18%  Similarity=0.154  Sum_probs=119.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCC--------------------------CCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNP--------------------------LSFEALFENALLMDRCGEGEAVIKRLEEA   55 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p--------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a   55 (164)
                      |..+...++++.|+.+|.+++...-                          .-..--...|+.++..|+|.+|+..|.++
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA  384 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA  384 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            4567777888888888888776532                          22233445688999999999999999999


Q ss_pred             HhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           56 LEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      |+.+|+      +...+...|-||.+.|++..|++..+.+++.+|++...++..|.++..+.++++|.+.|++++..+|.
T Consensus       385 Ikr~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  385 IKRDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             HhcCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            999999      78888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHhhh
Q 031170          136 KFEVEGYLRT  145 (164)
Q Consensus       136 ~~~~~~~~~~  145 (164)
                      +.....++..
T Consensus       459 ~~e~~~~~~r  468 (539)
T KOG0548|consen  459 NAEAIDGYRR  468 (539)
T ss_pred             hHHHHHHHHH
Confidence            8555555544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.47  E-value=2e-13  Score=78.83  Aligned_cols=84  Identities=24%  Similarity=0.215  Sum_probs=72.8

Q ss_pred             HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH
Q 031170           41 RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA  120 (164)
Q Consensus        41 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  120 (164)
                      .+|+|+.|+.+++++++..|.+.    ...+++.+|.+++..|+|++|+.++++ .+.+|.+....+.+|.++..+|+++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~   75 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYE   75 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHH
Confidence            36899999999999999999621    256777899999999999999999999 8788888888889999999999999


Q ss_pred             HHHHHHHHH
Q 031170          121 EAKEEFAKY  129 (164)
Q Consensus       121 ~A~~~l~~~  129 (164)
                      +|+.+|.++
T Consensus        76 eAi~~l~~~   84 (84)
T PF12895_consen   76 EAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.47  E-value=1.5e-11  Score=84.43  Aligned_cols=141  Identities=9%  Similarity=0.073  Sum_probs=114.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEAL---FENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..++..|+|++|++.|++++...|..+.+.   +.+|.++.+.+++++|+..+++.++..|+....   ..+++.+|.+
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~~a~Y~~g~~  115 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DYVLYMRGLT  115 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---HHHHHHHHHh
Confidence            4556788999999999999999999987765   889999999999999999999999999986542   6677888877


Q ss_pred             HHHcc---------------C---HHHHHHHHHHHHHhCCCCchh-----------------hhhHHHHHHhcCCHHHHH
Q 031170           79 KFLQK---------------N---VDEALKSYQELEIEDPNDFRP-----------------YFCKGMIYSLLDRNAEAK  123 (164)
Q Consensus        79 ~~~~~---------------~---~~~A~~~~~~~~~~~p~~~~~-----------------~~~~~~~~~~~~~~~~A~  123 (164)
                      +...+               |   ..+|+..|+..+...|++.-+                 -+..|..|.+.|.+..|+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~  195 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV  195 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            64443               1   357889999999999986432                 134578888899999999


Q ss_pred             HHHHHHHhhCCCcchhhhHhhh
Q 031170          124 EEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus       124 ~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      .-++.++...|+.......+..
T Consensus       196 ~r~~~v~~~Yp~t~~~~eal~~  217 (243)
T PRK10866        196 NRVEQMLRDYPDTQATRDALPL  217 (243)
T ss_pred             HHHHHHHHHCCCCchHHHHHHH
Confidence            9999999999998544444333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.47  E-value=3.3e-12  Score=88.36  Aligned_cols=97  Identities=18%  Similarity=0.139  Sum_probs=88.8

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            6 SEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      ...|+|++|+..|++.++.+|++   +.+++.+|.+++..|++++|+..|+++++.+|+...   .+.+++.+|.++..+
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~---~~dAl~klg~~~~~~  230 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK---AADAMFKVGVIMQDK  230 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhHHHHHHHHHHHHc
Confidence            45699999999999999999998   579999999999999999999999999999987443   378889999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchh
Q 031170           83 KNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      |++++|+..|+++++.+|++..+
T Consensus       231 g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        231 GDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHH
Confidence            99999999999999999998754

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=1.9e-12  Score=95.13  Aligned_cols=132  Identities=15%  Similarity=0.092  Sum_probs=76.2

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ...|+..+=..+-.++.+.+|+.+-.|+..|..|.-.|++++|..+|.|+..++|.      ..++|+..|..+.-+|+.
T Consensus       289 ~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~------fgpaWl~fghsfa~e~Eh  362 (611)
T KOG1173|consen  289 YELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT------FGPAWLAFGHSFAGEGEH  362 (611)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc------ccHHHHHHhHHhhhcchH
Confidence            33444444444444444445555555666666666666666666666666666665      556666666666666666


Q ss_pred             HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170           86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus        86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      ++|+.+|..|-+..|....+.+.+|.-|..+++.+-|...|.+++.+.|.+..+...+
T Consensus       363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El  420 (611)
T KOG1173|consen  363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL  420 (611)
T ss_pred             HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh
Confidence            6666666666666666666666666666666666666666666666666664333333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=2e-12  Score=89.50  Aligned_cols=129  Identities=12%  Similarity=0.114  Sum_probs=117.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      ..+|...++|++|+++-+++.+..|..     ...+..++..+....+.+.|+..+.++++.+|+      +.++-..+|
T Consensus       148 l~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG  221 (389)
T COG2956         148 LNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILG  221 (389)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhh
Confidence            357889999999999999999988765     456788999999999999999999999999999      899999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCc-hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPNDF-RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++...|+|++|++.++.+++.+|... .+.-.+..+|.+.|+.++.+..+.++....+..
T Consensus       222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            999999999999999999999999874 556688899999999999999999999888776

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.46  E-value=3.1e-13  Score=75.08  Aligned_cols=67  Identities=30%  Similarity=0.491  Sum_probs=64.3

Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD-RNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~l~~~~~~~p  134 (164)
                      ++.++..+|.+++..|++++|+.+|++++..+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            36788999999999999999999999999999999999999999999999 79999999999999988

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=9.3e-13  Score=93.69  Aligned_cols=141  Identities=20%  Similarity=0.136  Sum_probs=122.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE------------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEAR   69 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   69 (164)
                      +.++...++.+.|+..|++++.++|+...            .+..-|+-.++.|.+..|.+.|..+|.++|++...  +.
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~--na  287 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT--NA  287 (486)
T ss_pred             ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch--hH
Confidence            56777888999999999999999998633            46678889999999999999999999999997655  45


Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170           70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus        70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      -.+..+|.+....|+..+|+.-.+.++.++|....++...|.++..+++|++|++.++++.+.... ...+..+..
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~  362 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLRE  362 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence            667788999999999999999999999999999999999999999999999999999999988755 334444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.45  E-value=2.7e-12  Score=83.57  Aligned_cols=108  Identities=16%  Similarity=0.085  Sum_probs=83.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |.++...|++++|+..|++++...|+.   +.++..+|.++...|++++|+..+++++.+.|.      ....+..+|.+
T Consensus        42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~------~~~~~~~la~i  115 (168)
T CHL00033         42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF------LPQALNNMAVI  115 (168)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHH
Confidence            567888999999999999999887763   458999999999999999999999999999887      45556666666


Q ss_pred             HH-------HccCHH-------HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170           79 KF-------LQKNVD-------EALKSYQELEIEDPNDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        79 ~~-------~~~~~~-------~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  118 (164)
                      +.       ..|+++       +|+.+|++++..+|.+..   ..+..+...|+
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~  166 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGR  166 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcC
Confidence            66       788877       556666667777776553   33343444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.45  E-value=5.2e-12  Score=91.32  Aligned_cols=125  Identities=15%  Similarity=0.034  Sum_probs=68.5

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hccccchhhhhhhHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE----IAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~la~~   78 (164)
                      .++...|++++|...+++++..+|++..++.. +..+...|.+..+.....+++.    ..|.      ...+...+|.+
T Consensus        51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~a~~  123 (355)
T cd05804          51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPD------YWYLLGMLAFG  123 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCC------cHHHHHHHHHH
Confidence            34566677777777777777777777655443 3333333333222222222222    1111      22333345556


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      +..+|++++|+..+++++...|++..++..+|.++...|++++|+.++.+++...|
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            66666666666666666666666665566666666666666666666666665554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.45  E-value=4.5e-12  Score=91.90  Aligned_cols=120  Identities=18%  Similarity=0.178  Sum_probs=108.9

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      .+...++++.|++.++++.+.+|+   +...++.++...++-.+|+..+.++++..|.      ....+...+..+...+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcC
Confidence            455678999999999999998874   6677899999999999999999999999998      6778888999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      +++.|+.+.++++...|.+...|+.++.+|...|++++|+-.++.+-..
T Consensus       249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            9999999999999999999999999999999999999999988866433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=1.3e-11  Score=82.99  Aligned_cols=132  Identities=18%  Similarity=0.049  Sum_probs=119.7

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      ..-.|+.+.|..+++++....|++..+....|..+...|++++|+++|+..+.-+|.      +..++...--+.-.+|+
T Consensus        62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt------~~v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT------DTVIRKRKLAILKAQGK  135 (289)
T ss_pred             HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc------hhHHHHHHHHHHHHcCC
Confidence            345788999999999999999999999999999999999999999999999999998      56666666667778999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      .-+||+.+...++.+++|.++|..++.+|...|++++|.-++++++-+.|-++..-..
T Consensus       136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r  193 (289)
T KOG3060|consen  136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR  193 (289)
T ss_pred             cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998543333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=3.2e-12  Score=88.90  Aligned_cols=129  Identities=15%  Similarity=0.164  Sum_probs=95.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||+||...|-+.+|.+.++..++..| .++.+..++.+|....++..|+..+.+.++..|.      +...+..++.++.
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~------~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF------DVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc------hhhhhhhhHHHHH
Confidence            46777777777788888877777766 4466667777777777777777777777777776      5566667777777


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+++++.|.++|+.+++.+|.+.++.-..|.-|+..++.+.|+.+|++.+.+--.+
T Consensus       302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s  357 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS  357 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC
Confidence            77777777777777777777777777666777777777777777777777665444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.44  E-value=4.9e-12  Score=82.69  Aligned_cols=95  Identities=18%  Similarity=0.193  Sum_probs=82.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..+...|++++|+.+|+++++..|+.   ..++..+|.++...|++++|+..+.++++..|.      ....+..+|.+
T Consensus        42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~  115 (172)
T PRK02603         42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK------QPSALNNIAVI  115 (172)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHH
Confidence            567888999999999999999887664   468999999999999999999999999999998      67778888999


Q ss_pred             HHHccC--------------HHHHHHHHHHHHHhCCCC
Q 031170           79 KFLQKN--------------VDEALKSYQELEIEDPND  102 (164)
Q Consensus        79 ~~~~~~--------------~~~A~~~~~~~~~~~p~~  102 (164)
                      +...|+              +++|++++++++..+|++
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            988877              567777777777777776

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.44  E-value=7.1e-12  Score=98.58  Aligned_cols=129  Identities=17%  Similarity=0.118  Sum_probs=107.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      +.++...|+.++|+.++++++...|........+|.++..+|++++|++.|+++++.+|+      ++.++..++.++..
T Consensus        75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~  148 (822)
T PRK14574         75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQAD  148 (822)
T ss_pred             HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhh
Confidence            356677899999999999999544555555666688999999999999999999999999      67788888999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .++.++|+..++++...+|..... ..++.++...++..+|++.+++++...|++.
T Consensus       149 ~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~  203 (822)
T PRK14574        149 AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSE  203 (822)
T ss_pred             cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999998985543 4455555557777779999999999999983

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.43  E-value=4e-13  Score=73.74  Aligned_cols=60  Identities=28%  Similarity=0.369  Sum_probs=34.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      |..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            445555555555555555555555555555555555555555555555555555555554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.43  E-value=1.2e-12  Score=71.84  Aligned_cols=63  Identities=25%  Similarity=0.380  Sum_probs=37.2

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      .+|..+...|++++|+..|+++++.+|.      +..++..+|.++..+|++++|+.+|++++..+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3455566666666666666666666665      55666666666666666666666666666665554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.43  E-value=5.1e-12  Score=88.45  Aligned_cols=94  Identities=20%  Similarity=0.378  Sum_probs=60.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..|++.+|+..|..++..+|++..+++..|.+|+..|+-.-|+.-+.+.+++-|+      ...+....|.++.+
T Consensus        45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD------F~~ARiQRg~vllK  118 (504)
T KOG0624|consen   45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD------FMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc------HHHHHHHhchhhhh
Confidence            445556666677777777777777766666666666666666666666666666666666      55555566666666


Q ss_pred             ccCHHHHHHHHHHHHHhCCC
Q 031170           82 QKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~  101 (164)
                      +|++++|+.-|.+++..+|+
T Consensus       119 ~Gele~A~~DF~~vl~~~~s  138 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPS  138 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCC
Confidence            66666666666666666554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.42  E-value=4e-12  Score=98.32  Aligned_cols=130  Identities=14%  Similarity=0.156  Sum_probs=77.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPL---SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..++..|+|+.+..+...++...-.   -.+.++.+|.++..+|+|++|..+|.++++.++++     ..-.++.+|++
T Consensus       277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~l~~~GlgQm  351 (1018)
T KOG2002|consen  277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FVLPLVGLGQM  351 (1018)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----ccccccchhHH
Confidence            44455666666666666666654322   23335666666666666666666666666666552     13344556666


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC----CHHHHHHHHHHHHhhCCCc
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD----RNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~A~~~l~~~~~~~p~~  136 (164)
                      |+..|+++.|+.+|+++++..|++.+....+|.+|...+    ..++|..++.+++...|.+
T Consensus       352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d  413 (1018)
T KOG2002|consen  352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD  413 (1018)
T ss_pred             HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence            666666666666666666666666666666666665543    4456666666666666666

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=5.9e-12  Score=89.90  Aligned_cols=130  Identities=22%  Similarity=0.296  Sum_probs=114.7

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.+++..|++++|+..|+++...+|.....+-..|.++...|+++.-..+....+.++..      ...-|+.-+...+
T Consensus       238 lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~------ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  238 LGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY------TASHWFVHAQLLY  311 (564)
T ss_pred             HhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc------chhhhhhhhhhhh
Confidence            4677888888888888888888888888888888888888888888887777777777654      4667777888889


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..+++..|+.+.+++|..+|++.++++..|.++..+|+.++|+-.|+.+..+.|.+
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r  367 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR  367 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence            99999999999999999999999999999999999999999999999999999988

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.4e-12  Score=92.72  Aligned_cols=143  Identities=22%  Similarity=0.266  Sum_probs=124.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh------hhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE------ARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~l   75 (164)
                      +.++...|++++|...--..+++++.+.++++..|.++.-.++.+.|+..|+++++++|+-.+...      ....+...
T Consensus       176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence            578889999999999999999999999999999999999999999999999999999998543221      13455567


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCch----hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhh
Q 031170           76 AQIKFLQKNVDEALKSYQELEIEDPNDFR----PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTP  146 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  146 (164)
                      |+-.++.|.+..|.++|.++|.++|.+..    .+.+++.+...+|+..+|+..++.++.++|..  ...++...
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ikall~ra  328 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKALLRRA  328 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHHHHHHH
Confidence            99999999999999999999999998754    46788899999999999999999999999987  55665543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.41  E-value=8.8e-12  Score=94.47  Aligned_cols=129  Identities=22%  Similarity=0.236  Sum_probs=121.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...+..++|..++.++-+++|-.+..|+..|.++..+|.+.+|...|..++.++|+      .......+|.++..
T Consensus       657 a~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  657 ADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHH
Confidence            345667788899999999999999999999999999999999999999999999999999      88899999999999


Q ss_pred             ccCHHHHHH--HHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALK--SYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|+..-|..  .+..+++.+|.+.++|+.+|.++...|+.++|.++|+.++.+.+.+
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            999888887  9999999999999999999999999999999999999999998877

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.41  E-value=1.2e-11  Score=93.00  Aligned_cols=121  Identities=21%  Similarity=0.203  Sum_probs=101.9

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHhh--ccccchhhhhhhHHHHHHHH
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGE--------GEAVIKRLEEALEI--AEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~la~~   78 (164)
                      ++.+.|+.+|+++++.+|++..++-.++.++.....        ...+.....+++..  +|.      .+.++..+|..
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~------~~~~~~ala~~  429 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV------LPRIYEILAVQ  429 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC------ChHHHHHHHHH
Confidence            347899999999999999999999998887765432        23445555555554  343      45778888999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +...|++++|...+++++..+| +..++..+|.++...|+.++|++.+.+++.++|.+
T Consensus       430 ~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        430 ALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999 47899999999999999999999999999999997

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.41  E-value=2e-11  Score=89.67  Aligned_cols=135  Identities=14%  Similarity=0.088  Sum_probs=101.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-----------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-----------------   64 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------   64 (164)
                      ++++...|++++|+..++++.+..|+++.++..++.++...|+|++|+..+.+..+..+....                 
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999999999999999888777754332110                 


Q ss_pred             -------------------hhhhhhHHHHHHHHHHHcc-------------------------------CHHHHHHHHHH
Q 031170           65 -------------------LKEARDVRFIMAQIKFLQK-------------------------------NVDEALKSYQE   94 (164)
Q Consensus        65 -------------------~~~~~~~~~~la~~~~~~~-------------------------------~~~~A~~~~~~   94 (164)
                                         ....+.+...+|..+...|                               +.+++++..++
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~  319 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ  319 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence                               0002233344455554444                               44555555555


Q ss_pred             HHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           95 LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        95 ~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .++..|+++..++.+|.++...+++++|.++|++++...|++
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~  361 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA  361 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence            555567777778888999999999999999999999999987

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.41  E-value=1.6e-11  Score=86.00  Aligned_cols=137  Identities=14%  Similarity=0.167  Sum_probs=100.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE--------------   67 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------   67 (164)
                      |.+|..+|+..-|+..+.+++.+.|+...+....|.+++++|++++|..-|.+.++-+|+++....              
T Consensus        79 aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l  158 (504)
T KOG0624|consen   79 ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL  158 (504)
T ss_pred             HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence            456677777777777777777777777777777777777777777777777777777765442111              


Q ss_pred             -----------------------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170           68 -----------------------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        68 -----------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  118 (164)
                                                   ....+...+.||...|+...||.-+..+.++..++.+.++.++.+++..|+
T Consensus       159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd  238 (504)
T KOG0624|consen  159 VQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD  238 (504)
T ss_pred             HHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence                                         344555667788888888888888888888877778888888888888888


Q ss_pred             HHHHHHHHHHHHhhCCCcch
Q 031170          119 NAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus       119 ~~~A~~~l~~~~~~~p~~~~  138 (164)
                      .+.++...+.+++++|+...
T Consensus       239 ~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624|consen  239 AENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             HHHHHHHHHHHHccCcchhh
Confidence            88888888888888887733

>TIGR00540 hemY_coli hemY protein

Probab=99.41  E-value=2.6e-11  Score=89.45  Aligned_cols=128  Identities=16%  Similarity=0.078  Sum_probs=115.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhh-hHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEAR-DVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~   80 (164)
                      |.+....|+++.|.+.+.++.+..|+....+...|.+..++|+++.|..++.++.+..|+      .. .+....+.++.
T Consensus        91 glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~------~~l~~~~~~a~l~l  164 (409)
T TIGR00540        91 ALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN------DNILVEIARTRILL  164 (409)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc------CchHHHHHHHHHHH
Confidence            445677899999999999999999988888888999999999999999999999998887      33 45566799999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ..|++++|...++...+..|+++.++..++.++...|++++|.+.+.+..+..+.
T Consensus       165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~  219 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF  219 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999977443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.40  E-value=9.8e-12  Score=91.68  Aligned_cols=119  Identities=9%  Similarity=0.059  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhH--HHHHHHHHHHccCH
Q 031170           12 QDARNVFEEILAGNP----LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDV--RFIMAQIKFLQKNV   85 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~   85 (164)
                      +++.+.+.++....|    +++.++..++..+...|++++|.+.++++++..|++      ...  ...........++.
T Consensus       242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~------~~~~~~~l~~~~~l~~~~~  315 (409)
T TIGR00540       242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD------RAISLPLCLPIPRLKPEDN  315 (409)
T ss_pred             hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------ccchhHHHHHhhhcCCCCh
Confidence            344444445544444    355555555555555555555555555555555542      211  11122222333555


Q ss_pred             HHHHHHHHHHHHhCCCCc--hhhhhHHHHHHhcCCHHHHHHHHH--HHHhhCCCc
Q 031170           86 DEALKSYQELEIEDPNDF--RPYFCKGMIYSLLDRNAEAKEEFA--KYRQLSPKK  136 (164)
Q Consensus        86 ~~A~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~l~--~~~~~~p~~  136 (164)
                      +.+++.++++++..|+++  ..+..+|+++...|++++|.++|+  .+++..|++
T Consensus       316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~  370 (409)
T TIGR00540       316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA  370 (409)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence            555555555555555555  445555555555555555555555  344445544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11906 transcriptional regulator; Provisional

Probab=99.39  E-value=1.8e-11  Score=88.94  Aligned_cols=121  Identities=17%  Similarity=0.174  Sum_probs=111.3

Q ss_pred             CchHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---C------CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170           10 KTQDARNVFEEIL---AGNPLSFEALFENALLMDRC---G------EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus        10 ~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      ..+.|..+|.+++   ..+|+...++..++.|++..   |      .-.+|....+++++++|.      ++.++..+|.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~------Da~a~~~~g~  346 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV------DGKILAIMGL  346 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC------CHHHHHHHHH
Confidence            3468899999999   99999999999999988755   1      334788899999999999      7999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +....++++.|+..|++++..+|+...+++..|++....|+.++|++.++++++++|..
T Consensus       347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            99999999999999999999999999999999999999999999999999999999987

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.39  E-value=4.9e-11  Score=89.52  Aligned_cols=66  Identities=20%  Similarity=0.179  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++.+|+.|...|++++|+.+.+++|..+|..++.++..|.++...|++.+|.+.+..+..+++.|
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            446789999999999999999999999999999999999999999999999999999999999998

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.39  E-value=6.9e-12  Score=93.33  Aligned_cols=133  Identities=26%  Similarity=0.178  Sum_probs=109.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh-h-hhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL-K-EARD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~-~~~~   70 (164)
                      +|.+|...++|.+|+..|++++++        +|.-..++..||.+|..+|++++|..++++++++....... . ....
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            467899999999999999999986        44446678999999999999999999999999986541111 0 1245


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDP--------NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      .+..++.++..++++++|+.++++++++.-        .-.....++|.+|..+|++++|.+.+++++.+.
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            566889999999999999999999987632        223456789999999999999999999999885

>PRK15331 chaperone protein SicA; Provisional

Probab=99.38  E-value=9.2e-12  Score=79.01  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=87.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.-++..|++++|...|+-+...+|.+++.|+++|.++..+++|++|+..|..+..++++      ++...+..|.|++.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~------dp~p~f~agqC~l~  117 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN------DYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC------CCCccchHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999987      67788899999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      .|+...|+.+|+.++.. |.+.
T Consensus       118 l~~~~~A~~~f~~a~~~-~~~~  138 (165)
T PRK15331        118 MRKAAKARQCFELVNER-TEDE  138 (165)
T ss_pred             hCCHHHHHHHHHHHHhC-cchH
Confidence            99999999999999984 5533

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.38  E-value=2.2e-11  Score=88.03  Aligned_cols=120  Identities=14%  Similarity=0.068  Sum_probs=100.2

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA   88 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   88 (164)
                      +....+...+......+|....++..+|.++..+|++++|+..++++++..|+      ...++..+|.++...|++++|
T Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA  167 (355)
T cd05804          94 GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEG  167 (355)
T ss_pred             cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHH
Confidence            34444444444444567777788888999999999999999999999999998      677888999999999999999


Q ss_pred             HHHHHHHHHhCCCCch----hhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           89 LKSYQELEIEDPNDFR----PYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        89 ~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      +.++++++...|.++.    .++.++.++...|++++|+..+++++...|
T Consensus       168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            9999999998775433    355789999999999999999999987666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=1.6e-11  Score=89.05  Aligned_cols=132  Identities=11%  Similarity=0.077  Sum_probs=110.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.+|..+.+..+|++++.++...-|++|.++..+|.+|-+.|+-.+|.+++-...+.+|.      +....-++|..|+.
T Consensus       565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~------nie~iewl~ayyid  638 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------NIETIEWLAAYYID  638 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc------chHHHHHHHHHHHh
Confidence            556777777888888888888888888888888888888888888888877777777777      56777788888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV  139 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~  139 (164)
                      ..-|++|+.+|+++.-+.|+...-.+..+.|+...|++.+|...|+...+..|.+...
T Consensus       639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc  696 (840)
T KOG2003|consen  639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC  696 (840)
T ss_pred             hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence            8899999999999988888877777788899999999999999999999999998443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.38  E-value=2.7e-12  Score=70.97  Aligned_cols=67  Identities=25%  Similarity=0.249  Sum_probs=56.7

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      ++..|++++|+..|++++..+|++..+++.+|.++.+.|++++|...+++++...|+      ++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~------~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD------NPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT------HHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------HHHHHHHHhc
Confidence            356789999999999999999999999999999999999999999999999999888      5666666654

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.3e-11  Score=86.58  Aligned_cols=127  Identities=14%  Similarity=0.079  Sum_probs=94.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK   66 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   66 (164)
                      |..+++.|+|..|...|++++..-+..               ..++.+++.|+.++++|.+|+....+++..+|+     
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-----  289 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-----  289 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-----
Confidence            567788888888888888877753321               234677888888888888888888888888887     


Q ss_pred             hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH-HHHHHHHHHhhCC
Q 031170           67 EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE-AKEEFAKYRQLSP  134 (164)
Q Consensus        67 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-A~~~l~~~~~~~p  134 (164)
                       +.-+++..|.++..+|+|+.|+..|+++++..|.+-.+...+..+.....++.+ ....|.+.+...+
T Consensus       290 -N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  290 -NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             -chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence             677888888888888888888888888888888887777666666655444433 4667777766544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.36  E-value=3.6e-11  Score=81.90  Aligned_cols=103  Identities=12%  Similarity=0.173  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhh
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYF  107 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~  107 (164)
                      -.|..|.-++..|+|.+|...|..-++.+|+....   +.++++||.+++.+|+++.|...|..+++..|.+   +++++
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~---~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT---PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc---chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            37778888889999999999999999999875442   7889999999999999999999999999887765   56799


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|.+...+|+.++|...|.++++..|..
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999987

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.35  E-value=1.7e-11  Score=96.26  Aligned_cols=129  Identities=13%  Similarity=0.001  Sum_probs=112.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-------------hhhh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-------------LKEA   68 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------~~~~   68 (164)
                      ...+...+++++|+.+++..++..|+.+.+++.+|.++.+.+++..+.-.  .++...+.+..             ...+
T Consensus        38 i~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~  115 (906)
T PRK14720         38 IDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGEN  115 (906)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhh
Confidence            34566889999999999999999999999999999999999999888776  77777666321             0112


Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|++++.+++...
T Consensus       116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            368889999999999999999999999999999999999999999999 9999999999998774

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.35  E-value=4.8e-11  Score=89.58  Aligned_cols=122  Identities=18%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE   87 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   87 (164)
                      +.+++.|..+|.++....| ...+|+.-+.+...++..++|+.+++++++.+|.      ....|+++|+++..+++.+.
T Consensus       631 n~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~  703 (913)
T KOG0495|consen  631 NDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEM  703 (913)
T ss_pred             cccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHH
Confidence            3344444444444443322 2244444444445555555555555556666665      56666666666666666666


Q ss_pred             HHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           88 ALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |...|.+.++..|+.+..|+.++.+-...|+.-.|...|.++.-.+|++
T Consensus       704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence            6666666666666666666666666666666666666666666666666

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.2e-11  Score=86.68  Aligned_cols=112  Identities=21%  Similarity=0.231  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh---------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL---------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      ....|+.+++.|+|..|...|+++++.-......         .....++..++.|+.++++|..|+....++|..+|++
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            4567899999999999999999998865422110         0124567789999999999999999999999999999


Q ss_pred             chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170          103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      ..++|..|.++..+|+++.|+..|+++++..|.|..+..-+
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el  331 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL  331 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999999999999999999999999999995444433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.34  E-value=4.7e-11  Score=87.75  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=106.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |+.+...|+.++|...++++++. |.++......+.+  ..+++++++..+++.++..|+      ++..+..+|.++..
T Consensus       270 A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~------~~~l~l~lgrl~~~  340 (398)
T PRK10747        270 AEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD------TPLLWSTLGQLLMK  340 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH
Confidence            56788999999999999999994 5566655555554  458999999999999999998      78899999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      .++|++|.++|++++...|++.. +..++.++...|+.++|..++++++...
T Consensus       341 ~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        341 HGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999999999999888644 5689999999999999999999998765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.33  E-value=1.4e-10  Score=84.34  Aligned_cols=119  Identities=15%  Similarity=0.096  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      |....+++..+..+...|++++|+..+..++...|+      ++.++...+++++..|+.++|++.+++++..+|+....
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence            788899999999999999999999999999999998      78888899999999999999999999999999999999


Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhh
Q 031170          106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRM  150 (164)
Q Consensus       106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~  150 (164)
                      ++++|.++.+.|+..+|+..++..+..+|++...+.++...+...
T Consensus       377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~  421 (484)
T COG4783         377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL  421 (484)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999999955455555444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.33  E-value=6.1e-11  Score=80.77  Aligned_cols=105  Identities=18%  Similarity=0.096  Sum_probs=94.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |.-++..|+|.+|...|..-++.+|++   +.+++.||.+++.+|+|+.|...|..+++..|+....   ++.++.+|.+
T Consensus       148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---pdallKlg~~  224 (262)
T COG1729         148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---PDALLKLGVS  224 (262)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---hHHHHHHHHH
Confidence            345778999999999999999999986   7789999999999999999999999999999885543   7899999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCK  109 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  109 (164)
                      ...+|+.++|...|+++++.+|+...+....
T Consensus       225 ~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         225 LGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999987765443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.33  E-value=9.2e-11  Score=71.66  Aligned_cols=101  Identities=25%  Similarity=0.159  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---Cchhh
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN---DFRPY  106 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~  106 (164)
                      .+++.+|.++...|+.++|+.+|++++........   ...+++.+|..+...|++++|+..+++++...|+   +....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~---~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD---RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            56788899999999999999999999987654221   2567788999999999999999999999988888   66677


Q ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170          107 FCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       107 ~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ..++.++...|+.++|++.+-.++.-.
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l~~la~~  105 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLLEALAET  105 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            788888889999999999888776533

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.32  E-value=1.5e-11  Score=68.94  Aligned_cols=61  Identities=25%  Similarity=0.321  Sum_probs=50.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      |..+|...++|++|++++++++..+|+++.++...|.++..+|++++|+..|+++++..|+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            4567788888888888888888888888888888888888888888888888888888886

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.32  E-value=1.6e-11  Score=78.02  Aligned_cols=89  Identities=21%  Similarity=0.216  Sum_probs=75.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      +|.+++..|++++|+..|+.++...|+.   +.+.+.+|.++...|++++|+..++.. ...+.      .+.++..+|+
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~------~~~~~~~~Gd  126 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF------KALAAELLGD  126 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch------HHHHHHHHHH
Confidence            4678899999999999999999988665   446788999999999999999999763 22222      3667779999


Q ss_pred             HHHHccCHHHHHHHHHHHH
Q 031170           78 IKFLQKNVDEALKSYQELE   96 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~   96 (164)
                      ++...|++++|+..|++++
T Consensus       127 i~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.31  E-value=4.9e-11  Score=83.84  Aligned_cols=128  Identities=16%  Similarity=0.105  Sum_probs=86.7

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +++..+++++.|.+.++.+.+.+.+..-.....+++.+..|  ++.+|...|++..+..+.      .+..+..+|.++.
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~lng~A~~~l  212 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKLLNGLAVCHL  212 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHHHHHHHHHHH
Confidence            45667777777777777777776666666666666666655  467777777777666554      4555667777777


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCH-HHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN-AEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~A~~~l~~~~~~~p~~  136 (164)
                      .+|+|++|.+.+++++..+|++++.+.+++.+....|+. +.+.+++.+....+|..
T Consensus       213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            777777777777777777777777777777777777776 55666777776777766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.31  E-value=2.2e-11  Score=90.86  Aligned_cols=137  Identities=15%  Similarity=0.161  Sum_probs=116.2

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      .++.++|.+.+...+++++..|..++.+-..|..+.-.|+-++|..+...+++.++.      +...|..+|.++-...+
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~------S~vCwHv~gl~~R~dK~   90 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK------SHVCWHVLGLLQRSDKK   90 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc------cchhHHHHHHHHhhhhh
Confidence            456788888999999999999999998888888888889999999999999988887      67888889999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhh
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSR  149 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~  149 (164)
                      |++|++||..|+...|++..++.-++.+..++++++-....-.+.+...|..  -..|+..+++.
T Consensus        91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~--ra~w~~~Avs~  153 (700)
T KOG1156|consen   91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ--RASWIGFAVAQ  153 (700)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh--HHHHHHHHHHH
Confidence            9999999999999999999988888888888888888888888888888887  44555554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.31  E-value=8.5e-11  Score=88.28  Aligned_cols=126  Identities=11%  Similarity=0.080  Sum_probs=121.4

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      ...+++.++|+.+++++++..|+....|..+|+++.++++.+.|...|...++..|.      +...|+.++.+-.+.|.
T Consensus       661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~------~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN------SIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC------CchHHHHHHHHHHHhcc
Confidence            345789999999999999999999999999999999999999999999999999999      89999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..+|...++++.-.+|++...|+....+-...|+.++|...+.++++..|.+
T Consensus       735 ~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  735 LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS  786 (913)
T ss_pred             hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999999999999999999999999998

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.31  E-value=3.2e-10  Score=70.53  Aligned_cols=106  Identities=23%  Similarity=0.294  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch---
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR---  104 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---  104 (164)
                      .+..++.-|.-.++.|+|++|++.|+.+....|...-   ...+.+.++.+|+..+++++|+..+++-++++|.++.   
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y---a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY   85 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY---AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY   85 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence            4567888999999999999999999999999987443   2678889999999999999999999999999998765   


Q ss_pred             hhhhHHHHHHhcCC---------------HHHHHHHHHHHHhhCCCc
Q 031170          105 PYFCKGMIYSLLDR---------------NAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       105 ~~~~~~~~~~~~~~---------------~~~A~~~l~~~~~~~p~~  136 (164)
                      +++..|.+++.+..               ...|...|.++++..|+.
T Consensus        86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            57888988888776               889999999999999988

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.27  E-value=6.2e-11  Score=89.60  Aligned_cols=125  Identities=13%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ...+.++|+++.++++..++++|-.+..|+.+|.+..+.+++..|...|..++..+|+      +..+|..++..|...+
T Consensus       494 ~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWnNls~ayi~~~  567 (777)
T KOG1128|consen  494 LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWNNLSTAYIRLK  567 (777)
T ss_pred             ccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhhhhhHHHHHHh
Confidence            3456799999999999999999999999999999999999999999999999999999      8999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      +-.+|...+.++++.+-.+...|.+...+....|.+++|++.+.+.+.+.-
T Consensus       568 ~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  568 KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            999999999999999988899999999999999999999999999977653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.27  E-value=2.4e-10  Score=88.12  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC  108 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  108 (164)
                      ...++..|+.++..|++++|...+.++|+.+|.      ...++..+|.+|..+|+.+++..++-.+..++|++.+.|..
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~  212 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR  212 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence            455778888999999999999999999999999      89999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170          109 KGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus       109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ++....++|++++|+-+|.+|++..|.+++
T Consensus       213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~  242 (895)
T KOG2076|consen  213 LADLSEQLGNINQARYCYSRAIQANPSNWE  242 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence            999999999999999999999999999954

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.5e-10  Score=79.74  Aligned_cols=98  Identities=20%  Similarity=0.111  Sum_probs=89.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      ||++|+.+|+++.|..-|.+++++.|++++.+..+|.++..+.   ...++...|+++++.+|.      +..+...+|.
T Consensus       162 Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~------~iral~lLA~  235 (287)
T COG4235         162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA------NIRALSLLAF  235 (287)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc------cHHHHHHHHH
Confidence            5889999999999999999999999999999999998766544   335789999999999999      8999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      .++.+|+|.+|+..++..++..|.+.+
T Consensus       236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         236 AAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999999887654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.25  E-value=4.3e-11  Score=84.13  Aligned_cols=124  Identities=17%  Similarity=0.139  Sum_probs=102.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|++.+.+.     ++.++......+++..++++.|.+.++.+-+.+.+      ..-..+..+++.+.
T Consensus       109 A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD------~~l~qLa~awv~l~  177 (290)
T PF04733_consen  109 ATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED------SILTQLAEAWVNLA  177 (290)
T ss_dssp             HHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC------HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHH
Confidence            45677889999999888754     67888888889999999999999999999888776      45555566667666


Q ss_pred             cc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|  .+.+|..+|+......+.++..+..++.++..+|++++|.+.+.+++..+|.+
T Consensus       178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~  234 (290)
T PF04733_consen  178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND  234 (290)
T ss_dssp             HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred             hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence            66  59999999999888878888888999999999999999999999999999998

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.25  E-value=8.5e-11  Score=87.61  Aligned_cols=133  Identities=17%  Similarity=0.104  Sum_probs=107.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-chhh-hhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-NKLK-EARD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~-~~~~   70 (164)
                      +|.+|...|+|++|+..++.++..        .|.-......+|.+|..++++++|+..|++++++.... +... ....
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            467899999999999999999998        55555556679999999999999999999999986421 1111 1356


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPN--------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ++..||.+|...|++++|..+++.++.+...        -...+...+.++..++++++|+.++++++++.
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            6778999999999999999999999876322        22345677888888999999999999998874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.22  E-value=3.3e-11  Score=66.56  Aligned_cols=64  Identities=27%  Similarity=0.288  Sum_probs=38.3

Q ss_pred             HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170           40 DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK  109 (164)
Q Consensus        40 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  109 (164)
                      +..|++++|+..|++++..+|+      +..+++.+|.+++..|++++|...+++++..+|+++..+..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            3556666666666666666665      556666666666666666666666666666666654444433

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.22  E-value=1.3e-10  Score=65.15  Aligned_cols=60  Identities=28%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|+..++|++|+++++.++..+|.++..++.+|.++...|++.+|++.|+++++..|++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            344455555555555555555555555555555555555555555555555555555544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.21  E-value=8.2e-10  Score=68.74  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=87.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |...+..|+|++|++.|+.+....|..   ..+...++.++++.+++++|+..+++-+++.|....   ..-+++..|.+
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vdYa~Y~~gL~   93 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---ccHHHHHHHHH
Confidence            455678999999999999999999875   567899999999999999999999999999998443   25677889999


Q ss_pred             HHHccC---------------HHHHHHHHHHHHHhCCCCch
Q 031170           79 KFLQKN---------------VDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        79 ~~~~~~---------------~~~A~~~~~~~~~~~p~~~~  104 (164)
                      ++.+..               ...|...|++++...|++.-
T Consensus        94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            998877               89999999999999999764

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=4.2e-10  Score=73.52  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=45.7

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYS  114 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  114 (164)
                      -|+-++..|+|++|..-|..|+.+.|.-... .....+...|-+.++++.|+.|+....++|.++|.+..++..++.+|.
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            3444444445555544455554444432110 011122234444444445555555444555544444444444444444


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCc
Q 031170          115 LLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       115 ~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+..+++|++-|++++..+|..
T Consensus       180 k~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcch
Confidence            4444455555555544444444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.20  E-value=8e-10  Score=74.10  Aligned_cols=106  Identities=24%  Similarity=0.323  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch---
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR---  104 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---  104 (164)
                      .+..++..|..++..|+|.+|+..|++++...|....   ...+.+.+|.+++..|+++.|+..+++.+...|+++.   
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence            4678899999999999999999999999999987443   2678889999999999999999999999999999764   


Q ss_pred             hhhhHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCc
Q 031170          105 PYFCKGMIYSLLD-----------RNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       105 ~~~~~~~~~~~~~-----------~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++.+|.++....           ...+|+..|+..+...|+.
T Consensus        81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S  123 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS  123 (203)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred             HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence            6788888876643           3458999999999999998

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=3.2e-10  Score=81.23  Aligned_cols=134  Identities=13%  Similarity=0.047  Sum_probs=75.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh---------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK---------------   66 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------------   66 (164)
                      |..+...|+.++|+-.|+.++.+.|...+.|.++..+|+..|++.+|...-+.+++..|.+-...               
T Consensus       341 G~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r  420 (564)
T KOG1174|consen  341 GRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR  420 (564)
T ss_pred             cHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence            44555556666666666666666666666666666666666655555555555444443311000               


Q ss_pred             ---------------hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           67 ---------------EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        67 ---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                                     ....+...+|.+....|.++.+++.+++.+...|+ ...+..+|.++...+.+++|+++|..+++
T Consensus       421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence                           01223334555555556666666666665555443 23455566666666777777777777777


Q ss_pred             hCCCc
Q 031170          132 LSPKK  136 (164)
Q Consensus       132 ~~p~~  136 (164)
                      ++|++
T Consensus       500 ~dP~~  504 (564)
T KOG1174|consen  500 QDPKS  504 (564)
T ss_pred             cCccc
Confidence            77776

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.19  E-value=2.5e-09  Score=73.54  Aligned_cols=129  Identities=10%  Similarity=0.050  Sum_probs=103.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcC---------------C---cHHHHHHHHHHHhhc
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCG---------------E---GEAVIKRLEEALEIA   59 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~---------------~---~~~A~~~~~~a~~~~   59 (164)
                      +|.+++..++|++|+..+++.++.+|++   +.+++.+|.++...+               +   ..+|+..|++.++..
T Consensus        75 la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y  154 (243)
T PRK10866         75 LIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY  154 (243)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC
Confidence            4678899999999999999999999887   456888888765544               1   246889999999999


Q ss_pred             cccchhhh-----------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhhhHHHHHHhcCCHHHHHHH
Q 031170           60 EDGNKLKE-----------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYFCKGMIYSLLDRNAEAKEE  125 (164)
Q Consensus        60 ~~~~~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~  125 (164)
                      |+..-...           ...--+.+|..|++.|.|..|+.-++.++...|+.   .++++.++..|..+|..++|...
T Consensus       155 P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~  234 (243)
T PRK10866        155 PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV  234 (243)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence            98653211           12223356889999999999999999999998875   56788999999999999999887


Q ss_pred             HHHH
Q 031170          126 FAKY  129 (164)
Q Consensus       126 l~~~  129 (164)
                      ....
T Consensus       235 ~~~l  238 (243)
T PRK10866        235 AKII  238 (243)
T ss_pred             HHHH
Confidence            6544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.18  E-value=9.4e-10  Score=77.38  Aligned_cols=130  Identities=16%  Similarity=0.184  Sum_probs=94.5

Q ss_pred             hcCCchHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHc-CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            7 EMGKTQDARNVFEEILAGN--PLS----FEALFENALLMDRC-GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      ...++++|+++|++++...  .++    ..++..+|.+|... |++++|+.+|++|+......+...........+|.++
T Consensus        86 k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen   86 KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY  165 (282)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence            3448888888888888763  222    34577888888888 8999999999999998766554444466677889999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCc-------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDF-------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ...|+|++|+..|+++....-+..       ..++..+.++...|+...|...+++....+|..
T Consensus       166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999998887543321       234556778888899999999999998888765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.16  E-value=1.9e-09  Score=65.87  Aligned_cols=94  Identities=24%  Similarity=0.240  Sum_probs=80.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |-++-..|+.++|+.+|++++...++.   ..++..+|..+...|++++|+..+++++...|+...   ...+...++.+
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~l~~f~Al~   84 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAALRVFLALA   84 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHHHHHHHHH
Confidence            556788999999999999999976554   557899999999999999999999999998876332   35666778999


Q ss_pred             HHHccCHHHHHHHHHHHHHh
Q 031170           79 KFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~   98 (164)
                      +...|++++|+..+..++..
T Consensus        85 L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999887753

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.15  E-value=1.4e-10  Score=90.32  Aligned_cols=123  Identities=18%  Similarity=0.162  Sum_probs=88.1

Q ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170           10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL   89 (164)
Q Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   89 (164)
                      +.-.|..+|.++..++|++..++-..+..|.+...+++|....-.+-+..|-..    ....|..+|-.|...++...|+
T Consensus       507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~----~k~nW~~rG~yyLea~n~h~aV  582 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA----CKENWVQRGPYYLEAHNLHGAV  582 (1238)
T ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH----HHhhhhhccccccCccchhhHH
Confidence            444555555555555555555555555555555555555554433333333211    3445666888888999999999


Q ss_pred             HHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           90 KSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        90 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|+.++..+|++...|..+|.+|...|++.-|+..|.++..+.|.+
T Consensus       583 ~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  583 CEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            99999999999999999999999999999999999999999999988

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.14  E-value=2.2e-10  Score=65.00  Aligned_cols=73  Identities=19%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-ARDVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      |+-..++..+|.++..+|++++|+++|++++++....+...+ ...++..+|.++...|++++|+++++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            445677899999999999999999999999988433232222 3566778999999999999999999999875

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.12  E-value=5.3e-09  Score=67.74  Aligned_cols=125  Identities=17%  Similarity=0.123  Sum_probs=95.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILA-GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      ||..+.+.|++.+|...|++++. ...+++..+..+++..+..+++.+|...+++..+..|...    .+...+.+|..+
T Consensus        95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r----~pd~~Ll~aR~l  170 (251)
T COG4700          95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR----SPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC----CCCchHHHHHHH
Confidence            35667788888888888888876 4577888888888888888888888888888888877644    356677788888


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR  130 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  130 (164)
                      ..+|.+..|...|+.++...|. +.+....+..+..+|+.+++...+..+.
T Consensus       171 aa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         171 AAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            8888888888888888887665 4455566777777887777665554443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.12  E-value=8.9e-10  Score=83.88  Aligned_cols=97  Identities=18%  Similarity=0.177  Sum_probs=91.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIK--RLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      |.++...|++++|.+.|..++..+|+++.....+|.++.+.|+..-|..  .+..+++++|.      +..+|+.+|.++
T Consensus       691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~------n~eaW~~LG~v~  764 (799)
T KOG4162|consen  691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL------NHEAWYYLGEVF  764 (799)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Confidence            5778889999999999999999999999999999999999999988888  99999999999      899999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCch
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      -++|+.++|..||.-++...+.+|.
T Consensus       765 k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  765 KKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999999877653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.11  E-value=1.6e-09  Score=81.22  Aligned_cols=126  Identities=17%  Similarity=0.161  Sum_probs=119.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+..+|+-++|......++..++.+.-.|-.+|.++....+|++|+.+|+.|+..+|+      +..++..++.+..+
T Consensus        48 GL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   48 GLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQ  121 (700)
T ss_pred             cchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHH
Confidence            556778899999999999999999999999999999999999999999999999999999      89999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      +++++.....-.+.++..|.....|+..+..+...|++..|...++...+..
T Consensus       122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999998887665

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.11  E-value=1.4e-09  Score=82.55  Aligned_cols=132  Identities=12%  Similarity=0.085  Sum_probs=109.1

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH----------------------------HHHcCCcHHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALL----------------------------MDRCGEGEAVIKRLEE   54 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~----------------------------~~~~~~~~~A~~~~~~   54 (164)
                      .||...|+..+|.....+.++ .|.++..|..+|.+                            ....++|+++...++.
T Consensus       432 ~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~  510 (777)
T KOG1128|consen  432 LCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLER  510 (777)
T ss_pred             HHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHH
Confidence            467788888899998888888 44454555544443                            2345788888888888


Q ss_pred             HHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           55 ALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        55 a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      .++++|-      ....|+.+|-+..+.++++.|.++|..++...|++.++|.+++..|...|+-.+|...++++++.+-
T Consensus       511 sl~~npl------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  511 SLEINPL------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             HhhcCcc------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            8988887      6889999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             Ccchhhh
Q 031170          135 KKFEVEG  141 (164)
Q Consensus       135 ~~~~~~~  141 (164)
                      +++.+..
T Consensus       585 ~~w~iWE  591 (777)
T KOG1128|consen  585 QHWQIWE  591 (777)
T ss_pred             CCCeeee
Confidence            6655433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.10  E-value=2.3e-09  Score=70.08  Aligned_cols=106  Identities=17%  Similarity=0.152  Sum_probs=92.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      |.-++..|+|++|...|..+|...|..+.     .+.+.|.++++++.++.|+..+.++|.+.|.      ...++...|
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------y~kAl~RRA  175 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------YEKALERRA  175 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch------hHHHHHHHH
Confidence            45678999999999999999999997644     4668899999999999999999999999998      778888999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY  113 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  113 (164)
                      .+|.++..++.|+.-|.+++..+|....+.-....+-
T Consensus       176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~  212 (271)
T KOG4234|consen  176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP  212 (271)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence            9999999999999999999999998776554444433

>PRK11906 transcriptional regulator; Provisional

Probab=99.09  E-value=4.6e-09  Score=76.69  Aligned_cols=118  Identities=13%  Similarity=0.092  Sum_probs=104.5

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA   88 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   88 (164)
                      .+-.+|.+..++++..+|+|+.++..+|.+....++++.|...|++|+.++|+      .+.+++..|.+.+..|+.++|
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a  391 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEA  391 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHH
Confidence            34568899999999999999999999999999999999999999999999999      899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCchhhhhHHHH-HHhcCCHHHHHHHHHHHHhh
Q 031170           89 LKSYQELEIEDPNDFRPYFCKGMI-YSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        89 ~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~l~~~~~~  132 (164)
                      +..+++++..+|....+-...-++ .+...-.+.|+..|.+-...
T Consensus       392 ~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (458)
T PRK11906        392 RICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETES  436 (458)
T ss_pred             HHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence            999999999999987776665555 55567788999988765443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.09  E-value=3e-09  Score=83.88  Aligned_cols=119  Identities=13%  Similarity=0.035  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHH
Q 031170           13 DARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSY   92 (164)
Q Consensus        13 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~   92 (164)
                      .+++++-..+...|++..+++.+|.||-++|++++|...++++++.+|.      ++.+...+|..|... +.++|+.++
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~------n~~aLNn~AY~~ae~-dL~KA~~m~  172 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD------NPEIVKKLATSYEEE-DKEKAITYL  172 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            4444454444555555555666666666666666666666666666555      445555555555544 555555555


Q ss_pred             HHHHH--------------------hCCCCchhhh--------hHH------------HHHHhcCCHHHHHHHHHHHHhh
Q 031170           93 QELEI--------------------EDPNDFRPYF--------CKG------------MIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        93 ~~~~~--------------------~~p~~~~~~~--------~~~------------~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      .+++.                    .+|.+.+.++        ..+            ..|...+++++++.+|+.++..
T Consensus       173 ~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~  252 (906)
T PRK14720        173 KKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH  252 (906)
T ss_pred             HHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence            55433                    3344333311        112            5566678888888888888888


Q ss_pred             CCCcch
Q 031170          133 SPKKFE  138 (164)
Q Consensus       133 ~p~~~~  138 (164)
                      +|.+..
T Consensus       253 ~~~n~~  258 (906)
T PRK14720        253 DNKNNK  258 (906)
T ss_pred             CCcchh
Confidence            888833

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.09  E-value=1.4e-09  Score=79.08  Aligned_cols=91  Identities=19%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|+++...++-.+|++.+.++++..|.+...+...+..+...++++.|+...++++...|+      ....|..|+.+|.
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~------~f~~W~~La~~Yi  279 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPS------EFETWYQLAECYI  279 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHH
Confidence            4678888899999999999999999999999999999999999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHH
Q 031170           81 LQKNVDEALKSYQELEI   97 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~   97 (164)
                      ..|+++.|+..++.+.-
T Consensus       280 ~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  280 QLGDFENALLALNSCPM  296 (395)
T ss_pred             hcCCHHHHHHHHhcCcC
Confidence            99999999988876543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=2.2e-09  Score=75.91  Aligned_cols=136  Identities=16%  Similarity=0.220  Sum_probs=110.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc--------------cccc---
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA--------------EDGN---   63 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~---   63 (164)
                      +|.|++..|+|++|+..|.-+...+.-+.+.+..++.+++-.|.|.+|.....++-+..              ....   
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~  142 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT  142 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence            46789999999999999999988776677889999999999999999988776642211              0000   


Q ss_pred             ---hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           64 ---KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        64 ---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                         ......+-.+-+|.+.+..-.|++|+..|.+++..+|+....-..++.+|.++.-++-+-+.+.-.++..|+.
T Consensus       143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS  218 (557)
T KOG3785|consen  143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS  218 (557)
T ss_pred             HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence               0000123344578888888999999999999999999998888899999999999999999999999999987

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.08  E-value=1.8e-09  Score=76.00  Aligned_cols=132  Identities=18%  Similarity=0.154  Sum_probs=99.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNP--LS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      |..|-..|+|++|.+.|.++....-  ++    ...+...+.++.+. ++++|+.++++++.+.-..+....-...+..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4567778899999999998866431  22    33456667776666 99999999999999987666555557788899


Q ss_pred             HHHHHHc-cCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           76 AQIKFLQ-KNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        76 a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      |.+|... |++++|+.+|++++......      ...+...+.++...|++++|+..|+++....-
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            9999999 99999999999998864322      23456788999999999999999999987643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=3.7e-09  Score=78.64  Aligned_cols=125  Identities=17%  Similarity=0.132  Sum_probs=104.4

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      +...|+|++|.....+++...|++..+......++++.++|++|+...++-......       ....+..|-|.++++.
T Consensus        22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-------~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-------NSFFFEKAYCEYRLNK   94 (652)
T ss_pred             hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-------chhhHHHHHHHHHccc
Confidence            557899999999999999999999999999999999999999998555443322221       2333789999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV  139 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~  139 (164)
                      .++|+.+++   ..++.+.......|.+++.+|++++|+..|+..++.+.++...
T Consensus        95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~  146 (652)
T KOG2376|consen   95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE  146 (652)
T ss_pred             HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence            999999998   4556667788899999999999999999999998888777443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.06  E-value=9.4e-09  Score=77.44  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=107.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|+.|-..|++++|+++.+++|...|..++.++..|.++...|++.+|...++.+..+++.      +..+....+..++
T Consensus       200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~------DRyiNsK~aKy~L  273 (517)
T PF12569_consen  200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA------DRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh------hHHHHHHHHHHHH
Confidence            4677889999999999999999999999999999999999999999999999999999987      5566667888899


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCch-------hhh--hHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFR-------PYF--CKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~-------~~~--~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      +.|+.++|.+.+..-...+.+...       .|+  --|.+|...|++..|+..|..+.+..
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999999988776554321111       243  35788999999999999999887764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.05  E-value=1.3e-09  Score=76.71  Aligned_cols=98  Identities=15%  Similarity=0.049  Sum_probs=83.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..|+.+|.|++|+++|.+.+..+|.++-.+.+.+.+|+++.+|..|..-++.++.++..      ...++-..|..-..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYSRRMQARES  177 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHHHHHHHHHH
Confidence            567888889999999999999999988888888888999998998888888888888776      56677778888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      +|...+|.+-++.++.+.|++.+.
T Consensus       178 Lg~~~EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  178 LGNNMEAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             HhhHHHHHHhHHHHHhhCcccHHH
Confidence            888888988888888888886654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.02  E-value=2.9e-09  Score=77.65  Aligned_cols=69  Identities=13%  Similarity=0.107  Sum_probs=63.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhh---hHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           24 GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEAR---DVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        24 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      .+|+++.+++++|.+++..|+|++|+..|+++++++|+      ..   .+++.+|.+|..+|++++|+.++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            47889999999999999999999999999999999998      45   35899999999999999999999999987

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=1.9e-08  Score=68.54  Aligned_cols=139  Identities=16%  Similarity=0.135  Sum_probs=116.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +.++.-.|+|.-..+.+.++++.+ |.++.....+|.+..+.|+.+.|..+|+..-+....-.......-+....+.+|.
T Consensus       184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l  263 (366)
T KOG2796|consen  184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL  263 (366)
T ss_pred             HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence            456778899999999999999998 6678888999999999999999999999654432211111113455667889999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhh
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVE  140 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~  140 (164)
                      -.+++.+|...|.+++..+|.++.+....+.|+...|+...|+..++.++...|..+...
T Consensus       264 g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e  323 (366)
T KOG2796|consen  264 GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE  323 (366)
T ss_pred             cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence            999999999999999999999999999999999999999999999999999999874433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.95  E-value=3e-08  Score=60.66  Aligned_cols=95  Identities=23%  Similarity=0.232  Sum_probs=57.9

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ++...|+.+.|++.|.+++...|..+.+|.+.+..+.-+|+.++|++-+++++++..+....  .-.+++..|.+|-.+|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt--acqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT--ACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHHHHhC
Confidence            34555666666666666666666666666666666666666666666666666665443211  2334455666666666


Q ss_pred             CHHHHHHHHHHHHHhCC
Q 031170           84 NVDEALKSYQELEIEDP  100 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p  100 (164)
                      +-+.|..-|+.+.....
T Consensus       130 ~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGS  146 (175)
T ss_pred             chHHHHHhHHHHHHhCC
Confidence            66666666666655533

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.94  E-value=8.4e-09  Score=80.83  Aligned_cols=108  Identities=13%  Similarity=0.014  Sum_probs=83.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |-.|.+.+++.+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.      +....+..+.+...
T Consensus       569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFKEAVMECD  642 (1238)
T ss_pred             cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHHHHHHHHH
Confidence            345667778888888888888888888888888888888888888888888888888887      67777788888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      .|+|.+|+..++..+............++.++.+
T Consensus       643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            8888888888888877655544444444444444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=7.5e-09  Score=69.31  Aligned_cols=91  Identities=19%  Similarity=0.138  Sum_probs=83.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..+.|..|+..|.++|.++|..+..+.+.+.|+++..+|+.+..-..++++++|+      ....++.+|.....
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAHYFLGQWLLQ   90 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHHHHHHHHHHh
Confidence            455677788999999999999999999999999999999999999999999999999998      78889999999999


Q ss_pred             ccCHHHHHHHHHHHHHh
Q 031170           82 QKNVDEALKSYQELEIE   98 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~   98 (164)
                      ...|++|+.+++++...
T Consensus        91 s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   91 SKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hccccHHHHHHHHHHHH
Confidence            99999999999998543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.93  E-value=8.4e-09  Score=75.28  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh---hhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP---YFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ....+..+|..++..|+|++|+.+|++++..+|++..+   |+++|.+|..+|+.++|+..+.+++...
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57889999999999999999999999999999999865   9999999999999999999999999974

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.93  E-value=3.7e-07  Score=62.11  Aligned_cols=134  Identities=16%  Similarity=0.179  Sum_probs=106.0

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      ......|+|++|++.|+.+...+|..   ..+...++.++.+.+++++|+..+++-+++.|.....   .-+.+..|.++
T Consensus        42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~---dY~~YlkgLs~  118 (254)
T COG4105          42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA---DYAYYLKGLSY  118 (254)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh---hHHHHHHHHHH
Confidence            44567899999999999999999876   4578889999999999999999999999999984422   44555777776


Q ss_pred             HHc--------cCHHHHHHHHHHHHHhCCCCchh-----------------hhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           80 FLQ--------KNVDEALKSYQELEIEDPNDFRP-----------------YFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        80 ~~~--------~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      +..        .-..+|+..|+.++...|++.-+                 -...|..|.+.|.+-.|+.-++.++...|
T Consensus       119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~  198 (254)
T COG4105         119 FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP  198 (254)
T ss_pred             hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence            643        23557888888999999985422                 12457788889999999999999998887


Q ss_pred             Ccchh
Q 031170          135 KKFEV  139 (164)
Q Consensus       135 ~~~~~  139 (164)
                      +....
T Consensus       199 ~t~~~  203 (254)
T COG4105         199 DTSAV  203 (254)
T ss_pred             cccch
Confidence            76433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.91  E-value=7.8e-08  Score=77.81  Aligned_cols=150  Identities=14%  Similarity=0.084  Sum_probs=126.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      ..+|...+++++|.++|+.+++........|...|..++.+.+-+.|...+++|++.-|...    +..+.-..|++-++
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhh
Confidence            46788899999999999999999888889999999999999999999999999999988743    45666678999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcccc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGT  155 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  155 (164)
                      .||.+.+...|+..+..+|...+.|......-...|+.+-....|++++.+.-.-..++.++..-+...+.-+.
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999987643322255555544444443333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.5e-07  Score=70.33  Aligned_cols=139  Identities=13%  Similarity=0.076  Sum_probs=107.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh----------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL----------------   65 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------   65 (164)
                      |.|+++.+..++|+..++   ..++.+..+....|+++.++|+|++|.+.|+.+++.+.+..+.                
T Consensus        86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence            567889999999999998   4556666788888999999999999999999987765432210                


Q ss_pred             ---------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC-------chhhhhHHHHHHhcCCHHH
Q 031170           66 ---------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIE--------DPND-------FRPYFCKGMIYSLLDRNAE  121 (164)
Q Consensus        66 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~-------~~~~~~~~~~~~~~~~~~~  121 (164)
                               .......+..|-++...|+|.+|++.+++++..        +.++       ..+...++.++..+|+.++
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence                     113456677889999999999999999999432        1111       1245688999999999999


Q ss_pred             HHHHHHHHHhhCCCcchhhhHh
Q 031170          122 AKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus       122 A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      |...|...++..|.|......+
T Consensus       243 a~~iy~~~i~~~~~D~~~~Av~  264 (652)
T KOG2376|consen  243 ASSIYVDIIKRNPADEPSLAVA  264 (652)
T ss_pred             HHHHHHHHHHhcCCCchHHHHH
Confidence            9999999999999985443333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.87  E-value=8.7e-09  Score=72.65  Aligned_cols=100  Identities=19%  Similarity=0.119  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      +...|+-|+++|+|++|+++|.+++..+|.      ++-.+...|..|+++..+..|..-...++.++.....++-.++.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~  173 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQ  173 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            456889999999999999999999999997      57788899999999999999999999999998888999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170          112 IYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus       112 ~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      +-..+|+..+|...++.++.+.|++.
T Consensus       174 AR~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  174 ARESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             HHHHHhhHHHHHHhHHHHHhhCcccH
Confidence            99999999999999999999999983

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.86  E-value=3.7e-07  Score=65.27  Aligned_cols=135  Identities=19%  Similarity=0.127  Sum_probs=109.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-----------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-----------------   64 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------   64 (164)
                      ++++...|+++.|.....+++...|.++.+......+|+..|+|.+...++.+.-+..--...                 
T Consensus       160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~  239 (400)
T COG3071         160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA  239 (400)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999999999999999999999999988886664321110                 


Q ss_pred             -------------------hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH----------------------------
Q 031170           65 -------------------LKEARDVRFIMAQIKFLQKNVDEALKSYQELEI----------------------------   97 (164)
Q Consensus        65 -------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------------------   97 (164)
                                         ...++.+...++.-+...|+.++|.+..+++++                            
T Consensus       240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~  319 (400)
T COG3071         240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEK  319 (400)
T ss_pred             hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHH
Confidence                               001355555667777888888888888777554                            


Q ss_pred             ---hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           98 ---EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        98 ---~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                         ..|+++..+..+|.++...+.|.+|..+|+.+++..|..
T Consensus       320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~  361 (400)
T COG3071         320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA  361 (400)
T ss_pred             HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence               356677888899999999999999999999999999887

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.85  E-value=1.2e-08  Score=73.46  Aligned_cols=133  Identities=14%  Similarity=0.018  Sum_probs=106.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      ||..|+-.|+|+.|+..-+.-+.+....      -.++.++|+++...|+++.|+++|++.+.+.-.-+.........+-
T Consensus       201 LGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYS  280 (639)
T KOG1130|consen  201 LGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS  280 (639)
T ss_pred             cCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            5677888999999999988776653322      3468899999999999999999999987765544443335677788


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC------CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIED------PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      +|+.|....++++||.++++-+.+-      .....+.+.+|..+...|..++|+.+..+.++..
T Consensus       281 LgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  281 LGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999998865542      2345678999999999999999999988887663

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.82  E-value=4.7e-07  Score=58.92  Aligned_cols=130  Identities=15%  Similarity=0.125  Sum_probs=107.3

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE-IAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      .=+++....-..+.+...|.. .-.+.+|+...+.|++.||...|++++. ++..      +...++-+++..+..+++.
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~------d~a~lLglA~Aqfa~~~~A  141 (251)
T COG4700          69 KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAH------DAAMLLGLAQAQFAIQEFA  141 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC------CHHHHHHHHHHHHhhccHH
Confidence            345666666666777777765 4577899999999999999999999988 3444      5778888999999999999


Q ss_pred             HHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170           87 EALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus        87 ~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      .|...++++.+.+|.  .++..+..+.++.-.|++..|...|+.+++..|.. ..+.++..
T Consensus       142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e  201 (251)
T COG4700         142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAE  201 (251)
T ss_pred             HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHH
Confidence            999999999998876  56778899999999999999999999999999885 33444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.81  E-value=9.9e-09  Score=58.14  Aligned_cols=66  Identities=20%  Similarity=0.068  Sum_probs=55.0

Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIE---DPN----DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~p~----~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ...++..+|.+|..+|++++|+.+|++++..   .++    -...+..+|.++...|++++|+.++++++++.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4567889999999999999999999999865   222    23457889999999999999999999998763

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.81  E-value=9e-08  Score=61.71  Aligned_cols=89  Identities=25%  Similarity=0.226  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170           11 TQDARNVFEEILAGNPLSFEALFENALLMDRCG----------EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      |+.|.+.++.....+|.+++.++.=|.++.++.          -+++|+.-|++++.++|+      ...++..+|..+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~------~hdAlw~lGnA~t   80 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN------KHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHH
Confidence            688999999999999999998887776665443          345678888899999998      7888888888887


Q ss_pred             Hcc-----------CHHHHHHHHHHHHHhCCCCchh
Q 031170           81 LQK-----------NVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        81 ~~~-----------~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      ..+           -|++|..+|+++...+|++...
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y  116 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY  116 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence            654           3888889999999999987653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.80  E-value=3.8e-07  Score=74.31  Aligned_cols=60  Identities=12%  Similarity=-0.002  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR  130 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  130 (164)
                      .+..+...|.+.|++++|...|++..... ..+...|..+...|.+.|+.++|++.|.+..
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34445555555555555555555544321 1123445555555555666666666666554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.8e-08  Score=67.55  Aligned_cols=95  Identities=15%  Similarity=-0.000  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      +..-|..++.-.+|+.|+..|.++|.+.|.      ...++...+.++++.++|+.+..-..+++...|+...+++.+|.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            344567788888999999999999999998      67888899999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhh
Q 031170          112 IYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       112 ~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ...+...+++|+..|.++.++
T Consensus        87 ~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   87 WLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHhhccccHHHHHHHHHHHH
Confidence            999999999999999999655

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.79  E-value=1.4e-07  Score=74.27  Aligned_cols=128  Identities=16%  Similarity=0.152  Sum_probs=71.9

Q ss_pred             hhhhcCCchHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc---cccch--------------
Q 031170            4 LLSEMGKTQDARNVFEEILAG--NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA---EDGNK--------------   64 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~--------------   64 (164)
                      .|...|+.++|+++|+++...  .|+ ...+..+...+...|..++|..+|+...+..   |+...              
T Consensus       400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~  478 (697)
T PLN03081        400 GYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL  478 (697)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence            455556666666666665543  232 2334444445555555555555555544321   11000              


Q ss_pred             -----------hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           65 -----------LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        65 -----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                                 ..+....|..+...+...|+++.|...+++++...|.+...+..++.+|...|++++|.+.++.....
T Consensus       479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence                       00023445555566666677777777777777777777777777777777777777777777766544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=6.4e-07  Score=61.17  Aligned_cols=122  Identities=18%  Similarity=0.121  Sum_probs=93.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|.+.....     .+.++.-.-..|+.+..+.+-|...+++..+++.+        ..+..+|..|.+
T Consensus       115 a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--------~tLtQLA~awv~  181 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--------ATLTQLAQAWVK  181 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------HHHHHHHHHHHH
Confidence            45678889999998887763     45566666667888888999999999998888764        233334443332


Q ss_pred             ----ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 ----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                          .+.+..|.-+|+......|..+..+..++.++..+|++++|...++.++..++++
T Consensus       182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD  240 (299)
T ss_pred             HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence                3468888888888888777778888888889999999999999999999988887

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.78  E-value=6.5e-07  Score=72.97  Aligned_cols=121  Identities=12%  Similarity=-0.008  Sum_probs=55.9

Q ss_pred             hhhcCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----ccccchhhhhhhHHHHHHHHH
Q 031170            5 LSEMGKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGEGEAVIKRLEEALEI----AEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~la~~~   79 (164)
                      |.+.|++++|+.+|+++.... .-+...|..+...+.+.|++++|...+.+....    .|+       ...+..+...|
T Consensus       517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-------~vTynaLI~ay  589 (1060)
T PLN03218        517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-------HITVGALMKAC  589 (1060)
T ss_pred             HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHHHH
Confidence            344445555555554443321 112334444444444555555555555444331    121       23333444455


Q ss_pred             HHccCHHHHHHHHHHHHHhC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           80 FLQKNVDEALKSYQELEIED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      .+.|++++|.+.|+...+.. +.+...|..+...|.+.|++++|+..|......
T Consensus       590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            55555555555555555443 223344444555555555555555555555443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.77  E-value=3.8e-07  Score=71.86  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=75.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      ...|.+.|+.++|..+|+++.+  | +...|..+...|.+.|+.++|+..|++..+.....     +...+..+...+..
T Consensus       367 i~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-----d~~T~~~ll~a~~~  438 (697)
T PLN03081        367 VDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-----NHVTFLAVLSACRY  438 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHhc
Confidence            4568889999999999999865  3 55789999999999999999999999988754221     13333444455555


Q ss_pred             ccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170           82 QKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFA  127 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~  127 (164)
                      .|..++|..+|+...+..+-  +...+..+..++.+.|+.++|.+.++
T Consensus       439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~  486 (697)
T PLN03081        439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR  486 (697)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence            56666666666555442211  11223333444444444444444433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.74  E-value=9.1e-08  Score=63.59  Aligned_cols=102  Identities=21%  Similarity=0.241  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC  108 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  108 (164)
                      ...++..|..|-..|=++-|.--|.+++.+.|.      .+.+...+|..+...|+++.|.+.|..+++.+|...-++++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN  138 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  138 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence            345667777777777777888888888888887      67777778877778888888888888888888887777888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          109 KGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +|..+..-|++.-|.+-+.+-...+|+|
T Consensus       139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785         139 RGIALYYGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             cceeeeecCchHhhHHHHHHHHhcCCCC
Confidence            8887777888888888777777777777

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.74  E-value=4e-07  Score=68.40  Aligned_cols=125  Identities=25%  Similarity=0.235  Sum_probs=101.7

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE   87 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   87 (164)
                      ..+.+.|.+++....+..|+..-..+..|.++...|+.++|++.|++++.....-...  ..-....+|.++..+.+|++
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql--~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQL--HHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhH--HHHHHHHHHHHHHHHchHHH
Confidence            4567889999999999999999999999999999999999999999998643321111  34556689999999999999


Q ss_pred             HHHHHHHHHHhCCCCch-hhhhHHHHHHhcCCH-------HHHHHHHHHHHhhCC
Q 031170           88 ALKSYQELEIEDPNDFR-PYFCKGMIYSLLDRN-------AEAKEEFAKYRQLSP  134 (164)
Q Consensus        88 A~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~-------~~A~~~l~~~~~~~p  134 (164)
                      |..++....+.+.-+.. ..+..|.++.+.|+.       ++|...+.++-....
T Consensus       324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            99999999986443322 246778899999998       889999988866544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.74  E-value=2.1e-07  Score=70.51  Aligned_cols=87  Identities=10%  Similarity=0.030  Sum_probs=77.1

Q ss_pred             chHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170           11 TQDARNVFEEILAG--NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA   88 (164)
Q Consensus        11 ~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   88 (164)
                      ...+.+...+++..  +|.++.++..+|..+...|++++|...+++++.+.|+       ..++..+|.++...|++++|
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~~G~~~eA  472 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYELKGDNRLA  472 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHH
Confidence            34566666666664  7788899999999999999999999999999999986       67899999999999999999


Q ss_pred             HHHHHHHHHhCCCCch
Q 031170           89 LKSYQELEIEDPNDFR  104 (164)
Q Consensus        89 ~~~~~~~~~~~p~~~~  104 (164)
                      +..|++++.++|.++.
T Consensus       473 ~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        473 ADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHhcCCCCch
Confidence            9999999999999886

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1.7e-07  Score=66.55  Aligned_cols=134  Identities=13%  Similarity=0.039  Sum_probs=101.7

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSF-EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      +....+|+.|+..++-....+-... ..-..+|.|++..|+|++|+..|.-+...+..      +...++.+|-+++-.|
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~------~~el~vnLAcc~FyLg  105 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA------PAELGVNLACCKFYLG  105 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC------CcccchhHHHHHHHHH
Confidence            5667899999999998876554333 45667899999999999999999998885544      5788999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCC---------------------------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           84 NVDEALKSYQELEIEDPN---------------------------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~---------------------------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|.+|.....++.+. |-                           ..+-.+.++.++...-.+++|+..+++++..+|+.
T Consensus       106 ~Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey  184 (557)
T KOG3785|consen  106 QYIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY  184 (557)
T ss_pred             HHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence            999998887775332 21                           11223456667777778999999999999999886


Q ss_pred             chhhhHhhh
Q 031170          137 FEVEGYLRT  145 (164)
Q Consensus       137 ~~~~~~~~~  145 (164)
                      .....++.+
T Consensus       185 ~alNVy~AL  193 (557)
T KOG3785|consen  185 IALNVYMAL  193 (557)
T ss_pred             hhhHHHHHH
Confidence            433344433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=5.9e-07  Score=62.57  Aligned_cols=125  Identities=18%  Similarity=0.063  Sum_probs=88.7

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ++..+|++|++++..-....|.+-..+..+|.||....+|..|.++|++.....|.      .....+..++..+..+.+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~------~~qYrlY~AQSLY~A~i~   94 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE------LEQYRLYQAQSLYKACIY   94 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH------HHHHHHHHHHHHHHhccc
Confidence            67788999999999999999999999999999999999999999999999999887      444444445555544444


Q ss_pred             HHHHHHHHHHHH------------------------------hCC--CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           86 DEALKSYQELEI------------------------------EDP--NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        86 ~~A~~~~~~~~~------------------------------~~p--~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ..|+........                              .-|  ++.......|.+.++.|++++|+.-|+.++...
T Consensus        95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen   95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS  174 (459)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence            444443332111                              112  334455566777777777777777777777665


Q ss_pred             CCc
Q 031170          134 PKK  136 (164)
Q Consensus       134 p~~  136 (164)
                      .-+
T Consensus       175 Gyq  177 (459)
T KOG4340|consen  175 GYQ  177 (459)
T ss_pred             CCC
Confidence            444

>PLN03077 Protein ECB2; Provisional

Probab=98.70  E-value=6.2e-07  Score=72.21  Aligned_cols=122  Identities=16%  Similarity=0.065  Sum_probs=60.8

Q ss_pred             hhhhcCCchHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAG--NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      .|...|+.++|+++|+++...  .|+. ..+..+...+.+.|.+++|..+|+...+..+-..    ....+..+..++.+
T Consensus       563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P----~~~~y~~lv~~l~r  637 (857)
T PLN03077        563 GYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP----NLKHYACVVDLLGR  637 (857)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHh
Confidence            345556666666666655543  2332 2233333445555555556555555553221100    12333344444555


Q ss_pred             ccCHHHHHHH--------------------------------HHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           82 QKNVDEALKS--------------------------------YQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        82 ~~~~~~A~~~--------------------------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      .|++++|.+.                                .+++++..|++...+..++.+|...|++++|.+..+..
T Consensus       638 ~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M  717 (857)
T PLN03077        638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM  717 (857)
T ss_pred             CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence            5555555444                                44455555555555555555565666666655555544


Q ss_pred             H
Q 031170          130 R  130 (164)
Q Consensus       130 ~  130 (164)
                      .
T Consensus       718 ~  718 (857)
T PLN03077        718 R  718 (857)
T ss_pred             H
Confidence            3

>PLN03077 Protein ECB2; Provisional

Probab=98.69  E-value=9.1e-07  Score=71.27  Aligned_cols=121  Identities=15%  Similarity=0.136  Sum_probs=96.6

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc--cccchhhhhhhHHHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA--EDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ..|.+.|+.++|...|+..    +.+...|..+...|...|+.++|+..|++..+..  |+       ...+..+-..+.
T Consensus       532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-------~~T~~~ll~a~~  600 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-------EVTFISLLCACS  600 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------cccHHHHHHHHh
Confidence            5688899999999999986    5677899999999999999999999999988754  43       344445556788


Q ss_pred             HccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           81 LQKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ..|.+++|..+|+...+..+-  +...+..+..++.+.|+.++|.+.+++. ...|+
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            999999999999998854333  2345677888888899999998888775 34444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.69  E-value=2.1e-06  Score=57.19  Aligned_cols=128  Identities=25%  Similarity=0.311  Sum_probs=79.0

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCCcHHHHHHHHHHHhhccc-cchhhhhhhHHHHHHHHHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENAL-LMDRCGEGEAVIKRLEEALEIAED-GNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~~   81 (164)
                      .....+++..++..+..++...+.+.......+. ++...|++++|...+.+++...|. ..    ........+..+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  179 (291)
T COG0457         104 LLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE----LAEALLALGALLEA  179 (291)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc----hHHHHHHhhhHHHH
Confidence            3445556666777777776666655444444444 666777777777777776664441 00    23333444444666


Q ss_pred             ccCHHHHHHHHHHHHHhCCC-CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           82 QKNVDEALKSYQELEIEDPN-DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      .++++.|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.
T Consensus       180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            66777777777777766666 4666666666666676777777777777766665

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=1.4e-06  Score=58.60  Aligned_cols=135  Identities=16%  Similarity=0.144  Sum_probs=96.5

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHc-CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEA------LFENALLMDRC-GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~------~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      ++..++++|+.++++++.+..+-...      +..+|.+|..- .++++|+.+|+++-+-........+.....+..|..
T Consensus        84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y  163 (288)
T KOG1586|consen   84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY  163 (288)
T ss_pred             hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence            45568888888888888876654433      34678777655 788889999999888766544332233455567777


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCch-------hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhh
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFR-------PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVE  140 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~  140 (164)
                      ....++|.+|+..|+++....-++.-       -++..|.+++-..+.-.+...+++....+|.....+
T Consensus       164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            78889999999999998876555432       234556777777888888888888888888864433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.68  E-value=6.3e-08  Score=48.56  Aligned_cols=40  Identities=18%  Similarity=0.111  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG  110 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  110 (164)
                      ++..+|..|...|++++|++.|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4455566666666666666666666666666655555544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.64  E-value=1.3e-06  Score=70.73  Aligned_cols=130  Identities=15%  Similarity=0.047  Sum_probs=81.0

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSF-----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      .++...|++++|...+++++...|...     .+...+|.++...|++++|...+++++......+...........+|.
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            455667788888888888776544321     234566777777888888888887777665433222222334456677


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCC--------chhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPND--------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ++...|++++|..++++++......        ...+..+|.++...|++++|...+.+++..
T Consensus       540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            7777777777777777766542110        112334566666677777777777776654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.64  E-value=1.6e-06  Score=61.00  Aligned_cols=125  Identities=13%  Similarity=0.119  Sum_probs=101.2

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEA-VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      .+.+..+.|..+|.++.+..+-...+|...|.+....++..+ |..+|+.+++..|.      ...+|....+.+...|+
T Consensus        12 ~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d   85 (280)
T PF05843_consen   12 RRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLND   85 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-
T ss_pred             HHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCc
Confidence            344558899999999997767778899999999888555555 99999999999998      78888888899999999


Q ss_pred             HHHHHHHHHHHHHhCCCCc---hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           85 VDEALKSYQELEIEDPNDF---RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+.|...|++++..-|...   ..|-.....-...|+.+....+.+++....|.+
T Consensus        86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            9999999999998866655   355556666666899999999999999999886

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.64  E-value=4.9e-06  Score=55.36  Aligned_cols=127  Identities=25%  Similarity=0.362  Sum_probs=110.1

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAGNP---LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ++...|+++.|...+.+++...|   .........+..+...+++++|+..+.+++...+..     .......++..+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  213 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYL  213 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHH
Confidence            57789999999999999988777   355666777777889999999999999999998862     1567778999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ..+++..|+..+..++...|.....+...+..+...+..+++...+.+++...|.
T Consensus       214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999986677777888777788899999999999999986

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.63  E-value=3.7e-08  Score=46.48  Aligned_cols=32  Identities=28%  Similarity=0.241  Sum_probs=28.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHH
Q 031170           18 FEEILAGNPLSFEALFENALLMDRCGEGEAVI   49 (164)
Q Consensus        18 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~   49 (164)
                      |+++|+.+|+++.+|+.+|.++...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67888889999999999999999999888885

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.63  E-value=5.1e-08  Score=71.22  Aligned_cols=101  Identities=11%  Similarity=-0.003  Sum_probs=71.5

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ..+..++|+.|+..|.++|.++|++...+-..+..+++.+++..|+.-+.++++.+|.      ...+++..|......+
T Consensus        13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen   13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT------YIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch------hhheeeeccHHHHhHH
Confidence            3455567777777777777777777777777777777777777777777777777776      5666667777777777


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKG  110 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~  110 (164)
                      .+.+|...|++.....|+++.+....-
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence            777777777777777777766544433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=2.4e-06  Score=62.91  Aligned_cols=123  Identities=14%  Similarity=0.080  Sum_probs=103.8

Q ss_pred             hcCCchHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            7 EMGKTQDARNVFEEILAGNPLS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      ...+.+.+.++|+.++++-|+.    ...|...|...+.+.+...|...+..|+-..|.       .......-.+-.+.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL  450 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQL  450 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHH
Confidence            4578999999999999999964    667888899999999999999999999999997       33333444566778


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++++.+...|++-+.-.|.+..+|...|.+-..+|+.+.|..+|.-+++....+
T Consensus       451 ~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld  504 (677)
T KOG1915|consen  451 REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD  504 (677)
T ss_pred             hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence            889999999999999999999999998888888999999999998888877655

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.62  E-value=2.8e-06  Score=52.19  Aligned_cols=99  Identities=22%  Similarity=0.286  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc----hhhh
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF----RPYF  107 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~  107 (164)
                      +...|....+.|+.++|++.|.+++.+.|.      .+.++...++.+--+|+.++|+.-++++++..-...    .++.
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v  119 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV  119 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            445678889999999999999999999998      789999999999999999999999999999854433    3578


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|.+|...|+.+.|..-|..+-.+-...
T Consensus       120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  120 QRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            89999999999999999999987776554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.61  E-value=1.2e-07  Score=47.60  Aligned_cols=42  Identities=24%  Similarity=0.252  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      .++..+|.++...|++++|+..|+++++.+|+      +..++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~------~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD------DPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------CHHHHHHhhh
Confidence            56777788888888888888888888888887      6677776664

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.61  E-value=7.1e-08  Score=70.49  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY  113 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  113 (164)
                      .-+.-.+.-+.++.|+..+.++|+++|+      +..++-..+..+++.+++..|+.-+.++++.+|.....++..|.++
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            3456778889999999999999999998      7777778899999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170          114 SLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR  144 (164)
Q Consensus       114 ~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~  144 (164)
                      ...+++.+|...|+......|++......+.
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence            9999999999999999999999954444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.60  E-value=2.4e-06  Score=58.25  Aligned_cols=106  Identities=19%  Similarity=0.173  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh--
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP--  105 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--  105 (164)
                      .+..++.-|...++.|+|++|+..|+.+....|...-   ...+.+.++..+++.++++.|+...++-+..+|.++.+  
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~---~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY---SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            4667899999999999999999999999999887433   26788899999999999999999999999999988764  


Q ss_pred             -hhhHHHHHHh--------cCCHHHHHHHHHHHHhhCCCc
Q 031170          106 -YFCKGMIYSL--------LDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       106 -~~~~~~~~~~--------~~~~~~A~~~l~~~~~~~p~~  136 (164)
                       ++..|.+++.        ..-..+|+..++..+...|+.
T Consensus       110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence             6677777766        233567889999999999998

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.58  E-value=5.7e-06  Score=59.39  Aligned_cols=123  Identities=17%  Similarity=0.107  Sum_probs=107.5

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ...|+|.+|+....+.-+-.+...-++..-+..-.+.|+.+.+-.++.++-+..++.     ...+...++.+....||+
T Consensus        95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-----~l~v~ltrarlll~~~d~  169 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-----TLAVELTRARLLLNRRDY  169 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-----hHHHHHHHHHHHHhCCCc
Confidence            457999999999999877666666667777789999999999999999999985542     366777899999999999


Q ss_pred             HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      +.|..-..+++...|.++..+.....+|...|++.+...++.+..+..
T Consensus       170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~  217 (400)
T COG3071         170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG  217 (400)
T ss_pred             hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999888876554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=1.2e-06  Score=58.42  Aligned_cols=97  Identities=20%  Similarity=0.184  Sum_probs=87.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..|-+.|-+.-|.-.|.+++.+.|+-++++..+|..+...|+|+.|.+.|...++++|.      ..-+....|..++=
T Consensus        72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~------y~Ya~lNRgi~~YY  145 (297)
T COG4785          72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALYY  145 (297)
T ss_pred             cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc------chHHHhccceeeee
Confidence            445667788889999999999999999999999999999999999999999999999998      66777788888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCch
Q 031170           82 QKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      -|+++-|..-+.+--..+|+++-
T Consensus       146 ~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         146 GGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             cCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999998888999875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.56  E-value=8.3e-08  Score=69.32  Aligned_cols=132  Identities=17%  Similarity=0.069  Sum_probs=90.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCC-------------cHHHH-------HHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGN------PLSFEALFENALLMDRCGE-------------GEAVI-------KRLEE   54 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~-------------~~~A~-------~~~~~   54 (164)
                      ||.++-.+|.|++|+.+..+-+...      -....+++++|.+|...|+             .+++.       ++|..
T Consensus       101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e  180 (639)
T KOG1130|consen  101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME  180 (639)
T ss_pred             ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence            4566777889999988887766542      2245689999999988773             23344       44444


Q ss_pred             HHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170           55 ALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAK  128 (164)
Q Consensus        55 a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~  128 (164)
                      -+++....++.....+++-.+|+.|+..|+|+.|+.+-+.-+.+...      ...++-++|.++...|+++.|+++|+.
T Consensus       181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            44444333333334556667888889999999999888776654322      234567888899999999999999888


Q ss_pred             HHhh
Q 031170          129 YRQL  132 (164)
Q Consensus       129 ~~~~  132 (164)
                      .+.+
T Consensus       261 tl~L  264 (639)
T KOG1130|consen  261 TLNL  264 (639)
T ss_pred             HHHH
Confidence            7654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=1.2e-06  Score=61.01  Aligned_cols=132  Identities=8%  Similarity=-0.014  Sum_probs=103.6

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----------------hccccc-
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE----------------IAEDGN-   63 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~-   63 (164)
                      ||.||....+|..|.++|+++-...|......+-.+..+.+.+.+..|+.......+                ...++- 
T Consensus        50 LgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~  129 (459)
T KOG4340|consen   50 LGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLP  129 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCc
Confidence            477899999999999999999999998888777777888888888887766544332                111100 


Q ss_pred             --------hh-hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           64 --------KL-KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        64 --------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                              .+ ..........|-+.++.|+++.|.+-|+.++...--.+..-++++.+++..|+++.|+.+....+..
T Consensus       130 g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  130 GSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             chHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence                    00 0124555667888999999999999999999998888888899999999999999999888777654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.54  E-value=3e-06  Score=66.26  Aligned_cols=124  Identities=17%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ...+++.+|.....++++.+|+.+.+....|.+++++|+.++|..+++..-...++      +...+..+-.+|..+|+.
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~------D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT------DDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC------chHHHHHHHHHHHHHhhh
Confidence            45678999999999999999999999999999999999999999777766555555      456666788999999999


Q ss_pred             HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++|..+|++++..+|+ .+.++.+=.+|.+-+.+.+-...--+..+..|++
T Consensus        94 d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~  143 (932)
T KOG2053|consen   94 DEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR  143 (932)
T ss_pred             hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999 7776666677777666665544444444566665

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.53  E-value=1.4e-06  Score=56.30  Aligned_cols=87  Identities=22%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170           45 GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ----------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYS  114 (164)
Q Consensus        45 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  114 (164)
                      |+.|.+.++.....+|.      +...+...|..+..+          .-+++|+.-|++++.++|+..++++.+|.+|.
T Consensus         7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            67888899999999998      566666666555433          34678899999999999999999999999988


Q ss_pred             hcC-----------CHHHHHHHHHHHHhhCCCcc
Q 031170          115 LLD-----------RNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus       115 ~~~-----------~~~~A~~~l~~~~~~~p~~~  137 (164)
                      ..+           .+++|..+|+++...+|.+.
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            733           37889999999999999983

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.9e-06  Score=58.37  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc--------cccch----hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIA--------EDGNK----LKEARDVRFIMAQIKFLQKNVDEALKSYQELE   96 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   96 (164)
                      ..++...|+-++..|+|.+|...|..|+..-        |....    .......+...++|++..|+|-++++....++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            4456678889999999999999998887643        22111    11135566788999999999999999999999


Q ss_pred             HhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           97 IEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        97 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..+|.+..+++.+|.++...=+.++|.+.|.+++.++|.-
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            9999999999999999999999999999999999999975

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=6.6e-06  Score=57.16  Aligned_cols=146  Identities=21%  Similarity=0.163  Sum_probs=102.8

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH--HHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA--QIKF   80 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la--~~~~   80 (164)
                      ......|++.+|...|..++...|.+.++...++.++...|+.+.|...+...-.....       .......+  ..+.
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-------~~~~~l~a~i~ll~  214 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-------KAAHGLQAQIELLE  214 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-------hHHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999998877664322222       11111122  2233


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccch
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND  157 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  157 (164)
                      ......+. ..+++.+..+|.+..+.+.++..+...|+.++|.+.|-..++.+-.. ....--...+..+..|+..+
T Consensus       215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~D  289 (304)
T COG3118         215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPAD  289 (304)
T ss_pred             HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCC
Confidence            33333322 23455677789999999999999999999999999999999887554 12222223344445555433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=7.6e-06  Score=56.04  Aligned_cols=128  Identities=14%  Similarity=0.058  Sum_probs=100.4

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      .++.++.+++-|....+++...+-+-.-....-+++-+..|  +...|.-+|+..-...|.      .+.....++.+..
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~------T~~llnG~Av~~l  218 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP------TPLLLNGQAVCHL  218 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC------ChHHHccHHHHHH
Confidence            46778888999999999998876543333333334444433  677899999999886555      4777778999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHH-HHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK-EEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~-~~l~~~~~~~p~~  136 (164)
                      .+|+|++|...++.++..++++++.+.++..+-...|...++. +.+.+....+|..
T Consensus       219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  219 QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999998888888887765 4666777777876

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.46  E-value=2.2e-05  Score=49.77  Aligned_cols=97  Identities=27%  Similarity=0.227  Sum_probs=71.1

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhhccccchhhh----------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           36 ALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE----------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      |......++.+.++..+++++.+.........                ...+...++..+...|++++|+..+++++..+
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            44455667777777778887777643221110                23444567888889999999999999999999


Q ss_pred             CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170          100 PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       100 p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      |.+..++..+..++...|+..+|+..|.+....
T Consensus        93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.45  E-value=1.6e-07  Score=44.27  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=21.7

Q ss_pred             HHHHHHhCCCCchhhhhHHHHHHhcCCHHHHH
Q 031170           92 YQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK  123 (164)
Q Consensus        92 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~  123 (164)
                      |+++|+.+|+++.+|+.+|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56666667777777777777777777666664

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.44  E-value=3.7e-06  Score=59.21  Aligned_cols=102  Identities=18%  Similarity=0.083  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCchhhhh
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-QKNVDEALKSYQELEIEDPNDFRPYFC  108 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~  108 (164)
                      -+|..+.....+.+..+.|..+|.+|++..+.      ...++...|.+.+. .++.+.|.+.|+.+++..|.+...|..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~   75 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC------TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE   75 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            36777778888888899999999999865544      57788889999666 677777999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170          109 KGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus       109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      ....+...|+.+.+..+|++++..-|.+.
T Consensus        76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   76 YLDFLIKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence            99999999999999999999999987774

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.43  E-value=9.5e-07  Score=41.45  Aligned_cols=30  Identities=23%  Similarity=0.388  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170           72 RFIMAQIKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      +..+|.+++..|++++|+++|++++..+|+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            344444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.43  E-value=8.3e-07  Score=41.74  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      .+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45566666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.40  E-value=1.6e-05  Score=50.49  Aligned_cols=86  Identities=22%  Similarity=0.246  Sum_probs=69.1

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc
Q 031170            6 SEMGKTQDARNVFEEILAGNPLS----------------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN   63 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   63 (164)
                      ...++.+.++..+++++....++                      ..+...++..+...|++++|+..+++++..+|.  
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~--   94 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY--   94 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--
Confidence            45678999999999999986432                      233456777888999999999999999999998  


Q ss_pred             hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           64 KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        64 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                          +..++..+..++...|+...|+..|++...
T Consensus        95 ----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   95 ----DEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             -----HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence                788999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.39  E-value=9.6e-06  Score=65.75  Aligned_cols=133  Identities=14%  Similarity=0.030  Sum_probs=100.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh--hhhhhHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL--KEARDVRF   73 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~   73 (164)
                      |.++...|++++|...+++++......      ..++..+|.++...|++++|...+++++.........  ......+.
T Consensus       498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  577 (903)
T PRK04841        498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR  577 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            456778999999999999998753321      2356678999999999999999999999875432110  00123345


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCC-----CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPN-----DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      .+|.++...|++++|...+.+++.....     ....+..++.++...|++++|...+.++..+.+
T Consensus       578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            7799999999999999999998875332     133445678888899999999999999977643

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=1.9e-05  Score=53.26  Aligned_cols=104  Identities=16%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCc------h
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-KNVDEALKSYQELEIEDPNDF------R  104 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~------~  104 (164)
                      +...+.+ ++..++.+|+.++++++++..+.+...--...+..+|.+|... .++++|+.+|+++-.-.....      .
T Consensus        77 YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK  155 (288)
T KOG1586|consen   77 YVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK  155 (288)
T ss_pred             HHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence            3333344 4455889999999999999877554333345566899999877 999999999999987654422      2


Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          105 PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .++..+..-.+.+++.+|+..|.++....-++
T Consensus       156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34555666667999999999999998776555

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.38  E-value=9.9e-07  Score=41.48  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=21.5

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170           70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      .++..+|.++..+|++++|+.+|+++++.+|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35666777777777777777777777777665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.34  E-value=1.8e-06  Score=40.48  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      +.+++.+|.++..+|++++|+..++++++++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            467899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.31  E-value=2e-05  Score=58.46  Aligned_cols=124  Identities=19%  Similarity=0.066  Sum_probs=97.1

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh-------------------hh
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL-------------------KE   67 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------~~   67 (164)
                      +..+++.-++.-.++++++|+++++|..++.=  ...-..+|..+++++++.....-..                   ..
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~  257 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV  257 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence            45688899999999999999999999988752  2334577888888887765332110                   01


Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ...+...+|.|..+.|+.++|++.++..++.+|.  ...++.++..++...+.+.++...+.+.-++
T Consensus       258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            1334557899999999999999999999998886  4567889999999999999999999987544

The molecular function of this protein is uncertain.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=1.8e-05  Score=56.13  Aligned_cols=122  Identities=18%  Similarity=0.040  Sum_probs=75.6

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-ccccchhhhhhhHHHHHHHHHHHc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEI-AEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      ++...|++.+|....+++++..|.+.-++..--.+++-.|+.+.-...+++.+.. +++.. .  ...+.-+++..+...
T Consensus       112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-~--~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-C--YSYVHGMYAFGLEEC  188 (491)
T ss_pred             HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-H--HHHHHHHHHhhHHHh
Confidence            4456678888888888888888887666666556666667666666666666655 33310 0  122233556666666


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAK  128 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~  128 (164)
                      |-|++|.+...++++++|.+.=+....+-++...|+++++.+...+
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            7777777777777777666555555555555555555555555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.28  E-value=3.2e-05  Score=57.26  Aligned_cols=123  Identities=13%  Similarity=0.138  Sum_probs=81.4

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ..++++..|..+|++++..+..+...|...+.+-++......|..++.+|+.+-|.      ....|+....+-...|+.
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR------VdqlWyKY~ymEE~LgNi  157 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR------VDQLWYKYIYMEEMLGNI  157 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch------HHHHHHHHHHHHHHhccc
Confidence            45667788888888888888888888888888888888888888888888888877      456666666666667777


Q ss_pred             HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ..|...|++-+...|+ ..+|......-...++++.|.++|.+-+-.+|+
T Consensus       158 ~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~  206 (677)
T KOG1915|consen  158 AGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK  206 (677)
T ss_pred             HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence            7777777777666554 223333333333344444444444444444443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.27  E-value=9e-07  Score=62.40  Aligned_cols=90  Identities=19%  Similarity=0.077  Sum_probs=71.2

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      ....|++++|++.|..+|.++|.....+-..+.++++.+++..|+.-+..++.++|+      ...-+...|.....+|+
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg~  197 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLGN  197 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhhc
Confidence            456678888888888888888888888888888888888888888888888888887      55556667777778888


Q ss_pred             HHHHHHHHHHHHHhCC
Q 031170           85 VDEALKSYQELEIEDP  100 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p  100 (164)
                      |++|...+..+.+++-
T Consensus       198 ~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  198 WEEAAHDLALACKLDY  213 (377)
T ss_pred             hHHHHHHHHHHHhccc
Confidence            8888888888877643

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.27  E-value=1.4e-05  Score=52.33  Aligned_cols=120  Identities=19%  Similarity=0.153  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170           13 DARNVFEEILAGNPLSFEA---LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL   89 (164)
Q Consensus        13 ~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   89 (164)
                      +.+...++....+|...-+   -..++..+.+.+++++|+..++.++....+...   ..-+...+|.+.+.+|.+++|+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l---k~l~~lRLArvq~q~~k~D~AL  146 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL---KALAALRLARVQLQQKKADAAL  146 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH---HHHHHHHHHHHHHHhhhHHHHH
Confidence            6777788888888777554   456889999999999999999999976443211   2445568999999999999999


Q ss_pred             HHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           90 KSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        90 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +.+...-.. .=.......+|.++...|+.++|+..|.+++...+..
T Consensus       147 ~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         147 KTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            988664332 1112234578999999999999999999999997554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.24  E-value=5.5e-06  Score=59.21  Aligned_cols=131  Identities=13%  Similarity=0.016  Sum_probs=91.7

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLS-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      +.+....++.+++.+-.-.+.....+     ..+...++..+.-.+.++++++.|+++++.....+++.-...+...+|.
T Consensus        91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs  170 (518)
T KOG1941|consen   91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS  170 (518)
T ss_pred             HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence            34444556666666665555543322     2456668888888888888888898888887665544334567778888


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCC----C------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPN----D------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~----~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ++....|+++|+.+..++..+...    +      ..+++.++..+...|+...|.++++++.++.
T Consensus       171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            888888999988888888765321    1      2345677888888888888888888886664

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.8e-05  Score=55.87  Aligned_cols=105  Identities=16%  Similarity=0.063  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK  109 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  109 (164)
                      .-+..-|+-|++..+|..|+..|.+.|+..-.+.+.  +...+...|-+.+-.|+|..|++-..+++..+|.+..+++.-
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl--navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL--NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            346678889999999999999999999875443333  455566888899999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          110 GMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       110 ~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +.++..+.++++|+.++...+.++...
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999999888888888776665443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.21  E-value=0.0001  Score=48.39  Aligned_cols=96  Identities=19%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      +|..++..+++++|+..++.++..-.+.   .-+-..++.+..++|++|+|+..+.....-+-       ........|+
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-------~~~~~elrGD  167 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-------AAIVAELRGD  167 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-------HHHHHHHhhh
Confidence            3667888999999999999998753332   22456899999999999999988776433211       1344557899


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      ++..+|+-++|+..|++++...+...
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHccCChH
Confidence            99999999999999999999874443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=7.5e-05  Score=50.88  Aligned_cols=97  Identities=20%  Similarity=0.145  Sum_probs=84.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHh--------cCCCCHH----------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc
Q 031170            2 ARLLSEMGKTQDARNVFEEILA--------GNPLSFE----------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGN   63 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~----------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   63 (164)
                      |.-++..|+|.+|...|..++.        ..|..++          .+.+..+|++..|+|-++++.....++..|.  
T Consensus       185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~--  262 (329)
T KOG0545|consen  185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG--  262 (329)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc--
Confidence            4567889999999999998865        3666543          4668889999999999999999999999999  


Q ss_pred             hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           64 KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        64 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                          +..+++..|......=+..+|..-|.+++..+|.-..
T Consensus       263 ----nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  263 ----NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             ----hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence                7889999999999999999999999999999887544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.17  E-value=0.0001  Score=60.71  Aligned_cols=99  Identities=11%  Similarity=0.063  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CchhhhhH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN--DFRPYFCK  109 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~  109 (164)
                      +..|.-+|...+++++|.++|+..++.+..      ...+|..+|..++.+++-+.|...+.+|+..-|.  +....-.-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence            444555555566666666666666665553      3556666666666666666666666666665555  34444455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          110 GMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       110 ~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +.+.++.|+.+.+...|.-.+.-+|..
T Consensus      1607 AqLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred             HHHHhhcCCchhhHHHHHHHHhhCccc
Confidence            555556666666666666666666555

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.1e-05  Score=56.88  Aligned_cols=94  Identities=14%  Similarity=0.013  Sum_probs=82.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      |.-|+..++|..|+..|.+.|+..-.+++    .|.+.+-+.+..|+|..|+.-..++++.+|.      ...+++.-|.
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~------h~Ka~~R~Ak  161 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT------HLKAYIRGAK  161 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc------hhhhhhhhhH
Confidence            45688889999999999999998766544    4778999999999999999999999999999      8888999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCC
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      |++.+..++.|..+.+..+..+..
T Consensus       162 c~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999999999999888766443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.15  E-value=1.9e-05  Score=56.55  Aligned_cols=133  Identities=15%  Similarity=0.036  Sum_probs=104.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh--hh--hhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL--KE--ARD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~--~~~   70 (164)
                      |+..+..++.++++++.|+.+++...++      .+++..+|.++....++++|..+..++.++..+.+..  ..  ...
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            4677888899999999999999875443      3457789999999999999999999999986543311  11  245


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDP------NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      +++.++..+-.+|....|.++.+++.++.-      -....+..+|.+|...|+.+.|..-|+.+....
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            566788899999999999999988866532      223446678999999999999999999987654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.14  E-value=2.3e-05  Score=61.52  Aligned_cols=92  Identities=20%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170           39 MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        39 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  118 (164)
                      ....+++.+|.....+.++..|+      ...+....|.+.+++|..++|..+++..-...+++...+-.+-.+|..+|+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~   92 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK   92 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence            34668899999999999999998      677888899999999999999988887777777777777788899999999


Q ss_pred             HHHHHHHHHHHHhhCCCc
Q 031170          119 NAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       119 ~~~A~~~l~~~~~~~p~~  136 (164)
                      .++|+..|++++..+|..
T Consensus        93 ~d~~~~~Ye~~~~~~P~e  110 (932)
T KOG2053|consen   93 LDEAVHLYERANQKYPSE  110 (932)
T ss_pred             hhHHHHHHHHHHhhCCcH
Confidence            999999999999999994

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.07  E-value=1.9e-06  Score=60.79  Aligned_cols=95  Identities=19%  Similarity=0.139  Sum_probs=86.2

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           36 ALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      +.-.+..|++++|++.+..++.+.|.      ....+...+.++++++++..|+.-+..++.++|+....+-..+.....
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl  194 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL  194 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence            34456778999999999999999998      777888999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCc
Q 031170          116 LDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       116 ~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +|+|.+|.+.|..+.+++-+.
T Consensus       195 lg~~e~aa~dl~~a~kld~dE  215 (377)
T KOG1308|consen  195 LGNWEEAAHDLALACKLDYDE  215 (377)
T ss_pred             hhchHHHHHHHHHHHhccccH
Confidence            999999999999998887443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.04  E-value=1.3e-05  Score=37.48  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhcc
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAE   60 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~   60 (164)
                      |+.+|.++..+|++++|+.+|+++++++|
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            34444444444444444444444444433

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.02  E-value=0.00032  Score=51.04  Aligned_cols=131  Identities=15%  Similarity=0.117  Sum_probs=87.9

Q ss_pred             cCCchHHHHHHHH-HHhcCCCCHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            8 MGKTQDARNVFEE-ILAGNPLSFEALFENALLMDR---------CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         8 ~~~~~~A~~~~~~-~l~~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      .|+.++|++++.. +....+.+++.+...|.+|..         ....++|+..|.++....|+       .-.-..++.
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-------~Y~GIN~At  267 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-------YYSGINAAT  267 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-------ccchHHHHH
Confidence            7999999999999 666678889999999987742         23467899999999999875       333445555


Q ss_pred             HHHHccCHHHHHHHHHHHH--------Hh-CCCCchhhh---hHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170           78 IKFLQKNVDEALKSYQELE--------IE-DPNDFRPYF---CKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~--------~~-~p~~~~~~~---~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      ++...|.-.+...-.+++.        +. .-.....++   .++.+....|+.++|+..++++++..|..+.....+..
T Consensus       268 LL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n  347 (374)
T PF13281_consen  268 LLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN  347 (374)
T ss_pred             HHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence            6666664333322222221        11 111112222   34556666999999999999999999988765554443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=98.02  E-value=0.00017  Score=41.88  Aligned_cols=77  Identities=22%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170           14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQ   93 (164)
Q Consensus        14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   93 (164)
                      .+..+++.+..+|++.++.+.+|..+...|++++|++.+-.+++.+++..    ...+...+-.++...|.-+.-...|+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~----~~~ar~~ll~~f~~lg~~~plv~~~R   82 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE----DDAARKRLLDIFELLGPGDPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC----CCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc----ccHHHHHHHHHHHHcCCCChHHHHHH
Confidence            45678888999999999999999999999999999999999999887643    24455555566666666554444444


Q ss_pred             H
Q 031170           94 E   94 (164)
Q Consensus        94 ~   94 (164)
                      +
T Consensus        83 R   83 (90)
T PF14561_consen   83 R   83 (90)
T ss_dssp             H
T ss_pred             H
Confidence            3

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.00  E-value=1.9e-05  Score=36.90  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      .+++.+|.+|..+|++++|+.+|+++++.+|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478899999999999999999999999988863

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.99  E-value=1.9e-05  Score=36.53  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=13.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      +.+|.++...|++++|+..|++++...|+
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            34444444444444444444444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.93  E-value=0.00011  Score=55.57  Aligned_cols=93  Identities=15%  Similarity=0.083  Sum_probs=76.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      |+++...|+.++|++.|++++.....-.+    .++.++.++.-+.+|++|..++.++.+.+...     ..-+.+..|-
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-----ka~Y~Y~~a~  348 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-----KAFYAYLAAA  348 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-----HHHHHHHHHH
Confidence            67888999999999999998864444333    46789999999999999999999999987772     2445557899


Q ss_pred             HHHHccCH-------HHHHHHHHHHHHhC
Q 031170           78 IKFLQKNV-------DEALKSYQELEIED   99 (164)
Q Consensus        78 ~~~~~~~~-------~~A~~~~~~~~~~~   99 (164)
                      ++...++.       ++|...+.++....
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            99999999       89999998876553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.00047  Score=47.07  Aligned_cols=126  Identities=18%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      ..|...++|++|...+.++++-+.++      ..++...+.+..+...+.++..+++++....-..+.+.. ...-+..+
T Consensus        39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt-AAmaleKA  117 (308)
T KOG1585|consen   39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT-AAMALEKA  117 (308)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch-HHHHHHHH
Confidence            34566789999999999998655443      334566777888899999999999999998765544422 33333445


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCc------hhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPNDF------RPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      --.....+.+.|+.+|++++.....+.      +.+-..+.++.....+.+|-..+.+-
T Consensus       118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe  176 (308)
T KOG1585|consen  118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE  176 (308)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence            555667799999999999887644432      23445667778888888876666654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.88  E-value=2.9e-05  Score=35.92  Aligned_cols=32  Identities=19%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      ++++.+|.++...|++++|+..|+++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            47889999999999999999999999999986

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.00043  Score=49.42  Aligned_cols=123  Identities=15%  Similarity=0.031  Sum_probs=96.3

Q ss_pred             hhhhhcCCchHHHHHHHHHHhc-CCCCHHH---HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAG-NPLSFEA---LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      ..++.+|+.+.-...+++++.. +|+.|-.   .-.++-.+.+.|-|++|.+...+++++++.      ..-+...++.+
T Consensus       145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHV  218 (491)
T KOG2610|consen  145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF------DCWASHAKAHV  218 (491)
T ss_pred             hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc------chHHHHHHHHH
Confidence            3567889999999999999988 6766433   334566788999999999999999999997      67777789999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCC----CchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           79 KFLQKNVDEALKSYQELEIEDPN----DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      +...++++++.++..+.-..-..    ....|...+.++.+.+.++.|+++|.+-+-
T Consensus       219 lem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~  275 (491)
T KOG2610|consen  219 LEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIW  275 (491)
T ss_pred             HHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence            99999999999998774332211    112355678888889999999999987653

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.87  E-value=0.00078  Score=51.86  Aligned_cols=135  Identities=16%  Similarity=0.092  Sum_probs=102.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcC-CCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc------------hh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGN-PLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN------------KL   65 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~-p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~   65 (164)
                      |+.|...|+.+.|..+|+++.+.. +.-   ..+|..-|..-+...+++.|+.+++.|........            ..
T Consensus       394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl  473 (835)
T KOG2047|consen  394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL  473 (835)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence            567888899999999999998864 222   55788888888888899999999988877632211            11


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..+..+|...+++....|-++.....|++++.+---.+....+.|..+.....++++...|++.+.+.|-.
T Consensus       474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p  544 (835)
T KOG2047|consen  474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP  544 (835)
T ss_pred             HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence            22456777788888888888888888888888766677777777777777777888888888887776543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.84  E-value=0.00031  Score=44.94  Aligned_cols=88  Identities=15%  Similarity=0.088  Sum_probs=67.3

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ...++.+++..++..+-.+.|+.+.+-..-|++++..|+|++|+..|+.+....|.      .+.+.-.++.|++.+||.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~------~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG------FPYAKALLALCLYALGDP   94 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHHcCCh
Confidence            34568888999998888889999999999999999999999999999998777776      566666788888888875


Q ss_pred             HHHHHHHHHHHHhCC
Q 031170           86 DEALKSYQELEIEDP  100 (164)
Q Consensus        86 ~~A~~~~~~~~~~~p  100 (164)
                      .= ..+..+++...+
T Consensus        95 ~W-r~~A~evle~~~  108 (160)
T PF09613_consen   95 SW-RRYADEVLESGA  108 (160)
T ss_pred             HH-HHHHHHHHhcCC
Confidence            41 122345555543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.83  E-value=0.00021  Score=53.25  Aligned_cols=130  Identities=11%  Similarity=0.036  Sum_probs=105.0

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      ..|+.-.|-.-...++...|.+|......+.++...|.|+.+...+.-+-..-..      -..+...+-...+..|.|+
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s------~~~~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT------TDSTLRCRLRSLHGLARWR  374 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC------CchHHHHHHHhhhchhhHH
Confidence            4577777888888999999999999999999999999999998887655444333      2344455567788899999


Q ss_pred             HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170           87 EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR  144 (164)
Q Consensus        87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~  144 (164)
                      .|....+-.+...-.+++.....+..-..+|-++++...+++++.++|..  ..++..
T Consensus       375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~--~~g~v~  430 (831)
T PRK15180        375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET--QSGWVN  430 (831)
T ss_pred             HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh--ccccee
Confidence            99999999888777778877777777788999999999999999999876  444443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.83  E-value=3.8e-05  Score=57.00  Aligned_cols=114  Identities=10%  Similarity=-0.019  Sum_probs=88.6

Q ss_pred             chhhhhcCCchHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-ccc--cc------
Q 031170            2 ARLLSEMGKTQDARNVFEEI-LAGNPL--------SFEALFENALLMDRCGEGEAVIKRLEEALEI-AED--GN------   63 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--~~------   63 (164)
                      ++.++-.|+|.+|.+.+... +...|.        ..-+|.++|.++++.|.|.-+..+|.++++. +..  ++      
T Consensus       247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            34567789999998887643 334444        2234678999999999999999999999961 110  00      


Q ss_pred             -h--hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           64 -K--LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        64 -~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                       .  ....-.+.+..|..|...|+.-.|.+||.++...+-.++..|+.++.+..+
T Consensus       327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence             0  001356778899999999999999999999999999999999999998877

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.82  E-value=5e-05  Score=36.11  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=9.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHH
Q 031170           74 IMAQIKFLQKNVDEALKSYQE   94 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~   94 (164)
                      .+|.+|...|+|++|+.+|++
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            444444455555555555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.79  E-value=4.4e-05  Score=36.32  Aligned_cols=30  Identities=30%  Similarity=0.337  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhcc
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAE   60 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~   60 (164)
                      ++..+|.++...|+|++|+.+|++++.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            477899999999999999999999776544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.78  E-value=0.00037  Score=45.78  Aligned_cols=103  Identities=16%  Similarity=0.057  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCch--
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP--NDFR--  104 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~--  104 (164)
                      -.++..+|..|.+.|+.++|++.|.++.+.....+.   ....++.+-.+.+..++|.....+..++-..-.  .+..  
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~---~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH---KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            346778999999999999999999998876644333   478888888888899999999998888755432  2222  


Q ss_pred             --hhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170          105 --PYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus       105 --~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                        .....|..+...+++.+|...|-.+.....
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence              234557777778999999988888765554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.78  E-value=0.0031  Score=46.06  Aligned_cols=128  Identities=13%  Similarity=0.059  Sum_probs=92.2

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc---cccchhhhhhhHHHHHHHHHHHcc
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA---EDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ..|..+.|+.+-+++-...|.-+.++...-......|+|+.|+++++......   ++.-+.  ...+++.---.-...-
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR--~rAvLLtAkA~s~lda  243 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER--SRAVLLTAKAMSLLDA  243 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH--HHHHHHHHHHHHHhcC
Confidence            56778888888888888888888888777777788889999988886655432   211110  1122221111122234


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |...|.....++.++.|+...+-...+..++..|+..++-.+++.+.+..|--
T Consensus       244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence            67788888888899999988888889999999999999999999999888764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.76  E-value=0.00026  Score=53.89  Aligned_cols=91  Identities=20%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEA-LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      .|+...|+.++..++...|....+ +..+|++.+..|-.-.|-.++.+++.+..+      .+-..+.+|+.++...+.+
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHHHhcchhHHHHhhhH
Confidence            355555555555555555544332 344555555555555555555555555433      3444445555555555555


Q ss_pred             HHHHHHHHHHHhCCCCch
Q 031170           87 EALKSYQELEIEDPNDFR  104 (164)
Q Consensus        87 ~A~~~~~~~~~~~p~~~~  104 (164)
                      +|++.|+++++.+|+++.
T Consensus       694 ~a~~~~~~a~~~~~~~~~  711 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPE  711 (886)
T ss_pred             HHHHHHHHHHhcCCCChh
Confidence            555555555555555544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0023  Score=43.87  Aligned_cols=128  Identities=13%  Similarity=0.177  Sum_probs=81.0

Q ss_pred             hhcCCchHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            6 SEMGKTQDARNVFEEILAGN-----PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      -.+..+.++..+|+++...+     |+-...-...+-=..+.-++++|+++|++++.+....+......+.+-..++++.
T Consensus        82 ke~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen   82 KELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV  161 (308)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence            34566777777777777653     2222222233333456667888888888888877665444333455556788899


Q ss_pred             HccCHHHHHHHHHHHHHh------CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           81 LQKNVDEALKSYQELEIE------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      +.+.+.+|-..+.+-...      .+.-...+.....+|...+++..|..+++..-++.
T Consensus       162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            999999988877664322      22233344555566666778888888887765443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.75  E-value=0.0015  Score=48.92  Aligned_cols=102  Identities=11%  Similarity=0.096  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCchhhhhH
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE-DPNDFRPYFCK  109 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~  109 (164)
                      +...+|.|..+.|+.++|++.++..++..|...    ...++..+..++...+.|.++...+.+--+. -|++....+..
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~----~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa  336 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD----NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA  336 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence            345789999999999999999999999887533    4678889999999999999999888875433 25556555555


Q ss_pred             HHHHHh-cCC---------------HHHHHHHHHHHHhhCCCc
Q 031170          110 GMIYSL-LDR---------------NAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       110 ~~~~~~-~~~---------------~~~A~~~l~~~~~~~p~~  136 (164)
                      +.+-.+ -++               -..|++.+.++++.+|--
T Consensus       337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence            554333 111               234788999999999875

The molecular function of this protein is uncertain.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.00021  Score=53.28  Aligned_cols=144  Identities=14%  Similarity=0.082  Sum_probs=107.3

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-Hhhccccchh--hhhhhHHHHHHHHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEA-LEIAEDGNKL--KEARDVRFIMAQIKF   80 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~--~~~~~~~~~la~~~~   80 (164)
                      .+..+.+...+..-.+.+.....+.+.+....++.+...|++.+|.+.+... +...|.....  ...-.+|..+|-+++
T Consensus       215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~  294 (696)
T KOG2471|consen  215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY  294 (696)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence            3455666666777777777777788999999999999999999998877542 2222221100  011234568999999


Q ss_pred             HccCHHHHHHHHHHHHHh---------CC---------CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170           81 LQKNVDEALKSYQELEIE---------DP---------NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~---------~p---------~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      ..|.|.-+..+|.+++..         .|         ++.+++++.|..|...|+.-.|.++|.+++...-.+  .+-|
T Consensus       295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--PrlW  372 (696)
T KOG2471|consen  295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--PRLW  372 (696)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--cHHH
Confidence            999999999999999961         11         245678899999999999999999999999888777  6677


Q ss_pred             hhhhhhh
Q 031170          143 LRTPLSR  149 (164)
Q Consensus       143 ~~~~~~~  149 (164)
                      +++.-++
T Consensus       373 LRlAEcC  379 (696)
T KOG2471|consen  373 LRLAECC  379 (696)
T ss_pred             HHHHHHH
Confidence            7775443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=0.00088  Score=46.37  Aligned_cols=131  Identities=16%  Similarity=0.209  Sum_probs=95.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      |+++.++.||.+.|..+|++.-+.      -.+...+..+.+.++.-.+++.+|...+.+++..+|.      .+.+...
T Consensus       218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~------~~~a~Nn  291 (366)
T KOG2796|consen  218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR------NAVANNN  291 (366)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC------chhhhch
Confidence            467788999999999999955432      2234556778888999999999999999999999998      6777778


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCc---hhhhhHHHHHHh-cCCHHHHHHHHHHHH-hhCCCcc
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPNDF---RPYFCKGMIYSL-LDRNAEAKEEFAKYR-QLSPKKF  137 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~-~~~~~~A~~~l~~~~-~~~p~~~  137 (164)
                      .|.|..=.|+...|++..++++...|...   ...+++..+|.. -.+..+-...+..++ ...|+++
T Consensus       292 KALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~~~~d~f  359 (366)
T KOG2796|consen  292 KALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQKKQALLEAVAGKEGDSF  359 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhccCCCcc
Confidence            89999999999999999999999998753   233444433322 122233344445554 4456664

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.71  E-value=0.00065  Score=40.62  Aligned_cols=40  Identities=10%  Similarity=0.056  Sum_probs=30.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHH---HHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEA---LFENALLMD   40 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~   40 (164)
                      +|+.++..|++-+|+++.++++..++++...   +..-|.++.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~   44 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY   44 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH
Confidence            3677889999999999999999998887643   344455543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.70  E-value=0.0068  Score=42.80  Aligned_cols=130  Identities=17%  Similarity=0.092  Sum_probs=96.0

Q ss_pred             hhhcCCchHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccc---cchh-----hh
Q 031170            5 LSEMGKTQDARNVFEEILAGN-PLS-------FEALFENALLMDRCG-EGEAVIKRLEEALEIAED---GNKL-----KE   67 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~-p~~-------~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~---~~~~-----~~   67 (164)
                      -...|+++.|...+.++-... ..+       ...++..|......+ ++++|...++++.+....   ....     .-
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            356899999999999987755 333       335778888888999 999999999999998422   1111     11


Q ss_pred             hhhHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           68 ARDVRFIMAQIKFLQKNVD---EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      ...++..++.++...+.++   +|....+.+-...|+.+..++..-.+....++.+++.+.+.+.+...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            3456667899998877655   556666667777888888876666666668888888888888887654

It is also involved in sporulation [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.68  E-value=0.0012  Score=44.72  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=61.2

Q ss_pred             hcCCchHHHHHHHHHHhc----C-CCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc-------cccchhhhhhhHH
Q 031170            7 EMGKTQDARNVFEEILAG----N-PLS--FEALFENALLMDRCGEGEAVIKRLEEALEIA-------EDGNKLKEARDVR   72 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~----~-p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~   72 (164)
                      ....+++|++.|.-++-.    . +..  +..+..+|++|...|+.+....++++|++..       ...........+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            345677888877766542    1 222  4457788999999998665555555555443       2211111135667


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      +.+|.+..+.|++++|+.+|.+++..
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            78899999999999999999998876

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.68  E-value=0.0029  Score=45.81  Aligned_cols=135  Identities=25%  Similarity=0.238  Sum_probs=100.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc--------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNP----LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN--------------   63 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------   63 (164)
                      +++....|.++-|...+.++....+    ..+.+.+..+.++...|+..+|+..++..+.......              
T Consensus       153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF02259_consen  153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLL  232 (352)
T ss_pred             HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccc
Confidence            4567788999999999999988652    2567788889999999999999999998888211111              


Q ss_pred             --------------hhhhhhhHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC-----
Q 031170           64 --------------KLKEARDVRFIMAQIKFLQ------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR-----  118 (164)
Q Consensus        64 --------------~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----  118 (164)
                                    .......++..+|.-....      ++.+.++..|.+++..+|....+|+..|..+...-+     
T Consensus       233 ~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~  312 (352)
T PF02259_consen  233 ESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPRE  312 (352)
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhc
Confidence                          0111345556667766666      888999999999999999999999988887766211     


Q ss_pred             ------------HHHHHHHHHHHHhhCCCc
Q 031170          119 ------------NAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       119 ------------~~~A~~~l~~~~~~~p~~  136 (164)
                                  ...|+..|-+++...+..
T Consensus       313 ~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  313 KEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence                        134777777777777763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.65  E-value=0.0023  Score=46.71  Aligned_cols=126  Identities=17%  Similarity=0.120  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH---ccCHHHHHHHHHH-HHHhCCCCc
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL---QKNVDEALKSYQE-LEIEDPNDF  103 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-~~~~~p~~~  103 (164)
                      ++++...+-..|....+|+.-+.+.+..-.. |.-. ......+....|..+.+   .|+.++|+..+.. +....+.++
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            3455666777888889999888888776554 2211 11146677788888888   9999999999998 445566778


Q ss_pred             hhhhhHHHHHHh---------cCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcccc
Q 031170          104 RPYFCKGMIYSL---------LDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGT  155 (164)
Q Consensus       104 ~~~~~~~~~~~~---------~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  155 (164)
                      +.+...|.+|-.         ....++|+..|.++....|+.+.-.....+.......|..
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~  278 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFET  278 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccc
Confidence            888888888766         2347889999999999998775544444433333333433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.64  E-value=0.0022  Score=41.09  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG  110 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  110 (164)
                      ++..+..+-...++.+++...+.-.--+.|.      ...+...-|.+++..|+|.+|+..++.+....|..+..--.++
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            4566667778888999999999988889998      7888889999999999999999999999988888887777888


Q ss_pred             HHHHhcCCH
Q 031170          111 MIYSLLDRN  119 (164)
Q Consensus       111 ~~~~~~~~~  119 (164)
                      .|+...|+.
T Consensus        86 ~CL~~~~D~   94 (160)
T PF09613_consen   86 LCLYALGDP   94 (160)
T ss_pred             HHHHHcCCh
Confidence            888888774

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.62  E-value=0.00057  Score=52.13  Aligned_cols=106  Identities=20%  Similarity=0.136  Sum_probs=89.1

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYS  114 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  114 (164)
                      .|.....+|+...|+.++..|+...|...     .-..+.+|++.+.-|-.-.|-.++.+++.+....+-.++.+|.++.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~-----~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l  687 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQ-----DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL  687 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhh-----cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH
Confidence            34445678999999999999999888632     3345689999999998999999999999998777777889999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170          115 LLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus       115 ~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      .+.+.+.|++.|+.+++++|++.....-+..
T Consensus       688 ~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  688 ALKNISGALEAFRQALKLTTKCPECENSLKL  718 (886)
T ss_pred             HHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            9999999999999999999999666555443

>PRK10941 hypothetical protein; Provisional

Probab=97.62  E-value=0.00091  Score=46.83  Aligned_cols=76  Identities=13%  Similarity=-0.053  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      ..++-.++.+.++++.|+.+.+..+...|+      .+.-+...|.+|.+.|.+..|..-++.-+...|+++.+......
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            345566788888888888888888888887      56666778888888888888888888888888888776655544


Q ss_pred             HH
Q 031170          112 IY  113 (164)
Q Consensus       112 ~~  113 (164)
                      +.
T Consensus       258 l~  259 (269)
T PRK10941        258 IH  259 (269)
T ss_pred             HH
Confidence            43

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.61  E-value=0.0064  Score=43.89  Aligned_cols=111  Identities=15%  Similarity=0.096  Sum_probs=82.9

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170           16 NVFEEILAGNPLSFEALFENALLMDRCGE------------GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus        16 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      .-|++.++.+|++.++|..+....-..-.            .+.-+.+|++|++.+|+      +...+..+-.+.....
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~------~~~L~l~~l~~~~~~~   79 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD------SERLLLGYLEEGEKVW   79 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhC
Confidence            45788899999999999998876554433            34568889999999997      6677777767777888


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh---cCCHHHHHHHHHHHHhh
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL---LDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~l~~~~~~  132 (164)
                      +.++..+-+++++..+|+++..|...-.....   .-.+......|.+++..
T Consensus        80 ~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   80 DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            89999999999999999999888654432222   22455666666666544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.53  E-value=0.00095  Score=42.10  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=58.2

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      ..++.+++..++..+--+.|+.+++-..-|.+++..|+|++|+..|+......+.      .+...-.++.|+..+||.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~------~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA------PPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC------chHHHHHHHHHHHhcCChH
Confidence            3667888888888888888888888888888888888888888888888777665      4555567778887777643

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK10941 hypothetical protein; Provisional

Probab=97.47  E-value=0.0028  Score=44.42  Aligned_cols=69  Identities=22%  Similarity=0.273  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .+....+=.++...++++.|+.+.+.++...|+++.-+.-+|.+|.++|.+..|..-|+..+...|++.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp  249 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP  249 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence            344456677899999999999999999999999999999999999999999999999999999999983

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.46  E-value=0.0048  Score=47.81  Aligned_cols=117  Identities=12%  Similarity=0.060  Sum_probs=92.9

Q ss_pred             hcCCchHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            7 EMGKTQDARNVFEEILAG-----NPLSFEALFENALLMDRCG-----EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      ...|.+.|+.+|+.+...     .-..+.+.+.+|.+|.+-.     ++..|+.++.++.....        +.+.+.+|
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--------~~a~~~lg  332 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--------PDAQYLLG  332 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--------chHHHHHH
Confidence            346899999999998771     1125567888999998743     66789999999988753        57888888


Q ss_pred             HHHHHcc---CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 031170           77 QIKFLQK---NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        77 ~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~  133 (164)
                      .++..-.   ++..|..+|..+...  .+..+.+.++.+|..    .-+...|+.+++++-...
T Consensus       333 ~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  333 VLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            8888665   678999999998864  677888888888776    457889999999998877

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.46  E-value=0.0003  Score=49.63  Aligned_cols=57  Identities=25%  Similarity=0.204  Sum_probs=45.5

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      ....|+.++|..+|+.+++..|++++++..+|.+....++.-+|-.+|-+++.++|.
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~  182 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG  182 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence            345677888888888888888888888888888877777777888888888888887

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.40  E-value=0.013  Score=41.59  Aligned_cols=117  Identities=14%  Similarity=0.055  Sum_probs=89.7

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhh-hhHHHHHHHHHHHc
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEA-RDVRFIMAQIKFLQ   82 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~~~~~   82 (164)
                      ..+..+|..+|..+  ...+.+.+.+.+|.++..    ..+..+|..+|.++.+....      . ......+|.+|..-
T Consensus        90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~------~a~~~~~~l~~~~~~g  161 (292)
T COG0790          90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV------EAALAMYRLGLAYLSG  161 (292)
T ss_pred             cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHHHcC
Confidence            34678899999944  456788899999998887    55889999999999998654      2 23366777777654


Q ss_pred             c-------CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170           83 K-------NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        83 ~-------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p  134 (164)
                      .       +...|+.+|.++....  +..+.+.+|.+|..    ..+..+|+.+|.++-....
T Consensus       162 ~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         162 LQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             hhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            1       3347899998887764  77788888988766    4578999999999987765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.40  E-value=0.0034  Score=47.05  Aligned_cols=88  Identities=9%  Similarity=0.007  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC-HHHHHHHH
Q 031170           14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN-VDEALKSY   92 (164)
Q Consensus        14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~   92 (164)
                      -...|+.+....+.|+..|........+.+.+.+-...|.+++...|+      ++..|..-|.-.+..+. .+.|...+
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~------~~dLWI~aA~wefe~n~ni~saRalf  163 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN------NPDLWIYAAKWEFEINLNIESARALF  163 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CchhHHhhhhhHHhhccchHHHHHHH
Confidence            356788888888889899888887777777788888899999999998      78888877776666665 88888999


Q ss_pred             HHHHHhCCCCchhhh
Q 031170           93 QELEIEDPNDFRPYF  107 (164)
Q Consensus        93 ~~~~~~~p~~~~~~~  107 (164)
                      .+++..+|+++..|.
T Consensus       164 lrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  164 LRGLRFNPDSPKLWK  178 (568)
T ss_pred             HHHhhcCCCChHHHH
Confidence            999999998887653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.40  E-value=0.00042  Score=46.84  Aligned_cols=61  Identities=25%  Similarity=0.357  Sum_probs=57.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG   62 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~   62 (164)
                      +.+....++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|..
T Consensus         2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            5677889999999999999999999999999999999999999999999999999999874

>smart00028 TPR Tetratricopeptide repeats

Probab=97.39  E-value=0.00054  Score=30.62  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=11.7

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      ..+|.++...++++.|+.+++++++..
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            334444444444444444444444433

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=97.35  E-value=0.00036  Score=31.28  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      .++..+|.++...+++++|+..++++++..|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46788999999999999999999999988774

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.34  E-value=0.0077  Score=34.97  Aligned_cols=66  Identities=27%  Similarity=0.236  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--chhhhhHHHHHHhcCCH
Q 031170           48 VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND--FRPYFCKGMIYSLLDRN  119 (164)
Q Consensus        48 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~  119 (164)
                      .+..+++.+..+|+      +..+.+.+|..+...|++++|++.+..++..++.+  ..+.-.+-.++...|.-
T Consensus         7 ~~~al~~~~a~~P~------D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPD------DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            45567777777777      67777788888888888888888888888776665  33333333444444443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.31  E-value=0.0015  Score=33.87  Aligned_cols=28  Identities=14%  Similarity=0.184  Sum_probs=10.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      +|..+++.|+|++|..+.+.+++..|++
T Consensus         7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    7 LAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            3333344444444444444444444433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.31  E-value=0.0085  Score=39.42  Aligned_cols=94  Identities=14%  Similarity=0.175  Sum_probs=55.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..|...|+.++|++.|.++.......   .+.++.+..+.+..+++..+..++.++-......++..........-|..
T Consensus        43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~  122 (177)
T PF10602_consen   43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA  122 (177)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            455667777777777777766654332   33455666666777777777777777666544322222223344455666


Q ss_pred             HHHccCHHHHHHHHHHH
Q 031170           79 KFLQKNVDEALKSYQEL   95 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~   95 (164)
                      +...++|.+|...|-.+
T Consensus       123 ~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  123 NLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHhchHHHHHHHHHcc
Confidence            66677777776666443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.30  E-value=0.0052  Score=49.06  Aligned_cols=126  Identities=16%  Similarity=0.087  Sum_probs=85.5

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH----------Hhhccccchh----hhhh
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEA----------LEIAEDGNKL----KEAR   69 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------~~~~~~~~~~----~~~~   69 (164)
                      .|...|.+++|.++-+.--.++-  -..|+..|.-+...++.+.|+++|+++          +.-+|..-+.    ....
T Consensus       835 lyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~  912 (1416)
T KOG3617|consen  835 LYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE  912 (1416)
T ss_pred             HHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence            34555556665555443322221  234677777888888888999998873          2223332111    1135


Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------CCCCchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170           70 DVRFIMAQIKFLQKNVDEALKSYQELEIE---------------------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAK  128 (164)
Q Consensus        70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~  128 (164)
                      ..+.+.|......|+.+.|+.+|..+-..                     ...+..+-+.+|..|...|+..+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            66778899999999999999999886432                     234666788899999999999999998887


Q ss_pred             HHh
Q 031170          129 YRQ  131 (164)
Q Consensus       129 ~~~  131 (164)
                      +..
T Consensus       993 Aqa  995 (1416)
T KOG3617|consen  993 AQA  995 (1416)
T ss_pred             HHH
Confidence            643

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.30  E-value=0.0064  Score=36.44  Aligned_cols=95  Identities=7%  Similarity=0.013  Sum_probs=68.7

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCc
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-----------NVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~  103 (164)
                      ++.-++..|++-+|+.+.+..+...++....   ...+..-|.++..+.           -.-.++++|.++....|...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A   78 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA   78 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence            4667889999999999999999988763321   244556677765443           23467889999999999887


Q ss_pred             hhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170          104 RPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ..++.+|.-+--...+++++.-.++++..
T Consensus        79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   79 HSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            77777776554455567777777777655

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.30  E-value=0.0063  Score=47.14  Aligned_cols=129  Identities=11%  Similarity=0.118  Sum_probs=98.3

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH---HHHHHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF---IMAQIKF   80 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~la~~~~   80 (164)
                      .....|=++....+|++++.+.--.|+...+.|..+.+..-++++.+.|++.+.+++...    ...+|.   .....-+
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~----v~diW~tYLtkfi~ry  561 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN----VYDIWNTYLTKFIKRY  561 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc----HHHHHHHHHHHHHHHh
Confidence            345667888899999999999888999999999999999999999999999999987633    233343   2233334


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCc--hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDF--RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .--..+.|...|+++++..|...  ..++..+..-..-|-...|++.|+++....+..
T Consensus       562 gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a  619 (835)
T KOG2047|consen  562 GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA  619 (835)
T ss_pred             cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH
Confidence            44578999999999999887432  234555666666788889999999987665544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.30  E-value=0.0011  Score=46.87  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      .+.-....|+.++|..+|+.++.+.|.      ++.++..+|......++.-+|-.||-+++..+|.+.+++.++..
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            344456789999999999999999999      88999999999998999999999999999999998887766544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.021  Score=39.65  Aligned_cols=123  Identities=11%  Similarity=0.114  Sum_probs=83.4

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      +......+.|+++.+.+|..+|.+-.+|.-.=.++..++ +..+-+.++...+.-+|.      +..+|...-.+....|
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK------NYQvWHHRr~ive~l~  126 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK------NYQVWHHRRVIVELLG  126 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc------chhHHHHHHHHHHHhc
Confidence            344556677888888888888888777765555554444 446677888888888887      5666666666666666


Q ss_pred             CHH-HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           84 NVD-EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        84 ~~~-~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ++. .-+.+...++..+.++..+|-.+-++....+.++.-+.+..+.+..+
T Consensus       127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D  177 (318)
T KOG0530|consen  127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED  177 (318)
T ss_pred             CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            666 66677777777777777777666666666666666666666555544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.27  E-value=0.0027  Score=37.15  Aligned_cols=58  Identities=26%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc
Q 031170            6 SEMGKTQDARNVFEEILAGNPLS---------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN   63 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   63 (164)
                      ...|+|.+|++.+.+..+.....         ..+...+|.++...|++++|+..+++++++....+
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            56788888877777776653221         24566777888888888888888888888766543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.0071  Score=45.45  Aligned_cols=84  Identities=11%  Similarity=0.062  Sum_probs=68.9

Q ss_pred             HHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC-HHHHHHHHH
Q 031170           49 IKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR-NAEAKEEFA  127 (164)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~l~  127 (164)
                      ...|+.+....+.      +...|........+.+.+.+--+.|.+++..+|++++.|..-+.-.+..+. .+.|...+.
T Consensus        91 v~lyr~at~rf~~------D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   91 VFLYRRATNRFNG------DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHhcCC------CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            4567788887776      466777655555566669999999999999999999999999987777555 899999999


Q ss_pred             HHHhhCCCcch
Q 031170          128 KYRQLSPKKFE  138 (164)
Q Consensus       128 ~~~~~~p~~~~  138 (164)
                      ++++.+|+...
T Consensus       165 rgLR~npdsp~  175 (568)
T KOG2396|consen  165 RGLRFNPDSPK  175 (568)
T ss_pred             HHhhcCCCChH
Confidence            99999999843

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.22  E-value=0.0036  Score=42.46  Aligned_cols=96  Identities=18%  Similarity=0.084  Sum_probs=67.3

Q ss_pred             HcCCcHHHHHHHHHHHhhccccc-hhhhhhhHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCCC------Cchhh
Q 031170           41 RCGEGEAVIKRLEEALEIAEDGN-KLKEARDVRFIMAQIKFLQKNVD-------EALKSYQELEIEDPN------DFRPY  106 (164)
Q Consensus        41 ~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~-------~A~~~~~~~~~~~p~------~~~~~  106 (164)
                      ....+++|+..|.-|+-...-.+ .....+..++.+|++|-.+|+-+       .|+..|.++......      .....
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            44567888888877776543222 11124667778999999999855       455555555544322      23567


Q ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          107 FCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       107 ~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +.+|.+..+.|++++|+.+|.+++......
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            889999999999999999999998776444

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.22  E-value=0.0044  Score=36.28  Aligned_cols=62  Identities=16%  Similarity=0.130  Sum_probs=44.7

Q ss_pred             HHHHcCCcHHHHHHHHHHHhhccccchhh---hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           38 LMDRCGEGEAVIKRLEEALEIAEDGNKLK---EARDVRFIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      .....|+|.+|++.+.+..+.........   ....+.+.+|.++...|++++|+..+++++...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            44678899999888888888765543322   224456677888888888888888888887763

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.20  E-value=0.033  Score=40.28  Aligned_cols=117  Identities=13%  Similarity=0.092  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH-H--HHccCHHH
Q 031170           11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI-K--FLQKNVDE   87 (164)
Q Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~   87 (164)
                      .+.-+.+|+++++.+|++...+..+-.+..+..+.++...-+++++...|+      ....|...-.. .  +..-.+..
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~------~~~LW~~yL~~~q~~~~~f~v~~  120 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG------SPELWREYLDFRQSNFASFTVSD  120 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHHhccCcHHH
Confidence            456788999999999999999998888888888888889999999999987      45555532211 1  12235667


Q ss_pred             HHHHHHHHHHhCCC---C---------------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           88 ALKSYQELEIEDPN---D---------------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        88 A~~~~~~~~~~~p~---~---------------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ....|.+++..-..   .               ...++.++....+.|..+.|+..++..+..+
T Consensus       121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            77777777653211   0               1123455666677999999999999999885

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.20  E-value=0.0032  Score=32.60  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      +.++.+|..+.+.|+|++|..+.+.+++..|+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~   33 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD   33 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            34677788888888888888888888888888

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.19  E-value=0.024  Score=42.33  Aligned_cols=128  Identities=16%  Similarity=0.131  Sum_probs=85.4

Q ss_pred             hhhhhcCC-chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHhhcc---ccch---hhhhhhHHH
Q 031170            3 RLLSEMGK-TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIK--RLEEALEIAE---DGNK---LKEARDVRF   73 (164)
Q Consensus         3 ~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~a~~~~~---~~~~---~~~~~~~~~   73 (164)
                      .-+.+.|. -++|++.++.+++..|.+..... .. ..+-...|.+|+.  .+.+.+++..   +.+-   .........
T Consensus       387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v-~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian  464 (549)
T PF07079_consen  387 KHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IV-FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN  464 (549)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence            34556665 78999999999999888875433 22 2233334555543  2444444321   0000   000122222


Q ss_pred             --HHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           74 --IMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        74 --~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                        .=|...+.+|+|.++..+-.=+.+..| ++.++..+|.++....++.+|..++...   .|++
T Consensus       465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~  525 (549)
T PF07079_consen  465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNE  525 (549)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCch
Confidence              335667899999999988888888889 8999999999999999999999998765   5544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.17  E-value=0.012  Score=35.84  Aligned_cols=93  Identities=13%  Similarity=0.031  Sum_probs=52.0

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh----
Q 031170            5 LSEMGKTQDARNVFEEILAGNPL------------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA----   68 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----   68 (164)
                      ....|-|++|...++++....-.            +...+-.++..+...|+|++++....+++..+...+.+...    
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl   98 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL   98 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence            34557778888888777764321            12334566677778888888877777777765443332211    


Q ss_pred             -hhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           69 -RDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        69 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                       ..+.+..|..+...|..++|+..|+.+.+
T Consensus        99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence             12222445555666666666666666543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.17  E-value=0.013  Score=37.09  Aligned_cols=82  Identities=12%  Similarity=0.048  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      +......-...++.+++...+.-.--+.|+      ...+...-|.++...|+|.+|+..++.+....+..+..--.++.
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~   86 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL   86 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence            344445556688999999999888888998      67888889999999999999999999998887777766667888


Q ss_pred             HHHhcCCH
Q 031170          112 IYSLLDRN  119 (164)
Q Consensus       112 ~~~~~~~~  119 (164)
                      |+..+|+.
T Consensus        87 CL~al~Dp   94 (153)
T TIGR02561        87 CLNAKGDA   94 (153)
T ss_pred             HHHhcCCh
Confidence            88887764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.17  E-value=0.023  Score=35.44  Aligned_cols=71  Identities=20%  Similarity=0.280  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHcCCc---HHHHHHHHHHHh-hccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           30 EALFENALLMDRCGEG---EAVIKRLEEALE-IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~---~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      +..+.+++++....+.   .+.+.+++..++ -.|. .    .....+.+|..+++.++|++++.+....++..|++..+
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~-~----rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE-R----RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc-c----chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            3445555555544433   234555555554 2222 1    23444455555555555555555555555555555443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.0089  Score=46.32  Aligned_cols=102  Identities=15%  Similarity=0.052  Sum_probs=77.2

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY  113 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  113 (164)
                      +-|.-+++..+|..+++.|...++-.|.+............++-||....+.++|.++++.+-+.+|.++-..+......
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~  438 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF  438 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            34556677888888888888888877765544445666667888888888888888888888888888877766777777


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCC
Q 031170          114 SLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus       114 ~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ..-|+.++|+..+.+......+
T Consensus       439 ~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  439 LAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             HHhcchHHHHHHHHHHHhhhcc
Confidence            7778888888887777665433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.15  E-value=0.00098  Score=45.13  Aligned_cols=60  Identities=25%  Similarity=0.358  Sum_probs=37.6

Q ss_pred             HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170           38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      ...+.++.+.|.+.+.+++...|.      -...|+.+|....+.|+++.|.+.|+++++.+|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            344556666666666666666666      555666666666666666666666666666666554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.14  E-value=0.036  Score=40.80  Aligned_cols=119  Identities=18%  Similarity=0.087  Sum_probs=77.2

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA   88 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   88 (164)
                      .+...|.+.-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|.       +.++.  ..++.+.||....
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-------P~ia~--lY~~ar~gdta~d  313 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-------PDIAL--LYVRARSGDTALD  313 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-------hHHHH--HHHHhcCCCcHHH
Confidence            35667888888888888888888888888888888888888888888888876       32222  1223334443332


Q ss_pred             -HHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           89 -LKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        89 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                       ++-..+...+.|++.+..+..+..-...|++..|..--+.+....|..
T Consensus       314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre  362 (531)
T COG3898         314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE  362 (531)
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh
Confidence             233333444556666666666666666666666666666666665554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.10  E-value=0.014  Score=47.77  Aligned_cols=127  Identities=13%  Similarity=-0.051  Sum_probs=90.7

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---CcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSF---EALFENALLMDRC----G---EGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      ++...+.|+.|+..|++.-...|+..   ++.+.+|....++    |   .+++|+..|++.-.. |.      -+--++
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~  556 (932)
T PRK13184        484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VG------APLEYL  556 (932)
T ss_pred             HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CC------CchHHH
Confidence            45667889999999999999998764   4667777665533    2   356666666665432 22      244456


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh-----cCCHHHHHHHHHHHHhhCCCcc
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL-----LDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      ..|.+|..+|++++-+++|.-+++..|+++..-...-.+..+     -.+...|....--++...|...
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI  625 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            778899999999999999999999999998765444333333     2334567777777888888873

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.08  E-value=0.039  Score=41.30  Aligned_cols=125  Identities=15%  Similarity=0.075  Sum_probs=88.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEA-----LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      |-++..++++.+|...|.++.+...+.+..     +.++..-.+-+++.+.-...+-..-+..|.      +.-..+..|
T Consensus        13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~------s~~l~LF~~   86 (549)
T PF07079_consen   13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGK------SAYLPLFKA   86 (549)
T ss_pred             hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC------chHHHHHHH
Confidence            456788999999999999999887666443     333333334455666666666666666666      566777889


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCchhh---------------hhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPNDFRPY---------------FCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---------------~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ...++++++.+|+..+...-..-......|               ...+.++...|++.+++..+++.+..
T Consensus        87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            999999999999998876554422222111               13466777899999999999988754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.08  E-value=0.028  Score=40.73  Aligned_cols=115  Identities=15%  Similarity=0.173  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C---
Q 031170           27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN-D---  102 (164)
Q Consensus        27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~---  102 (164)
                      .....|..++.+..+.|+++-|...+.++....+.....  .+.+.+..+.+....|+..+|+..++..+..... .   
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            445678899999999999999999999998876432221  3667788899999999999999999888872111 0   


Q ss_pred             ------------------------------chhhhhHHHHHHhc------CCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170          103 ------------------------------FRPYFCKGMIYSLL------DRNAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus       103 ------------------------------~~~~~~~~~~~~~~------~~~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                                                    ..+++.+|......      +..++++..|..++...|...  +.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--k~~~~~  298 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE--KAWHSW  298 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH--HHHHHH
Confidence                                          12344555555556      888899999999999999883  344444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.07  E-value=0.057  Score=38.26  Aligned_cols=118  Identities=13%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             cCCchHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            8 MGKTQDARNVFEEILAGNPLS-FEALFENALLMDRCG-------EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      ..+..+|..+|+++....-.. ..+.+.++.++..-.       +...|...+.++....        ...+...+|.+|
T Consensus       126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y  197 (292)
T COG0790         126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMY  197 (292)
T ss_pred             ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHH
Confidence            348999999999998864322 234888888877641       2237888888888876        257778888888


Q ss_pred             HH----ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC---------------CHHHHHHHHHHHHhhCCCc
Q 031170           80 FL----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD---------------RNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        80 ~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---------------~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..    ..++.+|..+|.++.....  ....+.++ ++...|               +...|...+..+....+..
T Consensus       198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         198 EKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             HcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence            54    4589999999999998755  77788888 666555               7777888888876666554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.05  E-value=0.0055  Score=46.47  Aligned_cols=91  Identities=15%  Similarity=0.080  Sum_probs=76.5

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG---EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      .+....|+..|.+++...|.....+.+.+.++.+.+-.   -.|+.-...+++++|.      ...+++.|+.++...+.
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s------~~kah~~la~aL~el~r  460 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS------IQKAHFRLARALNELTR  460 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH------HHHHHHHHHHHHHHHhh
Confidence            44677899999999999999999999888888876533   3567777888999988      78899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCch
Q 031170           85 VDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~  104 (164)
                      +.+|+.+...+...+|.+..
T Consensus       461 ~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  461 YLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHhhhhHHHHhhcCchhhh
Confidence            99999999888888886554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.01  E-value=0.019  Score=35.00  Aligned_cols=102  Identities=16%  Similarity=0.035  Sum_probs=69.8

Q ss_pred             HHHHHH--HHHHHcCCcHHHHHHHHHHHhhccccchh----h--hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 031170           31 ALFENA--LLMDRCGEGEAVIKRLEEALEIAEDGNKL----K--EARDVRFIMAQIKFLQKNVDEALKSYQELEIE----   98 (164)
Q Consensus        31 ~~~~la--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----   98 (164)
                      +|..++  .-.++-|.|++|...+.++.+....-..-    +  -+.-.+..|+..+..+|+|++++.-...++.-    
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            444444  34567789999999999999876432211    1  12344557888899999999888777777654    


Q ss_pred             ---CCC----CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           99 ---DPN----DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        99 ---~p~----~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                         +.+    ...+.+..+..+...|+.++|+..|+.+-.+
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               222    2344567888888899999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.01  E-value=0.018  Score=35.87  Aligned_cols=73  Identities=11%  Similarity=0.101  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHHc---cCHHHHHHHHHHHHH-hCCCC-chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170           69 RDVRFIMAQIKFLQ---KNVDEALKSYQELEI-EDPND-FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEG  141 (164)
Q Consensus        69 ~~~~~~la~~~~~~---~~~~~A~~~~~~~~~-~~p~~-~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~  141 (164)
                      ....+.+|+++...   .|..+.+.+++.+++ ..|.. .+-++.++.-+.+.+++++++.+++..++..|++.+...
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            56667777777654   467789999999997 55543 456788999999999999999999999999999955433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.00  E-value=0.043  Score=40.33  Aligned_cols=132  Identities=16%  Similarity=0.143  Sum_probs=98.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc--------------CC------------CC---HHHHHHHHHHHHHcCCcHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG--------------NP------------LS---FEALFENALLMDRCGEGEAVIKR   51 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~--------------~p------------~~---~~~~~~la~~~~~~~~~~~A~~~   51 (164)
                      ++.++..+|+++.|.+..++++=.              ++            .|   ..+++.....+.+.|-+..|.++
T Consensus        46 ls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~  125 (360)
T PF04910_consen   46 LSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEW  125 (360)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            356788899999999999988532              11            12   22355666788999999999999


Q ss_pred             HHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CchhhhhHHHHHHhcCCH-------
Q 031170           52 LEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN-----DFRPYFCKGMIYSLLDRN-------  119 (164)
Q Consensus        52 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~~-------  119 (164)
                      .+-.+.++|..+    ...+.+.+=....+.++|+=-+..++........     -+..-+..+.++...++.       
T Consensus       126 ~KlLlsLdp~~D----P~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~  201 (360)
T PF04910_consen  126 CKLLLSLDPDED----PLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSA  201 (360)
T ss_pred             HHHHHhcCCCCC----cchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccccc
Confidence            999999999843    3455556666667788888778877775552111     234556778888888887       


Q ss_pred             --------HHHHHHHHHHHhhCCCc
Q 031170          120 --------AEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       120 --------~~A~~~l~~~~~~~p~~  136 (164)
                              +.|...+.+|+...|.-
T Consensus       202 ~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  202 QSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             ccccccchhHHHHHHHHHHHHhHHH
Confidence                    89999999999999875

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.0083  Score=46.49  Aligned_cols=91  Identities=15%  Similarity=0.111  Sum_probs=77.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      |.-+++..+|..+++.|...+...|.+      ......++.||....+.|.|.+++++|-+.+|.      .+-....+
T Consensus       361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~------~~l~q~~~  434 (872)
T KOG4814|consen  361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ------SPLCQLLM  434 (872)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc------cHHHHHHH
Confidence            345678889999999999999988875      335667889999999999999999999999988      56667778


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHh
Q 031170           76 AQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ..+....+..++|+.+.......
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            88888999999999998776544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.95  E-value=0.028  Score=42.85  Aligned_cols=81  Identities=9%  Similarity=0.096  Sum_probs=69.9

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           19 EEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        19 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ++-|+.+|.|.+.|+.+..-+..+ .++++...+++.+...|.      .+++|.......+..++|+.-.+.|.+++..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~------s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS------SPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            678899999999999998766555 899999999999999999      8999999999999999999999999999876


Q ss_pred             CCCCchhhh
Q 031170           99 DPNDFRPYF  107 (164)
Q Consensus        99 ~p~~~~~~~  107 (164)
                       .-+.+.|-
T Consensus        83 -vLnlDLW~   90 (656)
T KOG1914|consen   83 -VLNLDLWK   90 (656)
T ss_pred             -HhhHhHHH
Confidence             33355553

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.013  Score=41.20  Aligned_cols=120  Identities=14%  Similarity=0.129  Sum_probs=80.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENA--LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      +|+++...|+++.|...+..+=...... ...-..+  .++.+.....+. ..+++.+..+|+      +..+.+.+|..
T Consensus       174 la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPd------d~~aa~~lA~~  245 (304)
T COG3118         174 LAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAATPEI-QDLQRRLAADPD------DVEAALALADQ  245 (304)
T ss_pred             HHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCC------CHHHHHHHHHH
Confidence            4778999999999998887653332222 2222122  333444433333 345667788898      78899999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170           79 KFLQKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAK  128 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~  128 (164)
                      +...|+.+.|.+.+-..++.+-.  +..+.-.+-.++...|..+.....+++
T Consensus       246 ~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR  297 (304)
T COG3118         246 LHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR  297 (304)
T ss_pred             HHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            99999999999999999988654  455555666666666655554444443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.89  E-value=0.067  Score=41.18  Aligned_cols=114  Identities=19%  Similarity=0.100  Sum_probs=100.1

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+..-..     .+..++.-+..-...|++
T Consensus       308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~-----~~~i~L~~a~f~e~~~n~  382 (577)
T KOG1258|consen  308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK-----TPIIHLLEARFEESNGNF  382 (577)
T ss_pred             hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC-----CcHHHHHHHHHHHhhccH
Confidence            567999999999999999999999999999999999999999999999999876542     366777778888889999


Q ss_pred             HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHH
Q 031170           86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE  124 (164)
Q Consensus        86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~  124 (164)
                      ..|...++.+....|+...+-+....+....|+.+.+..
T Consensus       383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            999999999999889998888888888888899888874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.86  E-value=0.0039  Score=30.12  Aligned_cols=31  Identities=42%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhcc
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAE   60 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~   60 (164)
                      .++..+|.++..+|++++|+.++++++.+..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            3566777777777777777777777776643

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.80  E-value=0.0098  Score=43.95  Aligned_cols=95  Identities=19%  Similarity=0.176  Sum_probs=74.1

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhhccccch-----------hhh-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170           36 ALLMDRCGEGEAVIKRLEEALEIAEDGNK-----------LKE-ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      |..++++++|..|..-|..++++..+...           ... ...+...+..||+..++.+-|+....+.|..+|..+
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            34567788888888888888777643211           100 123444789999999999999999999999999999


Q ss_pred             hhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170          104 RPYFCKGMIYSLLDRNAEAKEEFAKYR  130 (164)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~A~~~l~~~~  130 (164)
                      ..++..+.+...+.+|.+|-+...-+.
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999877666553

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.79  E-value=0.1  Score=41.19  Aligned_cols=129  Identities=16%  Similarity=0.106  Sum_probs=85.9

Q ss_pred             chhhh-hcCCchHHHHHHHHHHhcC--CCCHH----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            2 ARLLS-EMGKTQDARNVFEEILAGN--PLSFE----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         2 a~~~~-~~~~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      |.+++ .+.+++.|..++++++...  ++..+    +.+.++.++.+.+... |...+++.++.....+...-.....+.
T Consensus        66 a~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll  144 (608)
T PF10345_consen   66 ASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLL  144 (608)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHH
Confidence            44444 7899999999999998876  44333    3456788999888777 999999999976552221001111122


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC--CCCchh----hhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIED--PNDFRP----YFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~----~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      ........+|+..|+..++......  +.++..    .+..+.++...+..+.+++.++++..
T Consensus       145 ~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~  207 (608)
T PF10345_consen  145 KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA  207 (608)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence            2334444489999999999987764  233332    23446666667878888888887743

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.077  Score=40.13  Aligned_cols=126  Identities=13%  Similarity=0.040  Sum_probs=84.6

Q ss_pred             chhhhhcC--CchHHHHHHHHHHhcCCCC-HH--HHHHHHH-HHHHcCCcHHHHHHHHHHHhhccccchh-hhhhhHHHH
Q 031170            2 ARLLSEMG--KTQDARNVFEEILAGNPLS-FE--ALFENAL-LMDRCGEGEAVIKRLEEALEIAEDGNKL-KEARDVRFI   74 (164)
Q Consensus         2 a~~~~~~~--~~~~A~~~~~~~l~~~p~~-~~--~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~   74 (164)
                      |..+...|  +...++.+++......|.+ .+  ....+|. ++.-..+.+.|...++++..+...-+.- .....+.-.
T Consensus        14 Ae~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl   93 (629)
T KOG2300|consen   14 AEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL   93 (629)
T ss_pred             HHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence            34445555  6678888888888877654 22  3445564 5556778888999999988875432211 112344556


Q ss_pred             HHHHHHHcc-CHHHHHHHHHHHHHhCCCCc----hhhhhHHHHHHhcCCHHHHHHHHH
Q 031170           75 MAQIKFLQK-NVDEALKSYQELEIEDPNDF----RPYFCKGMIYSLLDRNAEAKEEFA  127 (164)
Q Consensus        75 la~~~~~~~-~~~~A~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~l~  127 (164)
                      ++.+|.... .+..+...+.++++.....+    ...+.++.++.-..++..|.+.+.
T Consensus        94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen   94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            788888777 78888888888888755543    334677777777888888887743

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.63  E-value=0.17  Score=37.26  Aligned_cols=112  Identities=17%  Similarity=0.016  Sum_probs=80.8

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcc--------------ccchh------hh---hhhHHHHHH
Q 031170           20 EILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE--------------DGNKL------KE---ARDVRFIMA   76 (164)
Q Consensus        20 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~------~~---~~~~~~~la   76 (164)
                      ..+..+|...+.+..++.++..+|++..|.+++++|+-...              ..+..      ..   ...+.+...
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            34567899999999999999999999999999999865432              11100      01   223344556


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCC-Cchh-hhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPN-DFRP-YFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~-~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      ....+.|-+..|.++.+-.+..+|. |+-. ++.+-....+.++++--+..++....
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            7788999999999999999999998 6544 34444445557777777777776544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.05  Score=41.08  Aligned_cols=127  Identities=12%  Similarity=0.011  Sum_probs=81.2

Q ss_pred             hhhhcCCchHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAG---NPL-------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~---~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      +-...|++.+|++....+..-   .|.       .+..++.+|....-.+.++.|...|..+.+.-....-   -.....
T Consensus       332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl---~a~~nl  408 (629)
T KOG2300|consen  332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL---QAFCNL  408 (629)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH---HHHHHH
Confidence            345678888888877776553   344       3556777887777888888888888888886543110   133444


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCC-------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPND-------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      .+|.+|...++-+.--+..+.+-..+...       ..+++..|...+..+++.||...+.+.++..
T Consensus       409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            67888888776654444443322221111       1235556666667888888888888888776

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.62  E-value=0.013  Score=46.90  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=21.9

Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQEL   95 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~   95 (164)
                      +..+.+.+|+.|...|++.+|+.+|.++
T Consensus       966 d~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  966 DKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3567778888888888888888888664

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.072  Score=37.15  Aligned_cols=113  Identities=12%  Similarity=0.133  Sum_probs=86.4

Q ss_pred             HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170           39 MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD  117 (164)
Q Consensus        39 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  117 (164)
                      +.+.++-.-|+.+.+.++.++|.      +..+|...-.+.-. ..+..+-++++..++..+|++...|..+-.+....|
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpA------nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~  126 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPA------NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG  126 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcc------cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence            34445556788888899999998      56666655444443 346778899999999999999999999999889999


Q ss_pred             CHH-HHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccch
Q 031170          118 RNA-EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND  157 (164)
Q Consensus       118 ~~~-~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  157 (164)
                      +.. .-++....++..+.+++-...+-.=++..++.|....
T Consensus       127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL  167 (318)
T KOG0530|consen  127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL  167 (318)
T ss_pred             CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence            988 8899999999999999666655554555556555433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.60  E-value=0.031  Score=38.84  Aligned_cols=87  Identities=16%  Similarity=0.017  Sum_probs=63.5

Q ss_pred             CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C----chhhhhHHHHHHhcC
Q 031170           44 EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN--D----FRPYFCKGMIYSLLD  117 (164)
Q Consensus        44 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~~~~~~~~~~  117 (164)
                      .....++++.+|+......+..+....+...+|.-|+..|+|++|+++|+.+......  .    ...+..+..|....|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            3446788899999887765544444566668999999999999999999999765332  1    233455667778889


Q ss_pred             CHHHHHHHHHHHH
Q 031170          118 RNAEAKEEFAKYR  130 (164)
Q Consensus       118 ~~~~A~~~l~~~~  130 (164)
                      +.+..+.+.-+.+
T Consensus       233 ~~~~~l~~~leLl  245 (247)
T PF11817_consen  233 DVEDYLTTSLELL  245 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            8888877765543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.60  E-value=0.26  Score=38.96  Aligned_cols=121  Identities=18%  Similarity=0.124  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHhcCCCC----HHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170           12 QDARNVFEEILAGNPLS----FEALFENALLMD-RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p~~----~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      ..|+.+++-+++..+=.    ..+.+.+|.+++ ++.+++.|..++++++.+.....-..........++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            34677777777432222    345778888776 8999999999999999987653322223455567899999888877


Q ss_pred             HHHHHHHHHHHhCCCCch-hh---hhH--HHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           87 EALKSYQELEIEDPNDFR-PY---FCK--GMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        87 ~A~~~~~~~~~~~p~~~~-~~---~~~--~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                       |....++.+........ .|   +.+  .......+++..|++.++......
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence             99999999887555221 11   111  223323479999999999998776

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.12  Score=39.92  Aligned_cols=118  Identities=20%  Similarity=0.088  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHH
Q 031170           13 DARNVFEEILAGNPLSFEALFE--NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALK   90 (164)
Q Consensus        13 ~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~   90 (164)
                      -++..+...+..+|.++..+..  +...+...+....+.-.+..++..+|.      ...+...+|......|....+..
T Consensus        49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~L~~ale~~~~~~~~~~  122 (620)
T COG3914          49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE------NCPAVQNLAAALELDGLQFLALA  122 (620)
T ss_pred             HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc------cchHHHHHHHHHHHhhhHHHHHH
Confidence            3666666677778888777543  466777788887888888888988888      66677777766666666666655


Q ss_pred             HHHH-HHHhCCCCchhhhhH------HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           91 SYQE-LEIEDPNDFRPYFCK------GMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        91 ~~~~-~~~~~p~~~~~~~~~------~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+.+ +....|++......+      +.....+|+..++...+.++....|.+
T Consensus       123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         123 DISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY  175 (620)
T ss_pred             HHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence            5544 777778777665544      777777888899999999998888887

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=96.46  E-value=0.062  Score=35.90  Aligned_cols=73  Identities=10%  Similarity=0.109  Sum_probs=48.6

Q ss_pred             cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CchhhhhHHHHHHhcCCHH
Q 031170           45 GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN----DFRPYFCKGMIYSLLDRNA  120 (164)
Q Consensus        45 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~~~~  120 (164)
                      .++|...|-++-....- .    .+...+.+|..|. ..|.++|+..+.+++...+.    +++.+..++.++...|+++
T Consensus       122 d~~A~~~fL~~E~~~~l-~----t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPEL-E----TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             cHHHHHHHHHHcCCCCC-C----CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            46676666665333221 1    3666677776555 66888888888888877544    3566777888888888887


Q ss_pred             HHH
Q 031170          121 EAK  123 (164)
Q Consensus       121 ~A~  123 (164)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.42  E-value=0.012  Score=28.33  Aligned_cols=29  Identities=21%  Similarity=-0.002  Sum_probs=20.5

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           70 DVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ..+..+|.+|...|++++|+.++++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34556777888888888888888777764

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.37  E-value=0.0076  Score=42.84  Aligned_cols=83  Identities=10%  Similarity=-0.100  Sum_probs=62.2

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH-HHHHHHHccCHHHHHHHHHHHHH
Q 031170           19 EEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI-MAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        19 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      .++-...|+++..|...+..-.+.+.|.+--..+.++++..|.      +...|.. .+.-++..++++.+...|.+++.
T Consensus        97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~------nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR  170 (435)
T COG5191          97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL------NVDLWIYCCAFELFEIANIESSRAMFLKGLR  170 (435)
T ss_pred             ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence            3444456778888887777777777888888888888888887      5666664 45556677888888888888888


Q ss_pred             hCCCCchhhh
Q 031170           98 EDPNDFRPYF  107 (164)
Q Consensus        98 ~~p~~~~~~~  107 (164)
                      .+|..+..|.
T Consensus       171 ~N~~~p~iw~  180 (435)
T COG5191         171 MNSRSPRIWI  180 (435)
T ss_pred             cCCCCchHHH
Confidence            8888887764

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.024  Score=39.50  Aligned_cols=71  Identities=13%  Similarity=-0.051  Sum_probs=54.3

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      +=..+...++++.|....++.+..+|.      .+.-+.-.|.+|.+.|.+.-|++.++..+...|+++.+-.....
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~------dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPE------DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCC------ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            345677888888888888888888887      56666677888888888888888888888888887765544443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.29  E-value=0.16  Score=33.29  Aligned_cols=125  Identities=18%  Similarity=0.113  Sum_probs=92.1

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLS--FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      +.+.+..++|+.-|..+-+..-..  .-+.+..+.+..+.|+-..|+..|..+-.-.|.....  ...+.+.-+.++...
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~--rd~ARlraa~lLvD~  145 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG--RDLARLRAAYLLVDN  145 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh--hHHHHHHHHHHHhcc
Confidence            446678899999998887765444  3356778899999999999999999877655431110  123445567778889


Q ss_pred             cCHHHHHHHHHHHH-HhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           83 KNVDEALKSYQELE-IEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        83 ~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      |.|+.-..-.+... ..+|-...+.-.+|..-.+.|++..|...|.....
T Consensus       146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            99998877665543 23455566677889999999999999999998875

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.23  E-value=0.18  Score=33.15  Aligned_cols=106  Identities=21%  Similarity=0.176  Sum_probs=77.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHh-hccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-----ALFENALLMDRCGEGEAVIKRLEEALE-IAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~l   75 (164)
                      |.+..+.|+...|+..|.++-...| .|.     +...-+.++...|.|+......+.+-. .+|-      ...+.-.|
T Consensus       101 at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~m------R~sArEAL  173 (221)
T COG4649         101 ATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPM------RHSAREAL  173 (221)
T ss_pred             HHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChh------HHHHHHHH
Confidence            4467788999999999998866544 223     345667788999999998777665422 1222      34566688


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           76 AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      |...++.|++..|.++|.++.. +...++...+++.+...
T Consensus       174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld  212 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence            9999999999999999998776 56666666677776554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.22  E-value=0.043  Score=38.67  Aligned_cols=79  Identities=20%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHH
Q 031170           11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALK   90 (164)
Q Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~   90 (164)
                      |..-....++.++.  ....++..++..+...|+++.++..+++.+..+|.      +...+..+-..|...|+...|+.
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~------~E~~~~~lm~~y~~~g~~~~ai~  208 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPY------DEPAYLRLMEAYLVNGRQSAAIR  208 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHcCCchHHHH
Confidence            44444444444442  24556677777777777777777777777777777      56777777777777777777777


Q ss_pred             HHHHHHH
Q 031170           91 SYQELEI   97 (164)
Q Consensus        91 ~~~~~~~   97 (164)
                      .|++.-+
T Consensus       209 ~y~~l~~  215 (280)
T COG3629         209 AYRQLKK  215 (280)
T ss_pred             HHHHHHH
Confidence            7776654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.19  E-value=0.37  Score=37.68  Aligned_cols=106  Identities=12%  Similarity=0.098  Sum_probs=77.4

Q ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH----c
Q 031170           10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL----Q   82 (164)
Q Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~   82 (164)
                      +++.|..+|.++-..  +++.+.+.+|.++..-.   +...|..+|..|.+...        ..+.+.+|.||..    .
T Consensus       308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--------~~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--------ILAIYRLALCYELGLGVE  377 (552)
T ss_pred             cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhCCCcC
Confidence            678899999998765  57788888998887665   45799999999988764        5677788888764    3


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc-CCHHHHHHHHH
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL-DRNAEAKEEFA  127 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~l~  127 (164)
                      .+...|..++.++....  .+.+.+.++..+... +.+..+.-.+.
T Consensus       378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~  421 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYL  421 (552)
T ss_pred             CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHH
Confidence            58999999999999875  445455555544442 55544444333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.19  E-value=0.051  Score=38.33  Aligned_cols=64  Identities=16%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ..++..++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|.+.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4566678999999999999999999999999999999999999999999999999999988774

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.11  Score=36.29  Aligned_cols=65  Identities=18%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           72 RFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ...+=..+...++|+.|..+.++.+..+|.++..+.-.|.+|.++|-+.-|+..+...+...|++
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            33455567889999999999999999999999999999999999999999999999999999998

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.12  E-value=0.025  Score=40.31  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=61.9

Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh-HHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC-KGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ++..|...+....+.+.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|....
T Consensus       106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~  177 (435)
T COG5191         106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR  177 (435)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence            46777777777788889999999999999999999999987 445667799999999999999999999944

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.06  E-value=0.033  Score=26.30  Aligned_cols=32  Identities=16%  Similarity=0.064  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHH--HHHHHhhccc
Q 031170           30 EALFENALLMDRCGEGEAVIKR--LEEALEIAED   61 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~--~~~a~~~~~~   61 (164)
                      +.++.+|..+..+|++++|+..  +.-+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            4577778888888888888888  4366666553

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=96.05  E-value=0.0095  Score=25.84  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHcCCcHHHHHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRL   52 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~   52 (164)
                      ...+|.++..+|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            444455555555555554443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.98  E-value=0.017  Score=27.68  Aligned_cols=30  Identities=23%  Similarity=0.092  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIA   59 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   59 (164)
                      +++..+|.+....++|++|+.-|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356667777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.96  E-value=0.12  Score=42.57  Aligned_cols=99  Identities=10%  Similarity=0.052  Sum_probs=77.5

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhCCCCchhhh
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-------KNVDEALKSYQELEIEDPNDFRPYF  107 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-------~~~~~A~~~~~~~~~~~p~~~~~~~  107 (164)
                      .-.++...+.|+.|+..|++.....|+...   ..++.+..|.....+       ..+++|+.-|++.- ..|.-+--++
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  556 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYL  556 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHH
Confidence            346777888999999999999999988543   245666666655432       25788888887744 3477777788


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      ..+.+|..+|++++-+..|.-+++..|...
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence            888999999999999999999999999874

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.46  Score=35.28  Aligned_cols=127  Identities=13%  Similarity=0.113  Sum_probs=92.6

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc--HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG--EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      .-.++-+.+...+++.+|++..+|....+++.+.+..  ..-+.+.+++++.+|.+........+.  .+..-...+...
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV--~~~~~~~~~~~~  166 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV--VEQAERSRNLEK  166 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH--HHHHhcccccch
Confidence            3566778889999999999999999999999888755  678999999999999854321111111  122222223467


Q ss_pred             HHHHHHHHHHHhCCCCchhhhhHHHHHHh------cCC------HHHHHHHHHHHHhhCCCcc
Q 031170           87 EALKSYQELEIEDPNDFRPYFCKGMIYSL------LDR------NAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~------~~~------~~~A~~~l~~~~~~~p~~~  137 (164)
                      +=+.+..+++..++.+..+|..+..++..      .|+      ...-++.-..++-.+|+|.
T Consensus       167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq  229 (421)
T KOG0529|consen  167 EELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ  229 (421)
T ss_pred             hHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence            77889999999999999999998887774      331      2344566677788899983

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.85  E-value=0.035  Score=42.37  Aligned_cols=91  Identities=15%  Similarity=-0.014  Sum_probs=73.0

Q ss_pred             HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170           40 DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ---KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL  116 (164)
Q Consensus        40 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  116 (164)
                      +..+.+..|+..|.+++...|.      ....+...+.++.+.   |+.-.|+.-...++..+|....+++.++.++.+.
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el  458 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL  458 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence            3444677889999999998887      444445555555543   4666777777788999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCc
Q 031170          117 DRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       117 ~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++.+|++....+....|.+
T Consensus       459 ~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  459 TRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             hhHHHhhhhHHHHhhcCchh
Confidence            99999999999998888866

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.79  E-value=0.021  Score=24.72  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHH
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQ   93 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~   93 (164)
                      +...+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44556666666666666665553

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.4  Score=34.13  Aligned_cols=132  Identities=14%  Similarity=0.092  Sum_probs=90.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCcHHHHH-------------------HHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPL--------SFEALFENALLMDRCGEGEAVIK-------------------RLEE   54 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~-------------------~~~~   54 (164)
                      |+-....+++++|+..|.+++.....        .......++.+|...|++..--+                   .++.
T Consensus        10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt   89 (421)
T COG5159          10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT   89 (421)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence            45567788999999999999987322        24457789999999997754322                   2233


Q ss_pred             HHhhccccchhhh---------------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCchhhh
Q 031170           55 ALEIAEDGNKLKE---------------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIE------DPNDFRPYF  107 (164)
Q Consensus        55 a~~~~~~~~~~~~---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~  107 (164)
                      .++..|...+..+                     ....-..+..++++.|.|..|+.....++..      .|+-...++
T Consensus        90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl  169 (421)
T COG5159          90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL  169 (421)
T ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence            4444443322111                     1222334677889999999999988777654      234456778


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      .-+.+|....+..++...+..+....
T Consensus       170 lESKvyh~irnv~KskaSLTaArt~A  195 (421)
T COG5159         170 LESKVYHEIRNVSKSKASLTAARTLA  195 (421)
T ss_pred             hhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence            88999999999999998888886654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=95.64  E-value=0.035  Score=24.87  Aligned_cols=30  Identities=30%  Similarity=0.444  Sum_probs=22.9

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALL   38 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~   38 (164)
                      |+.+.|..+|++++...|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            467788888888888888888888766543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.64  E-value=0.085  Score=29.64  Aligned_cols=58  Identities=17%  Similarity=0.094  Sum_probs=35.7

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL   95 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   95 (164)
                      .|.-+..+.+.++|+..++++++..++...   ...++-.+..+|...|+|.+++.+...=
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~---rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDRED---RFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444666677777777777776655221   2344446677777777777777766443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.29  Score=36.34  Aligned_cols=130  Identities=16%  Similarity=0.078  Sum_probs=87.6

Q ss_pred             hcCCchHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            7 EMGKTQDARNVFEEILAGNP----L-----SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p----~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      ..+++.+|...-+..+....    .     ....|+-+..++...|+...-...+...++...-........-....+-+
T Consensus       138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr  217 (493)
T KOG2581|consen  138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR  217 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence            45678888877776655321    1     24457777888888888777777666666543221111112333346778


Q ss_pred             HHHHccCHHHHHHHHHHHHHh--CCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           78 IKFLQKNVDEALKSYQELEIE--DPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~--~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|+..+.|++|-+...++.--  ..+  ...-++.+|.+-.-++++..|.+++-+++...|.+
T Consensus       218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            888899999998877765421  111  23446778888888999999999999999999985

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.64  Score=34.55  Aligned_cols=129  Identities=13%  Similarity=0.160  Sum_probs=97.0

Q ss_pred             cCCch-HHHHHHHHHHhcCCCCHHHHHHHHHHHH------------HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            8 MGKTQ-DARNVFEEILAGNPLSFEALFENALLMD------------RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         8 ~~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      .|.|+ +++..-.+++..+|....+|...-.++.            ++.-.++-+.+...+++.+|+      ...+|..
T Consensus        41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npk------sY~aW~h  114 (421)
T KOG0529|consen   41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPK------SYGAWHH  114 (421)
T ss_pred             ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCch------hHHHHHH
Confidence            34444 7888888899999988777754332221            222456778888999999999      7889998


Q ss_pred             HHHHHHHcc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc----CCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170           75 MAQIKFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL----DRNAEAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus        75 la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      ...+..+.+  +|..=+...+++++.+|.+..+|..+=.+..+.    ....+-+++..+++..++.+|....+
T Consensus       115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhy  188 (421)
T KOG0529|consen  115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHY  188 (421)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHH
Confidence            888888766  478889999999999999999987766665552    23567788999999999888654443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.60  E-value=0.087  Score=36.92  Aligned_cols=62  Identities=11%  Similarity=0.029  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170           14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus        14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |+.+|.+++...|++...+..+|.+....|+.-.|+-+|-+++-....      .+.+...+..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P------f~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP------FPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--------HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999976544      45555566655555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.38  E-value=0.48  Score=36.57  Aligned_cols=91  Identities=14%  Similarity=0.051  Sum_probs=68.4

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--ccccchhhhhhhHHHHHHHHHHHc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEI--AEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      |..+++.+-|..+|+-.++..++++.........+...++-..+..+|++++..  .++.     ..++|-.+-..-..-
T Consensus       411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k-----s~~Iw~r~l~yES~v  485 (656)
T KOG1914|consen  411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK-----SKEIWDRMLEYESNV  485 (656)
T ss_pred             HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh-----hHHHHHHHHHHHHhc
Confidence            456788888888888888888888888888888888888888888888888887  3321     356666666667777


Q ss_pred             cCHHHHHHHHHHHHHhCC
Q 031170           83 KNVDEALKSYQELEIEDP  100 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p  100 (164)
                      ||....++.-++-....|
T Consensus       486 GdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  486 GDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             ccHHHHHHHHHHHHHhcc
Confidence            888777777666555555

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.35  E-value=0.2  Score=28.20  Aligned_cols=62  Identities=6%  Similarity=-0.068  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh---HHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC---KGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      -.+..|.-++..++.++|+..+.++++..++...-+..   +..+|...|++.+.+.+.-.-+.+
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666778999999999999999988876655444   456777899999988876655544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=95.21  E-value=0.19  Score=34.21  Aligned_cols=58  Identities=12%  Similarity=0.107  Sum_probs=27.2

Q ss_pred             HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           39 MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        39 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      +++.++..+|+...+.-++..|.      +......+-+++.-.|+|++|..-++-+-...|++
T Consensus        11 LL~~~sL~dai~~a~~qVkakPt------da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPT------DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCc------cccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            34444444555555555554444      33333344444444555555555444444444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.08  E-value=0.083  Score=25.28  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ++..+|.+-...++|++|+.-|++++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5566777777777777777777777664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.58  Score=36.35  Aligned_cols=108  Identities=15%  Similarity=-0.041  Sum_probs=79.0

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHH-HHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRL-EEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      +...++...+.-.....+..+|.+..++.+++......|....+...+ +.+....|.+........-.+.+++.....|
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~  156 (620)
T COG3914          77 LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLG  156 (620)
T ss_pred             ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhc
Confidence            345677888899999999999999999999998887777666665555 4477887874322222222223688888999


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHH
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMI  112 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  112 (164)
                      ...++....+++....|.++.........
T Consensus       157 ~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         157 RTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            99999999999999988886654444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.07  E-value=1.1  Score=34.07  Aligned_cols=89  Identities=16%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             hhhcCCchHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHH-------HHHHHhhccccch-----hhhhhh
Q 031170            5 LSEMGKTQDARNVFE--EILAGNPLSFEALFENALLMDRCGEGEAVIKR-------LEEALEIAEDGNK-----LKEARD   70 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~-----~~~~~~   70 (164)
                      ....|+++++....+  +++..-|  ..-...++..+.++|.++.|+..       |+-|++...-...     ......
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~  348 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE  348 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence            345677777666664  2222222  23345566677777777777654       3333333211000     000366


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQEL   95 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~   95 (164)
                      .|..+|.....+|+++-|..+|+++
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            8889999999999999999999883

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.05  E-value=0.48  Score=32.94  Aligned_cols=85  Identities=16%  Similarity=0.026  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170           12 QDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ...++.+++++......      ......+|.-|+..|+|++|+++|+.+.......+=......+...+..|+...|+.
T Consensus       155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~  234 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV  234 (247)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            35566666666643321      234567899999999999999999999776654332222356677889999999999


Q ss_pred             HHHHHHHHHHH
Q 031170           86 DEALKSYQELE   96 (164)
Q Consensus        86 ~~A~~~~~~~~   96 (164)
                      +..+.+.-+++
T Consensus       235 ~~~l~~~leLl  245 (247)
T PF11817_consen  235 EDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHh
Confidence            98887765543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=95.04  E-value=0.11  Score=36.89  Aligned_cols=58  Identities=16%  Similarity=0.043  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL   95 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   95 (164)
                      +...+..|.+.|.+.+|+++.+++++.+|-      +...+..+-.++...||--.+++.|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            344566778888888888888888888887      6777777777888888877777777654

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.98  E-value=0.19  Score=37.52  Aligned_cols=83  Identities=11%  Similarity=-0.053  Sum_probs=63.4

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCC--------C-----C-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170            4 LLSEMGKTQDARNVFEEILAGNP--------L-----S-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL   65 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p--------~-----~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   65 (164)
                      .+++.|+|..|+--|..++....        .     +     ..+.-.+..||+..++.+-|+....+.|-.+|.    
T Consensus       185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~----  260 (569)
T PF15015_consen  185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS----  260 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc----
Confidence            45667777777777777766522        1     1     122446888999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHH
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSY   92 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~   92 (164)
                        ...-++..|.++-...+|.+|..-+
T Consensus       261 --~frnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  261 --YFRNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              6777888888998888888886644

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.90  E-value=0.12  Score=39.14  Aligned_cols=86  Identities=13%  Similarity=-0.087  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           25 NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        25 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      ..+++..|..+|...+.+|+++-|..+|+++-+.              -.+..+|...|+.+.=.+....+....  +..
T Consensus       343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n  406 (443)
T PF04053_consen  343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLLLLYSSTGDREKLSKLAKIAEERG--DIN  406 (443)
T ss_dssp             CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHHHHHHHCT-HHHHHHHHHHHHHTT---HH
T ss_pred             hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccHHHHHHhCCHHHHHHHHHHHHHcc--CHH
Confidence            3457889999999999999999999988886322              124456677777655555554444331  111


Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170          105 PYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus       105 ~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                         ..-.++...|+.++.+..|.+.
T Consensus       407 ---~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  407 ---IAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             ---HHHHHHHHHT-HHHHHHHHHHT
T ss_pred             ---HHHHHHHHcCCHHHHHHHHHHc
Confidence               2223445578888888777665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.85  E-value=0.17  Score=23.83  Aligned_cols=30  Identities=23%  Similarity=0.169  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHH--HHHHhCC
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQ--ELEIEDP  100 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~--~~~~~~p  100 (164)
                      .+..+|-.+..+|++++|+..|+  -+...+|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            34455666666666666666633  4444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.55  E-value=0.11  Score=25.72  Aligned_cols=25  Identities=28%  Similarity=0.263  Sum_probs=17.5

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170           33 FENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus        33 ~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      +.+|..|.+.|+.+.|...+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566777777777777777777774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.49  E-value=1.6  Score=33.24  Aligned_cols=85  Identities=8%  Similarity=0.043  Sum_probs=67.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 031170           17 VFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELE   96 (164)
Q Consensus        17 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   96 (164)
                      -+++-|+.+|++...|+.+..-+..+|.+++-.+.+++...-.|-      ...+|...-.--+..+++......|.+++
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~------~~~aw~ly~s~ELA~~df~svE~lf~rCL  103 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPI------MEHAWRLYMSGELARKDFRSVESLFGRCL  103 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcc------ccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence            567778899999999999999999999999999999999988887      55666654444456678998888998888


Q ss_pred             HhCCCCchhhhh
Q 031170           97 IEDPNDFRPYFC  108 (164)
Q Consensus        97 ~~~p~~~~~~~~  108 (164)
                      ...- +.+.|..
T Consensus       104 ~k~l-~ldLW~l  114 (660)
T COG5107         104 KKSL-NLDLWML  114 (660)
T ss_pred             hhhc-cHhHHHH
Confidence            7632 3444433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=0.049  Score=39.37  Aligned_cols=110  Identities=17%  Similarity=0.151  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhcc---ccchh----------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAE---DGNKL----------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      .+.-.++.++++.|..-+.++++...   .....          .........++.+-+..+.+..|+..-..++..++.
T Consensus       228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s  307 (372)
T KOG0546|consen  228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS  307 (372)
T ss_pred             cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence            45567888888888888887776432   10000          001223335778888999999999888888888889


Q ss_pred             CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170          102 DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR  144 (164)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~  144 (164)
                      ...+++.++..+....++++|++.+..+....|.+......+.
T Consensus       308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~  350 (372)
T KOG0546|consen  308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE  350 (372)
T ss_pred             hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence            9999999999999999999999999999999999955444443

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.47  E-value=1.1  Score=31.41  Aligned_cols=83  Identities=14%  Similarity=0.186  Sum_probs=50.5

Q ss_pred             HHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH----------------HHhCCCCchhhhhHHHHH
Q 031170           50 KRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL----------------EIEDPNDFRPYFCKGMIY  113 (164)
Q Consensus        50 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~----------------~~~~p~~~~~~~~~~~~~  113 (164)
                      ++..++++-........+++..+..+|..+.+.|++.+|..+|-..                ....|...+.+..++.+.
T Consensus        71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~  150 (260)
T PF04190_consen   71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQ  150 (260)
T ss_dssp             HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            3334444433122223346788899999999999999998887431                122455566666666644


Q ss_pred             H-hcCCHHHHHHHHHHHHhh
Q 031170          114 S-LLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       114 ~-~~~~~~~A~~~l~~~~~~  132 (164)
                      . ..++...|...+...++.
T Consensus       151 yL~l~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  151 YLCLGNLRDANELFDTFTSK  170 (260)
T ss_dssp             HHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHH
Confidence            4 379999998887777665

; PDB: 3LKU_E 2WPV_G.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.46  E-value=0.95  Score=30.44  Aligned_cols=52  Identities=15%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             CHHHHHHHHHHHHHh-CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           84 NVDEALKSYQELEIE-DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .=+.|...|.++-.. .-++++..+.+|..|. .-+.++++..|.+++.+.+.+
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~  173 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD  173 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC
Confidence            334566655554332 1235556666666555 456777888888887776554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.38  E-value=2.4  Score=34.76  Aligned_cols=107  Identities=9%  Similarity=-0.009  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc-
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF-  103 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-  103 (164)
                      .|......++...-..++++|..++.++...-+....   ...........|.+....|+.++|++..+.++..-|... 
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            3555667788888999999999998887765443111   001234555678899999999999999999998877643 


Q ss_pred             ----hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170          104 ----RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus       104 ----~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                          .+....|.+..-.|++++|..+...+.+...
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~  528 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR  528 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence                3456678888889999999999999887743

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.35  E-value=0.74  Score=36.86  Aligned_cols=26  Identities=19%  Similarity=0.024  Sum_probs=15.2

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHH
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQE   94 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~   94 (164)
                      ..++..+|..+..+..|++|.++|.+
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555566666666666666666554

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=94.28  E-value=1.3  Score=31.38  Aligned_cols=119  Identities=16%  Similarity=0.090  Sum_probs=80.8

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCC----------HHH---HHHHH-HHHHHcCCcHHHHHHHHHHHhhccccchhhhh
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLS----------FEA---LFENA-LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA   68 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~----------~~~---~~~la-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   68 (164)
                      ..++...||..|++..+++++.-.++          .+.   +..+| +++.++++|.+++...-+-...-.+-     .
T Consensus        43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl-----P  117 (309)
T PF07163_consen   43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL-----P  117 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC-----C
Confidence            44566678999999999988753211          121   22333 57889999999988877766543320     2


Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc--hhhhhHHHHHHh-----cCCHHHHHHHHH
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF--RPYFCKGMIYSL-----LDRNAEAKEEFA  127 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~~~~~~~-----~~~~~~A~~~l~  127 (164)
                      +.+.-.--.+|.+.++.....+.-..-+.. |.+.  .-+-..+.+|..     .|.+++|.+...
T Consensus       118 pkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~  182 (309)
T PF07163_consen  118 PKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV  182 (309)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence            344445566788999999888888777765 5543  234555666655     899999999873

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.27  E-value=0.38  Score=40.58  Aligned_cols=128  Identities=15%  Similarity=0.038  Sum_probs=90.5

Q ss_pred             hhcCCchHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh--hhhhhHHHHHH
Q 031170            6 SEMGKTQDARN------VFE-EILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL--KEARDVRFIMA   76 (164)
Q Consensus         6 ~~~~~~~~A~~------~~~-~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la   76 (164)
                      ...|.+.+|.+      ++. ..-.++|.....+..++.++...+++++|+..-.+++-+....-..  ......+..++
T Consensus       943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen  943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred             hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence            34556665555      665 3444678888999999999999999999999988877765332111  11234455778


Q ss_pred             HHHHHccCHHHHHHHHHHHHHh-----CC---CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           77 QIKFLQKNVDEALKSYQELEIE-----DP---NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~-----~p---~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ...+..+....|+..+.++...     .|   .-.....+++.++...++++.|+++++.|.+..
T Consensus      1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888898888887664     22   222334566777777889999999999998854

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.26  E-value=2  Score=33.48  Aligned_cols=119  Identities=12%  Similarity=0.063  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH-HHHHHHHHccCHHHHHH
Q 031170           12 QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF-IMAQIKFLQKNVDEALK   90 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~la~~~~~~~~~~~A~~   90 (164)
                      +.+...|...+...|..-..|...|....+.|..+.+...|++++.-.|-      +...|. .++.+-...|+.+.-..
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~------SvdlW~~Y~~f~~n~~~d~~~lr~  135 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL------SVDLWLSYLAFLKNNNGDPETLRD  135 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHhccCCCHHHHHH
Confidence            56777888888889999899999999999999999999999999998886      556665 45555556777777778


Q ss_pred             HHHHHHHhCCCC---chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           91 SYQELEIEDPND---FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        91 ~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|+.+....-.+   .+.|-..-.....++++..-...|.+.+...-..
T Consensus       136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~  184 (577)
T KOG1258|consen  136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQ  184 (577)
T ss_pred             HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhH
Confidence            888887764433   3445555555566788888888888887765433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=94.10  E-value=0.15  Score=37.98  Aligned_cols=58  Identities=21%  Similarity=0.368  Sum_probs=39.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHH--------hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEI--------EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      .+.+++.-.|||..|++.++.+--        ..+-....++..|.+|.+++++..|++.|...+.
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788888888887765311        0122445667788888888888888888877653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.10  E-value=0.17  Score=25.03  Aligned_cols=25  Identities=12%  Similarity=0.069  Sum_probs=16.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      +.+|..|+..|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3566677777777777777777664

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.06  E-value=0.64  Score=32.16  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=23.6

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCC
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPL   27 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~   27 (164)
                      +|++..+.|+|++.+.++.+++..+|.
T Consensus         7 ~Aklaeq~eRy~dmv~~mk~~~~~~~e   33 (236)
T PF00244_consen    7 LAKLAEQAERYDDMVEYMKQLIEMNPE   33 (236)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence            477888999999999999999999774

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.00  E-value=1.4  Score=36.97  Aligned_cols=115  Identities=17%  Similarity=0.054  Sum_probs=68.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE--------------   67 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------   67 (164)
                      |......|...+|++.|-++     ++|..+.....+..+.|.|++-+.++.-+-+......-...              
T Consensus      1111 akAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1111 AKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTEL 1185 (1666)
T ss_pred             HHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHH
Confidence            44555666677777776544     56666777777777778887777777666554432110000              


Q ss_pred             -------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           68 -------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        68 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                             +..-....|+-.+..+.|+.|.-+|..+        ..|-.++..+..+|++..|+..-+++
T Consensus      1186 E~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1186 EEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             HHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                   0111112344555566666665555432        23446777888888888888877666

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.98  E-value=0.96  Score=31.78  Aligned_cols=106  Identities=13%  Similarity=-0.028  Sum_probs=50.6

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      ..++|++|++++...              +..+++.|++..|.++..-.++......... +....-.+..+....+.-+
T Consensus         2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~-~~~~~~rl~~l~~~~~~~~   66 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPV-DEESIARLIELISLFPPEE   66 (260)
T ss_dssp             HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT-
T ss_pred             ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCCc
Confidence            457788888777655              3455555555555554444444322111110 1112223444443333221


Q ss_pred             -HHHHHHHHHHHhC------CCCchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170           87 -EALKSYQELEIED------PNDFRPYFCKGMIYSLLDRNAEAKEEFA  127 (164)
Q Consensus        87 -~A~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~l~  127 (164)
                       +-.++..++++-.      -.++..+..+|..+...|++.+|..+|-
T Consensus        67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence             1223333333322      2356778888999999888888887764

; PDB: 3LKU_E 2WPV_G.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.90  E-value=0.55  Score=29.47  Aligned_cols=56  Identities=16%  Similarity=0.023  Sum_probs=30.9

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           37 LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      .+...+|+-++--..+....+....      ++.+++.+|..|-+.|+..++-+.+.++-+.
T Consensus        94 d~lv~~~kkDqLdki~~~l~kn~~~------~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   94 DILVKQGKKDQLDKIYNELKKNEEI------NPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHTT-HHHHHHHHHHH-----S-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHHHhhccCC------CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3455666666655555555543222      4667777777777777777777777666543

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.86  E-value=0.19  Score=22.30  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=13.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCK  109 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~  109 (164)
                      +++.+...|++++...|.+...|...
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            34455555555555555544444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.84  E-value=0.74  Score=32.64  Aligned_cols=101  Identities=10%  Similarity=0.087  Sum_probs=64.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA   68 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   68 (164)
                      ||.+|+..|+|.+-...+.++.......            .+++-.-..+|-.+.+..+-..+|++++.+-.--..+.--
T Consensus       151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm  230 (440)
T KOG1464|consen  151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM  230 (440)
T ss_pred             HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence            4667788888888777777765542211            2233334467788888888888899998875432211111


Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      ..+.-.-|.++.+.|+|++|..-|-.+.+....
T Consensus       231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE  263 (440)
T KOG1464|consen  231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE  263 (440)
T ss_pred             hHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence            111122366788999999998888888776443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=93.65  E-value=1.7  Score=32.36  Aligned_cols=56  Identities=18%  Similarity=0.043  Sum_probs=37.7

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHH--HHHHHH--HHHHHcCCcHHHHHHHHHHHhh
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFE--ALFENA--LLMDRCGEGEAVIKRLEEALEI   58 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~la--~~~~~~~~~~~A~~~~~~a~~~   58 (164)
                      ..++..++|..|...++.+...-|....  .+..+.  .-+-..-++.+|.+.+++.+..
T Consensus       139 ~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  139 KELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4567788888999988888886444433  333333  3344666778888888887765

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.63  E-value=0.4  Score=40.46  Aligned_cols=132  Identities=14%  Similarity=0.061  Sum_probs=90.7

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc-cchhhhh-hh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED-GNKLKEA-RD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~-~~   70 (164)
                      +|+++...|++++|+..-.++.-.        .|+....+..++...+..+....|+..+.++..+-.- .+...+. ..
T Consensus       979 La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~ 1058 (1236)
T KOG1839|consen  979 LAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTAL 1058 (1236)
T ss_pred             HHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhh
Confidence            466788899999999988777554        3455667888998999999999999999888775311 1111111 33


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------chhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPND--------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ....++.++...++++.|+++.+.++..+..-        ...+..++.++.-++++..|....+....+
T Consensus      1059 ~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1059 SFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            33477888889999999999999999864331        122344555555567776666665555444

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.60  E-value=0.15  Score=38.83  Aligned_cols=95  Identities=11%  Similarity=0.055  Sum_probs=71.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      +.++...|+|+.|...+..+-+.-.....+...+-...+..|++++|....+-.+.-.-.      .+++...-|...-.
T Consensus       330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie------~~ei~~iaa~sa~~  403 (831)
T PRK15180        330 SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE------DEEVLTVAAGSADA  403 (831)
T ss_pred             HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC------ChhheeeecccHHH
Confidence            467788999999999998777665555566666677889999999999887777664433      24444444455567


Q ss_pred             ccCHHHHHHHHHHHHHhCCCC
Q 031170           82 QKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      .|-++++.-++.+++.++|..
T Consensus       404 l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        404 LQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HhHHHHHHHHHHHHhccCChh
Confidence            788999999999999988764

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.37  E-value=1.3  Score=32.02  Aligned_cols=96  Identities=14%  Similarity=0.086  Sum_probs=61.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS--------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVR   72 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   72 (164)
                      ||.+|...++|..|...+.- +..+.+.        ...+..+|.+|.+.++..+|..+..++--.-.......-.....
T Consensus       109 LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~k  187 (399)
T KOG1497|consen  109 LASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYK  187 (399)
T ss_pred             HHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence            46788999999999888743 3333321        23467899999999999999888877543222111110012333


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      ...|++.-..++|-+|...|-++..
T Consensus       188 vc~ARvlD~krkFlEAAqrYyels~  212 (399)
T KOG1497|consen  188 VCYARVLDYKRKFLEAAQRYYELSQ  212 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777888888777766543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.34  E-value=0.59  Score=33.33  Aligned_cols=59  Identities=15%  Similarity=0.053  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      .....+..|...|.+.+|+...++++..+|-+...+..+-.++...|+--.++.++.+.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            44456778899999999999999999999999999999999999999977777777665

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.31  E-value=2.1  Score=30.46  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=71.3

Q ss_pred             CCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh-hhhhHHHHHHHHHHHcc
Q 031170            9 GKTQDARNVFEEILAGNPLSF----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK-EARDVRFIMAQIKFLQK   83 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~~   83 (164)
                      .++++|+.-|++++...|.-.    .++..+..+.+.+++|++-...|.+.+..-.+..... +...+. .+-+.-....
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN-~IlDyiStS~  119 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN-SILDYISTSK  119 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHhhhh
Confidence            478999999999999987653    3566677899999999999888888766432211100 000010 1111111222


Q ss_pred             CHHHHHHHHHHHHHh--CCCCchhhh----hHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           84 NVDEALKSYQELEIE--DPNDFRPYF----CKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~--~p~~~~~~~----~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      +.+--..+|+..+..  +..+.+.|+    .+|.+++..|++.+-...+++....
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S  174 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS  174 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence            233333333332221  233444554    5788888888887777777666443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.17  E-value=0.58  Score=32.78  Aligned_cols=62  Identities=8%  Similarity=-0.088  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           48 VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        48 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      |..+|.+|+.+.|.      ....+..+|.++...|+.=.|+-+|-+++......+.+.-++..++..
T Consensus         1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999      778888999999999999999999988886543345566666666555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.11  E-value=4.9  Score=36.68  Aligned_cols=112  Identities=19%  Similarity=0.166  Sum_probs=77.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-chh----------hhhhh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-NKL----------KEARD   70 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~----------~~~~~   70 (164)
                      |++-...|+++.|-...-.+.+..  -+.+....|..+-.+|+...|+..+++.+..+-.+ ..+          .....
T Consensus      1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~ 1754 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKK 1754 (2382)
T ss_pred             HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhh
Confidence            455566889999988888876654  66788888999999999999999999999654322 111          00122


Q ss_pred             HHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           71 VRFIMAQIKFLQKNV--DEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        71 ~~~~la~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      +.+.++.-....+++  +.-+++|..+....|.....++.+|..|.+
T Consensus      1755 ~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1755 AKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence            333333333344443  345788899999999888888888865554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.97  E-value=3.5  Score=33.92  Aligned_cols=93  Identities=17%  Similarity=0.091  Sum_probs=64.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      |.+....|++++|+++.+.++..-|.+     .-+...+|.+..-.|++++|..+...+.+....-+...-...+....+
T Consensus       465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s  544 (894)
T COG2909         465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQS  544 (894)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            456677899999999999999987765     345678889999999999999999998887433111111122333557


Q ss_pred             HHHHHccC--HHHHHHHHHH
Q 031170           77 QIKFLQKN--VDEALKSYQE   94 (164)
Q Consensus        77 ~~~~~~~~--~~~A~~~~~~   94 (164)
                      .+...+|+  +.+....+..
T Consensus       545 ~il~~qGq~~~a~~~~~~~~  564 (894)
T COG2909         545 EILEAQGQVARAEQEKAFNL  564 (894)
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            78888883  3333444433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.96  E-value=0.75  Score=37.17  Aligned_cols=113  Identities=15%  Similarity=0.075  Sum_probs=57.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH---
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI---   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~---   78 (164)
                      |.-|...|+|+-|.++|.++-.        .......|-+.|+|+.|..+-+++.....       ....+...+.-   
T Consensus       772 adhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~~e~-------t~~~yiakaedlde  836 (1636)
T KOG3616|consen  772 ADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHGPEA-------TISLYIAKAEDLDE  836 (1636)
T ss_pred             HHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcCchh-------HHHHHHHhHHhHHh
Confidence            3445566666666666655411        11223455666777776665555433211       12233333333   


Q ss_pred             ----------HHHccCHHHHHHHHHHH------HH----hCCCC-chhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           79 ----------KFLQKNVDEALKSYQEL------EI----EDPND-FRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        79 ----------~~~~~~~~~A~~~~~~~------~~----~~p~~-~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                                |...|..++|+..|.+.      +.    ..|+. .+.+...+.-+...|+.+.|...|-++
T Consensus       837 hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  837 HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence                      34444555555555542      11    11221 123445666667778888887777665

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.74  E-value=4.3  Score=34.35  Aligned_cols=85  Identities=12%  Similarity=-0.011  Sum_probs=47.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhc----------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAG----------------------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA   59 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   59 (164)
                      |.+....+-|++|...|.+--..                      .-+.+.+|..+|.+.++.|...+|++.|-++    
T Consensus      1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence            34455566677777776543110                      1134566666666666666666666666554    


Q ss_pred             cccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           60 EDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        60 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                       +      ++..+...-++..+.|.|++-+.++.-+-+
T Consensus      1131 -d------Dps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1131 -D------DPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred             -C------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence             1      233444455555566666666666655443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.69  E-value=1.1  Score=28.30  Aligned_cols=50  Identities=18%  Similarity=0.084  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  118 (164)
                      ....+..+.-.+..|++.-|......++..+|++..+...++.++.++|.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            45566778888899999999999999999999999888888888877654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.59  E-value=2.7  Score=29.80  Aligned_cols=125  Identities=10%  Similarity=-0.103  Sum_probs=75.2

Q ss_pred             chhhhhcC-CchHHHHHHHHHHhc----CCC---C-------HHHHHHHHHHHHHcCCcHH---HHHHHHHHHhhccccc
Q 031170            2 ARLLSEMG-KTQDARNVFEEILAG----NPL---S-------FEALFENALLMDRCGEGEA---VIKRLEEALEIAEDGN   63 (164)
Q Consensus         2 a~~~~~~~-~~~~A~~~~~~~l~~----~p~---~-------~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~~~~~   63 (164)
                      |......+ ++++|..+++++.+.    .+.   .       ..++..++.++...+.++.   |...++.+-.-.|+  
T Consensus        42 G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--  119 (278)
T PF08631_consen   42 GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--  119 (278)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--
Confidence            34456777 999999999999887    221   1       2346678889998887653   45555555555555  


Q ss_pred             hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH--HhcCCHHHHHHHHHHHHhh
Q 031170           64 KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY--SLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        64 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~A~~~l~~~~~~  132 (164)
                          .+......-.+..+.++.+.+.+.+.+++...+-....+-.....+  ........+...+...+..
T Consensus       120 ----~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~  186 (278)
T PF08631_consen  120 ----KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN  186 (278)
T ss_pred             ----CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence                3445544444555578999999999998886442222221111111  1133345566666665544

It is also involved in sporulation [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.11  E-value=0.9  Score=33.86  Aligned_cols=96  Identities=11%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc--cchhhhhhhHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAED--GNKLKEARDVRFIMA   76 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~la   76 (164)
                      |.-|...|+.+.|++.|.++-......   ...+.++..+.+..|+|.....+..++.+....  +......+.+...-|
T Consensus       157 ~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ag  236 (466)
T KOG0686|consen  157 GDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAG  236 (466)
T ss_pred             HHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHH
Confidence            556788999999999999965544332   445677778888999999999999888776211  011111244555677


Q ss_pred             HHHHHccCHHHHHHHHHHHHH
Q 031170           77 QIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      ...+.+++|..|.++|-.+..
T Consensus       237 La~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  237 LANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            888888899999999877654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.08  E-value=2.3  Score=34.57  Aligned_cols=23  Identities=13%  Similarity=-0.047  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHH
Q 031170           72 RFIMAQIKFLQKNVDEALKSYQE   94 (164)
Q Consensus        72 ~~~la~~~~~~~~~~~A~~~~~~   94 (164)
                      +-.+++-|...|+|+-|.+.|.+
T Consensus       768 y~~iadhyan~~dfe~ae~lf~e  790 (1636)
T KOG3616|consen  768 YGEIADHYANKGDFEIAEELFTE  790 (1636)
T ss_pred             chHHHHHhccchhHHHHHHHHHh
Confidence            33455555555666555555543

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.08  E-value=3.7  Score=30.17  Aligned_cols=93  Identities=15%  Similarity=-0.032  Sum_probs=67.0

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh-------------------h
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL-------------------K   66 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------~   66 (164)
                      .+..+.++-+..-..++.++|....++..++.-  +..-..+|...++++++........                   .
T Consensus       195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtn  272 (556)
T KOG3807|consen  195 WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTN  272 (556)
T ss_pred             HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccc
Confidence            345677788888899999999999998887753  2334567888888888765321110                   0


Q ss_pred             hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 031170           67 EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP  100 (164)
Q Consensus        67 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  100 (164)
                      ....+...++.|..++|+..+|++.++...+..|
T Consensus       273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence            0122333678899999999999999999888777

>PF12854 PPR_1: PPR repeat

Probab=92.04  E-value=0.53  Score=21.67  Aligned_cols=27  Identities=7%  Similarity=-0.016  Sum_probs=20.8

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEE   54 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~   54 (164)
                      +.-.|..+...+.+.|+.++|.++|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            445677778888888888888888765

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=91.99  E-value=1.1  Score=29.89  Aligned_cols=48  Identities=23%  Similarity=0.091  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           48 VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        48 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      .++..++.++..|+       +.++..++.++...|+.++|....+++....|.+
T Consensus       130 ~~~~a~~~l~~~P~-------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  130 YIEWAERLLRRRPD-------PNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            34555666666675       7777777778888888888888888887777754

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.99  E-value=0.97  Score=33.84  Aligned_cols=65  Identities=11%  Similarity=0.184  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccc---hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGN---KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      +.++..++.-.|+|..|++.++. ++++...-   .+......++.+|-+|..+++|..|++.|.+++-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666788999999999988765 33322210   0111356677899999999999999999999865

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.98  E-value=3.9  Score=37.28  Aligned_cols=103  Identities=13%  Similarity=0.085  Sum_probs=77.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---
Q 031170           26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED-PN---  101 (164)
Q Consensus        26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~---  101 (164)
                      ..-.+.|...|.+....|+++-|...+-+|.+..+        +.+....|.....+|+-..|+..+++.+..+ |+   
T Consensus      1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred             chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence            34577899999999999999999999999888764        5788999999999999999999999998543 33   


Q ss_pred             -------Cc------hhhhhHHHHHHhcCCH--HHHHHHHHHHHhhCCCc
Q 031170          102 -------DF------RPYFCKGMIYSLLDRN--AEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       102 -------~~------~~~~~~~~~~~~~~~~--~~A~~~l~~~~~~~p~~  136 (164)
                             ..      .+.+..+......|+.  +.-+.+|+.+....|..
T Consensus      1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred             CccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence                   11      1223333444445553  33567888999999865

>PRK11619 lytic murein transglycosylase; Provisional

Probab=91.97  E-value=5.5  Score=32.01  Aligned_cols=80  Identities=11%  Similarity=0.038  Sum_probs=52.4

Q ss_pred             cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHH
Q 031170           45 GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE  124 (164)
Q Consensus        45 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~  124 (164)
                      ..+|...+..+.....+       ....-....+....++|+....++..............|.+|..+...|+.++|..
T Consensus       295 ~~~a~~w~~~~~~~~~~-------~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~  367 (644)
T PRK11619        295 TDEQAKWRDDVIMRSQS-------TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEE  367 (644)
T ss_pred             CHHHHHHHHhcccccCC-------cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHH
Confidence            45555555554433222       22333334455688899888888777544434456677888888888999999999


Q ss_pred             HHHHHHh
Q 031170          125 EFAKYRQ  131 (164)
Q Consensus       125 ~l~~~~~  131 (164)
                      .|.++..
T Consensus       368 ~~~~~a~  374 (644)
T PRK11619        368 ILRQLMQ  374 (644)
T ss_pred             HHHHHhc
Confidence            9998743

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.86  E-value=4.6  Score=31.74  Aligned_cols=89  Identities=16%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCC-CHHHHHHHHHHH-HHcCCcHHHHHHHHHH-----HhhccccchhhhhhhHHHHHHH
Q 031170            5 LSEMGKTQDARNVFEEILAGNPL-SFEALFENALLM-DRCGEGEAVIKRLEEA-----LEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a-----~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      +.+.|-+..|.++..-+++++|. +|-+...+..+| ++..+|.=-+..++..     +..-|+       ..+-..+|.
T Consensus       352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-------~~yS~AlA~  424 (665)
T KOG2422|consen  352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-------FGYSLALAR  424 (665)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-------chHHHHHHH
Confidence            45678899999999999999998 877766655544 4556666556655554     233343       455567777


Q ss_pred             HHHHccC---HHHHHHHHHHHHHhCC
Q 031170           78 IKFLQKN---VDEALKSYQELEIEDP  100 (164)
Q Consensus        78 ~~~~~~~---~~~A~~~~~~~~~~~p  100 (164)
                      .|.....   -..|...+.+|++..|
T Consensus       425 f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  425 FFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            7777766   6788888899988877

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.81  E-value=1.7  Score=32.49  Aligned_cols=58  Identities=9%  Similarity=-0.064  Sum_probs=31.9

Q ss_pred             hhhhcCCchHHHHHHHHHH--hcCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170            4 LLSEMGKTQDARNVFEEIL--AGNPLSFE--ALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l--~~~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      .|...+.|+.|.....+..  ....++.+  ..+-+|.+..-+++|..|.+++-+|+...|.
T Consensus       218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            4455556666655555442  11112222  2445666666666666666666666666665

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=91.68  E-value=2.2  Score=31.47  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 031170           11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEE   54 (164)
Q Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~   54 (164)
                      .-+|+-+++.++...|.+......+..+|...|-.+.|...|..
T Consensus       199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~  242 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            34677788888888888888888888888888888888777755

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.53  E-value=5.3  Score=31.67  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170           14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQ   93 (164)
Q Consensus        14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   93 (164)
                      .....++++...++. +-.+.   +..+.|+++.|.++..++     +      +..-|..||+.....+++..|.+|+.
T Consensus       626 ~~g~~e~AL~~s~D~-d~rFe---lal~lgrl~iA~~la~e~-----~------s~~Kw~~Lg~~al~~~~l~lA~EC~~  690 (794)
T KOG0276|consen  626 SQGMKEQALELSTDP-DQRFE---LALKLGRLDIAFDLAVEA-----N------SEVKWRQLGDAALSAGELPLASECFL  690 (794)
T ss_pred             hccchHhhhhcCCCh-hhhhh---hhhhcCcHHHHHHHHHhh-----c------chHHHHHHHHHHhhcccchhHHHHHH
Confidence            334455666665543 32333   446778888887665554     2      24556778888888888888888888


Q ss_pred             HHHHh--------CCCCchhhhh------------HH-HHHHhcCCHHHHHHHHHHHHhh
Q 031170           94 ELEIE--------DPNDFRPYFC------------KG-MIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        94 ~~~~~--------~p~~~~~~~~------------~~-~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ++-..        ...+.+.+-.            .+ .+++..|+++++.+.|..--++
T Consensus       691 ~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~  750 (794)
T KOG0276|consen  691 RARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRL  750 (794)
T ss_pred             hhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcC
Confidence            75332        1222222211            12 3566688888888887765333

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=91.51  E-value=4.3  Score=29.80  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=87.2

Q ss_pred             hhhhcCCchHHHHHHHHHHhc--CCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHH------------------
Q 031170            4 LLSEMGKTQDARNVFEEILAG--NPLS--------FEALFENALLMDRCGEGEAVIKRLEEA------------------   55 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a------------------   55 (164)
                      ......++++++..|..++..  .|.+        .+....+|.++.+.|+.++-...++..                  
T Consensus        13 ~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~   92 (411)
T KOG1463|consen   13 NLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRS   92 (411)
T ss_pred             HhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            344566789999999999884  2222        345678999999999877654443332                  


Q ss_pred             -Hhhccccchh---------------------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCchhhh
Q 031170           56 -LEIAEDGNKL---------------------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP------NDFRPYF  107 (164)
Q Consensus        56 -~~~~~~~~~~---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~  107 (164)
                       ++..+.....                     .-.......+..+|+..++|.+|+.....++..-.      .-.+..+
T Consensus        93 Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~l  172 (411)
T KOG1463|consen   93 LVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHL  172 (411)
T ss_pred             HHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehh
Confidence             2222111100                     00123334578899999999999999888776422      2345677


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      .-+.+|....+..+|...+..+....
T Consensus       173 lESK~y~~l~Nl~KakasLTsART~A  198 (411)
T KOG1463|consen  173 LESKAYHALRNLPKAKASLTSARTTA  198 (411)
T ss_pred             hhhHHHHHHhcchhHHHHHHHHHHhh
Confidence            88999999999999999999886654

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=91.12  E-value=2.4  Score=26.22  Aligned_cols=79  Identities=13%  Similarity=-0.069  Sum_probs=0.0

Q ss_pred             cCCchHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            8 MGKTQDARNVFEEILAGNPLS---------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      .+.-..-..++++++....++         ..+|...+....      .+...|..+....-...    .+..+...|..
T Consensus        39 ~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~----~A~fY~~wA~~  108 (126)
T PF08311_consen   39 GGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTK----LALFYEEWAEF  108 (126)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTT----BHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHH----HHHHHHHHHHH


Q ss_pred             HHHccCHHHHHHHHHHHH
Q 031170           79 KFLQKNVDEALKSYQELE   96 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~   96 (164)
                      +...|++++|.+.|+.+|
T Consensus       109 le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  109 LEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHTT-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhC

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.07  E-value=5.7  Score=30.94  Aligned_cols=84  Identities=17%  Similarity=0.049  Sum_probs=40.4

Q ss_pred             HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170           38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD  117 (164)
Q Consensus        38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  117 (164)
                      ++....++.-....+.+.+....+       .-+++.++.+|... ..++-...+++.++.+-++...-..++..|.. +
T Consensus        75 ~f~~n~k~~~veh~c~~~l~~~e~-------kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i  145 (711)
T COG1747          75 IFGDNHKNQIVEHLCTRVLEYGES-------KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I  145 (711)
T ss_pred             HhccchHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h
Confidence            333333444444444555554443       44455555555544 44444555555555555544444444444433 4


Q ss_pred             CHHHHHHHHHHHH
Q 031170          118 RNAEAKEEFAKYR  130 (164)
Q Consensus       118 ~~~~A~~~l~~~~  130 (164)
                      +.+.+..+|.+++
T Consensus       146 k~sk~a~~f~Ka~  158 (711)
T COG1747         146 KKSKAAEFFGKAL  158 (711)
T ss_pred             chhhHHHHHHHHH
Confidence            5555555555554

>PF13041 PPR_2: PPR repeat family

Probab=90.76  E-value=0.9  Score=22.75  Aligned_cols=31  Identities=13%  Similarity=-0.014  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIA   59 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   59 (164)
                      .-.|..+...+.+.|++++|.++|++..+.+
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g   33 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG   33 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence            3456777788888888888888888887754

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=90.62  E-value=1  Score=30.81  Aligned_cols=58  Identities=17%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      .+...+..++|+...+.-++.+|.+......+-.++.-.|+|++|...++-+-++.|+
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~   67 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ   67 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence            3566788999999999999999999998888889999999999999999999999887

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=90.62  E-value=0.53  Score=20.53  Aligned_cols=25  Identities=16%  Similarity=0.042  Sum_probs=13.6

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170           33 FENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus        33 ~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      ..+-..+.+.|++++|...+++..+
T Consensus         4 ~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    4 NSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHhH
Confidence            3444555556666666655555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family

Probab=90.52  E-value=5.1  Score=28.92  Aligned_cols=126  Identities=14%  Similarity=0.087  Sum_probs=83.7

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH----Hhhcccc-------chhhhhhhH--HH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEA----LEIAEDG-------NKLKEARDV--RF   73 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----~~~~~~~-------~~~~~~~~~--~~   73 (164)
                      ..+++.+.++..++.+..+|--.+.++..+.++.+.| ++.+...+...    +++.|.-       +.+..+...  |+
T Consensus       111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL  189 (301)
T TIGR03362       111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWL  189 (301)
T ss_pred             hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHH
Confidence            4567889999999999999999999999999999999 56665554443    3333331       111111111  11


Q ss_pred             ----------------------------HHHHHHHHccCHHHHHHHHHHHHHhCCC---CchhhhhHHHHHHhcCCHHHH
Q 031170           74 ----------------------------IMAQIKFLQKNVDEALKSYQELEIEDPN---DFRPYFCKGMIYSLLDRNAEA  122 (164)
Q Consensus        74 ----------------------------~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~A  122 (164)
                                                  .-+......+..+.|+..++..+...+.   .....+.++.++...|..+-|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA  269 (301)
T TIGR03362       190 AQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA  269 (301)
T ss_pred             HhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence                                        1134456677888888888765443222   233456778888889999999


Q ss_pred             HHHHHHHHhhC
Q 031170          123 KEEFAKYRQLS  133 (164)
Q Consensus       123 ~~~l~~~~~~~  133 (164)
                      ...|.......
T Consensus       270 ~~ll~~L~~~~  280 (301)
T TIGR03362       270 QQLYAALDQQI  280 (301)
T ss_pred             HHHHHHHHHHH
Confidence            99988876553

This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=90.40  E-value=6.7  Score=30.12  Aligned_cols=51  Identities=10%  Similarity=-0.013  Sum_probs=23.0

Q ss_pred             HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           41 RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        41 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      .+|++..|-..|+-.+...|+      .+......-..++..++-..|...|+.++.
T Consensus       444 ~~~d~~ta~~ifelGl~~f~d------~~~y~~kyl~fLi~inde~naraLFetsv~  494 (660)
T COG5107         444 ATGDRATAYNIFELGLLKFPD------STLYKEKYLLFLIRINDEENARALFETSVE  494 (660)
T ss_pred             hcCCcchHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence            344555555555555555554      222222333334444555555555554443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.21  E-value=7.5  Score=30.35  Aligned_cols=56  Identities=11%  Similarity=-0.044  Sum_probs=33.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA   59 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   59 (164)
                      +++|.+. ..++-..+++++...+-++...-..++..|.+ ++-.++..+|.+++...
T Consensus       106 ~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf  161 (711)
T COG1747         106 LQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRF  161 (711)
T ss_pred             HHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh
Confidence            3444444 34555556666666655555555566655554 66777777777777654

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.92  E-value=5.5  Score=28.41  Aligned_cols=136  Identities=13%  Similarity=0.057  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170           12 QDARNVFEEILAGNPLSFEALFENALLMDRC--GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL   89 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   89 (164)
                      +.-.++...+++.+|.+-++|...-.++...  .++.--....++.++.++.+..-..-....+.-+.-.+...++..-.
T Consensus        91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~  170 (328)
T COG5536          91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL  170 (328)
T ss_pred             hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence            3446778889999999999998877776654  56777788889999999884321110111111122234445566667


Q ss_pred             HHHHHHHHhCCCCchhhhhH---HHHHHhcCC------HHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170           90 KSYQELEIEDPNDFRPYFCK---GMIYSLLDR------NAEAKEEFAKYRQLSPKKFEVEGYLRTPL  147 (164)
Q Consensus        90 ~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~------~~~A~~~l~~~~~~~p~~~~~~~~~~~~~  147 (164)
                      ++-..++..++.+..+|...   -...++.|+      .++-+++....+-..|++.....++..+.
T Consensus       171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~  237 (328)
T COG5536         171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS  237 (328)
T ss_pred             HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence            88888899999999998776   333333333      45567777788888999966666655443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.83  E-value=1.3  Score=24.76  Aligned_cols=10  Identities=10%  Similarity=0.109  Sum_probs=4.5

Q ss_pred             HHHhCCCCch
Q 031170           95 LEIEDPNDFR  104 (164)
Q Consensus        95 ~~~~~p~~~~  104 (164)
                      ++...|++..
T Consensus        39 ~~~~~pD~~~   48 (75)
T cd02682          39 IVKNYPDSPT   48 (75)
T ss_pred             HHHhCCChHH
Confidence            3334455444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=89.66  E-value=2.6  Score=28.04  Aligned_cols=51  Identities=22%  Similarity=0.294  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+..++..++.+...|+ +..+..++.++...|+.++|...+.++....|.+
T Consensus       127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            44556777788888888 3456677999999999999999999999999954

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.65  E-value=2.9  Score=26.48  Aligned_cols=53  Identities=13%  Similarity=0.020  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170           27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus        27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      +..+.....+.-.+..|++.-|..++..++..+|+      +..+...+++++...|.-
T Consensus        68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~------n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPD------NEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHHHh
Confidence            34566777888889999999999999999999998      677777777777666543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.59  E-value=8.4  Score=30.01  Aligned_cols=128  Identities=15%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHH
Q 031170           12 QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKS   91 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~   91 (164)
                      +.+.+.+.......|+++--....+.++...|+-+.|+..++..+.  +.-...  ..-..+.+|.++.-+.+|..|...
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~--~~l~~fE~aw~~v~~~~~~~aad~  325 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQV--KSLMVFERAWLSVGQHQYSRAADS  325 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4556666667778898888778888888888887778888888887  221111  234455789999999999999999


Q ss_pred             HHHHHHhCCCCchhh--hhHHHHHHh--------cCCHHHHHHHH---HHHHhhCCCcchhhhHhh
Q 031170           92 YQELEIEDPNDFRPY--FCKGMIYSL--------LDRNAEAKEEF---AKYRQLSPKKFEVEGYLR  144 (164)
Q Consensus        92 ~~~~~~~~p~~~~~~--~~~~~~~~~--------~~~~~~A~~~l---~~~~~~~p~~~~~~~~~~  144 (164)
                      +....+. .+...+.  +..|.++.+        .|+-+++-.++   ...+...|.+.+.+.++.
T Consensus       326 ~~~L~de-sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~  390 (546)
T KOG3783|consen  326 FDLLRDE-SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIV  390 (546)
T ss_pred             HHHHHhh-hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHH
Confidence            9887776 3333333  334444444        23444443333   344555666655445543

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=89.45  E-value=1.4  Score=29.24  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=19.1

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           36 ALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        36 a~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      ..++.+.|.+++|.+.+++... +|+
T Consensus       118 V~VCm~~g~Fk~A~eiLkr~~~-d~~  142 (200)
T cd00280         118 VAVCMENGEFKKAEEVLKRLFS-DPE  142 (200)
T ss_pred             HHHHHhcCchHHHHHHHHHHhc-CCC
Confidence            4577888888888888888777 555

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.32  E-value=6.8  Score=31.83  Aligned_cols=66  Identities=17%  Similarity=0.078  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc---------cch-------hhhhhhHHHHHHHHHHHccCHHHHHHHH
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAED---------GNK-------LKEARDVRFIMAQIKFLQKNVDEALKSY   92 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~   92 (164)
                      .+++..+|..+....+|++|.++|.+.-.....         .+.       +..+...+-.+|+++...|.-++|.++|
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence            457888999888888999998888764222100         000       0114556667888888888888888777


Q ss_pred             HH
Q 031170           93 QE   94 (164)
Q Consensus        93 ~~   94 (164)
                      .+
T Consensus       876 Lr  877 (1189)
T KOG2041|consen  876 LR  877 (1189)
T ss_pred             Hh
Confidence            55

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.31  E-value=1.4  Score=35.38  Aligned_cols=100  Identities=11%  Similarity=0.103  Sum_probs=72.2

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH--HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHH
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK--FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMI  112 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  112 (164)
                      -++.+++.+++.++.--|..++.+-|.....  ........+.++  ...|+|..++.--.-++...|....+++.++.+
T Consensus        59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~--~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~  136 (748)
T KOG4151|consen   59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV--VATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK  136 (748)
T ss_pred             hhhHHhhhhhhhccchhhhhhheeccccchh--hhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence            3466777788888877777777777743221  122222334443  456788888888888888888888888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          113 YSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       113 ~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |...+..+-|++.+.-.....|.+
T Consensus       137 y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  137 YEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCc
Confidence            888888888888877777888887

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=89.08  E-value=3.9  Score=25.46  Aligned_cols=48  Identities=15%  Similarity=0.072  Sum_probs=37.6

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLE   53 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~   53 (164)
                      +...+.+...+.+++.++..++.++..+..+..++.+.+ ..+.+..+.
T Consensus        17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~   64 (140)
T smart00299       17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD   64 (140)
T ss_pred             HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence            344578899999999999998888888888888887653 456666666

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=89.04  E-value=2.8  Score=33.56  Aligned_cols=53  Identities=15%  Similarity=0.140  Sum_probs=32.7

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH-------------HHHHhcCCHHHHHHHHHHHHh
Q 031170           76 AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG-------------MIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~-------------~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      .+++...++|++|....++-.+.-|+   .++..|             .++.+.|+-.+|.+.+++...
T Consensus       780 VqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  780 VQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence            45667788999998877764433222   222223             345557777777777776643

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=88.86  E-value=0.53  Score=34.30  Aligned_cols=70  Identities=23%  Similarity=0.120  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY  106 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  106 (164)
                      ....++.+-+..+.+..|+..-..++..+++      ...+++..+..+....++++|++.+..+....|++....
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s------~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~  346 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERS------KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE  346 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChh------hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence            3444667777777777777777777776555      567777778888888888888888888887778776543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=88.80  E-value=1.3  Score=19.65  Aligned_cols=27  Identities=19%  Similarity=0.100  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEI   58 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~   58 (164)
                      |..+...+.+.|++++|...|.+..+.
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~   29 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLER   29 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            444556667777777777777666543

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=88.11  E-value=2.9  Score=25.87  Aligned_cols=57  Identities=7%  Similarity=-0.035  Sum_probs=34.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------chhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEIEDPND---------------FRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      ..+|+..++.+++-.++-+|++++....+-               .-.-.+++..+..+|+.+-.+.+++-+
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA   76 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA   76 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence            456666667777777777777666542210               111245666777788888777777644

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=86.95  E-value=2  Score=30.34  Aligned_cols=99  Identities=21%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHH-----------HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHH
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEA-----------LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVR   72 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   72 (164)
                      .+.-.++.=.|+-.+...+...|.+..+           ++....+ ...-....|.+++.+|+-.....++.....-+.
T Consensus         4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~-~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~   82 (368)
T COG5091           4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDW-HSDATMENAKELLDKALMTAEGRGDRSKIGLVN   82 (368)
T ss_pred             chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhh-hcccChhhHHHHHHHHHHhhhccCCcceeeeeh
Confidence            4445566667888888888888887433           2222222 223356789999999998876655544445566


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      ...+..|+...+|+.|..||..+.....++.
T Consensus        83 ~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~  113 (368)
T COG5091          83 FRYFVHFFNIKDYELAQSYFKKAKNLYVDDT  113 (368)
T ss_pred             hhhHHHhhhHHHHHHHHHHHHHHHHHhhccc
Confidence            6788889999999999999999998865543

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.88  E-value=11  Score=28.45  Aligned_cols=99  Identities=14%  Similarity=0.139  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN--------  101 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--------  101 (164)
                      .++..+|.-|...|+.+.|+..|.++-....+.+.   ....+..+-.+-+-.|+|..-..+..++... |.        
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q~  226 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISKAEST-PDANENLAQE  226 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHHh
Confidence            35677888999999999999999997666654322   2455666677778889999888888777654 31        


Q ss_pred             -CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170          102 -DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       102 -~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                       .+.+....|.+....+++..|..++-.+..-
T Consensus       227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~  258 (466)
T KOG0686|consen  227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAEFD  258 (466)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence             2234455677777788899988887766433

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=85.85  E-value=13  Score=28.11  Aligned_cols=135  Identities=16%  Similarity=0.028  Sum_probs=75.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC-H-----HHHHHHHHHHHHcCCc-------HHHHHHHHHHHhhcccc----c
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS-F-----EALFENALLMDRCGEG-------EAVIKRLEEALEIAEDG----N   63 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~-~-----~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~~~----~   63 (164)
                      ||...+..|+|+-|...|+-+.+-..++ .     .+....|.+.+..+..       ++...+++.|+...-..    .
T Consensus       214 LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~  293 (414)
T PF12739_consen  214 LADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRC  293 (414)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcccc
Confidence            4778899999999999999888765433 1     1233445555555533       35556666655543320    0


Q ss_pred             hh-hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCc-----hh-----------------------------h
Q 031170           64 KL-KEARDVRFIMAQIKFLQKNVDEALKSYQELEIE--DPNDF-----RP-----------------------------Y  106 (164)
Q Consensus        64 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~-----~~-----------------------------~  106 (164)
                      .. .-..+..+..+.++...+.+.+|...+-+....  ...-.     -.                             +
T Consensus       294 ~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~~  373 (414)
T PF12739_consen  294 SLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKYAFHM  373 (414)
T ss_pred             ccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHHHHHH
Confidence            00 002344555666677777766655544333322  10100     00                             1


Q ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170          107 FCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus       107 ~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ...|.-+...|+...|.++|.++......
T Consensus       374 vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  374 VLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            22344555577778888888887766543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=85.64  E-value=6.5  Score=24.36  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----------hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGN----------KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      +.+..+-.++...|+.+....++++...++.+..          ...+....+..+...+...|++..|+++.....+..
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            4455666677788888888888888777764331          122345677778888888899999999988888877


Q ss_pred             CCC
Q 031170          100 PND  102 (164)
Q Consensus       100 p~~  102 (164)
                      |-.
T Consensus        83 ~I~   85 (126)
T PF12921_consen   83 PIP   85 (126)
T ss_pred             CCC
Confidence            643

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.58  E-value=12  Score=27.38  Aligned_cols=99  Identities=8%  Similarity=0.079  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhcc--ccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCchhh
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAE--DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELE--IEDPNDFRPY  106 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~~  106 (164)
                      ....+|.+|.+.++|..|-..+.- +..+.  ...+..-....+..+|++|...++..+|..+..++.  ..+..+....
T Consensus       105 irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq  183 (399)
T KOG1497|consen  105 IRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ  183 (399)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence            456799999999999998776643 33322  111111134556689999999999999999887753  2233444333


Q ss_pred             h----hHHHHHHhcCCHHHHHHHHHHHH
Q 031170          107 F----CKGMIYSLLDRNAEAKEEFAKYR  130 (164)
Q Consensus       107 ~----~~~~~~~~~~~~~~A~~~l~~~~  130 (164)
                      .    ..+.++...+++-+|-..|.+..
T Consensus       184 ie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  184 IEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2    23455555777766655555443

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=85.25  E-value=5.8  Score=23.75  Aligned_cols=50  Identities=10%  Similarity=-0.002  Sum_probs=33.1

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  118 (164)
                      .......|.+.+..|||..|.+...++.+..+...-.++..+..-..+||
T Consensus        59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd  108 (108)
T PF07219_consen   59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD  108 (108)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            34445668888888999999999888877644444445555555544543

These are membrane protein involved in a late step of protoheme IX synthesis [].

>PF13041 PPR_2: PPR repeat family

Probab=85.22  E-value=3.3  Score=20.61  Aligned_cols=30  Identities=17%  Similarity=0.093  Sum_probs=21.4

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ...+..+-..+.+.|++++|.+.|++..+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            344556667777888888888888877754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.06  E-value=11  Score=31.11  Aligned_cols=54  Identities=11%  Similarity=-0.045  Sum_probs=34.3

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLS-FEALFENALLMDRCGEGEAVIKRLEEALEIA   59 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   59 (164)
                      +.+..-|+-|+..-+.- ..+++. ...+...|.-++.+|++++|...|-+.+..-
T Consensus       344 L~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  344 LFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             HHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            34445566666554332 222222 3356677888889999999998888877743

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.77  E-value=2.2  Score=23.84  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=14.2

Q ss_pred             HHcCCcHHHHHHHHHHHhhcc
Q 031170           40 DRCGEGEAVIKRLEEALEIAE   60 (164)
Q Consensus        40 ~~~~~~~~A~~~~~~a~~~~~   60 (164)
                      -..|+|++|+.+|..+++..-
T Consensus        17 D~~gny~eA~~lY~~ale~~~   37 (75)
T cd02680          17 DEKGNAEEAIELYTEAVELCI   37 (75)
T ss_pred             hHhhhHHHHHHHHHHHHHHHH
Confidence            355777777777777776543

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.71  E-value=4.1  Score=22.75  Aligned_cols=26  Identities=19%  Similarity=0.130  Sum_probs=15.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ...|.-+-..|++.+|+.+|+.++..
T Consensus        10 a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682          10 AINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            34455555667777777777666553

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]

Probab=84.34  E-value=14  Score=27.11  Aligned_cols=81  Identities=20%  Similarity=0.178  Sum_probs=52.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHH
Q 031170           15 RNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE   94 (164)
Q Consensus        15 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~   94 (164)
                      ++.+.+-....|+..++.+..+....+.|+|..|..++-......++...- .-...|-.+| .-+-..+|+.|++-+.+
T Consensus       115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n-~lsalwGKlA-SEIL~qnWd~A~edL~r  192 (432)
T KOG2758|consen  115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRN-YLSALWGKLA-SEILTQNWDGALEDLTR  192 (432)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchh-hHHHHHHHHH-HHHHHhhHHHHHHHHHH
Confidence            444444455567788899999999999999999988875555544332110 0122333333 23456689999988877


Q ss_pred             HHH
Q 031170           95 LEI   97 (164)
Q Consensus        95 ~~~   97 (164)
                      .-+
T Consensus       193 Lre  195 (432)
T KOG2758|consen  193 LRE  195 (432)
T ss_pred             HHH
Confidence            543

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=84.33  E-value=7.6  Score=24.07  Aligned_cols=19  Identities=21%  Similarity=0.055  Sum_probs=9.2

Q ss_pred             HHHHHHHHccCHHHHHHHH
Q 031170           74 IMAQIKFLQKNVDEALKSY   92 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~   92 (164)
                      ..|..+...|++.+|.+.|
T Consensus       104 ~~A~~lE~~g~~~~A~~iy  122 (125)
T smart00777      104 EWAQLLEAAGRYKKADEVY  122 (125)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            4444444555555554444

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=84.30  E-value=14  Score=27.17  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=63.6

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH---h----CCCCchhhhhH
Q 031170           37 LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI---E----DPNDFRPYFCK  109 (164)
Q Consensus        37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~----~p~~~~~~~~~  109 (164)
                      .+..+.++.++|++++++.+..-.....+.+.......+|.++...||.+++.+.+...-.   .    .|+-...++.+
T Consensus        83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l  162 (380)
T KOG2908|consen   83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL  162 (380)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence            3556677899999999998886543333222344555889999999999999888876544   1    12222334444


Q ss_pred             HH-HHHhcCCHHHHHHHHHHHHhhC
Q 031170          110 GM-IYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       110 ~~-~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      +. .|...|++...-...-+.+...
T Consensus       163 ssqYyk~~~d~a~yYr~~L~YL~~~  187 (380)
T KOG2908|consen  163 SSQYYKKIGDFASYYRHALLYLGCS  187 (380)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhccc
Confidence            44 4555788877776666665554

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.55  E-value=20  Score=28.40  Aligned_cols=128  Identities=13%  Similarity=0.110  Sum_probs=79.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhc-----CC----------------CCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAG-----NP----------------LSFE---ALFENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~-----~p----------------~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      |.++..+|+.+-|.+..++++=.     +|                .+-.   +++..-..+.+.|-+..|.++++-.++
T Consensus       291 a~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls  370 (665)
T KOG2422|consen  291 ADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS  370 (665)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence            56677889998888888777531     22                2222   233344566789999999999999999


Q ss_pred             hccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH-----HHhCCCCchhhhhHHHHHHh--cCC---HHHHHHHHH
Q 031170           58 IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL-----EIEDPNDFRPYFCKGMIYSL--LDR---NAEAKEEFA  127 (164)
Q Consensus        58 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-----~~~~p~~~~~~~~~~~~~~~--~~~---~~~A~~~l~  127 (164)
                      ++|..+    ...+.+.+-...++..+|+=-|.+++..     +...|+..   |.++.+++.  ...   .+.|...+.
T Consensus       371 Ldp~eD----Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~---yS~AlA~f~l~~~~~~~rqsa~~~l~  443 (665)
T KOG2422|consen  371 LDPSED----PLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG---YSLALARFFLRKNEEDDRQSALNALL  443 (665)
T ss_pred             cCCcCC----chhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch---HHHHHHHHHHhcCChhhHHHHHHHHH
Confidence            999743    1222223333334555666555555554     33345543   244444333  332   567889999


Q ss_pred             HHHhhCCCc
Q 031170          128 KYRQLSPKK  136 (164)
Q Consensus       128 ~~~~~~p~~  136 (164)
                      +|+...|.-
T Consensus       444 qAl~~~P~v  452 (665)
T KOG2422|consen  444 QALKHHPLV  452 (665)
T ss_pred             HHHHhCcHH
Confidence            999999954

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=83.20  E-value=3.3  Score=18.95  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=16.6

Q ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHH
Q 031170           10 KTQDARNVFEEILAGNPLSFEALFENA   36 (164)
Q Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~la   36 (164)
                      +++.|..+|++.+...|+ +..|...|
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyA   27 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYA   27 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence            466777777777777764 45555444

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=82.97  E-value=3  Score=18.43  Aligned_cols=26  Identities=15%  Similarity=0.199  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      |..+..++.+.|+++.|...+....+
T Consensus         4 y~~ll~a~~~~g~~~~a~~~~~~M~~   29 (34)
T PF13812_consen    4 YNALLRACAKAGDPDAALQLFDEMKE   29 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45556667777777777777766554

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=82.66  E-value=9.9  Score=24.10  Aligned_cols=120  Identities=17%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCC------------------HHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhcccc
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLS------------------FEALFENALLM--DRCGEGEAVIKRLEEALEIAEDG   62 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------------------~~~~~~la~~~--~~~~~~~~A~~~~~~a~~~~~~~   62 (164)
                      .-+...|..++..+...+.....+-.                  ...+-.+|.++  ...|.....+.++-+.   +.  
T Consensus        10 K~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~---n~--   84 (161)
T PF09205_consen   10 KERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR---NK--   84 (161)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT---T---
T ss_pred             HHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh---cc--
Confidence            33556778888888888887765521                  11122233222  2334444444444332   11  


Q ss_pred             chhhhhhhHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           63 NKLKEARDVRFIM-AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        63 ~~~~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                            ..-++.+ -.....+|.-++--+.+....+....+++.++.+|.+|...|+..++-+.+.+|-..-
T Consensus        85 ------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   85 ------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             --------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             ------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence                  1122222 2345677788888888888887788889999999999999999999999999886543

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=82.60  E-value=24  Score=28.54  Aligned_cols=121  Identities=7%  Similarity=-0.114  Sum_probs=82.3

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---------------h---hh
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---------------L---KE   67 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~---~~   67 (164)
                      ...++++.+...+..+-..........+-+|..+...|+.++|...|+++.... +...               .   ..
T Consensus       323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~-~fYG~LAa~~Lg~~~~~~~~~~~~~  401 (644)
T PRK11619        323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQR-GFYPMVAAQRLGEEYPLKIDKAPKP  401 (644)
T ss_pred             HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC-CcHHHHHHHHcCCCCCCCCCCCCch
Confidence            456777777777777655444566778888888888999999999998875421 1100               0   00


Q ss_pred             ----hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           68 ----ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        68 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                          .....+..+..++..|....|...+..++..  .+......++.+....|.++.++....+.
T Consensus       402 ~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~  465 (644)
T PRK11619        402 DSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG  465 (644)
T ss_pred             hhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence                0112345567778889999999988887775  23455667777777888888888766544

>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I

Probab=82.41  E-value=13  Score=25.17  Aligned_cols=57  Identities=16%  Similarity=0.164  Sum_probs=40.4

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCcHHHHHHHHHHHhhccc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENA-LLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      ....|+++.|-+.|--++...+=+....-.+| .++...+.-....++++......|.
T Consensus        51 ~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~  108 (199)
T PF04090_consen   51 CLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPS  108 (199)
T ss_pred             HHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHH
Confidence            45678899999999888887766666655666 5777776666665777776666553

Binding to the DNA template is dependent on the initial binding of other factors [].

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.40  E-value=20  Score=27.48  Aligned_cols=97  Identities=15%  Similarity=0.022  Sum_probs=56.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCCcH---HHHHHHHH---HHhhccccc-
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGN-----------PLSFEALFENALLMDRCGEGE---AVIKRLEE---ALEIAEDGN-   63 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~-----------p~~~~~~~~la~~~~~~~~~~---~A~~~~~~---a~~~~~~~~-   63 (164)
                      |++.+....|++|+.++-.+-+..           -+.+-.-..+.+||+...+..   .|..-+..   .+...-... 
T Consensus       170 aRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl  249 (568)
T KOG2561|consen  170 ARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENL  249 (568)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhh
Confidence            566777788888888776654332           122333345778888777543   34333322   222221111 


Q ss_pred             --------hhhh----hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           64 --------KLKE----ARDVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        64 --------~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                              ...+    ..+.++.-|.+.+.+|.-++|.++++.+...
T Consensus       250 ~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~  296 (568)
T KOG2561|consen  250 SRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK  296 (568)
T ss_pred             HhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                    0000    2334445689999999999999999887543

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=82.26  E-value=22  Score=28.27  Aligned_cols=57  Identities=9%  Similarity=-0.004  Sum_probs=33.1

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFA  127 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~  127 (164)
                      ....+..|..+-..+..++|-.+|+..+..+|+  ..++..+.-+...|-...|...++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   98 (578)
T PRK15490         42 SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK   98 (578)
T ss_pred             HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence            344445566666666667777777776666665  444444555555555555555555

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.18  E-value=18  Score=28.98  Aligned_cols=31  Identities=13%  Similarity=-0.184  Sum_probs=17.1

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170           27 LSFEALFENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus        27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      +++.-|..||.+....+++..|.++|.++..
T Consensus       664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  664 NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            3444555555555555555555555555533

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=82.11  E-value=6.1  Score=24.35  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=12.7

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      +|..+...|++++|..+|-+|+..+|.
T Consensus        69 lGE~L~~~G~~~~aa~hf~nAl~V~~q   95 (121)
T PF02064_consen   69 LGEQLLAQGDYEEAAEHFYNALKVCPQ   95 (121)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            444444445555555555555555444

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=81.69  E-value=18  Score=26.55  Aligned_cols=107  Identities=15%  Similarity=0.088  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc---hh
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF---RP  105 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~  105 (164)
                      .+++...|..|.+.|+-+.|.+.+.+..+..-.-+..-...-....+|..|....=..+.++-....++..-+..   ..
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl  183 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL  183 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence            568889999999999999999888877765443222211223333566666655555555555555555533321   12


Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170          106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus       106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      -...|...+..-++.+|-..|-..+.....
T Consensus       184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence            234455555567788888877777665433

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.85  E-value=13  Score=29.01  Aligned_cols=59  Identities=17%  Similarity=0.039  Sum_probs=26.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHH---Hh---CCC-CchhhhhHHHHHHhcCC-HHHHHHHHHHHHhhC
Q 031170           75 MAQIKFLQKNVDEALKSYQELE---IE---DPN-DFRPYFCKGMIYSLLDR-NAEAKEEFAKYRQLS  133 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~---~~---~p~-~~~~~~~~~~~~~~~~~-~~~A~~~l~~~~~~~  133 (164)
                      +|.+.-..|+...|..+|..++   ..   ++- -+.+++-+|..+..+|. ..++..++.+|....
T Consensus       455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  455 KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            3444444445555555554443   11   111 13344555555555444 555555555554443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.67  E-value=23  Score=29.39  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAG   24 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~   24 (164)
                      |..++..|++++|...|-+.|..
T Consensus       375 gd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  375 GDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHhcCCHHHHHHHHHHHccc
Confidence            45578899999999999998874

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.40  E-value=8.1  Score=21.64  Aligned_cols=14  Identities=43%  Similarity=0.477  Sum_probs=5.8

Q ss_pred             ccCHHHHHHHHHHH
Q 031170           82 QKNVDEALKSYQEL   95 (164)
Q Consensus        82 ~~~~~~A~~~~~~~   95 (164)
                      .|++++|+.+|.++
T Consensus        19 ~g~y~eAl~~Y~~a   32 (77)
T cd02683          19 EGRFQEALVCYQEG   32 (77)
T ss_pred             hccHHHHHHHHHHH
Confidence            34444444444433

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=80.32  E-value=21  Score=28.64  Aligned_cols=27  Identities=15%  Similarity=0.055  Sum_probs=15.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          109 KGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ...-+...|++++|++.+.+. .+-|.+
T Consensus       511 ~ff~~~~~g~~~~AL~~i~~L-~liP~~  537 (613)
T PF04097_consen  511 EFFDLYHAGQYEQALDIIEKL-DLIPLD  537 (613)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHT-T-S-S-
T ss_pred             HHHHHHHcCCHHHHHHHHHhC-CCCCCC
Confidence            344455588888888888776 466654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.17  E-value=22  Score=30.74  Aligned_cols=113  Identities=14%  Similarity=0.055  Sum_probs=69.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC-------------------------HH----HHHHHHHHHHHcCCcHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS-------------------------FE----ALFENALLMDRCGEGEAVIKR   51 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~-------------------------~~----~~~~la~~~~~~~~~~~A~~~   51 (164)
                      +|.+|...|+.-+|+..|.++.......                         +.    .+.....++.+.+..+++++.
T Consensus       926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen  926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred             hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            4677888999999999999987643221                         11    122333566666777778888


Q ss_pred             HHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc---hhhhhHHHHHHhcCCH
Q 031170           52 LEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF---RPYFCKGMIYSLLDRN  119 (164)
Q Consensus        52 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~  119 (164)
                      .-+|++.-|+....  .+.....+-+-+...|.|-+|.+.+    -.+|+..   ..+..+..++++.|.+
T Consensus      1006 A~~AIe~l~dd~ps--~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1006 AVKAIENLPDDNPS--VALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred             HHHHHHhCCCcchh--HHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccch
Confidence            88888876653321  2233335555667788888886543    3345532   2344566666665554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=80.09  E-value=9.6  Score=31.00  Aligned_cols=98  Identities=17%  Similarity=0.064  Sum_probs=74.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC----HHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS----FEALFENALLM--DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      +..+++.+++..|---|...+..-|.+    .......+.++  ...++|..++.-..-++...|.      ...+++..
T Consensus        60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~------i~~~Ll~r  133 (748)
T KOG4151|consen   60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR------ISKALLKR  133 (748)
T ss_pred             hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch------HHHHHhhh
Confidence            345677788888877788888877743    22334455444  4566888999999999999888      77888888


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           76 AQIKFLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      +.+|...+..+-|++...-.....|....+
T Consensus       134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~  163 (748)
T KOG4151|consen  134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSA  163 (748)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence            999999999999999877777888887543

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=80.02  E-value=22  Score=26.36  Aligned_cols=96  Identities=19%  Similarity=0.056  Sum_probs=62.5

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------
Q 031170           33 FENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP------------  100 (164)
Q Consensus        33 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------  100 (164)
                      +.+-+..-+..+..+-++....++.++|.      +..++..++.--.  .-..+|.+.++++++...            
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~e------CA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~  259 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNE------CATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQ  259 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCch------hhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            34444445556677778888889999988      7888777765221  124455555555544211            


Q ss_pred             ---------CCchh----hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          101 ---------NDFRP----YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       101 ---------~~~~~----~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                               .+...    -..++.+-.++|+..+|+..++...+..|--
T Consensus       260 ~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~  308 (556)
T KOG3807|consen  260 SPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL  308 (556)
T ss_pred             ccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH
Confidence                     11111    2357888888999999999999988877754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-04

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 1/136 (0%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +     ++G    A    +   A        L E  ++     + +  I   + AL + +
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506

Query: 61  DGNKLKEAR-DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN 119
                ++        +       K  D A+ +  +  +   ND   +    ++Y      
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566

Query: 120 AEAKEEFAKYRQLSPK 135
             A     +   +SP 
Sbjct: 567 GLAITHLHESLAISPN 582

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 30/164 (18%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
            A  L    +  D   +  +IL  +P + +    +   +   GE   +     + ++   
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370

Query: 61  D--------GN------KLKEAR---------DVRFIMAQIKF-----LQKNVDEALKSY 92
           +        G       K+ EAR         D +F  A I F     ++   D+A+ +Y
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430

Query: 93  QE-LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135
                +       PY   GM +  L     A E       L   
Sbjct: 431 TTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 5/140 (3%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFE-NALLMDRCGEGEAVIKRLEEALEIA 59
             ++ + +     A+  ++E L  +   +EA  +  +  +    E   ++ +L  +    
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 60  EDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN 119
           ED   L+      +++   K   ++     + Y               CK     +  R 
Sbjct: 266 EDAAFLRSL----YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321

Query: 120 AEAKEEFAKYRQLSPKKFEV 139
            +      K  ++ P   +V
Sbjct: 322 IDVLAITTKILEIDPYNLDV 341

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 6/111 (5%)

Query: 18  FEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77
           +   + G   S + L   A  +        V+    + LEI           DV  +   
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY------NLDVYPLHLA 347

Query: 78  IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAK 128
                   ++      +L    P     +   G+ Y  +++ +EA+  F+K
Sbjct: 348 SLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 17/148 (11%), Positives = 42/148 (28%), Gaps = 17/148 (11%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
            A   +  G+   A + +         +        +   + G      + L+ +  + +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 61  DGNKLKEARDVRFI--MAQIKFLQKNVDEALKSYQE-LEI------EDPNDFRPYFCKGM 111
                    D   +  +  + F + ++  A+  +Q  L +       +      +   G 
Sbjct: 473 Y--------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524

Query: 112 IYSLLDRNAEAKEEFAKYRQLSPKKFEV 139
            Y  L     A +   +   LS     V
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 12  QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDV 71
              R+     LA   L     ++ AL  +  GE     K  + A ++      +K    +
Sbjct: 145 LYNRSSACRYLAAFCLVKLYDWQGAL--NLLGETNPFRKDEKNANKLLMQDGGIKLEASM 202

Query: 72  RFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR 130
            ++  Q+     N D A + Y+E L + D   +  +      + L             Y 
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKEALMV-DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYS 261

Query: 131 QLSPKKFE 138
             S +   
Sbjct: 262 TYSKEDAA 269

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 3/138 (2%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +         ++ A   F + L+  P     + E  ++  + GE +   K   +ALE  +
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 61  DGNKLKEARD---VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD 117
                        +   +  +    K   EAL  +++  +  P +   Y   G I+SL+ 
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284

Query: 118 RNAEAKEEFAKYRQLSPK 135
               A + F     L   
Sbjct: 285 NFENAVDYFHTALGLRRD 302

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 31/165 (18%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A         +    +   ++  +P     L  +   +    +   +     + +++  
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP 87

Query: 61  D---------------GNKLKEAR---------DVRFIMAQIKF-----LQKNVDEALKS 91
                           G+K + AR         +  +  A I +     ++   D+A+ +
Sbjct: 88  SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147

Query: 92  YQE-LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135
           Y    ++       P    G+ Y L + +  A+  F++   ++P+
Sbjct: 148 YFTAAQL-MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 17/132 (12%), Positives = 38/132 (28%), Gaps = 17/132 (12%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSF---------EALFENALLMDRCGEGEAVIKR 51
           +  +  + G+ + A   F + L                  L     +  +  +    +  
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 52  LEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKG 110
             +AL +         A      +  I  L  N + A+  +   L +   +D       G
Sbjct: 259 HRQALVLIPQ-----NA-STYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLG 311

Query: 111 MIYSLLDRNAEA 122
               +   ++EA
Sbjct: 312 HCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 15/86 (17%), Positives = 25/86 (29%)

Query: 53  EEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMI 112
                I E  + L+E  DV   +A+  +   +     K    +  +DP            
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 113 YSLLDRNAEAKEEFAKYRQLSPKKFE 138
              L++  E      K   L P    
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPV 91

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A    + G  + A     ++    P +   L   + +  +C   +        A++   
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
                    +    +  +   +  + EA++ Y+  L +  P+    Y             
Sbjct: 65  L------LAEAYSNLGNVYKERGQLQEAIEHYRHALRL-KPDFIDGYINLAAALVAAGDM 117

Query: 120 AEAKEEFAKYRQLSPKKFEV 139
             A + +    Q +P  + V
Sbjct: 118 EGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 24/144 (16%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +  LL  +G+ ++A+  + + +   P    A      + +  GE    I   E+A+ +  
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 61  D--------GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGM 111
           +        GN LKE               +  D A+ +Y   L +  PN    +     
Sbjct: 201 NFLDAYINLGNVLKE--------------ARIFDRAVAAYLRALSL-SPNHAVVHGNLAC 245

Query: 112 IYSLLDRNAEAKEEFAKYRQLSPK 135
           +Y        A + + +  +L P 
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPH 269

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A +  E G    A + +   +   P   +A    A  +   G           AL +  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
                    D    +A IK  Q N++EA++ Y++ LE+  P     +     +     + 
Sbjct: 303 T------HADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKL 355

Query: 120 AEAKEEFAKYRQLSPK 135
            EA   + +  ++SP 
Sbjct: 356 QEALMHYKEAIRISPT 371

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 8/136 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A  L   G  + A   +   L  NP  +    +   L+   G  E       +A+E   
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
           +      A      +  +   Q  +  A+  +++ + + DPN    Y   G +       
Sbjct: 167 N---FAVA---WSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIF 219

Query: 120 AEAKEEFAKYRQLSPK 135
             A   + +   LSP 
Sbjct: 220 DRAVAAYLRALSLSPN 235

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A  L E G   +A + +   L   P   ++L   A +    G  E  ++   +ALE+  
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLL 116
           +             +A +   Q  + EAL  Y+E + I  P     Y   G     +
Sbjct: 337 E------FAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEM 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 21/150 (14%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEA---------------LFENALLMDRCGEG 45
              LL + GK  +A + F+++L  NP   E                L   AL     G+ 
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 46  EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105
            A I  L++ LE+     +L+E R      A+    +    +A+   +       ++   
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELR------AECFIKEGEPRKAISDLKAASKLKNDNTEA 213

Query: 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135
           ++    +Y  L  +  +  E  +  +L   
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQD 243

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 19/162 (11%), Positives = 57/162 (35%), Gaps = 12/162 (7%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEA---LFENALLMDRCGEGEAVIK--RLEEA 55
           ++ L  ++G  + + +   E L  +           +   L       E +I+  R  +A
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276

Query: 56  LE-----IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCK 109
                  +  + +  +     +  +       +   EA++   E L++ +P++      +
Sbjct: 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDR 335

Query: 110 GMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMK 151
              Y + +   EA +++   ++ +    ++   L      +K
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 16/144 (11%), Positives = 42/144 (29%), Gaps = 9/144 (6%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEI-- 58
            A +   MGK++ A     +++        A  +   L+ + G+ +      ++ L+   
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 59  --AEDGNKLKEARDVRFI-----MAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111
              E+     +      +      A   F   +   A+    ++      D      +  
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185

Query: 112 IYSLLDRNAEAKEEFAKYRQLSPK 135
            +       +A  +     +L   
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKND 209

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 21/150 (14%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEA---------------LFENALLMDRCGEG 45
              LL + GK  +A + F+++L  NP   E                L   AL      + 
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 46  EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105
            A I  L++ LE+           ++R + A+    +    +A+   +       ++   
Sbjct: 137 TAAITFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190

Query: 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135
           ++    +Y  L  +  +  E  +  +L   
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQD 220

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 17/150 (11%), Positives = 54/150 (36%), Gaps = 12/150 (8%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEA---LFENALLMDRCGEGEAVIK--RLEEA 55
           ++ L  ++G  + + +   E L  +           +   L       E +I+  R  +A
Sbjct: 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253

Query: 56  LE-----IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCK 109
                  +  + +  +     +  +       +   EA++   E L++ +P++      +
Sbjct: 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDR 312

Query: 110 GMIYSLLDRNAEAKEEFAKYRQLSPKKFEV 139
              Y + +   EA +++   ++ +    ++
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 9/140 (6%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                        A    ++ +   P    +    AL+M    +        ++AL++  
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLD- 300

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
                     V +   Q+ F+ +N D+A K + +  E+ DP +  PY     +    ++ 
Sbjct: 301 -----SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLACLAYRENKF 354

Query: 120 AEAKEEFAKYRQLSPKKFEV 139
            + +  F++ ++  P+  EV
Sbjct: 355 DDCETLFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 7   EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK 66
                ++  +   E          +L    +      +     + +++A+E+    N   
Sbjct: 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY- 273

Query: 67  EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEF 126
                   MA I   + +  E    + +    D N+   Y+ +G +  +L    +A ++F
Sbjct: 274 ------IYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327

Query: 127 AKYRQLSPKKFE 138
            K ++L P+   
Sbjct: 328 DKAKELDPENIF 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 15/148 (10%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A L     K  D   +F E     P + E     A ++    + +  +K+ + A+E+  
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 61  D--------GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGM 111
                       + +A      +       +N  EA    ++  ++ DP   +       
Sbjct: 404 KLDGIYVGIAPLVGKAT-----LLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQ 457

Query: 112 IYSLLDRNAEAKEEFAKYRQLSPKKFEV 139
           +    +   EA   F +   L+    E 
Sbjct: 458 MKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 16/135 (11%), Positives = 48/135 (35%), Gaps = 6/135 (4%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           MA ++++   + +  N F++ L  +  +    +    +       +   K  ++A E+  
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           +             +A + + +   D+    + E + + P           I +  +   
Sbjct: 336 E------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389

Query: 121 EAKEEFAKYRQLSPK 135
           +A +++    +L  K
Sbjct: 390 KALKQYDLAIELENK 404

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A    +      A   ++E+L   P + + L   A +    G+ +  ++  E+ L++  
Sbjct: 60  LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119

Query: 61  DGNKLKEARDVRFIMAQIKFLQ-KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN 119
           D             +    +L  +   + L++  +            +  G+      R 
Sbjct: 120 D------NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY 173

Query: 120 AEAKEEFAKYRQLSPK 135
            +A+    K     P 
Sbjct: 174 EKARNSLQKVILRFPS 189

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 10/122 (8%)

Query: 28  SFEALFENALLMDRCGEGEAVIKRLEEALEIAED----------GNKLKEARDVRFIMAQ 77
           S + + +        G+    +    + + +  D              + +  +   +A 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 78  IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137
                +N D+A   Y+EL  + PN+         +     +  +A   + K  QL     
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 138 EV 139
             
Sbjct: 123 AA 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 12/150 (8%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A LL + GK  ++   F E     P   E     A ++   G+ +  IK+ + A  + E
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 61  D--------GNKLKEARDVR--FIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCK 109
                    G  + +A  +         +  ++  + A+K   +  E+ DP   +     
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGL 468

Query: 110 GMIYSLLDRNAEAKEEFAKYRQLSPKKFEV 139
             +   +++  EA E F     L+    E 
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEK 498

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 9/140 (6%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                       DA+ + +E +  +P +  +    AL +      +   K  ++A+++  
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
           +           +   Q+ F+ ++   A + +Q+   + +P +  PY     +     + 
Sbjct: 308 E------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-NPENVYPYIQLACLLYKQGKF 360

Query: 120 AEAKEEFAKYRQLSPKKFEV 139
            E++  F + +   P   EV
Sbjct: 361 TESEAFFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 9/128 (7%)

Query: 2   ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED 61
             L           +           +  AL    +              L+E++ +   
Sbjct: 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275

Query: 62  GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRNA 120
            N           +A     ++N  E  K +Q+ +++ +P     Y+ +G +Y +L    
Sbjct: 276 PNSY-------IFLALTLADKENSQEFFKFFQKAVDL-NPEYPPTYYHRGQMYFILQDYK 327

Query: 121 EAKEEFAK 128
            AKE+F K
Sbjct: 328 NAKEDFQK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 49  IKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYF 107
              + +   ++    +   A           F  KN +EA+K YQ  +E+ DPN+   Y 
Sbjct: 7   EPDIAQLKGLSPS-QRQAYA-VQLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPNEPVFYS 63

Query: 108 CKGMIYSLLDRNAEAKEEFAKYRQLSPK 135
                Y       +  E   K  ++ P 
Sbjct: 64  NISACYISTGDLEKVIEFTTKALEIKPD 91

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 14/125 (11%), Positives = 36/125 (28%), Gaps = 12/125 (9%)

Query: 9   GKTQDARNVFEEILAGNPLS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
           G   +      ++   +P         L                IK  + A+E+      
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-----D 55

Query: 65  LKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRNAEAK 123
             E       ++       ++++ ++   + LEI  P+  +    +      L    +A 
Sbjct: 56  PNEP-VFYSNISACYISTGDLEKVIEFTTKALEI-KPDHSKALLRRASANESLGNFTDAM 113

Query: 124 EEFAK 128
            + + 
Sbjct: 114 FDLSV 118

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 15/138 (10%), Positives = 32/138 (23%), Gaps = 6/138 (4%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                  +   Q    V  +     P    A+  +          +A++  L +A  +  
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           +                 K   + V   L    +     P         G     L+   
Sbjct: 172 EQV------VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 225

Query: 121 EAKEEFAKYRQLSPKKFE 138
                  +   L+P++  
Sbjct: 226 RLLPVLCQAHGLTPQQVV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 14/134 (10%), Positives = 31/134 (23%), Gaps = 6/134 (4%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
              +   Q    V  +     P    A+  +          + ++  L +A  +  +   
Sbjct: 82  KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV- 140

Query: 65  LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE 124
                         K   + V   L    +     P         G     L+       
Sbjct: 141 -----VAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195

Query: 125 EFAKYRQLSPKKFE 138
              +   L+P++  
Sbjct: 196 VLCQAHGLTPQQVV 209

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 14/136 (10%), Positives = 30/136 (22%), Gaps = 8/136 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                  +   Q    V  +     P    A+  +          + ++  L +A  +  
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSY-QELEIEDPNDFRPYFCKGMIYSLLDRN 119
           +                 K   + V   L    Q   +  P               L+  
Sbjct: 376 E------QVVAIASNGGGKQALETVQRLLPVLCQAHGL-TPEQVVAIASHDGGKQALETV 428

Query: 120 AEAKEEFAKYRQLSPK 135
                   +   L+P+
Sbjct: 429 QRLLPVLCQAHGLTPQ 444

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 8/136 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                  +   Q    V  +     P    A+  N          + ++  L +A  +  
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-- 271

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSY-QELEIEDPNDFRPYFCKGMIYSLLDRN 119
                ++        +  K   + V   L    Q   +  P         G     L+  
Sbjct: 272 ---TPQQV-VAIASNSGGKQALETVQRLLPVLCQAHGL-TPQQVVAIASNGGGKQALETV 326

Query: 120 AEAKEEFAKYRQLSPK 135
                   +   L+P+
Sbjct: 327 QRLLPVLCQAHGLTPQ 342

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 15/139 (10%), Positives = 32/139 (23%), Gaps = 8/139 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                  +   Q    V  +     P    A+  N          + ++  L +A  +  
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-- 237

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSY-QELEIEDPNDFRPYFCKGMIYSLLDRN 119
                ++           K   + V   L    Q   +  P               L+  
Sbjct: 238 ---TPQQV-VAIASNGGGKQALETVQRLLPVLCQAHGL-TPQQVVAIASNSGGKQALETV 292

Query: 120 AEAKEEFAKYRQLSPKKFE 138
                   +   L+P++  
Sbjct: 293 QRLLPVLCQAHGLTPQQVV 311

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 9   GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK-E 67
               +A + +   L G PL+     E  + +     G+  ++ ++  L +    + L  +
Sbjct: 47  VTAVEAVHAWRNALTGAPLNLTP--EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104

Query: 68  ARDVRFIMAQIKFLQKNVDEALKSY-QELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEF 126
                      K   + V   L    Q   +  P               L+         
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGL-TPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 127 AKYRQLSPKKFEV 139
            +   L+P++   
Sbjct: 164 CQAHGLTPEQVVA 176

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.8 bits (119), Expect = 7e-08
 Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 8/133 (6%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A     MG T       +  LA +P   EA+     +             L++A + A 
Sbjct: 29  LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
           +         +   +          + A  +Y    ++  P +             L   
Sbjct: 89  E------HPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLLNWRRRLCDW 141

Query: 120 AEAKEEFAKYRQL 132
                  A+ R  
Sbjct: 142 RALDVLSAQVRAA 154

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 8/136 (5%)

Query: 9   GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA 68
                        +   P  F A    A      G+  A    ++  L +          
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------H 56

Query: 69  RDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFA 127
            +    + ++++ Q+   EA    Q+  +   P         G       +   A   + 
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGHALEDAGQAEAAAAAYT 115

Query: 128 KYRQLSPKKFEVEGYL 143
           +  QL P++  +   L
Sbjct: 116 RAHQLLPEEPYITAQL 131

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 6/152 (3%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
               L   G+ + A++        +P          L   +  E +A  + L++  E + 
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQA-KEVLKQHFEKS- 174

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
             +K +   ++          Q  ++       +   +   +     F  G  Y  L   
Sbjct: 175 --DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL-AEHLSETNFYLGKYYLSLGDL 231

Query: 120 AEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMK 151
             A   F      +   F    Y    LS + 
Sbjct: 232 DSATALFKLAVANNVHNFVEHRYALLELSLLG 263

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 1   MARLLSEMGKTQDARNVFEEILA----GNPLSFEALFENALLMDRCGEGEAVIKRLEEAL 56
           +A  L    + +      E+ILA     +    + L+E  +L D  G          +AL
Sbjct: 11  LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70

Query: 57  EIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSL 115
            I     +     +V   +        N D A +++   LE+ DP     +  +G+    
Sbjct: 71  AI-----RPDMP-EVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALYY 123

Query: 116 LDRNAEAKEEFAKYRQLSPKKFEVEGYL 143
             R+  A+++   + Q  P       +L
Sbjct: 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWL 151

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 18  FEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77
              +   +  + E L+       + G+ +   K  +    +        +  D R+ +  
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGL 58

Query: 78  IKFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135
               Q     ++AL+SY    + D N+ R  F     +  L     A+  F   R L+  
Sbjct: 59  GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

Query: 136 K 136
           +
Sbjct: 119 Q 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 61  DGNKLKEARDV-------RFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY 113
           DG  L   R +        + +   ++     D+A K +Q L + D  D R +   G   
Sbjct: 3   DGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACR 62

Query: 114 SLLDRNAEAKEEFAKYRQLSPK 135
             L    +A + ++    +   
Sbjct: 63  QSLGLYEQALQSYSYGALMDIN 84

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 13/125 (10%), Positives = 32/125 (25%), Gaps = 6/125 (4%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +     + GK  DA+ +F+ +   +                 G  E  ++       +  
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
           +           F  A+      ++D A   +                     ++L+   
Sbjct: 84  N------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT 137

Query: 121 EAKEE 125
             K+ 
Sbjct: 138 ARKDR 142

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 6/129 (4%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
             ++L ++ +   AR   +++   +  +       A +    G       +L++A  I +
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE-----KLQDAYYIFQ 190

Query: 61  D-GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN 119
           +  +K      +    A     Q   + A    QE   +D           ++   L + 
Sbjct: 191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250

Query: 120 AEAKEEFAK 128
            E    +  
Sbjct: 251 PEVTNRYLS 259

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 13/141 (9%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
            A +         A             S E +     ++ +    +   K L++  +  E
Sbjct: 107 AASIYFYDQNPDAALRTLH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE 161

Query: 61  DGNKLKEARDVRFIMAQIKFLQ--KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118
           D      A   +   A +      + + +A   +QE+  +          +   +    R
Sbjct: 162 D------ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215

Query: 119 NAEAKEEFAKYRQLSPKKFEV 139
              A+    +         E 
Sbjct: 216 WEAAEGVLQEALDKDSGHPET 236

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 17  VFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM- 75
             ++I A      + ++  A      G       R+EEA              +V +IM 
Sbjct: 24  TLKDINAIPDDMMDDIYSYAYDFYNKG-------RIEEAEVFFRFLCIYD-FYNVDYIMG 75

Query: 76  -AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134
            A I  +++   +A   Y        ND+ P F  G     L    +AKE F    Q S 
Sbjct: 76  LAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 50  KRLEEALEIAEDGNKLKEARDVR-------FIMAQIKFLQKNVDEALKSYQELEIEDPND 102
                 ++    G  LK+   +        +  A   + +  ++EA   ++ L I D  +
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV 139
                    IY + ++  +A + +A    L    +  
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 13/150 (8%)

Query: 2   ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED 61
            ++  E  +  +   + EE L   P   + L   A    R  E +  I+ L++ALE   +
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 62  -------------GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC 108
                            +        M   + L + +  A+   ++ +  + N FR    
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339

Query: 109 KGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138
              +++L D+  EA+  F K          
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVA 369

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.2 bits (104), Expect = 6e-06
 Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 5/142 (3%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLM---DRCGEGEAVIKRLEEALE 57
             RL     + + A+  FE+ L   P + E     A+     D     +  I  L +A+ 
Sbjct: 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203

Query: 58  IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD 117
           +  D   LK    +   + +++   +   E  K  +E   + P            Y   D
Sbjct: 204 LNPDNQYLKVLLAL--KLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261

Query: 118 RNAEAKEEFAKYRQLSPKKFEV 139
              +A E   K  +  P    +
Sbjct: 262 EPDKAIELLKKALEYIPNNAYL 283

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
            A    E G+ + A +   + +             +    R G     +  L++ +E  +
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
                          A I    +N ++ LK  +     +P        +G  Y       
Sbjct: 104 KSLTE-------HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156

Query: 121 EAKEEFAKYRQLSPK 135
            A + + +  + +P+
Sbjct: 157 NAVKAYTEMIKRAPE 171

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 12/138 (8%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
            A +L+++   +      E     NP   E             +    +K   E ++ A 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170

Query: 61  DGNKLKEARDVRFI--MAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLD 117
           +        D R     A       +  EA+    + +E  DPN  R Y  K      + 
Sbjct: 171 E--------DARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVK 221

Query: 118 RNAEAKEEFAKYRQLSPK 135
             A A E     R    +
Sbjct: 222 EYASALETLDAARTKDAE 239

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A +L + GK Q+A   ++E +  +P   +A       +    + +  ++    A++I  
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
                    D    +A I     N+ EA+ SY+      P+    Y        ++    
Sbjct: 109 A------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLF 153
           +  E   K   +   + E             L+
Sbjct: 163 DYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 22  LAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81
               P   ++L   A +    G  E  ++   +ALE+  +             +A +   
Sbjct: 2   PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE------FAAAHSNLASVLQQ 55

Query: 82  QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134
           Q  + EAL  Y+E     P     Y   G     +     A + + +  Q++P
Sbjct: 56  QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 9   GKTQDARNVFEEILAGNPLSFEALFE--NALLMDRCGEGEAVIKRLEEALEIAEDGNKLK 66
               D+    +  +  + L   + +   NA L      G+   K  ++AL       K+ 
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN-PKISQQALSAYAQAEKVD 251

Query: 67  EAR----DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEA 122
                  D+    A +   +++  EAL+ + +    DP    P   +  +   L R    
Sbjct: 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311

Query: 123 KEEFAKYRQLSPKKFE 138
            E      +  PKK +
Sbjct: 312 LE---SKGKTKPKKLQ 324

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 9/139 (6%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEAL-------FENALLMDRCGEGEAVIKRLEEALE 57
           +       D     + +L       + L       FE   + D   + + V + +E+ L+
Sbjct: 30  MGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ 89

Query: 58  IAEDGNKLKEAR-DVRFIMAQI-KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115
             E+     +       +  +          EA     +    +P     +   G +Y  
Sbjct: 90  QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149

Query: 116 LDRNAEAKEEFAKYRQLSP 134
                 A   F+       
Sbjct: 150 KGDVTSAHTCFSGALTHCK 168

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 14/131 (10%), Positives = 29/131 (22%), Gaps = 8/131 (6%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
              +   Q    V  +      +   A+  N          + ++  L +A         
Sbjct: 575 KQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG-----LT 629

Query: 65  LKEARDVRFIMAQIKFLQKNVDEALKSY-QELEIEDPNDFRPYFCKGMIYSLLDRNAEAK 123
             +           K   + V   L    Q   +  P+        G     L+      
Sbjct: 630 PAQV-VAIASHDGGKQALETVQRLLPVLCQAHGL-TPDQVVAIASNGGGKQALETVQRLL 687

Query: 124 EEFAKYRQLSP 134
               +   L+ 
Sbjct: 688 PVLCQAHGLTQ 698

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 8/135 (5%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
              +   Q    V  +     P    A+  N       G G+  ++ ++  L +    + 
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASN-------GGGKQALETVQRLLPVLCQAHG 695

Query: 65  LK-EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK 123
           L  E           K   + V   L    +     P+        G     L+      
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755

Query: 124 EEFAKYRQLSPKKFE 138
               +   L+P +  
Sbjct: 756 PVLCQAHGLTPAQVV 770

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 14/131 (10%), Positives = 28/131 (21%), Gaps = 6/131 (4%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
              +   Q    V  +     P    A+  N          + ++  L +A  +      
Sbjct: 541 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL-----T 595

Query: 65  LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE 124
             +           K   + V   L    +     P               L+       
Sbjct: 596 QVQV-VAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP 654

Query: 125 EFAKYRQLSPK 135
              +   L+P 
Sbjct: 655 VLCQAHGLTPD 665

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 8/132 (6%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA-EDGN 63
              +   Q    V  +     P    A+  +          + ++  L +A  +  +   
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

Query: 64  KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK 123
            +             K   + V   L    +     P+        G     L+      
Sbjct: 262 AI-------ASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314

Query: 124 EEFAKYRQLSPK 135
               +   L+P 
Sbjct: 315 PVLCQAHGLTPD 326

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 7/130 (5%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
              +   Q    V  +     P    A+  N       G G+  ++ ++  L +    + 
Sbjct: 338 KQALETVQRLLPVLCQAHGLTPDQVVAIASN-------GGGKQALETVQRLLPVLCQAHG 390

Query: 65  LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE 124
           L   + V       K   + V   L    +     P+              L+       
Sbjct: 391 LTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP 450

Query: 125 EFAKYRQLSP 134
              +   L+P
Sbjct: 451 VLCQTHGLTP 460

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 10/133 (7%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
              +   Q    V  +     P    A+  +       G G+  ++ ++  L +    + 
Sbjct: 270 KQALETVQRLLPVLCQAHGLTPDQVVAIASH-------GGGKQALETVQRLLPVLCQAHG 322

Query: 65  LKEAR-DVRFIMAQIKFLQKNVDEALKSY-QELEIEDPNDFRPYFCKGMIYSLLDRNAEA 122
           L   +          K   + V   L    Q   +  P+        G     L+     
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGL-TPDQVVAIASNGGGKQALETVQRL 381

Query: 123 KEEFAKYRQLSPK 135
                +   L+P 
Sbjct: 382 LPVLCQAHGLTPD 394

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 15/134 (11%), Positives = 30/134 (22%), Gaps = 6/134 (4%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
              +   Q    V  +     P    A+  +          + ++  L +A  +  D   
Sbjct: 439 KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD--- 495

Query: 65  LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE 124
                         K     V   L    +     P+        G     L+       
Sbjct: 496 ---QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 125 EFAKYRQLSPKKFE 138
              +   L+P +  
Sbjct: 553 VLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 14/134 (10%), Positives = 31/134 (23%), Gaps = 7/134 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                  +   Q    V  +     P    A+  +          + ++  L +A  +  
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGL-- 357

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
                 +           K   + V   L    +     P+        G   + L+   
Sbjct: 358 ---TPDQV-VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA-LETVQ 412

Query: 121 EAKEEFAKYRQLSP 134
                  +   L+P
Sbjct: 413 RLLPVLCQAHGLTP 426

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 70  DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129
           DV F  A   F   N  EA++ + +LE +  N    Y  + + Y  L +   A+++   Y
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 130 RQ 131
             
Sbjct: 64  FS 65

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENAL---LMDRCGEGEAVIKRLEEALE 57
           + +      +   A + F ++L   P  +      A      D   +        E+ +E
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 58  IAEDGNKLKEARDVR--FIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIY 113
           +   G    +   +     +A    + ++  +A  +++  L + DP + +      M  
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL-DPTNKKAIDGLKMKL 265

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
             ++L + G+   A   ++  +  +    +   +        G     I+ +E+ +    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
                     V + + Q  +  K   +A  S+ + LE+  PN +  Y  +    +  D +
Sbjct: 140 T------DPKVFYELGQAYYYNKEYVKADSSFVKVLEL-KPNIYIGYLWRARANAAQDPD 192

Query: 120 A---EAKEEFAKYRQLSPKK 136
                AK  + K  ++    
Sbjct: 193 TKQGLAKPYYEKLIEVCAPG 212

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 11/139 (7%)

Query: 1   MARLLSEMGKTQDAR---NVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE 57
            A    E+ K   A+     +   +               ++ + G+    I++ + A++
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102

Query: 58  IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLL 116
                       D+   +    + + N   A++  ++ +      D + ++  G  Y   
Sbjct: 103 RDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYN 155

Query: 117 DRNAEAKEEFAKYRQLSPK 135
               +A   F K  +L P 
Sbjct: 156 KEYVKADSSFVKVLELKPN 174

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 19/144 (13%), Positives = 54/144 (37%), Gaps = 11/144 (7%)

Query: 1   MARLLSEMGKTQDARNVFEEILA-----GNPLSFEALFENALLMDRCGEGEAVIKRLEEA 55
              +L ++ +  +A    E+        G P +     + A  +    +    +   ++A
Sbjct: 82  AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQA 141

Query: 56  LEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-----LEIEDPNDF-RPYFCK 109
             + E+  +L++A ++    +++   Q+  DEA  S Q+      E+E+     +    +
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201

Query: 110 GMIYSLLDRNAEAKEEFAKYRQLS 133
            ++         A++   +   + 
Sbjct: 202 VLVQLHRADYVAAQKCVRESYSIP 225

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 24/144 (16%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
              +       ++A+++FE+ L     + +  +    ++ +  + +  +  L+ A+E+ E
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156

Query: 61  D--------GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGM 111
           +        G  L                +  +DEAL  +    E  DP     ++  G+
Sbjct: 157 NDTEARFQFGMCLAN--------------EGMLDEALSQFAAVTEQ-DPGHADAFYNAGV 201

Query: 112 IYSLLDRNAEAKEEFAKYRQLSPK 135
            Y+  +   +A E   K   + P 
Sbjct: 202 TYAYKENREKALEMLDKAIDIQPD 225

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 24/143 (16%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED--- 61
            SE G  + A   F + +  N          A L+    E E  +   ++ALE+      
Sbjct: 33  GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT 92

Query: 62  -----GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSL 115
                GN                  ++   EA   +++ L      +   ++  G +   
Sbjct: 93  AYYGAGNVYVV--------------KEMYKEAKDMFEKALRA-GMENGDLFYMLGTVLVK 137

Query: 116 LDRNAEAKEEFAKYRQLSPKKFE 138
           L++   A     +  +L+    E
Sbjct: 138 LEQPKLALPYLQRAVELNENDTE 160

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 8/136 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
            A LLS + + + A   +++ L  +  +  A +    +       +      E+AL    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-- 120

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRN 119
               ++   D+ +++  +    +    AL   Q  +E+ + ND    F  GM  +     
Sbjct: 121 ---GMENG-DLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGML 175

Query: 120 AEAKEEFAKYRQLSPK 135
            EA  +FA   +  P 
Sbjct: 176 DEALSQFAAVTEQDPG 191

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 13/133 (9%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED--- 61
           L  +G+   A  +FE  L  NP   EAL+  A    + G     ++  +  +        
Sbjct: 15  LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74

Query: 62  -----GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSL 115
                               +    +  +++AL   ++   + +P     +  +G++Y+L
Sbjct: 75  GYMVLSEAYVALYRQAEDRER---GKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVYAL 130

Query: 116 LDRNAEAKEEFAK 128
           L    +A+    +
Sbjct: 131 LGERDKAEASLKQ 143

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 23/136 (16%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                   G  + A +V ++    NP       +  L+    GE +     L++AL + +
Sbjct: 90  AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

Query: 61  D-------GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMI 112
                                          +DEAL  Y + LE   P D          
Sbjct: 150 TPEIRSALAELYLS--------------MGRLDEALAQYAKALEQ-APKDLDLRVRYASA 194

Query: 113 YSLLDRNAEAKEEFAK 128
             L  +  EA    A 
Sbjct: 195 LLLKGKAEEAARAAAL 210

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 9/133 (6%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64
            +     +      ++ +  NP + E             +    +    +AL++  +   
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--- 76

Query: 65  LKEARDVRFIMAQIKFLQKN---VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE 121
                ++   +A + + Q +     +      +    D N+            +    A+
Sbjct: 77  ---NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQ 133

Query: 122 AKEEFAKYRQLSP 134
           A E + K   L+ 
Sbjct: 134 AIELWQKVMDLNS 146

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 12/135 (8%), Positives = 44/135 (32%), Gaps = 13/135 (9%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG---EAVIKRLEEALE 57
           +           ++   + + L     + E     A ++               +++AL 
Sbjct: 50  LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA 109

Query: 58  IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL-L 116
           +  +            ++A   F+Q N  +A++ +Q++   +           ++ S+ +
Sbjct: 110 LDSN------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT---QLVESINM 160

Query: 117 DRNAEAKEEFAKYRQ 131
            +  + + +   +  
Sbjct: 161 AKLLQRRSDLEHHHH 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 41/147 (27%)

Query: 10  KTQDARNVFEEILAGNPLSFEALF-ENALLMDRCGEGEAVIKRL------EEALEIAEDG 62
           +  + R +F+ +         ++F  +A +         ++  +       + + +    
Sbjct: 367 EPAEYRKMFDRL---------SVFPPSAHIP------TILLSLIWFDVIKSDVMVVVNKL 411

Query: 63  NKL----KEARDVRF-IMA-QIKFLQKNVDEA------LKSYQELEIEDPNDFRP----- 105
           +K     K+ ++    I +  ++   K  +E       +  Y   +  D +D  P     
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 106 YFCKGMIYSLLDRNAEAKEEFAKYRQL 132
           YF   + + L  +N E  E    +R +
Sbjct: 472 YFYSHIGHHL--KNIEHPERMTLFRMV 496

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 60/201 (29%)

Query: 8   MGKTQDARNVFEEILAGNPLS---FEALFENA---LLMDRCGEGEAVIKRLEEALEIAED 61
            GKT          +A +       +   +     L +  C   E V++ L+  L    D
Sbjct: 161 SGKT---------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQID 210

Query: 62  GNKLKEARDVRFIMAQIKFLQKNVDEAL------KSYQE-L----EIEDPNDFRPYF--- 107
            N    +       + IK    ++   L      K Y+  L     +++   +   F   
Sbjct: 211 PNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLS 265

Query: 108 CKGMI------------------YSLLDRN-----AEAKEEFAKYRQLSPKKFEVEGYLR 144
           CK ++                   SL   +      E K    KY    P+    E    
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 145 TPLSRMKLFGTN-DDIKNTNN 164
            P   + +   +  D   T +
Sbjct: 326 NPRR-LSIIAESIRDGLATWD 345

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 4   LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMD-RCGEGEAVIKRLEEALEIAEDG 62
           L  +      A  +  EI+  +P    A  E AL+   R  +     K+L       ++ 
Sbjct: 208 LHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267

Query: 63  NKLKEARD---VRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDR 118
             L E  +   +  I A    ++   DE+ ++    +++E    +  Y   G +Y +   
Sbjct: 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--SWLNYVLLGKVYEMKGM 325

Query: 119 NAEAKEEFAKYRQLSP 134
           N EA + +     L P
Sbjct: 326 NREAADAYLTAFNLRP 341

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 24/140 (17%)

Query: 5   LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED--- 61
             + G       + E  LA  P + +      L   +  + +  +  L +  E       
Sbjct: 52  YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN 111

Query: 62  -----GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSL 115
                G  L                    DEA+ S++  L +  PN+ + +      Y  
Sbjct: 112 VRFRLGVALDN--------------LGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQ 156

Query: 116 LDRNAEAKEEFAKYRQLSPK 135
           + R+ EA   F K  +L   
Sbjct: 157 MGRHEEALPHFKKANELDEG 176

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 9e-05
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 24/147 (16%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                ++ G+   A  + E++   +    +      +   + G  +   + LE +L  A 
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 61  D--------GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGM 111
           D        G    +               +  D A+    +  E  +P +F   F  G+
Sbjct: 74  DNVKVATVLGLTYVQ--------------VQKYDLAVPLLIKVAEA-NPINFNVRFRLGV 118

Query: 112 IYSLLDRNAEAKEEFAKYRQLSPKKFE 138
               L R  EA + F     L P + +
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGK 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 9/74 (12%), Positives = 26/74 (35%)

Query: 70  DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129
           +  + +A  ++     ++A   +Q L + D  D R +   G     + +   A   ++  
Sbjct: 22  EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81

Query: 130 RQLSPKKFEVEGYL 143
             +   +     + 
Sbjct: 82  AVMDIXEPRFPFHA 95

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 12/142 (8%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFEN--ALLMDRCGEGEAVIKRLEEALEI 58
           +A +     + + A   + + LA +  +   L  N    L ++    E   +RL EA + 
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLN-NYGGFLYEQ-KRYEEAYQRLLEASQ- 133

Query: 59  AEDGNKLKEARDVRFI-MAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLL 116
               + L   R   F  +  +    K   +A + +++ L + + N          +    
Sbjct: 134 ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NRNQPSVALEMADLLYKE 188

Query: 117 DRNAEAKEEFAKYRQLSPKKFE 138
                A++ +  + Q   +   
Sbjct: 189 REYVPARQYYDLFAQGGGQNAR 210

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 11/138 (7%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFEN--ALLMDRCGEGEAVIKRLEEALEI 58
            A +   +     A+  F + L+  P S E    N    L  R       +   ++AL  
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALSIKPDSAEINN-NYGWFLCGRLNRPAESMAYFDKALA- 105

Query: 59  AEDGNKLKEAR-DVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLL 116
               +                   Q     A    +  L    P     +        L 
Sbjct: 106 ----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-QPQFPPAFKELARTKMLA 160

Query: 117 DRNAEAKEEFAKYRQLSP 134
            +  +A   F KY+    
Sbjct: 161 GQLGDADYYFKKYQSRVE 178

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 24/137 (17%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
                +   + ++ R +    L  NP   +      +L +     ++    L  A+E+  
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

Query: 61  D--------GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGM 111
           D        G  L                     EAL +Y   L+I +P   R  +   +
Sbjct: 204 DDAQLWNKLGATLAN--------------GNRPQEALDAYNRALDI-NPGYVRVMYNMAV 248

Query: 112 IYSLLDRNAEAKEEFAK 128
            YS + +   A ++  +
Sbjct: 249 SYSNMSQYDLAAKQLVR 265

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 11/135 (8%)

Query: 4   LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED-- 61
             +E  K   A          +P         A+         A +  L   L       
Sbjct: 64  TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 123

Query: 62  -------GNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIY 113
                     +                     E        LE+ +PND + +   G++Y
Sbjct: 124 QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-NPNDAQLHASLGVLY 182

Query: 114 SLLDRNAEAKEEFAK 128
           +L +    A     +
Sbjct: 183 NLSNNYDSAAANLRR 197

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 46  EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105
           +A+ +RLE  L    D         +RF + +     +  D AL   +     DP     
Sbjct: 2   QAITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55

Query: 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136
           +   G         A A++ +      +  +
Sbjct: 56  WKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.92
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.91
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.87
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.87
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.87
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.87
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.87
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.87
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.86
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.86
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.86
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.86
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.85
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.85
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.85
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.85
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.85
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.85
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.85
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.84
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.83
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.83
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.83
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.83
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.82
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.82
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.82
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.82
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.82
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.81
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.81
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.81
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.81
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.8
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.8
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.8
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.8
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.79
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.78
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.78
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.78
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.78
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.78
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.78
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.78
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.77
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.77
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.77
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.77
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.77
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.77
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.76
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.76
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.75
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.75
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.74
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.74
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.74
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.73
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.73
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.73
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.73
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.72
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.71
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.71
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.71
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.7
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.7
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.7
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.69
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.68
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.68
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.67
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.67
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.67
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.66
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.65
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.65
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.65
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.65
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.64
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.63
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.62
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.6
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.6
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.59
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.58
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.57
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.57
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.56
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.56
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.56
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.56
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.5
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.5
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.49
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.49
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.48
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.47
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.42
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.42
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.41
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.4
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.37
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.37
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.37
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.36
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.34
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.32
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.31
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.29
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.27
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.23
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.18
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.15
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.13
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.12
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.12
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.03
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.01
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.0
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.98
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.97
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.97
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.92
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.9
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.9
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.83
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.81
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.69
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.63
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.53
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.47
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.4
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.39
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.31
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.25
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.24
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.22
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.17
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	98.16
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.07
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.95
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.94
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.85
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.61
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.59
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.52
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.49
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.37
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.36
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.2
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.2
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.19
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.16
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.07
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.05
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	97.04
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.62
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.48
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.43
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.3
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.2
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.1
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.77
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.73
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.23
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.2
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.79
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.05
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.67
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.65
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	90.49
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	89.92
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.6
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	89.28
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	89.28
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	88.69
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.67
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	88.54
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	88.21
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	86.96
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	86.88
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	86.25
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	85.85
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	85.76
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.59
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	85.44
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	85.4
2cwy_A	94	Hypothetical protein TTHA0068; structural genomics	85.37
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	84.78
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	83.1
3bu8_A	235	Telomeric repeat-binding factor 2; TRF2 TRFH domai	82.02
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	81.63
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	81.56
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	80.64

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.93  E-value=6.9e-26  Score=144.05  Aligned_cols=131  Identities=11%  Similarity=0.041  Sum_probs=122.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||.++...|++++|+..+++++...|.++.+++.+|.+|...|++++|+..|+++++++|+      +..++..+|.++.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~   76 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRFLGLLYE   76 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence            6788899999999999999999999999999999999999999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH-HHHHHhhCCCcc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE-FAKYRQLSPKKF  137 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~-l~~~~~~~p~~~  137 (164)
                      ..|++++|+.+|+++++.+|+++.+++.+|.++...|++++|... ++++++++|++.
T Consensus        77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A           77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            999999999999999999999999999999999999999887665 699999999983

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=4e-24  Score=139.52  Aligned_cols=130  Identities=15%  Similarity=0.276  Sum_probs=100.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.      ...++..+|.++.
T Consensus        11 lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~   84 (184)
T 3vtx_A           11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------SAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------hHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999988      4555555666666


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..++++.|+..+.+++..+|.+..++..+|.++...|++++|+..|++++..+|.+
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~  140 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF  140 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence            66666666666666666666666666666666666666666666666666666655

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.92  E-value=2.6e-24  Score=166.05  Aligned_cols=148  Identities=18%  Similarity=0.107  Sum_probs=135.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+      ...++..+|.++.
T Consensus        15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------~~~a~~nLg~~l~   88 (723)
T 4gyw_A           15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------FADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFG  154 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~  154 (164)
                      .+|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++++|++......+...+.....+.
T Consensus        89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            99999999999999999999999999999999999999999999999999999999444333443444444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=6.3e-24  Score=142.57  Aligned_cols=128  Identities=18%  Similarity=0.216  Sum_probs=96.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|+      ...++..+|.++..
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~   85 (217)
T 2pl2_A           12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------YLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHH
Confidence            556777778888888888888888888888888888888888888888888888877777      56677777777777


Q ss_pred             c-----------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 Q-----------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .           |++++|+..|++++..+|++..+++.+|.++...|++++|+..|++++.++ .+
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~  150 (217)
T 2pl2_A           86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT  150 (217)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred             hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence            7           777777777777777777777777777777777777777777777777766 44

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=6.7e-24  Score=142.43  Aligned_cols=146  Identities=16%  Similarity=0.099  Sum_probs=130.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHhhccccchhhhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRC-----------GEGEAVIKRLEEALEIAEDGNKLKEAR   69 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~   69 (164)
                      +|.++...|++++|+..|+++++.+|+++.++..+|.++...           |++++|+..++++++++|+      ..
T Consensus        45 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~  118 (217)
T 2pl2_A           45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YA  118 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cH
Confidence            367889999999999999999999999999999999999999           9999999999999999998      78


Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhh
Q 031170           70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSR  149 (164)
Q Consensus        70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~  149 (164)
                      .++..+|.++...|++++|+.+|++++..+ +++.+++.+|.++...|++++|+..|++++...|++......+...+..
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~  197 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL  197 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            899999999999999999999999999999 8999999999999999999999999999999999994433333333433


Q ss_pred             hhcc
Q 031170          150 MKLF  153 (164)
Q Consensus       150 ~~~~  153 (164)
                      .+.+
T Consensus       198 ~g~~  201 (217)
T 2pl2_A          198 KGKA  201 (217)
T ss_dssp             ----
T ss_pred             ccCH
Confidence            3333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.91  E-value=2.7e-24  Score=136.78  Aligned_cols=123  Identities=18%  Similarity=0.082  Sum_probs=115.0

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE   87 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   87 (164)
                      .+++-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|.      ++.+|..+|.++...|++++
T Consensus        15 l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~   88 (151)
T 3gyz_A           15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQ   88 (151)
T ss_dssp             HHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHH
Confidence            344444555677888899999999999999999999999999999999999999      79999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           88 ALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |+.+|++++..+|+++.+++.+|.++..+|++++|+..|++++.+.|+.
T Consensus        89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999999999999999999999999999999987

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.90  E-value=6e-23  Score=126.83  Aligned_cols=114  Identities=13%  Similarity=0.055  Sum_probs=106.4

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           20 EILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        20 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      ++..++|+..+++..+|..+++.|+|++|+..|+++++.+|.      +..++..+|.++..+|++++|+..|++++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   77 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLD   77 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence            455688999999999999999999999999999999999998      78999999999999999999999999999999


Q ss_pred             CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170          100 PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV  139 (164)
Q Consensus       100 p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~  139 (164)
                      |++..+++.+|.++..+|++++|+..|+++++++|++...
T Consensus        78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a  117 (126)
T 4gco_A           78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA  117 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999999999999999443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.90  E-value=7.6e-23  Score=133.44  Aligned_cols=130  Identities=20%  Similarity=0.216  Sum_probs=126.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|...+.+++...|.      ...++..+|.++.
T Consensus        45 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~  118 (184)
T 3vtx_A           45 LGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999998      7889999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|++++|+.+|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            99999999999999999999999999999999999999999999999999999987

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=4.1e-23  Score=149.24  Aligned_cols=140  Identities=6%  Similarity=0.041  Sum_probs=126.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGE-GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      |.++...|++++|+..|++++..+|++..+|..+|.++..+|+ +++|+..|+++++++|+      +..+|..+|.++.
T Consensus       104 g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~  177 (382)
T 2h6f_A          104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
Confidence            5677888999999999999999999999999999999999997 99999999999999998      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPL  147 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~  147 (164)
                      ..|++++|+.+|++++..+|++..+|+.+|.++..+|++++|+..+++++.++|.+......+..++
T Consensus       178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l  244 (382)
T 2h6f_A          178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI  244 (382)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999844333333333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=2e-22  Score=135.64  Aligned_cols=128  Identities=12%  Similarity=0.046  Sum_probs=123.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNP-LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      |.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..++++++.+|.      ...++..+|.++.
T Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~   87 (228)
T 4i17_A           14 GNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hHHHHHHHHHHHH
Confidence            6788999999999999999999999 99999999999999999999999999999999998      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCc-------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           81 LQKNVDEALKSYQELEIEDPNDF-------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      .+|++++|+.++++++..+|++.       .+++.+|.++...|++++|+..|++++...|.
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999998       66999999999999999999999999999999

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.90  E-value=9.7e-23  Score=135.94  Aligned_cols=129  Identities=19%  Similarity=0.185  Sum_probs=119.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFE----------------NALLMDRCGEGEAVIKRLEEALEIAEDGNKL   65 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   65 (164)
                      |..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++.+|+    
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----   86 (208)
T 3urz_A           11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN----   86 (208)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----
Confidence            567889999999999999999999999999999                999999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh------------------------------
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL------------------------------  115 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~------------------------------  115 (164)
                        +..++..+|.++...|++++|+.+|++++..+|+++.+++.+|.++..                              
T Consensus        87 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g  164 (208)
T 3urz_A           87 --NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG  164 (208)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence              789999999999999999999999999999999999998888877643                              


Q ss_pred             -----cCCHHHHHHHHHHHHhhCCCc
Q 031170          116 -----LDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       116 -----~~~~~~A~~~l~~~~~~~p~~  136 (164)
                           .|++++|+..|++++.+.|+.
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                 346788999999999999975

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=1.3e-22  Score=136.59  Aligned_cols=143  Identities=13%  Similarity=0.129  Sum_probs=127.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh-hhhhHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK-EARDVRFIMAQIK   79 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~   79 (164)
                      +|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++.+|++.... ....++..+|.++
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  127 (228)
T 4i17_A           48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF  127 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence            367899999999999999999999999999999999999999999999999999999999832110 0126688999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCH---------------------------HHHHHHHHHHH
Q 031170           80 FLQKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRN---------------------------AEAKEEFAKYR  130 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~---------------------------~~A~~~l~~~~  130 (164)
                      ...|++++|+.+|++++..+|+  +..+++.+|.++...|+.                           ++|+.++++++
T Consensus       128 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  207 (228)
T 4i17_A          128 QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV  207 (228)
T ss_dssp             HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999  899999999999998888                           99999999999


Q ss_pred             hhCCCcchhhhHh
Q 031170          131 QLSPKKFEVEGYL  143 (164)
Q Consensus       131 ~~~p~~~~~~~~~  143 (164)
                      ++.|++......+
T Consensus       208 ~l~p~~~~~~~~l  220 (228)
T 4i17_A          208 TLSPNRTEIKQMQ  220 (228)
T ss_dssp             HHCTTCHHHHHHH
T ss_pred             hcCCCCHHHHHHH
Confidence            9999994443333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=2e-22  Score=124.45  Aligned_cols=107  Identities=10%  Similarity=0.042  Sum_probs=102.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+      ...++..+|.++.
T Consensus        19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~   92 (126)
T 4gco_A           19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------FIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999999999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY  113 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  113 (164)
                      .+|++++|+.+|+++++.+|++..++..++.++
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999988887753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.89  E-value=2.3e-22  Score=127.47  Aligned_cols=119  Identities=14%  Similarity=0.039  Sum_probs=113.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170           14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQ   93 (164)
Q Consensus        14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   93 (164)
                      +...|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.      +..++..+|.++...|++++|+.+|+
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~   79 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYS   79 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            345788999999999999999999999999999999999999999998      78999999999999999999999999


Q ss_pred             HHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           94 ELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        94 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      +++..+|+++.+++.+|.++...|++++|+..|++++...|.+..
T Consensus        80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            999999999999999999999999999999999999999998743

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=5.5e-21  Score=131.17  Aligned_cols=132  Identities=15%  Similarity=0.108  Sum_probs=122.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..++..|+|++|+..|++++..+|++   +.+++.+|.++..+|++++|+..|+++++..|+...   ...+++.+|.+
T Consensus        22 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~a~~~lg~~   98 (261)
T 3qky_A           22 AMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---VPQAEYERAMC   98 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---hHHHHHHHHHH
Confidence            677899999999999999999999999   899999999999999999999999999999886322   36788899999


Q ss_pred             HHH--------ccCHHHHHHHHHHHHHhCCCCchhh-----------------hhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           79 KFL--------QKNVDEALKSYQELEIEDPNDFRPY-----------------FCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        79 ~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ++.        .|++++|+..|++++..+|++..+.                 +.+|.++...|++++|+..|++++...
T Consensus        99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  178 (261)
T 3qky_A           99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY  178 (261)
T ss_dssp             HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999        9999999999999999999988776                 888999999999999999999999999


Q ss_pred             CCc
Q 031170          134 PKK  136 (164)
Q Consensus       134 p~~  136 (164)
                      |++
T Consensus       179 p~~  181 (261)
T 3qky_A          179 PDT  181 (261)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            986

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.87  E-value=9.7e-22  Score=142.10  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=125.8

Q ss_pred             CchhhhhcCC-chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            1 MARLLSEMGK-TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         1 la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      +|.++...|+ +++|+..|++++..+|++..+|..+|.++..+|++++|+..|+++++++|+      +..+|..+|.++
T Consensus       137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~------~~~a~~~lg~~~  210 (382)
T 2h6f_A          137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred             HHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------CHHHHHHHHHHH
Confidence            3677889996 999999999999999999999999999999999999999999999999999      789999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh-cCCHHHH-----HHHHHHHHhhCCCcchhhhH
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL-LDRNAEA-----KEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~A-----~~~l~~~~~~~p~~~~~~~~  142 (164)
                      ...|++++|+.+|++++..+|++..+|+.+|.++.. .|..++|     +..+.+++.++|++.....+
T Consensus       211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~  279 (382)
T 2h6f_A          211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY  279 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999999999999999999999999999999999999 5665788     59999999999999443333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.87  E-value=8.7e-21  Score=116.66  Aligned_cols=130  Identities=22%  Similarity=0.317  Sum_probs=123.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.      ...++..+|.++.
T Consensus         7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~   80 (136)
T 2fo7_A            7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHHHHHHHHH
Confidence            3677889999999999999999999999999999999999999999999999999999987      6778889999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++|+.++++++...|.+...++.+|.++...|++++|+..+.+++...|.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999999999999999999999999998863

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.87  E-value=9.9e-22  Score=124.78  Aligned_cols=112  Identities=13%  Similarity=0.071  Sum_probs=105.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.+|...|+|++|++.|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+      ...++..+|.++.
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~  110 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT------QKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999998      7899999999999


Q ss_pred             HccCHHHHHHH-HHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170           81 LQKNVDEALKS-YQELEIEDPNDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        81 ~~~~~~~A~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~  118 (164)
                      ..|++++|+.. ++++++.+|+++.++..++.++...|+
T Consensus       111 ~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          111 KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999887766 599999999999999999999888775

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.87  E-value=2.8e-21  Score=125.36  Aligned_cols=128  Identities=10%  Similarity=0.080  Sum_probs=118.0

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH-HHHc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI-KFLQ   82 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~   82 (164)
                      .+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|.      +..++..+|.+ +...
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~   92 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQA   92 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHT
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhc
Confidence            3567899999999999999999999999999999999999999999999999999998      68889999999 8899


Q ss_pred             cCH--HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           83 KNV--DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        83 ~~~--~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      |++  ++|+.++++++..+|++..+++.+|.++...|++++|+..+.+++...|.+.
T Consensus        93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            999  9999999999999999999999999999999999999999999999999983

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.87  E-value=1.1e-21  Score=151.63  Aligned_cols=130  Identities=18%  Similarity=0.188  Sum_probs=125.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+      ...++..+|.++.
T Consensus        49 Lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           49 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|++++|+.+|+++++.+|++..++..+|.++...|++++|++.+++++.+.|+.
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            99999999999999999999999999999999999999999999999999887654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.87  E-value=1.5e-20  Score=126.81  Aligned_cols=129  Identities=19%  Similarity=0.164  Sum_probs=91.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++..
T Consensus        64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------NGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------SHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence            455666777777777777777777777777777777777777777777777777777665      45666667777777


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.++++++...|.+...+..+|.++...|++++|+..+++++...|.+
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  192 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH  192 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred             hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            7777777777777777777777777777777777777777777777777777665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.87  E-value=7.4e-21  Score=123.10  Aligned_cols=129  Identities=18%  Similarity=0.220  Sum_probs=111.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++..
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~   88 (186)
T 3as5_A           15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHH
Confidence            566778888888888888888888888888888888888888888888888888888887      57778888888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.++++++...|.+...++.+|.++...|++++|+..+.+++...|.+
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            8888888888888888888888888888888888888888888888888888877

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.87  E-value=1.6e-21  Score=122.55  Aligned_cols=118  Identities=14%  Similarity=0.061  Sum_probs=109.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHH
Q 031170           15 RNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE   94 (164)
Q Consensus        15 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~   94 (164)
                      -..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.      +..++..+|.++...|++++|+.+|++
T Consensus         4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~   77 (142)
T 2xcb_A            4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSY   77 (142)
T ss_dssp             -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            35788899999999999999999999999999999999999999998      789999999999999999999999999


Q ss_pred             HHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           95 LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        95 ~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ++..+|+++.+++.+|.++...|++++|+..|++++.+.|.+..
T Consensus        78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999999999999999998743

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.86  E-value=1.8e-20  Score=121.32  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=124.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++.
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~  121 (186)
T 3as5_A           48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHHHHHHHHH
Confidence            3677889999999999999999999999999999999999999999999999999999998      6788999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...|++
T Consensus       122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999999999999999999999887

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.86  E-value=1.5e-20  Score=135.35  Aligned_cols=129  Identities=19%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+      ...++..+|.++..
T Consensus        74 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~  147 (388)
T 1w3b_A           74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD------LYCVRSDLGNLLKA  147 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT------CTHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHH
Confidence            456667777777777777777777777777777777777777777777777777777776      56666777777777


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++...|.+
T Consensus       148 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  202 (388)
T 1w3b_A          148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF  202 (388)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            7777777777777777777777777777777777777777777777777777776

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.86  E-value=1.2e-20  Score=127.32  Aligned_cols=132  Identities=16%  Similarity=0.162  Sum_probs=115.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++.
T Consensus        29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~  102 (243)
T 2q7f_A           29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS------AATAYYGAGNVYV  102 (243)
T ss_dssp             -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHHHHHHH
Confidence            4678889999999999999999999999999999999999999999999999999999998      6888999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ..|++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...|.+..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  160 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE  160 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence            9999999999999999999999999999999999999999999999999999998843

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.86  E-value=2.6e-20  Score=124.14  Aligned_cols=129  Identities=13%  Similarity=0.108  Sum_probs=82.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++..
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------SAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH
Confidence            445566666666666666666666666666666666666666666666666666666665      45555666666666


Q ss_pred             c-cCHHHHHHHHHHHHH--hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 Q-KNVDEALKSYQELEI--EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~-~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      . |++++|+.++++++.  ..|.+..+++.+|.++...|++++|+..+.+++...|.+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  146 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF  146 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            6 666666666666666  344445556666666666666666666666666666655

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=2.8e-20  Score=130.51  Aligned_cols=136  Identities=18%  Similarity=0.100  Sum_probs=117.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh---hhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL---KEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~   78 (164)
                      |.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..+.....   .....++..+|.+
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~  245 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV  245 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence            5678888999999999999999999999999999999999999999999999999886432211   1135788899999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      +...|++++|+.++++++..+|++..++..+|.++...|++++|+.++++++...|++.
T Consensus       246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            99999999999999999999999999999999999999999999999999999999883

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.4e-20  Score=127.86  Aligned_cols=137  Identities=16%  Similarity=0.147  Sum_probs=115.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----------
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS-------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN----------   63 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------   63 (164)
                      +|.++...|++++|+..+++++...|++       +.++..+|.++...|++++|+..++++++..|...          
T Consensus        44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  123 (258)
T 3uq3_A           44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK  123 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence            3677888899999999999999988876       78889999999999999999999999998544311          


Q ss_pred             ----------hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           64 ----------KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        64 ----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                                .......++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...
T Consensus       124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence                      0011567788889999999999999999999999999998899999999999999999999999999999


Q ss_pred             CCcc
Q 031170          134 PKKF  137 (164)
Q Consensus       134 p~~~  137 (164)
                      |.+.
T Consensus       204 ~~~~  207 (258)
T 3uq3_A          204 PNFV  207 (258)
T ss_dssp             TTCH
T ss_pred             HHHH
Confidence            8873

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.5e-20  Score=127.67  Aligned_cols=130  Identities=16%  Similarity=0.100  Sum_probs=121.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILA--------------------------GNPLSFEALFENALLMDRCGEGEAVIKRLEE   54 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~   54 (164)
                      +|.++...|++++|+.+|++++.                          .+|.++.++..+|.++...|++++|+..+++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  164 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE  164 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            35677888888888888888888                          7788889999999999999999999999999


Q ss_pred             HHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC-
Q 031170           55 ALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS-  133 (164)
Q Consensus        55 a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~-  133 (164)
                      +++..|.      ...++..+|.++...|++++|+.++++++..+|++..+++.+|.++...|++++|+..+++++... 
T Consensus       165 a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          165 MIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             HHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence            9999998      688899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -----CCc
Q 031170          134 -----PKK  136 (164)
Q Consensus       134 -----p~~  136 (164)
                           |.+
T Consensus       239 ~~~~~p~~  246 (258)
T 3uq3_A          239 EVNNGSSA  246 (258)
T ss_dssp             HHHTTTTH
T ss_pred             hhcCCCch
Confidence                 776

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.85  E-value=2.7e-20  Score=132.98  Aligned_cols=136  Identities=16%  Similarity=0.189  Sum_probs=108.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE--------------   67 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------   67 (164)
                      |.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|.......              
T Consensus       106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~  185 (365)
T 4eqf_A          106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK  185 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence            567778888888888888888888888888888888888888888888888888887765321110              


Q ss_pred             --------------------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH
Q 031170           68 --------------------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE  121 (164)
Q Consensus        68 --------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  121 (164)
                                                ...++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  265 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE  265 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                                      245667788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhCCCcc
Q 031170          122 AKEEFAKYRQLSPKKF  137 (164)
Q Consensus       122 A~~~l~~~~~~~p~~~  137 (164)
                      |+..+++++...|.+.
T Consensus       266 A~~~~~~al~~~p~~~  281 (365)
T 4eqf_A          266 AVEAYTRALEIQPGFI  281 (365)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhcCCCch
Confidence            8888888888888873

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.85  E-value=5.7e-21  Score=141.64  Aligned_cols=126  Identities=13%  Similarity=0.109  Sum_probs=80.7

Q ss_pred             chhhhhcCCc-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKT-QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      |.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+       ..++..+|.++.
T Consensus       109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~lg~~~~  181 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------KVSLQNLSMVLR  181 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHT
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------HHHHHHHHHHHH
Confidence            4566667777 77777777777777777777777777777777777777777777777665       245555555555


Q ss_pred             Hc---------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc--------CCHHHHHHHHHHHHhhCC
Q 031170           81 LQ---------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL--------DRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        81 ~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------~~~~~A~~~l~~~~~~~p  134 (164)
                      ..         |++++|+.+|++++..+|++..+++.+|.++...        |++++|+..|++++.+.|
T Consensus       182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence            55         5555555555555555555555555555555555        555555555555555555

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.85  E-value=2.8e-20  Score=126.44  Aligned_cols=129  Identities=21%  Similarity=0.173  Sum_probs=70.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++..
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~  117 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555554      34444555555555


Q ss_pred             ccCHHHHHHHHHHHHH--hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEI--EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..+.+++...|.+
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence            5555555555555555  444444455555555555555555555555555555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.85  E-value=3.7e-20  Score=133.31  Aligned_cols=127  Identities=17%  Similarity=0.042  Sum_probs=58.9

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.      .+.++..+|.++...|
T Consensus       212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g  285 (388)
T 1w3b_A          212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKG  285 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcC
Confidence            3334444444444444444444444444444444444444444444444444444443      3344444444444444


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|++
T Consensus       286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            44444444444444444444444444444444444444444444444444444

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.85  E-value=6.9e-20  Score=124.52  Aligned_cols=131  Identities=12%  Similarity=0.048  Sum_probs=121.7

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hccccchhhhhhhHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE--IAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~   78 (164)
                      +|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.+++++++  ..|.      ...++..+|.+
T Consensus        77 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~la~~  150 (252)
T 2ho1_A           77 LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE------RSRVFENLGLV  150 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT------HHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc------cHHHHHHHHHH
Confidence            367788999999999999999999999999999999999999999999999999999  6665      67888899999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      +...|++++|+.++++++...|.+..+++.+|.++...|++++|+..+++++...|.+.
T Consensus       151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  209 (252)
T 2ho1_A          151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA  209 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            99999999999999999999999999999999999999999999999999999999873

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.85  E-value=6.9e-20  Score=121.79  Aligned_cols=126  Identities=13%  Similarity=0.158  Sum_probs=118.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++  .| ++.+++.+|.++...|++++|+..++++++.+|.      ...++..+|.++..
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~lg~~~~~   83 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHH
Confidence            677889999999999999996  33 7889999999999999999999999999999998      78899999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCc----------------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDF----------------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.+|++++...|.+.                .+++.+|.++...|++++|+..+++++...|.+
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            9999999999999999988877                889999999999999999999999999999987

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.85  E-value=1.1e-20  Score=140.23  Aligned_cols=136  Identities=15%  Similarity=0.142  Sum_probs=127.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhhccccchhhhhhhH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRC---------GEGEAVIKRLEEALEIAEDGNKLKEARDV   71 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   71 (164)
                      +|.++...|++++|+..|++++..+|+ ..++..+|.++...         |++++|+..|+++++.+|+      ...+
T Consensus       143 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~  215 (474)
T 4abn_A          143 LGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DGRS  215 (474)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CHHH
Confidence            477899999999999999999999999 79999999999999         9999999999999999998      7889


Q ss_pred             HHHHHHHHHHc--------cCHHHHHHHHHHHHHhCC---CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhh
Q 031170           72 RFIMAQIKFLQ--------KNVDEALKSYQELEIEDP---NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVE  140 (164)
Q Consensus        72 ~~~la~~~~~~--------~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~  140 (164)
                      +..+|.++...        |++++|+.+|++++..+|   .++.+++.+|.++...|++++|+..|++++.+.|++....
T Consensus       216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~  295 (474)
T 4abn_A          216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ  295 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999        999999999999999999   9999999999999999999999999999999999984433


Q ss_pred             hHh
Q 031170          141 GYL  143 (164)
Q Consensus       141 ~~~  143 (164)
                      ..+
T Consensus       296 ~~l  298 (474)
T 4abn_A          296 QRE  298 (474)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.85  E-value=1.3e-20  Score=129.28  Aligned_cols=134  Identities=14%  Similarity=0.132  Sum_probs=118.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH--------cCCcHHHHHHHHHHHhhccccchhhhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDR--------CGEGEAVIKRLEEALEIAEDGNKLKEAR   69 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~   69 (164)
                      +|.++...|++++|+..|+++++.+|++   +.+++.+|.++..        .|++++|+..|+++++.+|+....   .
T Consensus        58 lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~  134 (261)
T 3qky_A           58 LARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV---D  134 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH---H
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH---H
Confidence            4778999999999999999999998854   6789999999999        999999999999999999984321   1


Q ss_pred             hHH--------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhhhHHHHHHhc----------CCHHHH
Q 031170           70 DVR--------------FIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYFCKGMIYSLL----------DRNAEA  122 (164)
Q Consensus        70 ~~~--------------~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~----------~~~~~A  122 (164)
                      .+.              +.+|.+|...|++++|+..|++++..+|++   ..+++.+|.++...          |++++|
T Consensus       135 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A  214 (261)
T 3qky_A          135 DATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA  214 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence            222              788999999999999999999999999984   46899999999977          899999


Q ss_pred             HHHHHHHHhhCCCcc
Q 031170          123 KEEFAKYRQLSPKKF  137 (164)
Q Consensus       123 ~~~l~~~~~~~p~~~  137 (164)
                      +..+++++...|++.
T Consensus       215 ~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          215 VELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHCCCCh
Confidence            999999999999983

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.85  E-value=3.4e-20  Score=127.29  Aligned_cols=133  Identities=15%  Similarity=0.028  Sum_probs=118.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++. |.....  ...++..+|.++..
T Consensus        10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~--~~~~~~~lg~~~~~   86 (272)
T 3u4t_A           10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKA--KSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTC--CHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhH--HHHHHHHHHHHHHH
Confidence            678889999999999999999999999999999999999999999999999999994 431111  24457899999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+.
T Consensus        87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  142 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP  142 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred             cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence            99999999999999999999999999999999999999999999999999999883

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.85  E-value=8.3e-20  Score=121.66  Aligned_cols=130  Identities=13%  Similarity=0.029  Sum_probs=122.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--hccccchhhhhhhHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRC-GEGEAVIKRLEEALE--IAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~   77 (164)
                      +|.++...|++++|+.+|++++...|+++.++..+|.++... |++++|+..++++++  ..|.      ...++..+|.
T Consensus        48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~  121 (225)
T 2vq2_A           48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT------PYIANLNKGI  121 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC------HHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc------hHHHHHHHHH
Confidence            367889999999999999999999999999999999999999 999999999999999  4444      5778889999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC-Cc
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP-KK  136 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p-~~  136 (164)
                      ++...|++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...| .+
T Consensus       122 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  181 (225)
T 2vq2_A          122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ  181 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999 66

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.85  E-value=4.2e-21  Score=147.91  Aligned_cols=128  Identities=16%  Similarity=0.150  Sum_probs=125.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+      ...++..+|.++..
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~~~~  513 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG------ELAPKLALAATAEL  513 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999998      78999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++ +.+|+++++.+|++..+++.+|.++...|++++|+..|++++.++|.+
T Consensus       514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence            999999 999999999999999999999999999999999999999999999998

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=8.7e-20  Score=128.00  Aligned_cols=129  Identities=15%  Similarity=0.167  Sum_probs=99.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +.++...|++++|+..+++++..+|+++.++..+|.++...| ++++|+..++++++.+|.      ...++..+|.++.
T Consensus        63 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~  136 (330)
T 3hym_B           63 IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT------YGPAWIAYGHSFA  136 (330)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT------CTHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHH
Confidence            345667777777777777777777777777777777777777 777777777777777776      5667777777788


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++|+.++++++...|.+..+++.+|.++...|++++|+..+++++...|.+
T Consensus       137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  192 (330)
T 3hym_B          137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED  192 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence            88888888888888777777777777777777777888888888888887777777

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=2.4e-20  Score=133.22  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=120.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPL--SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      |.++...|++++|+..|++++...|+  ++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++
T Consensus       184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~  257 (365)
T 4eqf_A          184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATL  257 (365)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence            67888999999999999999999999  8999999999999999999999999999999998      788999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ...|++++|+.+|++++..+|++..+++.+|.++...|++++|+..|++++.+.|..
T Consensus       258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999999999999999999999999875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.84  E-value=7.5e-20  Score=123.20  Aligned_cols=133  Identities=9%  Similarity=0.070  Sum_probs=117.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..++..|+|++|+..|++++...|+++   .+++.+|.++...|++++|+..|+++++.+|+...   ...+++.+|.+
T Consensus        11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~~~g~~   87 (225)
T 2yhc_A           11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMYMRGLT   87 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHHHHHHH
Confidence            6778999999999999999999999874   78999999999999999999999999999998321   13477888888


Q ss_pred             HHH------------------ccCHHHHHHHHHHHHHhCCCCchhh-----------------hhHHHHHHhcCCHHHHH
Q 031170           79 KFL------------------QKNVDEALKSYQELEIEDPNDFRPY-----------------FCKGMIYSLLDRNAEAK  123 (164)
Q Consensus        79 ~~~------------------~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~  123 (164)
                      +..                  .|++++|+..|++++..+|++..++                 +.+|.++...|++++|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~  167 (225)
T 2yhc_A           88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV  167 (225)
T ss_dssp             HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            876                  6799999999999999999988665                 56788999999999999


Q ss_pred             HHHHHHHhhCCCcc
Q 031170          124 EEFAKYRQLSPKKF  137 (164)
Q Consensus       124 ~~l~~~~~~~p~~~  137 (164)
                      ..|++++...|++.
T Consensus       168 ~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          168 NRVEGMLRDYPDTQ  181 (225)
T ss_dssp             HHHHHHHHHSTTSH
T ss_pred             HHHHHHHHHCcCCC
Confidence            99999999999973

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=1.4e-19  Score=129.08  Aligned_cols=136  Identities=17%  Similarity=0.131  Sum_probs=101.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE--------------   67 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------   67 (164)
                      |.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|.......              
T Consensus       105 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 1fch_A          105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS  184 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred             HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence            556667777777777777777777777777777777777777777777777777776665332210              


Q ss_pred             -------------------------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170           68 -------------------------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL  116 (164)
Q Consensus        68 -------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  116 (164)
                                                     ...++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...
T Consensus       185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  264 (368)
T 1fch_A          185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG  264 (368)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence                                           2355667788888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhhCCCcc
Q 031170          117 DRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus       117 ~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      |++++|+..+++++...|.+.
T Consensus       265 g~~~~A~~~~~~al~~~~~~~  285 (368)
T 1fch_A          265 NQSEEAVAAYRRALELQPGYI  285 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCcH
Confidence            888888888888888888773

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.84  E-value=2.3e-19  Score=123.07  Aligned_cols=130  Identities=20%  Similarity=0.184  Sum_probs=104.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.      ...++..+|.++..
T Consensus        50 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~  123 (275)
T 1xnf_A           50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHH
Confidence            567778888888888888888888888888888888888888888888888888888887      57778888888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCc----------------------------------------------------------
Q 031170           82 QKNVDEALKSYQELEIEDPNDF----------------------------------------------------------  103 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~----------------------------------------------------------  103 (164)
                      .|++++|+.+|++++..+|++.                                                          
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  203 (275)
T 1xnf_A          124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD  203 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            8888888888888888777653                                                          


Q ss_pred             ------------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170          104 ------------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus       104 ------------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                                  ..++.+|.++...|++++|+..+++++...|.++
T Consensus       204 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  249 (275)
T 1xnf_A          204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  249 (275)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             hcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence                        3445667777777888888888888887777663

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=8.9e-20  Score=130.04  Aligned_cols=124  Identities=15%  Similarity=0.169  Sum_probs=120.2

Q ss_pred             hcCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            7 EMGKTQDARNVFEEILAGNPL--SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      ..|++++|+..|++++...|+  ++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++...|+
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~  266 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQ  266 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTC
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCC
Confidence            789999999999999999999  8999999999999999999999999999999998      68899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+
T Consensus       267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999998877

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.84  E-value=1.1e-19  Score=128.68  Aligned_cols=129  Identities=16%  Similarity=0.194  Sum_probs=72.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.      ...++..+|.++..
T Consensus        10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~   83 (359)
T 3ieg_A           10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD------FTAARLQRGHLLLK   83 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cchHHHHHHHHHHH
Confidence            445556666666666666666666666666666666666666666666666666666655      34455555555555


Q ss_pred             ccCHHHHHHHHHHHHHhCC---CCchhhhhH------------HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDP---NDFRPYFCK------------GMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p---~~~~~~~~~------------~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.+|++++..+|   ++..++..+            |.++...|++++|+..+.+++...|.+
T Consensus        84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  153 (359)
T 3ieg_A           84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD  153 (359)
T ss_dssp             HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence            5555555555555555555   444444333            344444555555555555555555444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.83  E-value=4.7e-20  Score=126.55  Aligned_cols=130  Identities=20%  Similarity=0.200  Sum_probs=121.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGN----PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      +..+...|++++|+..|+++++..    |.++.+++.+|.++...|++++|+..|+++++.+|.      ...++..+|.
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~   85 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGI   85 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHH
Confidence            445567789999999999999984    556788999999999999999999999999999998      7889999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      ++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+..+++++...|.+.
T Consensus        86 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           86 YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999999999999999999999999999999999999983

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.83  E-value=1.5e-19  Score=115.37  Aligned_cols=127  Identities=13%  Similarity=0.014  Sum_probs=116.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++.+|.      ...++..+|.++.
T Consensus        19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~   92 (166)
T 1a17_A           19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHH
Confidence            3677889999999999999999999999999999999999999999999999999999998      6889999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhH--HHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCK--GMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ..|++++|+.+|++++..+|.+..++..+  +..+...|++++|+..+.++....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            99999999999999999999998888544  444778899999999999886654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=2.1e-19  Score=127.16  Aligned_cols=132  Identities=13%  Similarity=0.075  Sum_probs=116.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcc---ccchhhhhhhHHHHH--
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE---DGNKLKEARDVRFIM--   75 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~l--   75 (164)
                      +|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|   .      ...++..+  
T Consensus        43 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~  116 (359)
T 3ieg_A           43 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE------EKEAESQLVK  116 (359)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH------HHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC------hHHHHHHHHH
Confidence            367888999999999999999999999999999999999999999999999999999998   5      44455444  


Q ss_pred             ----------HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           76 ----------AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        76 ----------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                                |.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..+.+++...|.+..
T Consensus       117 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  189 (359)
T 3ieg_A          117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE  189 (359)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence                      788889999999999999999999998888999999999999999999999999998888843

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.83  E-value=1e-19  Score=126.88  Aligned_cols=129  Identities=16%  Similarity=0.020  Sum_probs=121.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+      ........+..+..
T Consensus       124 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~------~~~~~~~~~~~l~~  197 (287)
T 3qou_A          124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD------TRYQGLVAQIELLX  197 (287)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS------HHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc------hHHHHHHHHHHHHh
Confidence            567889999999999999999999999999999999999999999999999999999997      55666677777889


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .++.++|+..+++++..+|++..+++.+|.++...|++++|+..|.++++.+|.+
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999999999999987

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.83  E-value=7.7e-20  Score=116.14  Aligned_cols=97  Identities=10%  Similarity=0.059  Sum_probs=93.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+      ++.+++.+|.++.
T Consensus        42 lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~------~~~~~~~lg~~~~  115 (151)
T 3gyz_A           42 YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------DYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS------CCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      ..|++++|+.+|++++...|+..
T Consensus       116 ~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999988764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.83  E-value=2.8e-19  Score=134.98  Aligned_cols=130  Identities=12%  Similarity=-0.050  Sum_probs=115.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|++.|+++++.+|+++.++..+|.++..+|++++|+..++++++.+|+      ...++..+|.++.
T Consensus        29 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~  102 (568)
T 2vsy_A           29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------HPGIALWLGHALE  102 (568)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH
Confidence            3667888899999999999999999999999999999999999999999999999998887      6788888999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc---CCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL---DRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++|+.+|+++++.+|++..++..++.++...   |++++|+..+++++...|.+
T Consensus       103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999898888888999998888   89999999999999888886

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2e-19  Score=110.46  Aligned_cols=102  Identities=17%  Similarity=0.047  Sum_probs=89.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      |..+..+..+|..++..|++++|+..|+++++.+|.      +..++..+|.++...|++++|+.++++++..+|++..+
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~   74 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA   74 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence            345677888888889999999999999999998888      67888888999999999999999999999988988888


Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170          106 YFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ++.+|.++...|++++|+..+++++.+.
T Consensus        75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           75 YIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            8899999999999999999999998888

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=2.3e-19  Score=120.86  Aligned_cols=136  Identities=9%  Similarity=0.036  Sum_probs=118.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH------------------cCCcHHHHHHHHHHHhhc
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFE---ALFENALLMDR------------------CGEGEAVIKRLEEALEIA   59 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~------------------~~~~~~A~~~~~~a~~~~   59 (164)
                      +|.++...|++++|+..|+++++.+|+++.   +++.+|.++..                  .|++++|+..|+++++.+
T Consensus        47 lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  126 (225)
T 2yhc_A           47 LIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY  126 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence            367899999999999999999999999865   78999998876                  578999999999999999


Q ss_pred             cccchhhh-----------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc---hhhhhHHHHHHhcCCHHHHHHH
Q 031170           60 EDGNKLKE-----------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF---RPYFCKGMIYSLLDRNAEAKEE  125 (164)
Q Consensus        60 ~~~~~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~  125 (164)
                      |+......           .......+|.+++..|++++|+..|+++++.+|+++   .+++.+|.++..+|++++|+..
T Consensus       127 P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~  206 (225)
T 2yhc_A          127 PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV  206 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence            98542210           012225789999999999999999999999999986   6799999999999999999999


Q ss_pred             HHHHHhhCCCc
Q 031170          126 FAKYRQLSPKK  136 (164)
Q Consensus       126 l~~~~~~~p~~  136 (164)
                      ++.+....|++
T Consensus       207 ~~~l~~~~~~~  217 (225)
T 2yhc_A          207 AKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHCCSCC
T ss_pred             HHHHHhhCCCc
Confidence            99999999887

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.82  E-value=2.6e-19  Score=122.85  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=118.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      +|.++...|++++|+..+++++. .|.+    ..++..+|.++...|++++|+..++++++.+|.      ...++..+|
T Consensus        43 l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~  115 (272)
T 3u4t_A           43 RAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIG  115 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHH
Confidence            36788999999999999999999 4444    445899999999999999999999999999998      688999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .++...|++++|+.+|++++..+|.+..+++.+|......+++++|+..+++++...|.+.
T Consensus       116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  176 (272)
T 3u4t_A          116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY  176 (272)
T ss_dssp             HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch
Confidence            9999999999999999999999999999999999445556699999999999999999983

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.6e-19  Score=109.97  Aligned_cols=107  Identities=11%  Similarity=0.023  Sum_probs=100.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+      ...++..+|.++..
T Consensus        11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~   84 (126)
T 3upv_A           11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------FVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999998      78899999999999


Q ss_pred             ccCHHHHHHHHHHHHHhC------CCCchhhhhHHHHHH
Q 031170           82 QKNVDEALKSYQELEIED------PNDFRPYFCKGMIYS  114 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~------p~~~~~~~~~~~~~~  114 (164)
                      .|++++|+.+|++++..+      |.+..++..++.+..
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            999999999999999999      888877777766654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.82  E-value=9.1e-19  Score=127.94  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=102.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|.      ...++..+|.++..
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~  106 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD------FTAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHH
Confidence            566778888888888888888888888888888888888888888888888888888887      56777788888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCc---hhhhhH------------HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDF---RPYFCK------------GMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~---~~~~~~------------~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++++|+.+|++++..+|.+.   .++..+            |.++...|++++|+..+++++...|.+
T Consensus       107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  176 (450)
T 2y4t_A          107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD  176 (450)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            8888888888888888777766   554443            555777788888888888888777776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.82  E-value=6.1e-19  Score=123.23  Aligned_cols=129  Identities=11%  Similarity=0.033  Sum_probs=73.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENA--LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      |.++...|++++|+..|++++..+|++.......+  .++...|++++|+..|+++++.+|+      ...++..+|.++
T Consensus       137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~~~~~~~la~~~  210 (291)
T 3mkr_A          137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TLLLLNGQAACH  210 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHH
Confidence            34555555555555555555555555543333222  2222335555555555555555555      455555666666


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH-HHHHHHHHHhhCCCc
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE-AKEEFAKYRQLSPKK  136 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-A~~~l~~~~~~~p~~  136 (164)
                      ...|++++|+..|++++..+|+++.++..+|.++...|+..+ +.+++++++..+|++
T Consensus       211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            666666666666666666666666666666666666666654 345556666666665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=3.4e-19  Score=124.80  Aligned_cols=126  Identities=14%  Similarity=0.172  Sum_probs=122.0

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++...|
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGN  220 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTT
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcC
Confidence            4778899999999999999999999999999999999999999999999999999998      6888999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...|.
T Consensus       221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999999999999998

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.82  E-value=1e-19  Score=118.18  Aligned_cols=128  Identities=16%  Similarity=0.123  Sum_probs=112.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH-
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF-   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-   80 (164)
                      |..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+       +.....++.+.. 
T Consensus        13 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-------~~~~~~~~~~~~~   85 (176)
T 2r5s_A           13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQD-------NSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-------HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC-------hHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999882       233333443422 


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..++..+|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|..
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            33445568999999999999999999999999999999999999999999999975

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.82  E-value=3.6e-19  Score=114.18  Aligned_cols=105  Identities=15%  Similarity=0.007  Sum_probs=65.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      +.++..++.+|.++...|++++|+..|+++++.+|.      ...++..+|.++...|++++|+.+|++++..+|++..+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   81 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            334555666666666666666666666666666665      45556666666666666666666666666666666666


Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++.+|.++...|++++|+..|++++.+.|++
T Consensus        82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence            6666666666666666666666666666665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.82  E-value=4.3e-19  Score=133.99  Aligned_cols=125  Identities=14%  Similarity=0.087  Sum_probs=102.9

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE   87 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   87 (164)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+      ...++..+|.++..+|++++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~   75 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAE   75 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHH
Confidence            578999999999999999999999999999999999999999999999999998      78899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           88 ALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      |+.+|++++..+|++..+++.+|.++...|++++|+..+++++...|.+..
T Consensus        76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  126 (568)
T 2vsy_A           76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY  126 (568)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999999999843

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.81  E-value=2.6e-19  Score=112.38  Aligned_cols=106  Identities=10%  Similarity=0.019  Sum_probs=97.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+      ++.+++.+|.++..
T Consensus        25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------EPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999998      78899999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIY  113 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  113 (164)
                      .|++++|+.+|++++..+|.++........+.
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  130 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHEALAARAG  130 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            99999999999999999998877655444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=4.9e-19  Score=108.93  Aligned_cols=106  Identities=16%  Similarity=0.063  Sum_probs=82.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           25 NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        25 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      .|.++.+++.+|.++...|++++|+..++++++.+|.      ...++..+|.++...|++++|+.++++++..+|.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            4566777777777777888888888888888777776      5667777777777778888888888887777777777


Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          105 PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++.+|.++...|++++|+..+.+++...|.+
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence            77777877777888888888888887777776

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.81  E-value=4.7e-19  Score=126.14  Aligned_cols=126  Identities=13%  Similarity=0.086  Sum_probs=117.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS---------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL   65 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   65 (164)
                      +|.+++..|++++|+..|++++...|++               ..++..+|.++..+|++++|+..++++++++|.    
T Consensus       153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----  228 (336)
T 1p5q_A          153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN----  228 (336)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence            3678899999999999999999999999               689999999999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHH-HHHHHHHHhh
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEA-KEEFAKYRQL  132 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A-~~~l~~~~~~  132 (164)
                        +..+++.+|.++...|++++|+.+|++++..+|++..++..++.++...|++++| ...+.+++..
T Consensus       229 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          229 --NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              7889999999999999999999999999999999999999999999999999998 5566776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.81  E-value=3.4e-19  Score=112.81  Aligned_cols=99  Identities=13%  Similarity=0.018  Sum_probs=94.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+      ++.+++.+|.++..
T Consensus        28 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           28 AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX------EPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999998      78999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPY  106 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~  106 (164)
                      .|++++|+.+|++++...|+++...
T Consensus       102 ~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A          102 XGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             cCCHHHHHHHHHHHHHHCcCCCcch
Confidence            9999999999999999999877653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.81  E-value=8e-19  Score=112.57  Aligned_cols=109  Identities=13%  Similarity=0.059  Sum_probs=102.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|.      ...++..+|.++.
T Consensus        17 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~   90 (164)
T 3sz7_A           17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------YSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999998      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      ..|++++|+.+|++++..+|++..+++..+.....
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999988777765443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.81  E-value=4.2e-19  Score=123.96  Aligned_cols=136  Identities=15%  Similarity=0.080  Sum_probs=107.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRC-GEGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      +|.+|...|++++|+.+|++++...|..      ..++..+|.++... |++++|+.+|++++++.|..+.......++.
T Consensus        83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~  162 (292)
T 1qqe_A           83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            3567888889999999999998887643      45788889999886 9999999999999998876433222245677


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCch-------hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFR-------PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|.++..+|++++|+.+|++++...|.+..       .++.+|.++..+|++++|+..+++++.+.|..
T Consensus       163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            8899999999999999999999998887654       45778888999999999999999999988876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.81  E-value=3.1e-20  Score=132.21  Aligned_cols=138  Identities=13%  Similarity=0.076  Sum_probs=122.3

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---------hhhhhhHHHHHHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---------LKEARDVRFIMAQ   77 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~la~   77 (164)
                      ..+++++|+..|++++...|.++.++..+|.+++..|++++|+..|+++++..|....         ......++..+|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999999999999999999999999999998310         0001478889999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR  144 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~  144 (164)
                      ++..+|++++|+.+|++++..+|++..+++.+|.++..+|++++|+..|++++.+.|.+......+.
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  271 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA  271 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999844333333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.81  E-value=9e-19  Score=107.19  Aligned_cols=106  Identities=19%  Similarity=0.119  Sum_probs=71.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           25 NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        25 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      .|.++.++..+|.++...|++++|+..+++++...|.      ...++..+|.++...|++++|+.++++++..+|.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   81 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH
Confidence            3445566666666666777777777777777666665      4556666667777777777777777777666666666


Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          105 PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++.+|.++...|++++|+..+.+++...|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            66666776666777777777777776666665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=3.8e-19  Score=137.06  Aligned_cols=126  Identities=12%  Similarity=0.112  Sum_probs=120.7

Q ss_pred             hhcCCchHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            6 SEMGKTQDARNVFEEIL--------AGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      ...|++++|++.|++++        ..+|++..+++.+|.++...|++++|+..|+++++.+|+      +..++..+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~  475 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAV  475 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHH
Confidence            46799999999999999        899999999999999999999999999999999999998      7899999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ++...|++++|+..|++++..+|++..+++.+|.++...|++++ +..|+++++.+|.+..
T Consensus       476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~  535 (681)
T 2pzi_A          476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS  535 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH
Confidence            99999999999999999999999999999999999999999999 9999999999999933

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.80  E-value=1.4e-18  Score=129.45  Aligned_cols=129  Identities=14%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|+ +.++..+|.++...|++++|+..++++++.+|.      ...++..+|.++..
T Consensus       250 g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          250 GIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE------YPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHh
Confidence            34566667777777777777777776 667777777777777777777777777777766      56666677777777


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+.
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  378 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP  378 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            77777777777777777777777777777777777777777777777777777663

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.80  E-value=2.7e-18  Score=129.57  Aligned_cols=135  Identities=13%  Similarity=0.048  Sum_probs=109.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh-hhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA-RDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~~~   80 (164)
                      |.++...|++++|+++|++++...|+++.++..+|.++...|++++|+..|+++++..|..+..... ..++..+|.++.
T Consensus       448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~  527 (597)
T 2xpi_A          448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR  527 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence            5567778888888888888888888888888888888888888888888888888875421110002 567778888888


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++|+..|++++..+|++..++..++.++...|++++|+..+++++.+.|++
T Consensus       528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            88999999999988888888888888888888888899999999999998888888

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.80  E-value=5.8e-19  Score=108.95  Aligned_cols=100  Identities=11%  Similarity=-0.023  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc------
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF------  103 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------  103 (164)
                      .++..+|.+++.+|+|++|+..|+++++++|+      ...++..+|.+|..+|++++|+.++++++..+|++.      
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            34445555555555555555555555555555      455555555555555555555555555555544432      


Q ss_pred             -hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170          104 -RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus       104 -~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                       .++..+|.++..+|++++|+..|++++...|+
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence             23445555555555555555555555555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=2.2e-18  Score=120.38  Aligned_cols=126  Identities=13%  Similarity=0.039  Sum_probs=106.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH--HHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA--QIK   79 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la--~~~   79 (164)
                      |.++...|++++|++.+++     |+++.++..+|.++..+|++++|+..++++++.+|+      .....+..+  .++
T Consensus       108 a~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~------~~~~~l~~a~~~l~  176 (291)
T 3mkr_A          108 ASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED------ATLTQLATAWVSLA  176 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHH
Confidence            5677888888888888877     788888888999999999999999999999998876      332333222  334


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ...|++++|+.+|++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            45589999999999999999999999999999999999999999999999999999933

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.80  E-value=2.2e-18  Score=125.86  Aligned_cols=134  Identities=13%  Similarity=0.156  Sum_probs=65.7

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh---------------
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE---------------   67 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------   67 (164)
                      .++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+......               
T Consensus       185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (450)
T 2y4t_A          185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  264 (450)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555554444211000               


Q ss_pred             -------------------------h----hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170           68 -------------------------A----RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        68 -------------------------~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  118 (164)
                                               .    ...+..+|.++...|++++|+.++++++..+|++..+++.+|.++...|+
T Consensus       265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  344 (450)
T 2y4t_A          265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM  344 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence                                     1    12333445555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhhCCCc
Q 031170          119 NAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       119 ~~~A~~~l~~~~~~~p~~  136 (164)
                      +++|+..+++++.+.|++
T Consensus       345 ~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          345 YDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHHHHHhCcch
Confidence            555555555555555554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.80  E-value=1.9e-19  Score=133.57  Aligned_cols=130  Identities=12%  Similarity=0.006  Sum_probs=117.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|++.|+++++.+|+++.++..+|.++..+|++++|+..++++++++|.      ...++..+|.++.
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~   85 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNM   85 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence            4778899999999999999999999999999999999999999999999999999999998      7889999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMI--YSLLDRNAEAKEEFA-----------KYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~A~~~l~-----------~~~~~~p~~  136 (164)
                      .+|++++|+.+|+++++.+|++..++..++.+  +...|++++|++.+.           +++...|..
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999999999999999999988  888899999999999           777777765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.80  E-value=5.3e-19  Score=108.25  Aligned_cols=100  Identities=10%  Similarity=0.045  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG  110 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  110 (164)
                      .++.+|.++...|++++|+..|+++++.+|+      +..+++.+|.++...|++++|+.+|++++..+|++..+++.+|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4778889999999999999999999999998      7888999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          111 MIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       111 ~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .++...|++++|+..+++++..+|.+
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           93 VSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            99999999999999999999998876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.79  E-value=1.7e-18  Score=128.93  Aligned_cols=130  Identities=12%  Similarity=0.075  Sum_probs=124.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++.
T Consensus       282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~  355 (537)
T 3fp2_A          282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence            3677889999999999999999999999999999999999999999999999999999998      6788999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++|+.++++++..+|++..++..+|.++...|++++|+..+++++...|.+
T Consensus       356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999999999999999999999999998776

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.79  E-value=8.9e-19  Score=108.10  Aligned_cols=104  Identities=9%  Similarity=0.003  Sum_probs=91.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh-hhhHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-ARDVRFIMAQIK   79 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~   79 (164)
                      +|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|....... ...++..+|.++
T Consensus        14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~   93 (127)
T 4gcn_A           14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF   93 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999987443211 245778899999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      ..+|++++|+.+|++++...|+ ++.
T Consensus        94 ~~~~~~~~A~~~~~kal~~~~~-~~~  118 (127)
T 4gcn_A           94 QKQNDLSLAVQWFHRSLSEFRD-PEL  118 (127)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcC-HHH
Confidence            9999999999999999998763 543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.79  E-value=1.3e-18  Score=121.83  Aligned_cols=97  Identities=18%  Similarity=0.132  Sum_probs=78.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.      ...++..+|.++..
T Consensus        28 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~  101 (327)
T 3cv0_A           28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------CHHHHHHHHHHHHH
Confidence            566778888899999999888888888888888888888888888999989888888887      56777788888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCch
Q 031170           82 QKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      .|++++|+.++++++...|.+..
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~  124 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQ  124 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTT
T ss_pred             cCCHHHHHHHHHHHHHhCCccHH
Confidence            88877777777776666555433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.78  E-value=2.4e-18  Score=105.34  Aligned_cols=97  Identities=18%  Similarity=0.130  Sum_probs=87.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+      ...++..+|.++..
T Consensus        24 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~la~~~~~   97 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999998      78899999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCch
Q 031170           82 QKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      .|++++|+.++++++..+|.+..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999998653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.78  E-value=8.3e-18  Score=126.87  Aligned_cols=127  Identities=13%  Similarity=0.080  Sum_probs=84.0

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++..|.      ...++..+|.++...|
T Consensus       348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g  421 (597)
T 2xpi_A          348 SLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ------FGPAWIGFAHSFAIEG  421 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC
Confidence            4445555555555555555555666666666666666677777777777766666665      4556666677777777


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++++|+.+|++++...|.+...+..++.++...|++++|+..|++++...|.+
T Consensus       422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  474 (597)
T 2xpi_A          422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD  474 (597)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            77777777777666666666666667777766777777777777776666665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.78  E-value=6.9e-18  Score=104.65  Aligned_cols=107  Identities=12%  Similarity=-0.030  Sum_probs=100.4

Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           23 AGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        23 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      ...|.++..++.+|.++...|++++|+..|++++..+|.      ...++..+|.++...|++++|+.++++++..+|.+
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence            356788999999999999999999999999999999998      78899999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170          103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ..+++.+|.++...|++++|+..+.+++...|.
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            999999999999999999999999999999887

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.78  E-value=2.3e-18  Score=120.19  Aligned_cols=135  Identities=14%  Similarity=0.125  Sum_probs=117.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPL------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      |.++...|++++|+..|.+++...+.      ...++..+|.++..+|++++|+.++++++++.+..+.......++..+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45678899999999999999997532      256899999999999999999999999999998755443345678899


Q ss_pred             HHHHHHc-cCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           76 AQIKFLQ-KNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        76 a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |.+|... |++++|+.+|++++...|..      ..++..+|.++..+|++++|+.+|++++...|.+
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            9999996 99999999999999988754      3467889999999999999999999999999887

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.78  E-value=1.9e-18  Score=114.02  Aligned_cols=116  Identities=10%  Similarity=0.064  Sum_probs=106.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF----------------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL   65 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   65 (164)
                      |..++..|+|++|+..|++++...|.++                .++..+|.++...|++++|+..++++++.+|.    
T Consensus        45 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----  120 (198)
T 2fbn_A           45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN----  120 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----
Confidence            6778899999999999999999999887                89999999999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHH
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK  123 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~  123 (164)
                        ...+++.+|.++...|++++|+.+|++++..+|.+..++..++.++...++..++.
T Consensus       121 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          121 --NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             --cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence              78899999999999999999999999999999999999999999998888777766

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.78  E-value=8.1e-18  Score=107.62  Aligned_cols=104  Identities=16%  Similarity=0.080  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------------------ccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEI------------------AEDGNKLKEARDVRFIMAQIKFLQKNVDEAL   89 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   89 (164)
                      ....+...|..++..|+|++|+..|.+++..                  .|.      ...++..+|.++...|++++|+
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK------NIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH------HHHHHHHHHHHHHhcCcHHHHH
Confidence            3567889999999999999999999999998                  343      5678889999999999999999


Q ss_pred             HHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           90 KSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        90 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .++++++..+|+++.+++.+|.++..+|++++|+..|.+++.++|.+.
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            999999999999999999999999999999999999999999999984

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.78  E-value=1.1e-17  Score=101.53  Aligned_cols=107  Identities=23%  Similarity=0.333  Sum_probs=87.2

Q ss_pred             CCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170           25 NPLS-FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        25 ~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      +|.. ..+++.+|.++...|++++|+..++++++..|.      ...++..+|.++...|++++|+.++++++...|.+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   77 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence            4544 677888888888888888888888888888876      567777888888888888888888888888888888


Q ss_pred             hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170          104 RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      ..++.+|.++...|++++|+..+.+++...|.+.
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA  111 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            8888888888888888888888888888888773

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.78  E-value=5.5e-19  Score=116.63  Aligned_cols=141  Identities=14%  Similarity=0.130  Sum_probs=114.5

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh----------hhhHHHH
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE----------ARDVRFI   74 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------~~~~~~~   74 (164)
                      ....|++++|.+.++......+.....+..+|.+++..|++++|+..|.++++..|.......          ...++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN   93 (198)
T ss_dssp             --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            455678888888887777767777888999999999999999999999999999887321000          0278889


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      +|.++...|++++|+.++++++..+|.+..+++.+|.++...|++++|+..|++++.+.|.+......+..
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998544444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.8e-18  Score=126.95  Aligned_cols=135  Identities=16%  Similarity=0.056  Sum_probs=84.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|..........++..+|.++..
T Consensus       345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             HHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence            44555566666666666666666666666666666666666666666666666666665521110002266666666666


Q ss_pred             ---ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 ---QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                         .|++++|+.++++++..+|++..++..+|.++...|++++|+..+++++...|.+
T Consensus       425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred             hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence               6666677666666666666666666666666666677777777777776666665

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.77  E-value=4.9e-18  Score=125.67  Aligned_cols=132  Identities=18%  Similarity=0.142  Sum_probs=125.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++.
T Consensus       310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~  383 (514)
T 2gw1_A          310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------APEVPNFFAEILT  383 (514)
T ss_dssp             HHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc------CHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999998      6889999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCch------hhhhHHHHHHh---cCCHHHHHHHHHHHHhhCCCcch
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFR------PYFCKGMIYSL---LDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~~~~~---~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ..|++++|+.++++++...|.+..      +++.+|.++..   .|++++|+..+++++...|.+..
T Consensus       384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  450 (514)
T 2gw1_A          384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ  450 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence            999999999999999999999866      89999999999   99999999999999999999843

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.77  E-value=4.7e-18  Score=101.42  Aligned_cols=107  Identities=12%  Similarity=0.123  Sum_probs=101.7

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Q 031170           24 GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN--  101 (164)
Q Consensus        24 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--  101 (164)
                      .+|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++...|++++|+.++++++...|.  
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~   74 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY   74 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence            36888999999999999999999999999999999998      6788999999999999999999999999999999  


Q ss_pred             CchhhhhHHHHHHhc-CCHHHHHHHHHHHHhhCCCc
Q 031170          102 DFRPYFCKGMIYSLL-DRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       102 ~~~~~~~~~~~~~~~-~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +..+++.+|.++... |++++|+.++.+++...|.+
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            999999999999999 99999999999999999876

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.77  E-value=2.5e-19  Score=132.38  Aligned_cols=137  Identities=11%  Similarity=0.056  Sum_probs=106.6

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---------hhhhhhHHHHHHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---------LKEARDVRFIMAQ   77 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~la~   77 (164)
                      ..+++++|+..|+.++...|....++..+|.+++..|+|++|+..|++++++.|....         ......++..+|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888888888888888888888888888888888888888887310         0001467778888


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      ++..+|++++|+.+|++++..+|++..+++.+|.++..+|++++|+..|++++.++|.+......+
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l  391 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  391 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            888888999998888888888888888888888888888888888888888888888874433333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.77  E-value=1.1e-17  Score=100.65  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC  108 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  108 (164)
                      +..++.+|.++...|++++|+..+++++..+|.      ...++..+|.++...|++++|+.++++++..+|.+..+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR   77 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence            456777777777777777777777777777776      56677777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          109 KGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +|.++...|++++|+..+++++...|.+
T Consensus        78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           78 KAAALEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            7777777777777777777777777776

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.77  E-value=1.1e-17  Score=102.67  Aligned_cols=103  Identities=14%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhh
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYF  107 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~  107 (164)
                      +++.+|.++...|++++|+..|+++++..|+...   ...+++.+|.++...|++++|+.+|++++..+|++   +.+++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY---TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            4566777777777777777777777777766211   01566677777777777777777777777777776   56677


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|.++...|++++|+..|++++...|++
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            77777777777777777777777777766

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.77  E-value=1.7e-17  Score=101.94  Aligned_cols=112  Identities=14%  Similarity=-0.012  Sum_probs=106.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++.
T Consensus        22 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~   95 (133)
T 2lni_A           22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------FIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------chHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999998      6889999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  118 (164)
                      ..|++++|+.++++++..+|.+..++..++.++...|+
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999987764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.77  E-value=1.7e-17  Score=110.50  Aligned_cols=105  Identities=15%  Similarity=0.217  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH----------------HHHHHHHccCHHHHHHH
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI----------------MAQIKFLQKNVDEALKS   91 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~   91 (164)
                      +++.++..|..++..|++++|+..|+++++.+|+      +..+++.                +|.++...|++++|+.+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            5677889999999999999999999999999998      7788888                99999999999999999


Q ss_pred             HHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           92 YQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        92 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      |++++..+|++..+++.+|.++...|++++|+..|++++.++|++..
T Consensus        77 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           77 YKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            99999999999999999999999999999999999999999999943

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.76  E-value=2e-17  Score=101.13  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=106.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++..
T Consensus        19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------YSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------CHHHHHHHHHHHHH
Confidence            677889999999999999999999999999999999999999999999999999999998      68889999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCH
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN  119 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  119 (164)
                      .|++++|+.++++++..+|.+..++..++.++...|++
T Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999988874

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.76  E-value=1.7e-18  Score=110.79  Aligned_cols=108  Identities=13%  Similarity=0.058  Sum_probs=97.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAG------------------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN   63 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   63 (164)
                      |..++..|+|++|+..|.+++..                  +|.+..++..+|.++...|++++|+..++++++++|.  
T Consensus        18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~--   95 (162)
T 3rkv_A           18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET--   95 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc--
Confidence            67889999999999999999999                  7777789999999999999999999999999999998  


Q ss_pred             hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc-hhhhhHHHHHHh
Q 031170           64 KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF-RPYFCKGMIYSL  115 (164)
Q Consensus        64 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~  115 (164)
                          ...+++.+|.++...|++++|+.+|++++..+|++. .+...++.+...
T Consensus        96 ----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           96 ----NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             ----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence                789999999999999999999999999999999988 545555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.76  E-value=3.5e-18  Score=108.27  Aligned_cols=97  Identities=10%  Similarity=-0.018  Sum_probs=52.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHhh-------cccc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPL-------SFE-----ALFENALLMDRCGEGEAVIKRLEEALEI-------AEDG   62 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~a~~~-------~~~~   62 (164)
                      |..++..|+|++|+..|++++..+|+       +..     +|.++|.++..+|+|++|+..+.+++++       +|+ 
T Consensus        18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-   96 (159)
T 2hr2_A           18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-   96 (159)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-
Confidence            34555666666666666666666666       222     5555555555555555555555555555       554 


Q ss_pred             chhhhhhhHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           63 NKLKEARDVR----FIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        63 ~~~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                           ...+|    +.+|.++..+|++++|+.+|+++++.+|++..
T Consensus        97 -----~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           97 -----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             -----hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence                 44444    55555555555555555555555555554444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.76  E-value=9.7e-18  Score=106.24  Aligned_cols=110  Identities=18%  Similarity=0.113  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch------hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK------LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE----   98 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----   98 (164)
                      ...+..+|..++..|+|++|+..|+++++++|+...      ......+|..+|.++..+|+|++|+.+|++++..    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456788999999999999999999999999998211      1112348899999999999999999999999999    


Q ss_pred             ---CCCCchhh----hhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           99 ---DPNDFRPY----FCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        99 ---~p~~~~~~----~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                         +|++..+|    +.+|.++..+|++++|+..|++++.+.|++..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence               99999999    99999999999999999999999999999843

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.76  E-value=6.3e-18  Score=104.84  Aligned_cols=95  Identities=19%  Similarity=0.186  Sum_probs=91.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.      ...++..+|.++.
T Consensus        15 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~   88 (137)
T 3q49_B           15 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999998      7889999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCC
Q 031170           81 LQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      ..|++++|+.+|++++..+|+
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChh
Confidence            999999999999999999887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.75  E-value=1.2e-17  Score=123.41  Aligned_cols=118  Identities=12%  Similarity=0.135  Sum_probs=108.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK   66 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   66 (164)
                      |..++..|+|++|+..|++++...|.+               ..++..+|.++..+|++++|+..++++++++|.     
T Consensus       275 G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----  349 (457)
T 1kt0_A          275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-----  349 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----
Confidence            677899999999999999999999998               689999999999999999999999999999998     


Q ss_pred             hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH
Q 031170           67 EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE  125 (164)
Q Consensus        67 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~  125 (164)
                       +..+++.+|.++..+|++++|+.+|++++..+|++..++..++.++...++++++...
T Consensus       350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             7899999999999999999999999999999999999999999999999999887654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.75  E-value=2.9e-18  Score=104.17  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             hcCCchHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            7 EMGKTQDARNVFEEILAG---NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ..|++++|+..|+++++.   +|+++.++..+|.++..+|++++|+..|+++++.+|+      +..++..+|.++...|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLG   75 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcC
Confidence            357888888888888888   5777888888888888888888888888888888887      6778888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhh
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYF  107 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~  107 (164)
                      ++++|+.++++++...|+++....
T Consensus        76 ~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           76 RYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHH
Confidence            888888888888888888766543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=9.1e-17  Score=100.48  Aligned_cols=113  Identities=16%  Similarity=0.169  Sum_probs=103.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           23 AGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        23 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      ...|.+...++.+|.++...|++++|+..|+++++..|+...   ...++..+|.++...|++++|+.++++++..+|.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence            456788999999999999999999999999999999987110   16788899999999999999999999999999999


Q ss_pred             chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170          103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ..+++.+|.++...|++++|+..+++++...|.+..
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  134 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV  134 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence            999999999999999999999999999999999843

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=2.4e-18  Score=119.59  Aligned_cols=130  Identities=15%  Similarity=0.107  Sum_probs=112.7

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+      ...++..+|.++.
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~   83 (281)
T 2c2l_A           10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999998      7889999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhh-------------------------------hHHHHHHhcCCHHHHHHHHHHH
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYF-------------------------------CKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~-------------------------------~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      ..|++++|+..|++++..+|++...+.                               .++.  ...|++++|++.++++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~a  161 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRN  161 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGG
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence            999999999999999998886532211                               1111  1257888999999999


Q ss_pred             HhhCCCcch
Q 031170          130 RQLSPKKFE  138 (164)
Q Consensus       130 ~~~~p~~~~  138 (164)
                      +...|.+..
T Consensus       162 l~~~p~~~~  170 (281)
T 2c2l_A          162 HEGHEDDGH  170 (281)
T ss_dssp             GTTTSCHHH
T ss_pred             hccccchhh
Confidence            999998743

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.75  E-value=2.2e-18  Score=122.75  Aligned_cols=129  Identities=14%  Similarity=0.032  Sum_probs=85.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF-----------------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK   64 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   64 (164)
                      |..++..|+|++|+..|++++...|++.                 .++..+|.++..+|+|++|+..++++++.+|.   
T Consensus       186 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---  262 (338)
T 2if4_A          186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---  262 (338)
T ss_dssp             HHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence            5678899999999999999999999887                 48999999999999999999999999999998   


Q ss_pred             hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH-HhcCCHHHHHHHHHHHHhhCCCc
Q 031170           65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY-SLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                         +..+++.+|.++..+|++++|+.+|++++..+|++..++..++.+. ...+..+++...|.+++...|.+
T Consensus       263 ---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          263 ---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             ---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence               7889999999999999999999999999999999999999988884 44677888999999999999887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.74  E-value=6.7e-17  Score=99.15  Aligned_cols=113  Identities=15%  Similarity=0.073  Sum_probs=99.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |.++...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|+++++.+|+...   ...+++.+|.+
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~la~~   85 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHH
Confidence            6788999999999999999999999999   79999999999999999999999999999998211   16788999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD  117 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  117 (164)
                      +...|++++|+.+|++++..+|++..+......+....+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            999999999999999999999998877666555544433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.74  E-value=1.4e-16  Score=95.62  Aligned_cols=106  Identities=12%  Similarity=0.060  Sum_probs=100.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++..
T Consensus        11 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~   84 (118)
T 1elw_A           11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHH
Confidence            677889999999999999999999999999999999999999999999999999999998      68889999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIY  113 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  113 (164)
                      .|++++|+.++++++..+|.+..++..++.+.
T Consensus        85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999999998888877764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.74  E-value=1.4e-17  Score=114.20  Aligned_cols=134  Identities=18%  Similarity=0.119  Sum_probs=115.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch--hhhhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK--LKEARD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~   70 (164)
                      +|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+++++++.......  ......
T Consensus        49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  128 (283)
T 3edt_B           49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK  128 (283)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            467889999999999999999987        4666778999999999999999999999999998411100  001577


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIE--------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      ++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..+++++...|
T Consensus       129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999998        666678899999999999999999999999998743

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=1.6e-16  Score=111.56  Aligned_cols=119  Identities=11%  Similarity=0.045  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhh-HHHHHHHHHHHccCHHHHH
Q 031170           12 QDARNVFEEILA-GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARD-VRFIMAQIKFLQKNVDEAL   89 (164)
Q Consensus        12 ~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~   89 (164)
                      ++|+..|++++. ..|++..+|..+|.++...|++++|...|+++++..|.      ... ++..+|.++...|++++|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~  154 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHH
Confidence            888999999988 68888888888888888889999999999999888886      444 7777888888888888888


Q ss_pred             HHHHHHHHhCCCCchhhhhHHHHHHh-cCCHHHHHHHHHHHHhhCCCc
Q 031170           90 KSYQELEIEDPNDFRPYFCKGMIYSL-LDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        90 ~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|++++...|.+...+...+.+... .|++++|+..|++++...|.+
T Consensus       155 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~  202 (308)
T 2ond_A          155 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            88888887777776666555544332 577777777777777777776

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.74  E-value=2.4e-16  Score=95.44  Aligned_cols=110  Identities=19%  Similarity=0.244  Sum_probs=103.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|.      ...++..+|.++..
T Consensus        16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~   89 (125)
T 1na0_A           16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHH
Confidence            677889999999999999999999999999999999999999999999999999999987      67888999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD  117 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  117 (164)
                      .|++++|+.++++++..+|.+..++..++.++...|
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999998887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.74  E-value=2.2e-17  Score=107.07  Aligned_cols=124  Identities=16%  Similarity=0.007  Sum_probs=109.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLM-DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      +|.++...|++++|+..|++++...| ++..+..++.+. ...++..+|+..++++++.+|+      +..+++.+|.++
T Consensus        46 la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~------~~~~~~~la~~~  118 (176)
T 2r5s_A           46 KADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD------NFELACELAVQY  118 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT------CHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence            46788999999999999999999999 888776666553 3334556789999999999998      789999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCC--chhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           80 FLQKNVDEALKSYQELEIEDPND--FRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      ...|++++|+.+|++++..+|..  ..++..++.++...|+.++|+..|++++.
T Consensus       119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999986  55899999999999999999999999875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=6.3e-17  Score=101.22  Aligned_cols=107  Identities=12%  Similarity=-0.018  Sum_probs=99.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      |..+...|++++|+..|++++...|++   ..++..+|.++...|++++|+..++++++..|.      ...++..+|.+
T Consensus        35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~  108 (148)
T 2dba_A           35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------DVKALYRRSQA  108 (148)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------CHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------CHHHHHHHHHH
Confidence            667889999999999999999999998   889999999999999999999999999999998      68899999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYS  114 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  114 (164)
                      +...|++++|+.+|++++..+|++..++..++.+..
T Consensus       109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            999999999999999999999999988877777654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=8.5e-17  Score=112.98  Aligned_cols=125  Identities=13%  Similarity=0.050  Sum_probs=110.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      |.++...|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.      ...++...+.+..
T Consensus       106 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~  179 (308)
T 2ond_A          106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH
Confidence            55677889999999999999999999987 8999999999999999999999999999887      4556665555543


Q ss_pred             H-ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           81 L-QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        81 ~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      . .|++++|+.+|++++..+|+++.+|..++.++...|++++|+..|++++..
T Consensus       180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3 699999999999999999999999999999999999999999999999985

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.73  E-value=2.7e-17  Score=118.47  Aligned_cols=135  Identities=16%  Similarity=0.057  Sum_probs=118.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPL-------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      +|.++...|++++|+.++++++...+.       ...++..+|.++...|++++|+.+++++++..+..+.......++.
T Consensus       149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  228 (383)
T 3ulq_A          149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY  228 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            467889999999999999999997443       3457899999999999999999999999999876544434456888


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEI-----ED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      .+|.+|..+|++++|+.++++++.     .+ |....++..+|.++...|++++|+.++++++.+.+.
T Consensus       229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999     45 677788999999999999999999999999988543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.73  E-value=3.6e-17  Score=117.78  Aligned_cols=131  Identities=11%  Similarity=0.037  Sum_probs=113.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-hhhhhhHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAG---NPL---SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKEARDVRFI   74 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~   74 (164)
                      |..+...|++++|+..|++++..   .|+   .+.++..+|.++...|++++|+.++++++++.+..+. ......++..
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            56788999999999999999987   333   4578999999999999999999999999999876543 2234567889


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCc------hhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPNDF------RPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      +|.++...|++++|+.+|++++...+...      .++..+|.++...|++++|+.++++++.+
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999998765443      47889999999999999999999999994

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.73  E-value=4.9e-17  Score=99.45  Aligned_cols=98  Identities=11%  Similarity=0.106  Sum_probs=44.8

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh-hhhhHHHHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK-EARDVRFIMAQIKFL   81 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~   81 (164)
                      .++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+++++++..|...... ....++..+|.++..
T Consensus        12 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~   91 (131)
T 1elr_A           12 NDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK   91 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555554444444444455555555555555555555544444311000 003344444444444


Q ss_pred             ccCHHHHHHHHHHHHHhCC
Q 031170           82 QKNVDEALKSYQELEIEDP  100 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p  100 (164)
                      .|++++|+.+|++++...|
T Consensus        92 ~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           92 EEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCC
T ss_pred             hccHHHHHHHHHHHHHhCC
Confidence            5555555555544444444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.73  E-value=3.9e-17  Score=111.96  Aligned_cols=127  Identities=21%  Similarity=0.183  Sum_probs=111.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------ccccch
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEI--------AEDGNK   64 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~   64 (164)
                      +|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+++++++.        .|.   
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---  167 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN---  167 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH---
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH---
Confidence            467899999999999999999998        4677888999999999999999999999999998        443   


Q ss_pred             hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------------------------------
Q 031170           65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED---------------------------------------------   99 (164)
Q Consensus        65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------------------------------------   99 (164)
                         ...++..+|.++...|++++|+.++++++...                                             
T Consensus       168 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (283)
T 3edt_B          168 ---VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC  244 (283)
T ss_dssp             ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred             ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence               56788899999999999999999999999752                                             


Q ss_pred             ----CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170          100 ----PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       100 ----p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                          |....++..+|.++...|++++|+.+++++++..
T Consensus       245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                3334567889999999999999999999998753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=2.1e-17  Score=114.96  Aligned_cols=135  Identities=20%  Similarity=0.152  Sum_probs=113.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc--chhhhhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGN--------PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG--NKLKEARD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~   70 (164)
                      +|.++...|++++|+.+|++++...        |....++..+|.++...|++++|+.+++++++.....  ........
T Consensus       117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  196 (311)
T 3nf1_A          117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK  196 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3678899999999999999999874        5567789999999999999999999999999982111  00011567


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------------------------------------CCC
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIE-------------------------------------------------DPN  101 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------------------------------------------~p~  101 (164)
                      ++..+|.++...|++++|+.++++++..                                                 .|.
T Consensus       197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  276 (311)
T 3nf1_A          197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT  276 (311)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch
Confidence            8889999999999999999999999974                                                 355


Q ss_pred             CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170          102 DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      ...++..+|.++...|++++|+.++++++.+.|.
T Consensus       277 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          277 VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            5677889999999999999999999999998775

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.72  E-value=4.9e-17  Score=114.20  Aligned_cols=133  Identities=14%  Similarity=0.083  Sum_probs=111.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPL--S----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      |.+|...|++++|+.+|++++...+.  +    ..++..+|.++.. |++++|+.+|++++.+.+..+.......++..+
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  161 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA  161 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            56788889999999999999987432  2    4578899999988 999999999999999987654333345678899


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCc------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           76 AQIKFLQKNVDEALKSYQELEIEDPNDF------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |.++..+|++++|+.+|++++...|...      ..++.+|.++...|++++|+..|++++ ..|..
T Consensus       162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            9999999999999999999998866543      366778888988999999999999999 88876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.72  E-value=6.1e-17  Score=116.54  Aligned_cols=135  Identities=15%  Similarity=-0.005  Sum_probs=118.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPL-------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      +|.++...|++++|+.++++++...+.       ...++..+|.++...|++++|+.++++++++.+..+.......++.
T Consensus       147 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  226 (378)
T 3q15_A          147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL  226 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            467889999999999999999987543       2456889999999999999999999999998765443333467788


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHH-----hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEI-----EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      .+|.+|..+|++++|+.++++++.     .+|....+++.+|.++...|++++|+.++++++.+.+.
T Consensus       227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999     77878888999999999999999999999999998665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=1.5e-16  Score=117.08  Aligned_cols=143  Identities=11%  Similarity=0.034  Sum_probs=117.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh--hhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG---------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK--EAR   69 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~   69 (164)
                      ||.++...|++++|++.|++++++         +|....++.++|.+|..+|++++|+.++++++++.+......  ..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            467889999999999999999875         677788899999999999999999999999999865422111  134


Q ss_pred             hHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh---cCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170           70 DVRFIMAQIKFL--QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL---LDRNAEAKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus        70 ~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      .++..+|.++..  .+++++|+.+|++++..+|+++.++..++.++..   .++.++|+..+++++.++|.+......+
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l  215 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL  215 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence            566667766654  4579999999999999999999999988887554   6778899999999999999984433333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.71  E-value=4.5e-17  Score=117.35  Aligned_cols=117  Identities=14%  Similarity=0.082  Sum_probs=86.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170            2 ARLLSEMGKTQDARNVFEEILA----------------GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL   65 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   65 (164)
                      |..++..|+|++|+..|++++.                ..|.+..++..+|.++..+|++++|+.+++++++++|.    
T Consensus       230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----  305 (370)
T 1ihg_A          230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS----  305 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch----
Confidence            5567777788888888888777                56666777777777777777777777777777777776    


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHH
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE  124 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~  124 (164)
                        ...+++.+|.++...|++++|+.+|++++..+|++..++..++.++...++.+++..
T Consensus       306 --~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          306 --NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              567777777777777777777777777777777777777777777776666665543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.71  E-value=3.9e-17  Score=103.18  Aligned_cols=135  Identities=15%  Similarity=0.038  Sum_probs=113.7

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSF------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      +|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.+++++++..+..+.......++..
T Consensus        15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   94 (164)
T 3ro3_A           15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS   94 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            36788899999999999999998765432      478899999999999999999999999988765444334667889


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      +|.++...|++++|+.++++++...+.      ....+..+|.++...|++++|+..+.+++.+...
T Consensus        95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999876432      2346788999999999999999999999887543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.71  E-value=5.2e-16  Score=98.80  Aligned_cols=105  Identities=14%  Similarity=0.052  Sum_probs=99.6

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhh
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYF  107 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  107 (164)
                      .+..+..+|.++...|++++|+..++++++..|.      ...++..+|.++...|++++|+.++++++..+|.+..+++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   85 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   85 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            3567899999999999999999999999999998      6889999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      .+|.++...|++++|+..+.+++...|.+..
T Consensus        86 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  116 (166)
T 1a17_A           86 RRAASNMALGKFRAALRDYETVVKVKPHDKD  116 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999843

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=4.7e-17  Score=113.14  Aligned_cols=132  Identities=13%  Similarity=0.052  Sum_probs=113.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc--chhhhhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG--NKLKEARD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~   70 (164)
                      +|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++......  ........
T Consensus        33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  112 (311)
T 3nf1_A           33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA  112 (311)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence            367889999999999999999994        67778899999999999999999999999999985211  00111467


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIED--------PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++..
T Consensus       113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88899999999999999999999999874        455677889999999999999999999999988

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.70  E-value=8.9e-16  Score=105.64  Aligned_cols=122  Identities=15%  Similarity=0.094  Sum_probs=104.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      +|.++...|++++|+.+|+++++  |+++.+++.+|.++..    .+++++|+.+|+++++.+        ...++..+|
T Consensus        12 lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg   81 (273)
T 1ouv_A           12 LGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHH
Confidence            36678888999999999999988  7888899999999999    999999999999998874        267788889


Q ss_pred             HHHHH----ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170           77 QIKFL----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        77 ~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p  134 (164)
                      .++..    .+++++|+.+|++++..  +++.+++.+|.++..    .+++++|+.++++++...+
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  145 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND  145 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence            89888    89999999999988876  477888888888888    8889999999998888764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.70  E-value=2.7e-16  Score=96.06  Aligned_cols=103  Identities=11%  Similarity=-0.013  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----
Q 031170           27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND----  102 (164)
Q Consensus        27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----  102 (164)
                      ..+..++.+|.++...|++++|+..++++++..|.      ...++..+|.++...|++++|+.++++++...|.+    
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence            34678999999999999999999999999999998      67889999999999999999999999999998876    


Q ss_pred             ---chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170          103 ---FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus       103 ---~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                         ..+++.+|.++...|++++|+..+++++...|+
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence               778999999999999999999999999999984

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.70  E-value=9.4e-17  Score=111.88  Aligned_cols=125  Identities=12%  Similarity=0.049  Sum_probs=117.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..+++++..+|+........+..+...++.++|+..+++++..+|+      +..+++.+|.++.
T Consensus       157 la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~  230 (287)
T 3qou_A          157 LAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLH  230 (287)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHH
Confidence            4778999999999999999999999987777777888888999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCC--chhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           81 LQKNVDEALKSYQELEIEDPND--FRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      ..|++++|+..|++++..+|++  ..++..++.++...|+.++|+..+++++.
T Consensus       231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999998  88899999999999999999999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.70  E-value=6.1e-17  Score=98.24  Aligned_cols=96  Identities=14%  Similarity=0.055  Sum_probs=84.7

Q ss_pred             HcCCcHHHHHHHHHHHhh---ccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170           41 RCGEGEAVIKRLEEALEI---AEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD  117 (164)
Q Consensus        41 ~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  117 (164)
                      .+|++++|+..|+++++.   +|.      ...++..+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG   75 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence            468999999999999999   576      78899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcchhhhH
Q 031170          118 RNAEAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus       118 ~~~~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      ++++|+..+++++...|.+.....+
T Consensus        76 ~~~~A~~~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           76 RYEQGVELLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            9999999999999999998444333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.70  E-value=7e-17  Score=102.12  Aligned_cols=92  Identities=20%  Similarity=0.188  Sum_probs=80.9

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG----------EAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      .+.+.|++|+..+++++..+|+++++|+.+|.++...+++          ++|+..|+++++++|+      ...+++.+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A~~~L   86 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEAVWCI   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHHHHHH
Confidence            4567899999999999999999999999999999998875          4999999999999998      78889999


Q ss_pred             HHHHHHcc-----------CHHHHHHHHHHHHHhCCCCc
Q 031170           76 AQIKFLQK-----------NVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        76 a~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~  103 (164)
                      |.+|..+|           ++++|+.+|++++.++|++.
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            99998875           78888888888888888764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.70  E-value=2.7e-16  Score=109.63  Aligned_cols=132  Identities=15%  Similarity=0.074  Sum_probs=98.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-chhhhhhhHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-NKLKEARDVRFI   74 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~   74 (164)
                      |.++...|++++|+..|++++...+..      ..++..+|.+|..+|++++|+.+++++++..... ........++..
T Consensus       122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n  201 (293)
T 3u3w_A          122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence            445666778889999999888854332      3367888888889999999999998888654322 111123557778


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCC-HHHHHHHHHHHHhhC
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDR-NAEAKEEFAKYRQLS  133 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~-~~~A~~~l~~~~~~~  133 (164)
                      +|.+|..+|++++|+.++++++...+..      ..+++.+|.++..+|+ +++|+..+++++.+.
T Consensus       202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            8889999999999999998888765432      4567888888888884 588999888888765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.69  E-value=2.6e-16  Score=109.37  Aligned_cols=105  Identities=12%  Similarity=-0.015  Sum_probs=101.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      |.++.++..+|.++...|++++|+..|+++++.+|.      ...++..+|.++...|++++|+..+++++..+|++..+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~   74 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   74 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence            677889999999999999999999999999999998      78899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++.+|.++...|++++|+..|.+++.+.|++
T Consensus        75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999998876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.69  E-value=7.9e-17  Score=113.15  Aligned_cols=134  Identities=10%  Similarity=0.053  Sum_probs=114.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      |.++...|++++|+..|.+++...+..      ..++..+|.++..+|++++|+.+|++++++.+..+.......++..+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456788899999999999999986532      45788999999999999999999999999977655443346778899


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           76 AQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |.+|.. |++++|+.+|++++...|..      ..++..+|.++..+|++++|+.+|++++.+.|..
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            999999 99999999999999987653      4567889999999999999999999999987654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.69  E-value=7.6e-16  Score=99.58  Aligned_cols=100  Identities=11%  Similarity=0.101  Sum_probs=93.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCc--HHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALL-MDRCGEG--EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      +|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++  ++|+..++++++.+|.      ...++..+|.
T Consensus        50 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~  123 (177)
T 2e2e_A           50 LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN------EITALMLLAS  123 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC------cHHHHHHHHH
Confidence            46788999999999999999999999999999999999 8899999  9999999999999998      7889999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFRPY  106 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  106 (164)
                      ++...|++++|+.+|++++..+|.+....
T Consensus       124 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          124 DAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            99999999999999999999999986543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.68  E-value=5.2e-16  Score=108.18  Aligned_cols=132  Identities=14%  Similarity=0.058  Sum_probs=83.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-hhhhhhHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKEARDVRFI   74 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~   74 (164)
                      |.++...|++++|+..+++++...+..      ..++..+|.++..+|++++|+.+++++++....... ......++..
T Consensus       122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            344556677777777777777654332      446677777777777777777777777743221110 0001246667


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHH-HHHHHHHHhhC
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEA-KEEFAKYRQLS  133 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A-~~~l~~~~~~~  133 (164)
                      +|.+|..+|++++|+.++++++...+.      ...+++.+|.++...|++++| ..++++++.+.
T Consensus       202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            777777777777777777777665322      134566777777777777777 66677776553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.68  E-value=3.5e-16  Score=102.79  Aligned_cols=135  Identities=13%  Similarity=0.155  Sum_probs=106.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILA------GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~   73 (164)
                      +|.++...|++++|+..+++++.      ..|....++..+|.++...|++++|+..++++++.....+ .......++.
T Consensus        32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  111 (203)
T 3gw4_A           32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY  111 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence            36678889999999999999988      4455667888999999999999999999999999844322 1112456677


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      .+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+..+.+++.+...
T Consensus       112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999988653322      123478899999999999999999999877543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.68  E-value=2.4e-16  Score=108.78  Aligned_cols=136  Identities=13%  Similarity=0.029  Sum_probs=116.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|+|++|.+.|+.++...|++. +.+.+|.++.+.++|++|+..|+++....+..    ....+++.+|.++..
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~----~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF----LAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc----cHHHHHHHHHHHHHH
Confidence            4678899999999999999999999998 99999999999999999999999776643210    014588999999999


Q ss_pred             ccCHHHHHHHHHHHHHhC--CC-CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170           82 QKNVDEALKSYQELEIED--PN-DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~--p~-~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      .|++++|+.+|++++...  |. ..++++.+|.++..+|+.++|+..|++++..+|. ......+
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            999999999999998653  44 5578999999999999999999999999999998 4444443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=9e-16  Score=112.85  Aligned_cols=126  Identities=19%  Similarity=0.150  Sum_probs=101.9

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc--
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ--   82 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~--   82 (164)
                      +...|++++|+.++++++..+|+++.++..+|.++...|++++|+..++++++..|+      ...++..+|.+|..+  
T Consensus       223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~y~~~~~  296 (472)
T 4g1t_A          223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN------NAYLHCQIGCCYRAKVF  296 (472)
T ss_dssp             C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999998      667777777776543  


Q ss_pred             -----------------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           83 -----------------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        83 -----------------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                                       +.+++|+..+++++..+|.+..++..+|.++...|++++|+..|++++.+.|.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence                             346778888888888888888888888888888888888888888888887765

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.68  E-value=5.9e-16  Score=92.13  Aligned_cols=99  Identities=14%  Similarity=0.107  Sum_probs=90.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|...    ...++..+|.++.
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~l~~~~~   87 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY----NKDVWAAKADALR   87 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT----CHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHH
Confidence            367888999999999999999999999999999999999999999999999999999988611    2678889999999


Q ss_pred             Hc-cCHHHHHHHHHHHHHhCCCCc
Q 031170           81 LQ-KNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        81 ~~-~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      .. |++++|+.++++++...|.++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           88 YIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHhCCHHHHHHHHHHHhhcccCCC
Confidence            99 999999999999999988764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.67  E-value=2.1e-15  Score=100.03  Aligned_cols=122  Identities=16%  Similarity=0.114  Sum_probs=101.3

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----------hhhhhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN----------KLKEARD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~   70 (164)
                      +|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|...          .......
T Consensus        43 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  122 (213)
T 1hh8_A           43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE  122 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH
Confidence            467889999999999999999999999999999999999999999999999999999887633          1111348


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      ++..+|.++...|++++|+.+|++++...|++..            +..++++..+.+.....|
T Consensus       123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~~a~~~~~~~~~~~~  174 (213)
T 1hh8_A          123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH------------SKIDKAMECVWKQKLYEP  174 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG------------GHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc------------chHHHHHHHHHhcccccc
Confidence            8899999999999999999999999999998643            334455555554444333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.67  E-value=7.3e-15  Score=102.38  Aligned_cols=133  Identities=13%  Similarity=0.044  Sum_probs=112.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      +..+...|+|++|++.+.+++...|....      .++.+|.++...|++++|+..++++++..+..........++..+
T Consensus        82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 2qfc_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            34577899999999999999998877543      356788999999999999999999999876544333335678899


Q ss_pred             HHHHHHccCHHHHHHHHHHHH---HhCCCCc----hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           76 AQIKFLQKNVDEALKSYQELE---IEDPNDF----RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~---~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      |.+|..+|++++|+.+|++++   ...|++.    .+++.+|.++...|++++|+.++++++.+.+
T Consensus       162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   5556533    5788999999999999999999999998754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.67  E-value=3.3e-16  Score=112.71  Aligned_cols=130  Identities=15%  Similarity=0.029  Sum_probs=110.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-hhhhhhHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNP------LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKEARDVRFI   74 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~   74 (164)
                      |..+...|++++|+..|++++...+      ....++..+|.++...|++++|+.+++++++..+.... ......++..
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            5667889999999999999998732      24568899999999999999999999999999876443 2224667789


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      +|.++...|++++|+.+|++++...+.      ...++..+|.++...|++++|+.++++++.
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999999986432      234678899999999999999999999999

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.66  E-value=2.6e-16  Score=113.80  Aligned_cols=136  Identities=13%  Similarity=0.005  Sum_probs=117.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFE------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      +|.++...|++++|+.++++++...|....      ++..+|.++...|++++|+..+++++...+..........++..
T Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  308 (411)
T 4a1s_A          229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS  308 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            367889999999999999999998765433      88999999999999999999999999998865443334678889


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++.+.+.-
T Consensus       309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999875543      3478899999999999999999999999998664

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=8.5e-15  Score=100.73  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH--
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL--   81 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~--   81 (164)
                      .+++++|+.+|++++..  +++.+++.+|.++..    .+++++|+.+|+++++.++        ..++..+|.++..  
T Consensus        91 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~a~~~lg~~~~~~~  160 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND--------GDGCTILGSLYDAGR  160 (273)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTS
T ss_pred             ccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHcCC
Confidence            55555555555555554  255555555555555    5555555555555555432        3445555555555  


Q ss_pred             --ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170           82 --QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        82 --~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p  134 (164)
                        .+++++|+.+|++++..  .++.+++.+|.++..    .+++++|+.++++++...|
T Consensus       161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence              55666666666665554  234555566666666    6666666666666665544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.66  E-value=2.1e-15  Score=108.64  Aligned_cols=120  Identities=16%  Similarity=0.138  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----------hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN----------KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ...+..+|..++..|++++|+..|+++++..+...          .......++..+|.++..+|++++|+.++++++..
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999999433210          01115788889999999999999999999999999


Q ss_pred             CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhh
Q 031170           99 DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLS  148 (164)
Q Consensus        99 ~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~  148 (164)
                      +|++..+++.+|.++..+|++++|+..|++++.+.|.+......+.....
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998544444444333

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.66  E-value=3.8e-16  Score=112.27  Aligned_cols=135  Identities=15%  Similarity=0.035  Sum_probs=116.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFE------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      +|.++...|++++|+.++++++...|....      ++..+|.++...|++++|+.+++++++..+..+.......++..
T Consensus       193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  272 (406)
T 3sf4_A          193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS  272 (406)
T ss_dssp             HHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHH
Confidence            367889999999999999999988665443      88999999999999999999999999998775444334677889


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      +|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++.+.+.
T Consensus       273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  339 (406)
T 3sf4_A          273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  339 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875543      457889999999999999999999999988543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.66  E-value=3e-16  Score=109.73  Aligned_cols=134  Identities=15%  Similarity=0.028  Sum_probs=104.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      |.++...|++++|+..+++++...|..      ..++..+|.++...|++++|+..++++++..+..........++..+
T Consensus       190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  269 (338)
T 3ro2_A          190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL  269 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            567788889999999999888775443      23788888899999999999999999888877644333336677788


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           76 AQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      |.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++.+.+.
T Consensus       270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            999999999999999998888765543      336778888888899999999999998887764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.65  E-value=5.7e-16  Score=111.37  Aligned_cols=131  Identities=12%  Similarity=0.041  Sum_probs=108.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      |.++...|++++|+..|++++...|+++    .++..+|.++...|++++|+.++++++...+..........++..+|.
T Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~   95 (406)
T 3sf4_A           16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   95 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            6778899999999999999999999884    578899999999999999999999998886543333334677788899


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCC--------------------HHHHHHHHHHHHh
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDR--------------------NAEAKEEFAKYRQ  131 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~--------------------~~~A~~~l~~~~~  131 (164)
                      ++...|++++|+.++++++...|..      ..++..+|.++...|+                    +++|+..+.+++.
T Consensus        96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~  175 (406)
T 3sf4_A           96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS  175 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888876653      3367788888888888                    8888888888877


Q ss_pred             h
Q 031170          132 L  132 (164)
Q Consensus       132 ~  132 (164)
                      +
T Consensus       176 ~  176 (406)
T 3sf4_A          176 L  176 (406)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.65  E-value=7.9e-15  Score=89.64  Aligned_cols=101  Identities=23%  Similarity=0.330  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK  109 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  109 (164)
                      .+++.+|.++...|++++|+..++++++..|.      ...++..+|.++...|++++|+.++++++...|.+...++.+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   75 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL   75 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            46888999999999999999999999999887      677888999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          110 GMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       110 ~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |.++...|++++|+..+.+++...|.+
T Consensus        76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           76 GNAYYKQGDYDEAIEYYQKALELDPRS  102 (136)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999987

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.65  E-value=9.2e-16  Score=110.89  Aligned_cols=132  Identities=12%  Similarity=0.076  Sum_probs=115.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      |..+...|++++|+..|++++...|+++    .++..+|.++...|++++|+..++++++.............++..+|.
T Consensus        55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  134 (411)
T 4a1s_A           55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN  134 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            5678899999999999999999999987    578999999999999999999999999985332222225788889999


Q ss_pred             HHHHccCHHHHHHHHHHHHHh------CCCCchhhhhHHHHHHhcCC-----------------HHHHHHHHHHHHhhC
Q 031170           78 IKFLQKNVDEALKSYQELEIE------DPNDFRPYFCKGMIYSLLDR-----------------NAEAKEEFAKYRQLS  133 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~-----------------~~~A~~~l~~~~~~~  133 (164)
                      ++...|++++|+.++++++..      .|....++..+|.++...|+                 +++|+.++.+++.+.
T Consensus       135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987      44556688999999999999                 999999999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.65  E-value=7.7e-15  Score=102.93  Aligned_cols=121  Identities=10%  Similarity=-0.004  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH----HHc---
Q 031170           12 QDARNVFEEILAGNPLSFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK----FLQ---   82 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~----~~~---   82 (164)
                      ++|+..++++|..+|++..+|...+.++...+  ++++++..+.+++..+|.      +..+|...+.+.    ...   
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHhcccc
Confidence            46666666666666666666666666666666  666666666666666666      556666555555    554   


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH--HHHHHHHHHHhhCCCcch
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA--EAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~A~~~l~~~~~~~p~~~~  138 (164)
                      +++++++.++.+++..+|++..+|..++.++...|.++  ++++.+.+++..+|.++.
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s  181 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS  181 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence            56666666666666666666666666666666666655  666666666666666633

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.65  E-value=2.2e-15  Score=105.29  Aligned_cols=132  Identities=11%  Similarity=0.026  Sum_probs=114.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      |..+...|++++|+..|++++...|+++    .++..+|.++...|++++|+..+++++...+..+.......++..+|.
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            6778999999999999999999999984    678899999999999999999999999885443333235678889999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCch------hhhhHHHHHHhcCC--------------------HHHHHHHHHHHHh
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFR------PYFCKGMIYSLLDR--------------------NAEAKEEFAKYRQ  131 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~--------------------~~~A~~~l~~~~~  131 (164)
                      ++...|++++|+.++++++...|....      ++..+|.++...|+                    +++|+..+.+++.
T Consensus        92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~  171 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS  171 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987665433      78899999999999                    9999999999887


Q ss_pred             hC
Q 031170          132 LS  133 (164)
Q Consensus       132 ~~  133 (164)
                      ..
T Consensus       172 ~~  173 (338)
T 3ro2_A          172 LV  173 (338)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.64  E-value=2e-15  Score=105.20  Aligned_cols=134  Identities=13%  Similarity=0.058  Sum_probs=109.7

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEA------LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      ..+...|++++|+..+++++...+..+..      +..+|.++...+++++|+.+++++++..+..........++..+|
T Consensus        83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg  162 (293)
T 3u3w_A           83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA  162 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            45678899999999999999988877662      335889999999999999999999997655433222345678999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhC-------CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           77 QIKFLQKNVDEALKSYQELEIED-------PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|..+|++++|+.+|++++...       +....+++.+|.++...|++++|+.++++++.+.+..
T Consensus       163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999531       1223478899999999999999999999999886543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.63  E-value=2.4e-14  Score=100.44  Aligned_cols=145  Identities=13%  Similarity=0.020  Sum_probs=128.0

Q ss_pred             chhhhhcC--CchHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---CCcHHHHHHHHHHHhhccccchhhhhhhHH
Q 031170            2 ARLLSEMG--KTQDARNVFEEILAGNPLSFEALFENALLM----DRC---GEGEAVIKRLEEALEIAEDGNKLKEARDVR   72 (164)
Q Consensus         2 a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   72 (164)
                      +.++...|  ++++++..+++++..+|.+..+|...+.++    ...   +++++++.++.++++.+|.      +..+|
T Consensus        74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW  147 (306)
T 3dra_A           74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVW  147 (306)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHH
Confidence            45666777  999999999999999999999999999999    778   8999999999999999999      88999


Q ss_pred             HHHHHHHHHccCHH--HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH------HHHHHHHHHHhhCCCcchhhhHhh
Q 031170           73 FIMAQIKFLQKNVD--EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA------EAKEEFAKYRQLSPKKFEVEGYLR  144 (164)
Q Consensus        73 ~~la~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~A~~~l~~~~~~~p~~~~~~~~~~  144 (164)
                      ...+.+....|.++  +++.++.+++..+|.+..+|..++.++...+...      ++++++.+++..+|.+.....+..
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~  227 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL  227 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence            99999999999999  9999999999999999999999999998876421      378899999999999965555555


Q ss_pred             hhhhhhhc
Q 031170          145 TPLSRMKL  152 (164)
Q Consensus       145 ~~~~~~~~  152 (164)
                      .++.....
T Consensus       228 ~ll~~~~~  235 (306)
T 3dra_A          228 GIHERFDR  235 (306)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhcCC
Confidence            56665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=5.2e-15  Score=111.87  Aligned_cols=132  Identities=14%  Similarity=0.078  Sum_probs=120.5

Q ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc-CHHH
Q 031170           11 TQDARNVFEEILAGNPLSFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-NVDE   87 (164)
Q Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~   87 (164)
                      ++++++.+++++..+|++..+|...+.++...+  ++++++..+.++++.+|.      +..+|...+.+....| .+++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW~~R~~~l~~l~~~~~~  162 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAE  162 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc------cccHHHHHHHHHHHcCCChHH
Confidence            999999999999999999999999999999999  669999999999999999      7899999999999999 9999


Q ss_pred             HHHHHHHHHHhCCCCchhhhhHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCcchhhhHhhhhhh
Q 031170           88 ALKSYQELEIEDPNDFRPYFCKGMIYSLL--------------DRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLS  148 (164)
Q Consensus        88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------------~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~  148 (164)
                      +++++.++++.+|.+..+|..++.++...              +.++++++++.+++..+|++.....+.+..+.
T Consensus       163 el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence            99999999999999999999999998875              55799999999999999999555445444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=4e-15  Score=99.28  Aligned_cols=124  Identities=19%  Similarity=0.184  Sum_probs=106.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG----EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      ||.++...+++++|+.+|+++++.  +++.+++.+|.++.. +    ++++|+.+|+++++.  .      .+.++..+|
T Consensus        24 lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g------~~~a~~~Lg   92 (212)
T 3rjv_A           24 LADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--G------SKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--T------CHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--C------CHHHHHHHH
Confidence            467788899999999999999874  688999999999888 6    899999999999764  3      477888999


Q ss_pred             HHHHH----ccCHHHHHHHHHHHHHhCC--CCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCCCc
Q 031170           77 QIKFL----QKNVDEALKSYQELEIEDP--NDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        77 ~~~~~----~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|..    .+++++|+.+|++++...|  ..+.+++.+|.+|..    .+++++|+.+|+++... |.+
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~  161 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT  161 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence            99987    8899999999999998877  348889999999998    88999999999999888 444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.62  E-value=6.3e-15  Score=88.84  Aligned_cols=86  Identities=13%  Similarity=0.015  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHH
Q 031170           12 QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKS   91 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~   91 (164)
                      ++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|.      ...++..+|.++...|++++|+.+
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999998      678889999999999999999999


Q ss_pred             HHHHHHhCCCCc
Q 031170           92 YQELEIEDPNDF  103 (164)
Q Consensus        92 ~~~~~~~~p~~~  103 (164)
                      |++++...|...
T Consensus        76 ~~~al~~~~~~~   87 (115)
T 2kat_A           76 WESGLAAAQSRG   87 (115)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHhccccc
Confidence            999998877543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.61  E-value=2e-14  Score=107.71  Aligned_cols=129  Identities=12%  Similarity=0.024  Sum_probs=106.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH-H
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF-EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI-K   79 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~-~   79 (164)
                      |..+...|++++|...|+++++..|.++ .+|..++.++...|++++|+..|+++++..|.      ....+...+.+ +
T Consensus       328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~a~~~~  401 (530)
T 2ooe_A          328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEY  401 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHHHHHHH
Confidence            4456678888889999999888888875 58888888888888888888888888887765      34444444444 3


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ...|++++|..+|+++++.+|+++..|..++.++...|+.++|...|++++...|.+
T Consensus       402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            468999999999999999999999999999999999999999999999999887665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.60  E-value=2.7e-14  Score=93.71  Aligned_cols=129  Identities=13%  Similarity=0.050  Sum_probs=104.7

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      ++..|++++|.+.++.+....+....++..+|.++...|++++|+..+++++......+.......++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            45689999999966655554346788999999999999999999999999999766544444457788899999999999


Q ss_pred             HHHHHHHHHHHHHh---CCCC----chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           85 VDEALKSYQELEIE---DPND----FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        85 ~~~A~~~~~~~~~~---~p~~----~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      +++|+.++++++..   .+++    ..++..+|.++...|++++|+..+.+++...
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            99999999999987   3422    3457889999999999999999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.60  E-value=2.3e-15  Score=95.18  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=85.1

Q ss_pred             HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCchhhhhH
Q 031170           40 DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV----------DEALKSYQELEIEDPNDFRPYFCK  109 (164)
Q Consensus        40 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~  109 (164)
                      .+.+.|++|+..++++++++|+      ...++..+|.++...+++          ++|+..|+++++++|+...+++.+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~L   86 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            3556799999999999999999      789999999999998875          599999999999999999999999


Q ss_pred             HHHHHhcC-----------CHHHHHHHHHHHHhhCCCcc
Q 031170          110 GMIYSLLD-----------RNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus       110 ~~~~~~~~-----------~~~~A~~~l~~~~~~~p~~~  137 (164)
                      |.+|...|           ++++|+.+|++++.++|++.
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            99999875           89999999999999999983

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.60  E-value=9.2e-16  Score=113.89  Aligned_cols=111  Identities=14%  Similarity=0.041  Sum_probs=101.0

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhh
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYF  107 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  107 (164)
                      .+.++..+|.++..+|++++|+..|+++++.+|.      ...++..+|.++..+|++++|+.++++++..+|++..+++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   78 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   78 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3455677888999999999999999999999998      7889999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR  144 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~  144 (164)
                      .+|.++..+|++++|+..++++++..|.+......+.
T Consensus        79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  115 (477)
T 1wao_1           79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  115 (477)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999999999999854443333

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.60  E-value=2.1e-14  Score=95.74  Aligned_cols=127  Identities=14%  Similarity=0.062  Sum_probs=111.1

Q ss_pred             chhhhhcC----CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            2 ARLLSEMG----KTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         2 a~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      |.+|.. +    ++++|+.+|+++..  ++++.+++.+|.++..    .+++++|+.+|+++++..+...    .+.++.
T Consensus        57 g~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~----~~~a~~  129 (212)
T 3rjv_A           57 AQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA----AVDAQM  129 (212)
T ss_dssp             HHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH----HHHHHH
T ss_pred             HHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc----hHHHHH
Confidence            456666 6    89999999999965  6899999999999998    8999999999999999887310    478999


Q ss_pred             HHHHHHHH----ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc-C-----CHHHHHHHHHHHHhhCCCc
Q 031170           74 IMAQIKFL----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL-D-----RNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        74 ~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~-----~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|.+|..    .+++++|+.+|++++.. |.++.+++.+|.+|... |     ++++|+.+|+++.......
T Consensus       130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~  201 (212)
T 3rjv_A          130 LLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT  201 (212)
T ss_dssp             HHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence            99999999    89999999999999998 78888999999999873 4     8999999999999886544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=3.1e-14  Score=107.69  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=122.2

Q ss_pred             hcCCc-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            7 EMGKT-QDARNVFEEILAGNPLSFEALFENALLMDRCGE----------GEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         7 ~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      ..|++ ++|++.+++++..+|++..+|...+.++...|+          +++++..+.++++.+|+      +..+|...
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK------~y~aW~hR  113 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHR  113 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHH
Confidence            34554 578999999999999999999999999999998          99999999999999999      89999999


Q ss_pred             HHHHHHcc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC-CHHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170           76 AQIKFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD-RNAEAKEEFAKYRQLSPKKFEVEGYLRTPL  147 (164)
Q Consensus        76 a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~  147 (164)
                      +.+....+  +|++++.++.++++.+|++..+|..++.++...| .++++++++.+++..+|.++....+...++
T Consensus       114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll  188 (567)
T 1dce_A          114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL  188 (567)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHH
Confidence            99999999  7899999999999999999999999999999999 899999999999999999954444443333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.59  E-value=1.9e-15  Score=107.67  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh-----------hhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170           25 NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL-----------KEARDVRFIMAQIKFLQKNVDEALKSYQ   93 (164)
Q Consensus        25 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~   93 (164)
                      .+.....+..+|.+++..|+|++|+..|++++...|.....           .....++..+|.++..+|+|++|+.+++
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34456789999999999999999999999999998872100           0001378899999999999999999999


Q ss_pred             HHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170           94 ELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEG  141 (164)
Q Consensus        94 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~  141 (164)
                      +++..+|++..+++.+|.++..+|++++|+..|++++.+.|.+.....
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~  302 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR  302 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999999999999999999999999999999844333

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.59  E-value=5.2e-14  Score=105.45  Aligned_cols=123  Identities=12%  Similarity=0.072  Sum_probs=111.0

Q ss_pred             cCCch-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh-hhHHHHHHHH
Q 031170            8 MGKTQ-------DARNVFEEILA-GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA-RDVRFIMAQI   78 (164)
Q Consensus         8 ~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~   78 (164)
                      .|+++       +|+.+|+++++ ..|+++.+|..+|.++...|++++|...|+++++..|.      . ..+|..+|.+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~  365 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKF  365 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS------CHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc------CchHHHHHHHHH
Confidence            68887       99999999997 79999999999999999999999999999999999887      3 3588899999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHH-HHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMI-YSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +...|++++|+..|++++...|.....+...+.+ +...|+.++|+..|+++++..|++
T Consensus       366 ~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~  424 (530)
T 2ooe_A          366 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  424 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence            9999999999999999999988877776666655 335899999999999999999988

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.58  E-value=7.4e-14  Score=99.19  Aligned_cols=126  Identities=13%  Similarity=0.090  Sum_probs=72.8

Q ss_pred             hhhcC-CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            5 LSEMG-KTQDARNVFEEILAGNPLSFEALFENALLMDRC-G-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         5 ~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      +...| .+++++..+++++..+|.+..+|...+.++... + ++++++.++.++++.+|.      +..+|...+.+...
T Consensus        98 L~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk------Ny~AW~~R~wvl~~  171 (349)
T 3q7a_A           98 LTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK------NYHTWAYLHWLYSH  171 (349)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT------CHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence            33444 355555555555555555555555555555554 4 555555555555555555      45555555555555


Q ss_pred             ccCHH--------HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC-------HHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVD--------EALKSYQELEIEDPNDFRPYFCKGMIYSLLDR-------NAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~--------~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~A~~~l~~~~~~~p~~  136 (164)
                      .|.++        ++++++.+++..+|.+..+|..++.++...+.       ++++++++.+++..+|.+
T Consensus       172 l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n  241 (349)
T 3q7a_A          172 FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN  241 (349)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            55554        56666666666666666666666666655554       456666666666666666

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.58  E-value=9.7e-16  Score=91.44  Aligned_cols=94  Identities=9%  Similarity=-0.066  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND-----  102 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----  102 (164)
                      ++.++..+|.++...|++++|+..|+++++.+|.      ...++..+|.++...|++++|+.++++++..+|++     
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            4567888888888888888888888888888887      67788888888888888888888888888888887     


Q ss_pred             -chhhhhHHHHHHhcCCHHHHHHHHH
Q 031170          103 -FRPYFCKGMIYSLLDRNAEAKEEFA  127 (164)
Q Consensus       103 -~~~~~~~~~~~~~~~~~~~A~~~l~  127 (164)
                       ..+++.+|.++...|++++|+..++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence             6677777887777776666655443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.57  E-value=2.2e-13  Score=96.30  Aligned_cols=136  Identities=13%  Similarity=0.043  Sum_probs=121.4

Q ss_pred             hhcCCch-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            6 SEMGKTQ-DARNVFEEILAGNPLSFEALFENALLMDRCGE----------GEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         6 ~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      ...|+++ +|+..+.+++..+|++..+|...+.++...+.          +++++.++..++..+|.      +..+|..
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW~h  113 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHH  113 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence            3566776 89999999999999999999999999887776          68999999999999999      8999999


Q ss_pred             HHHHHHHcc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC-HHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170           75 MAQIKFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR-NAEAKEEFAKYRQLSPKKFEVEGYLRTPL  147 (164)
Q Consensus        75 la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~l~~~~~~~p~~~~~~~~~~~~~  147 (164)
                      .+.+....+  ++++++.++.+++..+|.+..+|..++.++...|. ++++++++.+++..+|.++....+...++
T Consensus       114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll  189 (331)
T 3dss_A          114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL  189 (331)
T ss_dssp             HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            999999999  49999999999999999999999999999999998 59999999999999999955444444333

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.57  E-value=5e-14  Score=100.83  Aligned_cols=134  Identities=13%  Similarity=-0.002  Sum_probs=95.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      |.++...|++++|+..+++++...|....     ++..+|.++...|++++|+..+++++...+..+.......++..+|
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            45667778888888888888887765422     4667788888888888888888888887765443322334456778


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCC--------CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDP--------NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      .++...|++++|+.++++++...+        .....+..+|.++...|++++|..++.+++...|.
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            888888888888888888776542        12234556777777788888888888888777665

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.56  E-value=1.1e-13  Score=98.29  Aligned_cols=137  Identities=11%  Similarity=0.052  Sum_probs=122.6

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc-c-
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-K-   83 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-~-   83 (164)
                      ..+..++|++.+++++..+|++..+|...+.++...| .+++++..+.+++..+|+      +..+|...+.+.... + 
T Consensus        66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~hR~wlL~~l~~~  139 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWHHRLLLLDRISPQ  139 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHCCS
T ss_pred             hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCC
Confidence            4455679999999999999999999999999999999 599999999999999999      899999999999988 7 


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH--------HHHHHHHHHHhhCCCcchhhhHhhhhhhh
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA--------EAKEEFAKYRQLSPKKFEVEGYLRTPLSR  149 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--------~A~~~l~~~~~~~p~~~~~~~~~~~~~~~  149 (164)
                      ++++++.++.+++..+|++..+|..++.++...|.++        ++++.+.+++..+|.++....+...++..
T Consensus       140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999988887        99999999999999995544444444333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.56  E-value=1.3e-13  Score=97.42  Aligned_cols=128  Identities=15%  Similarity=0.086  Sum_probs=116.8

Q ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC-HHH
Q 031170           11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGE--GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN-VDE   87 (164)
Q Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~   87 (164)
                      +++++..++.++..+|.+..+|...+.++...++  +++++.++.++++.+|.      +..+|...+.+....|. +++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW~~R~~vl~~l~~~~~e  163 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAE  163 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCcCHHH
Confidence            7899999999999999999999999999999995  89999999999999999      78999999999999998 699


Q ss_pred             HHHHHHHHHHhCCCCchhhhhHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170           88 ALKSYQELEIEDPNDFRPYFCKGMIYSLL--------------DRNAEAKEEFAKYRQLSPKKFEVEGYLR  144 (164)
Q Consensus        88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------------~~~~~A~~~l~~~~~~~p~~~~~~~~~~  144 (164)
                      ++.++.+++..+|.+..+|..++.++...              +.++++++++.+++..+|++.....|..
T Consensus       164 el~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r  234 (331)
T 3dss_A          164 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR  234 (331)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999998886              4588999999999999999944433333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.56  E-value=5.5e-14  Score=80.79  Aligned_cols=85  Identities=21%  Similarity=0.229  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170           27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY  106 (164)
Q Consensus        27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  106 (164)
                      .++.+++.+|.++...|++++|+..++++++..|.      ...++..+|.++...|++++|+.++++++..+|.+..++
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~   80 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK   80 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence            45778899999999999999999999999999887      678888999999999999999999999999999999999


Q ss_pred             hhHHHHHHhcC
Q 031170          107 FCKGMIYSLLD  117 (164)
Q Consensus       107 ~~~~~~~~~~~  117 (164)
                      ..+|.++...|
T Consensus        81 ~~l~~~~~~~g   91 (91)
T 1na3_A           81 QNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99988887654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.56  E-value=8.8e-16  Score=91.61  Aligned_cols=94  Identities=12%  Similarity=0.185  Sum_probs=81.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+.........++..+|.++.
T Consensus        10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~   89 (111)
T 2l6j_A           10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999984222222677888999999


Q ss_pred             HccCHHHHHHHHHH
Q 031170           81 LQKNVDEALKSYQE   94 (164)
Q Consensus        81 ~~~~~~~A~~~~~~   94 (164)
                      ..|+++.|+..+++
T Consensus        90 ~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           90 AVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHCCCCCSSSSSS
T ss_pred             HHHhHhhhHhHHHH
Confidence            99988887766654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.50  E-value=2.1e-13  Score=97.57  Aligned_cols=133  Identities=11%  Similarity=-0.030  Sum_probs=109.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh--hhhhhHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL--KEARDVRF   73 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~   73 (164)
                      |.++...|++++|+..+++++...|...      .++..+|.++...|++++|+..+++++...+.....  .....++.
T Consensus        60 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  139 (373)
T 1hz4_A           60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR  139 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence            5677889999999999999998765432      336789999999999999999999999987542221  11345667


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCc-----hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPNDF-----RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      .+|.++...|++++|..++++++...+...     ..+..+|.++...|++++|...+.+++...+
T Consensus       140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999877532     3567889999999999999999999987743

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.50  E-value=5.7e-13  Score=93.13  Aligned_cols=132  Identities=13%  Similarity=-0.004  Sum_probs=103.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNP--LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      +|.++...|++++|++++.+.+..+|  ++.+++..++.++..+|+.+.|.+.++++.+.+|+...........+.-|++
T Consensus       106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v  185 (310)
T 3mv2_B          106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYI  185 (310)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHH
Confidence            36788899999999999999999987  8899999999999999999999999999999888100000023333344555


Q ss_pred             HHHcc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           79 KFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        79 ~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      .+..|  ++.+|..+|+++....|........+. ++..+|++++|...++.+++..
T Consensus       186 ~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          186 KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Confidence            77667  999999999999888776222222233 8999999999999999888774

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.49  E-value=1.2e-13  Score=83.11  Aligned_cols=85  Identities=19%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH
Q 031170           46 EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE  125 (164)
Q Consensus        46 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~  125 (164)
                      ++|+..|+++++.+|.      ...++..+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+..
T Consensus         2 ~~a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            2 QAITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             CCHHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4688999999999998      7889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCc
Q 031170          126 FAKYRQLSPKK  136 (164)
Q Consensus       126 l~~~~~~~p~~  136 (164)
                      |++++...|..
T Consensus        76 ~~~al~~~~~~   86 (115)
T 2kat_A           76 WESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhcccc
Confidence            99999998865

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.49  E-value=1.4e-13  Score=81.02  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=60.3

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           24 GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        24 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      .+|+++.+++.+|.++...|++++|+..|+++++.+|+      ...++..+|.++...|++++|+.+|++++...|..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            46888888888999988999999999999999988888      67788888999999999999999888888875543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.48  E-value=5.5e-14  Score=82.33  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=34.3

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhh-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARD-VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY  106 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  106 (164)
                      ..|.++...|++++|+..++++++.+|.      ... ++..+|.++...|++++|+.+|++++..+|++..++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            3444555555555555555555555554      344 445555555555555555555555555555554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.47  E-value=4.3e-13  Score=76.94  Aligned_cols=77  Identities=17%  Similarity=0.238  Sum_probs=71.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++.+|.      ...++..+|.++.
T Consensus        15 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~   88 (91)
T 1na3_A           15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH
Confidence            3678889999999999999999999999999999999999999999999999999999998      6888889999887


Q ss_pred             Hcc
Q 031170           81 LQK   83 (164)
Q Consensus        81 ~~~   83 (164)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.46  E-value=1.7e-13  Score=80.17  Aligned_cols=88  Identities=18%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      |.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|+      ...++..      
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~------   74 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD------SPALQAR------   74 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------STHHHHH------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHH------
Confidence            56788899999999999999999999999 9999999999999999999999999999988      4544432      


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                        +.+.+++.+|++++..+|.+.
T Consensus        75 --~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 --KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             --HHHHHHHHHHCCTTHHHHCCS
T ss_pred             --HHHHHHHHHHHHHhccCcccc
Confidence              667888888888877777654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.42  E-value=5.9e-12  Score=93.49  Aligned_cols=115  Identities=12%  Similarity=0.049  Sum_probs=81.5

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH----
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL----   81 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----   81 (164)
                      +++++|+.+|+++++.  +++.+++.+|.++...|   ++++|+.+|+++++..        ++.++..+|.+|..    
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~  379 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--------EKAAQFNLGNALLQGKGV  379 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSS
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCC
Confidence            5666666666666553  34556666666666544   5566666666666552        36677788888888    


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p~  135 (164)
                      .+++++|+.+|++++..  .++.+++.+|.+|..    .+++++|+.+|++++...|+
T Consensus       380 ~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          380 KKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            78888888888888775  357778888888887    78888888888888888744

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.42  E-value=5.8e-12  Score=78.47  Aligned_cols=113  Identities=14%  Similarity=0.090  Sum_probs=100.7

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH----cc
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL----QK   83 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~~   83 (164)
                      .+++++|+.+|+++.+..  ++.+.  +|.+|...+..++|+.+|+++.+..        ++.++..+|.+|..    .+
T Consensus         8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--------~~~a~~~Lg~~y~~G~g~~~   75 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACELN--------SGNGCRFLGDFYENGKYVKK   75 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSSSCC
T ss_pred             ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHcCCCCCc
Confidence            457899999999999876  44444  9999999999999999999999973        47899999999999    89


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p  134 (164)
                      ++++|+.+|+++.+.  .++.+.+.+|.+|..    .++.++|+.+|+++.....
T Consensus        76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999999999986  778999999999999    8999999999999988753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.41  E-value=3e-12  Score=80.42  Aligned_cols=106  Identities=14%  Similarity=0.053  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND------  102 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------  102 (164)
                      ..++..+|.++...|++++|+.+++++++..+..........++..+|.++...|++++|+.++++++...+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            45788999999999999999999999999987644333334678899999999999999999999999875443      


Q ss_pred             chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170          103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                      ..++..+|.++...|++++|+..+++++...+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44678899999999999999999999987743

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.40  E-value=1.4e-11  Score=91.45  Aligned_cols=113  Identities=11%  Similarity=-0.032  Sum_probs=65.1

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH--
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL--   81 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~--   81 (164)
                      .+++++|+.+|+++.+.  +++.+++.+|.+|..    .+++++|+.+|+++.+..        ++.++..+|.+|..  
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~  125 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--------LPQAQQNLGVMYHEGN  125 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCC
Confidence            56666666666666554  456666666666666    666666666666665542        24455555555555  


Q ss_pred             --ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhh
Q 031170           82 --QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        82 --~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~  132 (164)
                        .+++++|+.+|+++...  .++.+++.+|.+|..    .+++++|+.+|+++...
T Consensus       126 g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          126 GVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence              55556666665555543  345555555555554    45555555555555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.39  E-value=5.5e-12  Score=93.04  Aligned_cols=117  Identities=13%  Similarity=0.101  Sum_probs=61.2

Q ss_pred             chhhhhcC---CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            2 ARLLSEMG---KTQDARNVFEEILAGNPLSFEALFENALLMDRC----GEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         2 a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      |.+|...|   ++++|+.+|+++....|.....++.+|.+|...    +++++|+.+|+++.   |.      ++.+++.
T Consensus       183 g~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g------~~~a~~~  253 (452)
T 3e4b_A          183 ATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG------YPASWVS  253 (452)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG------STHHHHH
T ss_pred             HHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC------CHHHHHH
Confidence            33444455   555566666655555555555555555555433    45555555555554   33      3455555


Q ss_pred             HHHH-H--HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC-----CHHHHHHHHHHHH
Q 031170           75 MAQI-K--FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD-----RNAEAKEEFAKYR  130 (164)
Q Consensus        75 la~~-~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~A~~~l~~~~  130 (164)
                      +|.+ +  ...+++++|+.+|+++...  .++.+++.+|.+|. .|     ++++|+.+|+++.
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            5555 2  3445555555555555532  34555555555554 33     5555555555554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.37  E-value=2.5e-12  Score=75.63  Aligned_cols=69  Identities=26%  Similarity=0.442  Sum_probs=66.1

Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +..+++.+|.++...|++++|+.+|++++..+|++..+++.+|.++...|++++|+..+++++.+.|..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            678999999999999999999999999999999999999999999999999999999999999987765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.37  E-value=2.8e-12  Score=95.35  Aligned_cols=130  Identities=7%  Similarity=-0.081  Sum_probs=103.5

Q ss_pred             hhhhcCCchHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhh-hhhHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAG-----NPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKE-ARDVRF   73 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~-~~~~~~   73 (164)
                      .+...|+|++|+..+++++..     .|+++   ..+.++|.+|..+|+|++|+.++++++.+....- ...+ ....+.
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            356789999999999999985     34454   4688999999999999999999999998752211 0111 355667


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh-----CCCCc---hhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIE-----DPNDF---RPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      .+|.+|..+|++++|+..|++++.+     .|+++   ...-.++.++..++.+++|...|.++....
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999875     45554   345678888889999999999999987654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.37  E-value=9e-12  Score=87.11  Aligned_cols=126  Identities=8%  Similarity=-0.018  Sum_probs=104.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPL------SFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      ++++..+|+.+.|.+.++++.+.+|+      .......-+++.+.+|  ++.+|...|+++.+..|+      ......
T Consensus       143 vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~------~~~~~l  216 (310)
T 3mv2_B          143 IEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT------WKTQLG  216 (310)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS------HHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC------cccHHH
Confidence            57889999999999999999999983      3334444466677777  999999999999888875      223333


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh----------CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIE----------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .++ ++..+|++++|...++.+++.          +|+++..+.+++.+....|+  +|.+++.++....|++
T Consensus       217 Lln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          217 LLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             HHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             HHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence            334 899999999999999987776          48899999888888888897  8999999999999999

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.36  E-value=7.6e-12  Score=91.00  Aligned_cols=131  Identities=10%  Similarity=0.072  Sum_probs=89.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF-----------------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK   64 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   64 (164)
                      |+.+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|+.++.++++..+....
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            4567889999999999999999888653                 35788999999999999999999999988765433


Q ss_pred             hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      ......+...++.++...|++++|+.++++++...+.      ....+..+|.++...|++++|...+++++..
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            2222233444555555666666666666665543221      1234455666666666666666666665544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.34  E-value=1.9e-11  Score=90.11  Aligned_cols=110  Identities=14%  Similarity=0.197  Sum_probs=93.1

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc--
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALL-M--DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK--   83 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~--   83 (164)
                      +++++|+.+|+++.   |+++.+++.+|.+ +  ...+++++|+.+|+++++.+        +..+++.+|.+|. .|  
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--------~~~A~~~Lg~~y~-~G~g  298 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--------QPRAELLLGKLYY-EGKW  298 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH-HCSS
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHH-cCCC
Confidence            78999999999987   8899999999988 4  57889999999999998754        3678888998888 55  


Q ss_pred             ---CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 031170           84 ---NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        84 ---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~  133 (164)
                         ++++|+.+|+++.   |.++.+++.+|.+|..    ..++++|+.+|+++....
T Consensus       299 ~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          299 VPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence               9999999999988   8888899999988877    448899999999987754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.32  E-value=5.9e-11  Score=68.86  Aligned_cols=73  Identities=18%  Similarity=0.187  Sum_probs=64.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170           25 NPLSFEALFENALLMDRCGE---GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        25 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      +|++++++..+|.++...++   .++|...++++++.+|+      +..+...+|..++..|+|++|+.++++++..+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            68899999999998876665   68999999999999998      8899999999999999999999999999999888


Q ss_pred             Cc
Q 031170          102 DF  103 (164)
Q Consensus       102 ~~  103 (164)
                      ++
T Consensus        76 ~~   77 (93)
T 3bee_A           76 NL   77 (93)
T ss_dssp             TC
T ss_pred             Cc
Confidence            43

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.31  E-value=3.6e-12  Score=92.72  Aligned_cols=135  Identities=13%  Similarity=0.095  Sum_probs=111.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFE------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI   74 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   74 (164)
                      ||.+|...|++++|++++.+++...+....      +...++.++...|++++|+.++++++...+..........++..
T Consensus        61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (434)
T 4b4t_Q           61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK  140 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            467899999999999999999987655422      35567888888999999999999999987655443334677889


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      +|.++...|+|++|+.++++++.....      ....+...+.++...|++++|...+++++...+.
T Consensus       141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            999999999999999999998875322      2457888999999999999999999999887544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.29  E-value=7.2e-11  Score=84.12  Aligned_cols=120  Identities=18%  Similarity=0.164  Sum_probs=95.5

Q ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CcHHHHHHHHHHH------hhccccchhhhhhhHHHHHHHHH
Q 031170           10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCG----EGEAVIKRLEEAL------EIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~------~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      +..+|+.+|+++++.+|+++.++-.++.++....    ........+..++      ..+|.      .+.++..++..+
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~------~a~~~~alal~~  287 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN------LSIIYQIKAVSA  287 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc------CHHHHHHHHHHH
Confidence            4589999999999999999999998888775321    1112222222222      23344      577777888889


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ...|++++|+..+++++..+|+ ...+..+|.++...|++++|++.+.+++.++|..
T Consensus       288 l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          288 LVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999864 5677899999999999999999999999999987

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.27  E-value=3.2e-12  Score=88.30  Aligned_cols=120  Identities=12%  Similarity=0.036  Sum_probs=83.0

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHH-------HHH-----------------------------------------
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFEN-------ALL-----------------------------------------   38 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~-----------------------------------------   38 (164)
                      ..++++.|.+.|.+++..+|+.+++|.++       +.+                                         
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            47899999999999999999999999977       444                                         


Q ss_pred             --------------HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 031170           39 --------------MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND--  102 (164)
Q Consensus        39 --------------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--  102 (164)
                                    +...|+|++|...|..++...|.      .. +.+.+|.+++..++|++|+.+|+.+....++.  
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~  170 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA  170 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence                          44455555555555555554444      33 56666667777777777777776554432111  


Q ss_pred             chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170          103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ..+++.+|.++..+|++++|+..|.+++...
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            2367778888888888888888888887443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.23  E-value=3.1e-10  Score=71.10  Aligned_cols=98  Identities=22%  Similarity=0.205  Sum_probs=82.5

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhc-cccchhhhhhhHHHHHHHHHHHccC
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIA-EDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      .....+.+.|.+.+..+|.+.++.+.+|+++.+.+   +.++++.+|+.+++.+ |..     ..++++.+|..+++.|+
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-----~rd~lY~LAv~~~kl~~   86 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-----QRDYVFYLAVGNYRLKE   86 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-----HHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-----hHHHHHHHHHHHHHccC
Confidence            34567788888888888899999999999999988   6669999999999988 621     47888999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      |++|.++++.+++..|++..+....-.
T Consensus        87 Y~~A~~y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           87 YEKALKYVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            999999999999999988775544433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.18  E-value=4.9e-10  Score=69.64  Aligned_cols=88  Identities=10%  Similarity=0.003  Sum_probs=79.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      ||.+|...+.+++|+.+|+++.+.  +++.+++.+|.+|..    .+++++|+.+|+++.+..        ++.+...+|
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--------~~~a~~~Lg  100 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--------DQDGCLILG  100 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--------CHHHHHHHH
Confidence            356777888899999999999886  789999999999999    899999999999999873        478899999


Q ss_pred             HHHHH----ccCHHHHHHHHHHHHHh
Q 031170           77 QIKFL----QKNVDEALKSYQELEIE   98 (164)
Q Consensus        77 ~~~~~----~~~~~~A~~~~~~~~~~   98 (164)
                      .+|..    .+++++|+.+|+++.+.
T Consensus       101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          101 YKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            99999    99999999999999986

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.15  E-value=1.1e-10  Score=85.08  Aligned_cols=113  Identities=10%  Similarity=-0.057  Sum_probs=78.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|..+...|.|++|+.+|.++        ..|..+|.++.++|++++|++.++++     .      ++..|...+.+..
T Consensus       128 IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~------~~~~Wk~v~~aCv  188 (449)
T 1b89_A          128 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----N------STRTWKEVCFACV  188 (449)
T ss_dssp             ---------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----T------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----C------CchhHHHHHHHHH
Confidence            356677778888888888766        35777788888888888888888877     1      2566777777777


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ..|+|+.|..+..+++ .+|+.   ...++.+|...|++++|+.++++++.+++..
T Consensus       189 ~~~ef~lA~~~~l~L~-~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          189 DGKEFRLAQMCGLHIV-VHADE---LEELINYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             HTTCHHHHHHTTTTTT-TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             HcCcHHHHHHHHHHHH-hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence            7888888877666522 44443   3356778888999999999999999999877

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.13  E-value=6.4e-10  Score=64.44  Aligned_cols=69  Identities=10%  Similarity=-0.065  Sum_probs=64.9

Q ss_pred             hhhHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           68 ARDVRFIMAQIKFLQKN---VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++.++..+|.+++..++   .++|...+++++..+|+++.+++.+|..++..|++++|+.++++++...|.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            57889999999987766   7999999999999999999999999999999999999999999999999984

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.12  E-value=1.6e-09  Score=63.99  Aligned_cols=83  Identities=19%  Similarity=0.103  Sum_probs=68.5

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY  106 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  106 (164)
                      ++.-++.+|..++..++|..|+..|++|++..+.... ......++..+|.+++.+|++++|+.++++++...|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            4566889999999999999999999999997543211 111467888999999999999999999999999999998877


Q ss_pred             hhHH
Q 031170          107 FCKG  110 (164)
Q Consensus       107 ~~~~  110 (164)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            6666

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.12  E-value=1.3e-09  Score=88.67  Aligned_cols=119  Identities=16%  Similarity=0.114  Sum_probs=98.0

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-------------chh--
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-------------NKL--   65 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~--   65 (164)
                      +|+++...|++++|++.|.++     +++..+..+|.++.+.|+|++|+.+|..+.+..+..             +..  
T Consensus      1111 LAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A         1111 LAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH
Confidence            477889999999999999775     888999999999999999999999999988776442             000  


Q ss_pred             ------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170           66 ------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus        66 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                            ..+...+..+|..++..|+|++|+.+|.++        ..|..++.++.++|++++|++.+.++...
T Consensus      1186 le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1186 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence                  002334557899999999999999999885        47788999999999999999999998443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.04  E-value=2.1e-09  Score=67.32  Aligned_cols=91  Identities=12%  Similarity=0.068  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCchhhhhHHHHHHhcCCHH
Q 031170           46 EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK---NVDEALKSYQELEIED-P-NDFRPYFCKGMIYSLLDRNA  120 (164)
Q Consensus        46 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~~~~~~~~~~~~~  120 (164)
                      ..+...|.+.+..++.      ...+.+.+|.++...+   +.++++..++.+++.+ | ++.+.+|.+|..+.++|+++
T Consensus        15 ~~~~~~y~~e~~~~~~------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~   88 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   88 (152)
T ss_dssp             HHHHHHHHHHHHTTCC------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHccCCC------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence            4556667777776665      6889999999999988   7789999999999998 7 56889999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcchhhhH
Q 031170          121 EAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus       121 ~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      +|+.++++++++.|++.+....
T Consensus        89 ~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           89 KALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHH
Confidence            9999999999999999554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.03  E-value=1.1e-09  Score=80.39  Aligned_cols=92  Identities=5%  Similarity=-0.033  Sum_probs=69.1

Q ss_pred             hcCCchHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhh-hhhHHHHHH
Q 031170            7 EMGKTQDARNVFEEILAG-----NPLSFE---ALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKE-ARDVRFIMA   76 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~-----~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~-~~~~~~~la   76 (164)
                      ..|+|++|+..+++++.+     .|+++.   .+.++|.+|..+|+|++|+.++++++.+....- ...+ ....+..+|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999999998874     455544   577889999999999999999999988742110 0000 245566889


Q ss_pred             HHHHHccCHHHHHHHHHHHHHh
Q 031170           77 QIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      .+|..+|++++|+..|++++.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHH
Confidence            9999999999999999998875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.01  E-value=2.3e-09  Score=73.82  Aligned_cols=86  Identities=13%  Similarity=0.005  Sum_probs=49.9

Q ss_pred             chHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH-c
Q 031170           11 TQDARNVFEEILAGNPL--SFEALFENALLMDRC-----GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-Q   82 (164)
Q Consensus        11 ~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~   82 (164)
                      ...|...++++++++|+  +..+|..+|.+|...     |+.++|..+|+++++++|+.     +...++..|..+.. +
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----~id~~v~YA~~l~~~~  253 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----DPDHHITYADALCIPL  253 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----CSHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHhc
Confidence            34556666666666666  444666666666553     56666666666666666641     15555555665555 3


Q ss_pred             cCHHHHHHHHHHHHHhCCC
Q 031170           83 KNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~  101 (164)
                      |++++|..++++++...|.
T Consensus       254 gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          254 NNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TCHHHHHHHHHHHHHCCGG
T ss_pred             CCHHHHHHHHHHHHcCCCC
Confidence            6666666666666665544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.00  E-value=2e-08  Score=69.21  Aligned_cols=109  Identities=11%  Similarity=0.050  Sum_probs=90.4

Q ss_pred             cCCCCHHHHHHHHHHHHH-----cCC------cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc-----cCHHH
Q 031170           24 GNPLSFEALFENALLMDR-----CGE------GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-----KNVDE   87 (164)
Q Consensus        24 ~~p~~~~~~~~la~~~~~-----~~~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~   87 (164)
                      .+|+++++++..|.+...     .|.      ...|...++++++++|+-.    ...++..+|.+|...     |+.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~----~GsA~~~LG~lY~~vPp~~gGd~ek  222 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ----EGAVWNVLTKFYAAAPESFGGGMEK  222 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH----HHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc----cCHHHHHHHHHHHhCCCccCCCHHH
Confidence            457778877766654422     233      3578999999999999832    366899999999995     99999


Q ss_pred             HHHHHHHHHHhCCCC-chhhhhHHHHHHh-cCCHHHHHHHHHHHHhhCCCc
Q 031170           88 ALKSYQELEIEDPND-FRPYFCKGMIYSL-LDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        88 A~~~~~~~~~~~p~~-~~~~~~~~~~~~~-~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |..+|++++.++|+. ..+++..|..+.. .|+.+++.+++++++...|..
T Consensus       223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999999975 9999999999888 599999999999999998874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.98  E-value=5.2e-10  Score=81.66  Aligned_cols=119  Identities=13%  Similarity=-0.020  Sum_probs=97.1

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      ||.++...|+|++|++.++++     +++.+|...+.++...|+++.|..+..+ +...|+         -...+..+|.
T Consensus       154 LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---------~l~~lv~~Ye  218 (449)
T 1b89_A          154 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---------ELEELINYYQ  218 (449)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---------HHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---------hHHHHHHHHH
Confidence            478899999999999999999     5789999999999999999999777665 335554         2335788999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh--cCCHHHHHHHHHHHHhhCC
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL--LDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~A~~~l~~~~~~~p  134 (164)
                      +.|.+++|+.++++++..++.+..++..+|.++.+  .++..+.++.|...+.+.|
T Consensus       219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            99999999999999999999988888888888877  4555666666665555555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.97  E-value=2.1e-08  Score=77.38  Aligned_cols=134  Identities=7%  Similarity=-0.092  Sum_probs=97.6

Q ss_pred             hhhhhcCCchHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch----------------h
Q 031170            3 RLLSEMGKTQDAR-NVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK----------------L   65 (164)
Q Consensus         3 ~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------~   65 (164)
                      +.+...|+.++|. .+|++++...|.+...|...+.+....|+++.|...|++++...+....                .
T Consensus       351 ~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~  430 (679)
T 4e6h_A          351 NYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK  430 (679)
T ss_dssp             HHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence            4456678888997 9999999999999999999999999999999999999999986321000                0


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCchhhhhHHHHHHhcC-CHHHHHHHHHHHHhhCCCc
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIE-DPNDFRPYFCKGMIYSLLD-RNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~-~~~~A~~~l~~~~~~~p~~  136 (164)
                      .....+|...+......|+.+.|...|.++++. .+.....+...+.+....+ +.+.|..+|..+++..|.+
T Consensus       431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~  503 (679)
T 4e6h_A          431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD  503 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence            012446777777777778888888888888776 3334455555555555544 4778888888888877776

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.97  E-value=1.6e-08  Score=78.02  Aligned_cols=128  Identities=11%  Similarity=-0.053  Sum_probs=104.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhc-----------CCC-----------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-
Q 031170            2 ARLLSEMGKTQDARNVFEEILAG-----------NPL-----------SFEALFENALLMDRCGEGEAVIKRLEEALEI-   58 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~-----------~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-   58 (164)
                      +......|++++|..+|++++..           .|.           ...+|...+.+....|..+.|...|.+|++. 
T Consensus       385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~  464 (679)
T 4e6h_A          385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK  464 (679)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            34556789999999999999875           253           3457888888888899999999999999987 


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           59 AEDGNKLKEARDVRFIMAQIKFLQK-NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        59 ~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      .+.      ...++...|.+....+ +++.|.+.|+.+++..|+++..|...+......|+.+.|..+|++++...|.
T Consensus       465 ~~~------~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          465 KLV------TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             GGS------CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             CCC------ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            333      3556667777776664 5899999999999999999988888888888889999999999999998874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.95  E-value=6.3e-09  Score=77.44  Aligned_cols=98  Identities=13%  Similarity=-0.014  Sum_probs=78.4

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccch-hhh-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCc---h
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKE-ARDVRFIMAQIKFLQKNVDEALKSYQELEIE-----DPNDF---R  104 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~  104 (164)
                      .+..+..+|+|++|+..+++++++....-. ..+ ....+..+|.+|..+|+|++|+.++++++..     .|+++   .
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            344567899999999999999997533211 111 3556678999999999999999999999875     34443   4


Q ss_pred             hhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170          105 PYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      .+.++|.+|..+|++++|+.++++++.+
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.95  E-value=7.3e-09  Score=84.40  Aligned_cols=112  Identities=10%  Similarity=-0.089  Sum_probs=69.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...|+|++|+.+|.++        ..|..+|.++.+.|++++|++.++++.           +..+|...+.....
T Consensus      1202 Gd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~-----------n~~aWkev~~acve 1262 (1630)
T 1xi4_A         1202 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-----------STRTWKEVCFACVD 1262 (1630)
T ss_pred             HHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----------CHHHHHHHHHHHhh
Confidence            45566666666666666664        356666666666666666666666661           23455555555555


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|++..|..+... +..+|+   .+..++..|...|.+++|+.++++++.++|.+
T Consensus      1263 ~~Ef~LA~~cgl~-Iiv~~d---eLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A         1263 GKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred             hhHHHHHHHHHHh-hhcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence            5555555555543 222233   33366777777888888888888888888766

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.92  E-value=6.3e-09  Score=76.29  Aligned_cols=94  Identities=11%  Similarity=-0.072  Sum_probs=71.6

Q ss_pred             hhhcCCchHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhh-hhhHHHH
Q 031170            5 LSEMGKTQDARNVFEEILAG-----NPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKE-ARDVRFI   74 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~-~~~~~~~   74 (164)
                      +...|+|++|+..+++++..     .|+++   ..+..+|.+|..+|+|++|+.++++++.+....- ...+ ....+..
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            45678999999999999875     34454   4577888999999999999999999998742110 0000 2455668


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHh
Q 031170           75 MAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        75 la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      +|.+|..+|++++|+..|++++.+
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHH
Confidence            999999999999999999998875

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.90  E-value=8.2e-09  Score=60.93  Aligned_cols=70  Identities=9%  Similarity=0.003  Sum_probs=60.2

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGN-------PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      ||..++..|+|+.|+.+|+.+++..       +..+.++..+|.++.++|++++|+.+++++++..|+      +..+..
T Consensus        11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~   84 (104)
T 2v5f_A           11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE------HQRANG   84 (104)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHh
Confidence            4788999999999999999999863       346788999999999999999999999999999998      455544


Q ss_pred             HHH
Q 031170           74 IMA   76 (164)
Q Consensus        74 ~la   76 (164)
                      .++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.90  E-value=6.2e-09  Score=76.37  Aligned_cols=94  Identities=12%  Similarity=0.080  Sum_probs=74.6

Q ss_pred             HHcCCcHHHHHHHHHHHhhccccc-hhhh-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCc---hhhhhH
Q 031170           40 DRCGEGEAVIKRLEEALEIAEDGN-KLKE-ARDVRFIMAQIKFLQKNVDEALKSYQELEIE-----DPNDF---RPYFCK  109 (164)
Q Consensus        40 ~~~~~~~~A~~~~~~a~~~~~~~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~~  109 (164)
                      ...|+|++|+..+++++.+....- ...+ ....+..+|.+|..+|+|++|+.++++++..     .|+++   ..+.++
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            346789999999999999753211 1111 2456668999999999999999999999875     34444   457899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC
Q 031170          110 GMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       110 ~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      |.+|..+|++++|+.++++++.+.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHH
Confidence            999999999999999999998873

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.83  E-value=1e-07  Score=57.72  Aligned_cols=97  Identities=23%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHH---HHHHHHHHHhhc-cccchhhhhhhHHHHHHHHHHHccCH
Q 031170           10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEA---VIKRLEEALEIA-EDGNKLKEARDVRFIMAQIKFLQKNV   85 (164)
Q Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~   85 (164)
                      ....+.+.|.+.+...+.+.++.+.+|+++........   ++.+++..++.. |..     ....++.+|..+++.|+|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-----~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-----QRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-----HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHhhhH
Confidence            34566777887877778888999999999998887776   888888888876 421     467888899999999999


Q ss_pred             HHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           86 DEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        86 ~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      ++|..+++.+++..|.+..+.-....
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999988776544433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.81  E-value=4.8e-08  Score=71.65  Aligned_cols=96  Identities=8%  Similarity=-0.115  Sum_probs=76.2

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhhccccc-hhh-hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCc---hhh
Q 031170           37 LLMDRCGEGEAVIKRLEEALEIAEDGN-KLK-EARDVRFIMAQIKFLQKNVDEALKSYQELEIE-----DPNDF---RPY  106 (164)
Q Consensus        37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~  106 (164)
                      .-+..+|+|++|+..+++++.+....- ... .....+..+|.+|..+|+|++|+.++++++..     .|+++   ..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            345678999999999999998743211 111 02456668999999999999999999999875     24443   457


Q ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170          107 FCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       107 ~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      +.+|.+|..+|++++|+.++++++.+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999877

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.69  E-value=1.5e-06  Score=53.92  Aligned_cols=113  Identities=11%  Similarity=-0.015  Sum_probs=92.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCc------HHHHHHHHHHHhhccccchhh--hhhhHHHHHHHHHHHccCHHHHHHHHHH
Q 031170           23 AGNPLSFEALFENALLMDRCGEG------EAVIKRLEEALEIAEDGNKLK--EARDVRFIMAQIKFLQKNVDEALKSYQE   94 (164)
Q Consensus        23 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~   94 (164)
                      -..|++++.|........+.|+.      +.-++.|++++..-|......  .....|...|.. ...+|.++|...|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35799999999999999989999      889999999999887754221  123444555644 566999999999999


Q ss_pred             HHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           95 LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        95 ~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ++.........|...|..-..+|+...|...+.+++.+.|..
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            998877777788888888888999999999999999999987

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.63  E-value=4e-07  Score=65.05  Aligned_cols=76  Identities=9%  Similarity=-0.018  Sum_probs=69.3

Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170           22 LAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        22 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      +...|.++.++..++..+...|++++|+..+++++.++|+       ...+..+|.++...|++++|+..|++++.++|.
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3567999999999999999999999999999999999975       667789999999999999999999999999998


Q ss_pred             Cch
Q 031170          102 DFR  104 (164)
Q Consensus       102 ~~~  104 (164)
                      ...
T Consensus       343 ~~t  345 (372)
T 3ly7_A          343 ANT  345 (372)
T ss_dssp             HHH
T ss_pred             cCh
Confidence            753

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.53  E-value=3.5e-07  Score=57.79  Aligned_cols=56  Identities=16%  Similarity=0.040  Sum_probs=39.3

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFE---------ALFENALLMDRCGEGEAVIKRLEEALEIA   59 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~   59 (164)
                      .+...|.|+.|+-....++....++++         ++..+|..++.+++|..|...|+++++..
T Consensus        29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            355667788888887776665433322         56677888888888888888888877654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.47  E-value=1.6e-06  Score=52.49  Aligned_cols=92  Identities=12%  Similarity=0.050  Sum_probs=74.3

Q ss_pred             CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCchhhhhHHHHHHhcCC
Q 031170           44 EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE---ALKSYQELEIED-P-NDFRPYFCKGMIYSLLDR  118 (164)
Q Consensus        44 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~~~~~~~~~~~  118 (164)
                      ....+...|.+.+..++.      ...+.+.+|+++....+...   ++..++.++..+ | ...+.++.+|..+.++|+
T Consensus        16 ~l~~~~~~y~~e~~~~~~------s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~   89 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccCCC------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence            344556667777666554      57888999999988776655   999999999886 5 466789999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcchhhh
Q 031170          119 NAEAKEEFAKYRQLSPKKFEVEG  141 (164)
Q Consensus       119 ~~~A~~~l~~~~~~~p~~~~~~~  141 (164)
                      +++|+.+++.+++..|.+.+...
T Consensus        90 Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           90 YEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999954433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.40  E-value=1.7e-05  Score=59.22  Aligned_cols=122  Identities=16%  Similarity=0.109  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh------------------------
Q 031170           12 QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE------------------------   67 (164)
Q Consensus        12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------------   67 (164)
                      +....+|++++...|..+.+|+..+..+...|+.++|...|++++.. |.......                        
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~  274 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA  274 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence            45678999999999999999999999999999999999999999999 87532110                        


Q ss_pred             ----------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CchhhhhHHHHHHhcC-CHHHHHHHHHHHHhhCCC
Q 031170           68 ----------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN-DFRPYFCKGMIYSLLD-RNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        68 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~-~~~~A~~~l~~~~~~~p~  135 (164)
                                ...+|...+......++.+.|...|+++ . .|. ....+...+.+....+ +.+.|...|+.+++..|+
T Consensus       275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence                      1123444455555678899999999999 4 343 3344555555555444 699999999999999887


Q ss_pred             c
Q 031170          136 K  136 (164)
Q Consensus       136 ~  136 (164)
                      .
T Consensus       353 ~  353 (493)
T 2uy1_A          353 S  353 (493)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.39  E-value=5.8e-06  Score=61.70  Aligned_cols=119  Identities=13%  Similarity=0.068  Sum_probs=81.7

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH----------------------------------------HHHc
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALL----------------------------------------MDRC   42 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~----------------------------------------~~~~   42 (164)
                      ..+...|+.++|..+|++++.. |.+...+...+..                                        ..+.
T Consensus       221 ~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~  299 (493)
T 2uy1_A          221 EYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK  299 (493)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence            3456678888889999988888 8875554433322                                        2235


Q ss_pred             CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH
Q 031170           43 GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE  121 (164)
Q Consensus        43 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  121 (164)
                      +..+.|...|+++ + .|..     ...++...|.+.+..+ +.+.|...|+.+++..|+++..+...+......|+.+.
T Consensus       300 ~~~~~AR~i~~~A-~-~~~~-----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~  372 (493)
T 2uy1_A          300 RGLELFRKLFIEL-G-NEGV-----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEEN  372 (493)
T ss_dssp             HCHHHHHHHHHHH-T-TSCC-----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHHHHh-h-CCCC-----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence            5677788888888 3 3321     2345555666666666 58889999999888888877766666666666777777


Q ss_pred             HHHHHHHH
Q 031170          122 AKEEFAKY  129 (164)
Q Consensus       122 A~~~l~~~  129 (164)
                      |...+.++
T Consensus       373 aR~l~er~  380 (493)
T 2uy1_A          373 ARALFKRL  380 (493)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            77777776

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.31  E-value=1.3e-05  Score=50.70  Aligned_cols=101  Identities=12%  Similarity=0.120  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC-
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED---PN-  101 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~-  101 (164)
                      -.+++.-...+...|.|+.|+-....++....++..   +.....+...+|+.++.+++|.+|...|++++...   ++ 
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            345666677888999999999999998887644222   22235577899999999999999999999986531   11 


Q ss_pred             ---------------------CchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170          102 ---------------------DFRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus       102 ---------------------~~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                                           +.+..+.++.|+...+++++|+..++.+
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                                 1256789999999999999999998765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.25  E-value=5.6e-05  Score=56.55  Aligned_cols=123  Identities=7%  Similarity=-0.033  Sum_probs=97.8

Q ss_pred             CCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170            9 GKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE   87 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   87 (164)
                      +..++|.++|+++.... +-+...+..+...+.+.|++++|..+|++..+..-..     +...+..+-..+.+.|++++
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-----d~~tyn~lI~~~~~~g~~~~  158 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-----RLRSYGPALFGFCRKGDADK  158 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ccceehHHHHHHHHCCCHHH
Confidence            44688999999988764 2366788999999999999999999999988754210     25566677888999999999


Q ss_pred             HHHHHHHHHHhCC-CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh--CCCc
Q 031170           88 ALKSYQELEIEDP-NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL--SPKK  136 (164)
Q Consensus        88 A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~--~p~~  136 (164)
                      |.+.|++.....- -+...+..+...+...|+.++|.++|++....  .|+.
T Consensus       159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~  210 (501)
T 4g26_A          159 AYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK  210 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence            9999999887532 24556777888899999999999999998654  4444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.24  E-value=8.5e-05  Score=45.73  Aligned_cols=78  Identities=13%  Similarity=0.057  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCcH---HHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           26 PLSFEALFENALLMDRCGEGE---AVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        26 p~~~~~~~~la~~~~~~~~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      .-.+++.+.+|+++......+   +++.+++..++..|..     ....++.+|..+++.|+|.+|..+.+.+++..|++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-----~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-----hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            345677777777777776554   5677777777766632     35666777777777777777777777777777777


Q ss_pred             chhhhh
Q 031170          103 FRPYFC  108 (164)
Q Consensus       103 ~~~~~~  108 (164)
                      ..+.-.
T Consensus       111 ~QA~~L  116 (144)
T 1y8m_A          111 KQVGAL  116 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            654433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.22  E-value=3.6e-05  Score=46.78  Aligned_cols=79  Identities=15%  Similarity=0.094  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHHHHcCCcH---HHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           28 SFEALFENALLMDRCGEGE---AVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      .+++.+.+|+++++....+   +++.+++..++.+|..     ....++.+|..+++.|+|++|..+.+.++...|++..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            5677888888888777553   5788888888777632     3677778888888888888888888888888888876


Q ss_pred             hhhhHHH
Q 031170          105 PYFCKGM  111 (164)
Q Consensus       105 ~~~~~~~  111 (164)
                      +.-....
T Consensus       114 A~~Lk~~  120 (134)
T 3o48_A          114 VGALKSM  120 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.17  E-value=0.0003  Score=52.62  Aligned_cols=128  Identities=11%  Similarity=0.014  Sum_probs=97.6

Q ss_pred             hhhhcCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGE---------GEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~---------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      .+.+.|+.++|+++|+++.... +-+...|..+..++...+.         .+.|..+|++.....-..     +...+.
T Consensus        35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-----d~~tyn  109 (501)
T 4g26_A           35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-----NEATFT  109 (501)
T ss_dssp             HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-----CHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-----CHHHHH
Confidence            4568899999999999998753 2255667777666665544         578999999887754210     256677


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh--CCCc
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL--SPKK  136 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~--~p~~  136 (164)
                      .+-..+.+.|++++|...|++..... +-+...+..+...+...|+.++|.+.+......  .|+.
T Consensus       110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~  175 (501)
T 4g26_A          110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE  175 (501)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence            88889999999999999999987753 234566777788889999999999999998765  4444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=98.16  E-value=5.3e-05  Score=59.07  Aligned_cols=121  Identities=10%  Similarity=0.052  Sum_probs=87.2

Q ss_pred             cCC-chHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcC-CcHHHHHHHHHHHhhc-------cccchh-----hhhhhH
Q 031170            8 MGK-TQDARNVFEEILAGNPLSFEALFENALLMD--RCG-EGEAVIKRLEEALEIA-------EDGNKL-----KEARDV   71 (164)
Q Consensus         8 ~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~~~-~~~~A~~~~~~a~~~~-------~~~~~~-----~~~~~~   71 (164)
                      .++ ++.|++.++++...+|.... ++..+.+..  ..+ +--+|+..+.+.++..       +.....     ......
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            344 57899999999999997643 333333322  222 2346788888777531       111000     001234


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           72 RFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      +...+.....+|+++-|+.+.++++...|.....|+.++.+|..+|+++.|+-.++.+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4456777889999999999999999999999999999999999999999999998877

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.07  E-value=5.9e-05  Score=46.87  Aligned_cols=93  Identities=14%  Similarity=0.070  Sum_probs=77.0

Q ss_pred             hhhcCCc------hHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhh
Q 031170            5 LSEMGKT------QDARNVFEEILAGNPLS--------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARD   70 (164)
Q Consensus         5 ~~~~~~~------~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   70 (164)
                      ....|+.      ++-+++|++++..-|-.        ...|...|.. ...++.+.|.+.|+.+++....      .+-
T Consensus        23 lE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk------FAK   95 (161)
T 4h7y_A           23 LEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK------FAF   95 (161)
T ss_dssp             HHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT------BHH
T ss_pred             HHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH------HHH
Confidence            3455888      88899999999987643        4456666644 6778999999999999998554      588


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      +|...|..-.++|+.++|.+.+.+++...|....
T Consensus        96 iwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           96 VHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            8999999999999999999999999999888665

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.95  E-value=0.00023  Score=43.23  Aligned_cols=75  Identities=12%  Similarity=-0.009  Sum_probs=62.9

Q ss_pred             hhhHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCC-CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170           68 ARDVRFIMAQIKFLQK---NVDEALKSYQELEIEDPN-DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      .....+.+|+++....   +..+++..++.+++.+|. ..+.++.+|..+.++|++++|..+...++...|.+.+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            4677788888887665   456899999999998884 46789999999999999999999999999999999554433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.94  E-value=0.0005  Score=42.33  Aligned_cols=75  Identities=12%  Similarity=-0.009  Sum_probs=63.6

Q ss_pred             hhhHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCC-CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170           68 ARDVRFIMAQIKFLQK---NVDEALKSYQELEIEDPN-DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      .....+.+|+++....   +..+++..++.++...|. ..+.++.+|..+.++|++++|.++.+..++..|.+.+....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            4778888888888766   456899999999998884 56778999999999999999999999999999999554433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.00023  Score=52.23  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=74.6

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPL---SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      +|..|...|++++|.+.|.++.....+   -.+.+.....+++..++|..+...+.++-......+............|.
T Consensus       137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl  216 (429)
T 4b4t_R          137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGI  216 (429)
T ss_dssp             HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence            467788899999999999988775432   35677788888889999999999999987765443322223345556788


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCC
Q 031170           78 IKFLQKNVDEALKSYQELEIEDP  100 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p  100 (164)
                      ++...++|.+|...|-.++....
T Consensus       217 ~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          217 HCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             GGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHhChHHHHHHHHHHHhccCC
Confidence            88888999999999888776643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.61  E-value=0.0027  Score=43.40  Aligned_cols=120  Identities=11%  Similarity=0.031  Sum_probs=85.5

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      .+...|+.++|+......++.+|.+......+..++.-.|+|+.|...++-+.+++|..      ......+-. .+   
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~------~~~a~~yr~-lI---   75 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY------LPGASQLRH-LV---   75 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG------HHHHHHHHH-HH---
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh------hHHHHHHHH-HH---
Confidence            46788999999999999999999999999999999999999999999999999999972      211111110 00   


Q ss_pred             CHHHHHHHHHHHHH-----hCCCCchhh---hhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           84 NVDEALKSYQELEI-----EDPNDFRPY---FCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        84 ~~~~A~~~~~~~~~-----~~p~~~~~~---~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                         .|...=.+++.     ..+..+..|   +..+......|+.++|.+.-.+++...|..
T Consensus        76 ---~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           76 ---KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             ---HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             ---HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence               01111112221     122333333   344556666899999999999999988765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.59  E-value=0.0048  Score=39.38  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hc--cccch--------hhhhhhH
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE--IA--EDGNK--------LKEARDV   71 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~--~~~~~--------~~~~~~~   71 (164)
                      ++.-+|+|..|+-++...     +.....+-.+.|+....+|..|+..+++.+.  .+  |+.+.        +....-.
T Consensus        42 ~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF  116 (242)
T 3kae_A           42 VLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF  116 (242)
T ss_dssp             HHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred             hhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence            455667777776665432     3445555566788888888888888888773  22  22111        0112334


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 031170           72 RFIMAQIKFLQKNVDEALKSYQELEIEDP  100 (164)
Q Consensus        72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p  100 (164)
                      ...+|.+.-..|+.++|+.++......+|
T Consensus       117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          117 ESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence            44678888888888888888877665544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.52  E-value=0.001  Score=48.14  Aligned_cols=100  Identities=10%  Similarity=-0.040  Sum_probs=74.9

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-chhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNP--LS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-NKLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~   73 (164)
                      +|..|+..|+|.+|.+.+.++.+.-.  ++    .+++.....+|...+++.++...+.++.+....- .++...+.+..
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~  184 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL  184 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence            46789999999999999998887422  22    3456667788999999999999999998764221 11222344555


Q ss_pred             HHHHHHH-HccCHHHHHHHHHHHHHhCC
Q 031170           74 IMAQIKF-LQKNVDEALKSYQELEIEDP  100 (164)
Q Consensus        74 ~la~~~~-~~~~~~~A~~~~~~~~~~~p  100 (164)
                      .-|.++. ..++|.+|..+|-+++....
T Consensus       185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          185 QSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            6788888 89999999999998876544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0026  Score=40.78  Aligned_cols=48  Identities=8%  Similarity=-0.115  Sum_probs=40.8

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      -.+.|+++.|.+..+.+     ++...|..+|......|+++-|..+|.++-.
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            46789999999988766     6788999999999999999999999888633

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.49  E-value=0.0065  Score=43.93  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=74.8

Q ss_pred             HHHHcCCcHHHHHHHHHHHhhccccchhhh----------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170           38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKE----------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      .....|+.+.|...+.+++.+.........                ...+...++..+...|++.+++..+..++..+|-
T Consensus       124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~  203 (388)
T 2ff4_A          124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY  203 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            334568889999999999998643211100                1223335677888999999999999999999999


Q ss_pred             CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170          102 DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                      +..++..+..++...|+..+|++.|.++...
T Consensus       204 ~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          204 REPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00059  Score=53.32  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL   95 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   95 (164)
                      .+..-+..+..+|+++-|+.+.++++...|.      ....|..|+.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs------eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALD------SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCch------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4555677888999999999999999999999      7899999999999999999999888775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.36  E-value=0.0047  Score=44.70  Aligned_cols=85  Identities=19%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             hcCCchHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch
Q 031170            7 EMGKTQDARNVFEEILAGNPLS----------------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK   64 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   64 (164)
                      ..|+.+.|...+.+++....+.                      ..+...++..+...|++++|+..+..++..+|-   
T Consensus       127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---  203 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY---  203 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---
T ss_pred             hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---
Confidence            3578889999999999985332                      112335667788999999999999999999998   


Q ss_pred             hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                         ...++..+..++...|+..+|+..|+++-.
T Consensus       204 ---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          204 ---REPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             ---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               677888999999999999999999988644

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.013  Score=43.27  Aligned_cols=98  Identities=13%  Similarity=0.137  Sum_probs=72.7

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-ccccchhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGN--PLS----FEALFENALLMDRCGEGEAVIKRLEEALEI-AEDGNKLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~   73 (164)
                      ||.++...|++.+|.+.+..+...-  ..+    .+.+.....++...+++..|...+.++... .+....+.-...+..
T Consensus       143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~  222 (445)
T 4b4t_P          143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN  222 (445)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence            4678899999999999999886532  111    456777888999999999999999987532 222111111345666


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ..|.++...++|.+|..+|..+...
T Consensus       223 ~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          223 LLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            8899999999999999999988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.20  E-value=0.0058  Score=47.73  Aligned_cols=109  Identities=11%  Similarity=-0.061  Sum_probs=64.4

Q ss_pred             hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc--hhhhhhhHHHHHHHHHHHcc
Q 031170            6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN--KLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~~   83 (164)
                      ...|++++|.+..     ...+++..|..+|..+.+.++++.|+.+|.++-....-..  ........+..++.+....|
T Consensus       663 l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          663 LKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            3455566665553     2346778889999999999999999988887532211000  00002333445666666777


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFA  127 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~  127 (164)
                      ++..|..+|.+.     .+++   ....+|...+++++|+..-+
T Consensus       738 ~~~~A~~~~~~~-----g~~~---~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          738 KFNLAFNAYWIA-----GDIQ---GAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             CHHHHHHHHHHH-----TCHH---HHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHc-----CCHH---HHHHHHHHcCChHHHHHHHH
Confidence            777776665442     1122   34455666777777777644

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.0027  Score=46.56  Aligned_cols=105  Identities=13%  Similarity=0.082  Sum_probs=80.7

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCch-
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP--NDFR-  104 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~-  104 (164)
                      -..++..+|..+...|++++|.+.|.++.......+.   ...+++....+++..+||..+..++.++.....  .++. 
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~  206 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER  206 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence            3457889999999999999999999999887655332   357778888899999999999999999865422  2222 


Q ss_pred             ---hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170          105 ---PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus       105 ---~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                         .....|.++...+++..|...|..++.....
T Consensus       207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence               2234566777799999999999888765433

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.16  E-value=0.019  Score=36.72  Aligned_cols=123  Identities=17%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      +-.+|+.++-.-.=+.   |..++....++.++.-.|+|..++-.+.+.   +        .....+..+.||....+|.
T Consensus        14 kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N--------T~Ts~YYk~LCy~klKdYk   79 (242)
T 3kae_A           14 RYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHKL---N--------TCTSKYYESLCYKKKKDYK   79 (242)
T ss_dssp             HTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHTC---C--------BHHHHHHHHHHHHHTTCHH
T ss_pred             hcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHhc---c--------hHHHHHHHHHHHHHHHHHH
Confidence            3456776654443333   444466677788888999999887665432   1        2345566788999999999


Q ss_pred             HHHHHHHHHHHh----CCC-------------Cchh-hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170           87 EALKSYQELEIE----DPN-------------DFRP-YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus        87 ~A~~~~~~~~~~----~p~-------------~~~~-~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      .|+.++++.+..    +|+             +.+- ...+|.++.+.|+.++|+.++.......|--..++..+
T Consensus        80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli  154 (242)
T 3kae_A           80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL  154 (242)
T ss_dssp             HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence            999999999943    222             2222 34678999999999999999999999998875444333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.023  Score=41.84  Aligned_cols=102  Identities=11%  Similarity=-0.014  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCch---
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI---EDPNDFR---  104 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~p~~~~---  104 (164)
                      ....++.++...|++.+|...+.....-............++.....++...+||.+|...+.++..   ..+..+.   
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~  218 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL  218 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence            4467899999999999999999887643222222222467788889999999999999999988743   2233332   


Q ss_pred             -hhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170          105 -PYFCKGMIYSLLDRNAEAKEEFAKYRQL  132 (164)
Q Consensus       105 -~~~~~~~~~~~~~~~~~A~~~l~~~~~~  132 (164)
                       .+...|.++...+++.+|-.+|..+...
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence             3456788888899999999998888754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.05  E-value=0.014  Score=42.38  Aligned_cols=100  Identities=8%  Similarity=-0.110  Sum_probs=75.9

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCc----hhh
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED---PNDF----RPY  106 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~----~~~  106 (164)
                      .+|.+|+..|+|.+|...+.+..+-....+...-..+++..-..+|...+++.++...+.++....   +.++    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            689999999999999999988888654422211235667777889999999999999998886542   1222    223


Q ss_pred             hhHHHHHH-hcCCHHHHHHHHHHHHhhC
Q 031170          107 FCKGMIYS-LLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus       107 ~~~~~~~~-~~~~~~~A~~~l~~~~~~~  133 (164)
                      ..-|.++. ..++|..|...|-.++...
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            56688888 8999999999999987543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.0032  Score=47.04  Aligned_cols=129  Identities=14%  Similarity=0.078  Sum_probs=61.4

Q ss_pred             hhcCCchHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCCcHHH----------HHHHHHHHhhccccch
Q 031170            6 SEMGKTQDARNVFEEILA-----------GNPLSFEALFENALLMDRCGEGEAV----------IKRLEEALEIAEDGNK   64 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~~~~~~A----------~~~~~~a~~~~~~~~~   64 (164)
                      +..+++++|.++-..++.           .++=...+|+-.+.++...|+....          ...+-.+++..--..+
T Consensus       147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D  226 (523)
T 4b4t_S          147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD  226 (523)
T ss_dssp             --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence            456788888887766551           1233455677777777777766543          2333444443322222


Q ss_pred             hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND-------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .......+..+-+.|...+.+++|..+..++.  .|..       ..-++..|.++...+++.+|.++|..+++..|.+
T Consensus       227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            22235666788999999999999999999874  4532       2235678999999999999999999999998876

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.62  E-value=0.011  Score=40.37  Aligned_cols=58  Identities=12%  Similarity=0.088  Sum_probs=34.7

Q ss_pred             HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170           39 MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND  102 (164)
Q Consensus        39 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  102 (164)
                      .++.|+.++|+..+...++..|.      +......+.+++.-.|+|++|.+-++.+.+.+|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~------da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            44555666666666666666665      45555555666666666666666666666665554

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.48  E-value=0.033  Score=41.66  Aligned_cols=59  Identities=5%  Similarity=-0.111  Sum_probs=32.6

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      .+|.+..-...++.|..+|.+|+.+.|+      ....+..+|.+....|+.-.|+-+|-+++..
T Consensus       157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~------~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          157 HLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHhCCC------CCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            4555555555555555555555555555      4455555555555555555555555555443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.43  E-value=0.014  Score=43.61  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=51.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      |.+......++.|..+|.+++...|++..++..+|.+....|+.-+|+-+|-+++-....
T Consensus       159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P  218 (497)
T 1ya0_A          159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence            344445567889999999999999999999999999999999999999999998876443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.30  E-value=0.052  Score=44.74  Aligned_cols=121  Identities=8%  Similarity=-0.049  Sum_probs=84.3

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-----------------hhh
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-----------------LKE   67 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~   67 (164)
                      +...+.++-|.+    .+...|.++...+.+|.+++..|++++|..+|+++..-......                 ...
T Consensus       822 l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~  897 (1139)
T 4fhn_B          822 LFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL  897 (1139)
T ss_dssp             HHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCS
T ss_pred             HHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccccc
Confidence            445566655543    34456778888899999999999999999999887432111000                 000


Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch-----hhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR-----PYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      ...++..+..++...+.++.++++.+.++...+.+..     .|..+=..+...|++++|...+...
T Consensus       898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            1345667788899999999999999999987654432     3444555667789999998877544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.20  E-value=0.11  Score=40.45  Aligned_cols=62  Identities=13%  Similarity=0.018  Sum_probs=41.9

Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCchhhhhH-------------HHHHHhcCCHHHHHHHH
Q 031170           68 ARDVRFIMAQIKFLQKNVDEALKSYQELEI--------EDPNDFRPYFCK-------------GMIYSLLDRNAEAKEEF  126 (164)
Q Consensus        68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~-------------~~~~~~~~~~~~A~~~l  126 (164)
                      ....|..+|..+...++++.|+.+|.++-.        ....+.+.+..+             ..++.+.|++++|++.|
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~  759 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLL  759 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHH
Confidence            367889999999999999999999998511        112222222222             23455578888888877


Q ss_pred             HHH
Q 031170          127 AKY  129 (164)
Q Consensus       127 ~~~  129 (164)
                      .+.
T Consensus       760 ~~~  762 (814)
T 3mkq_A          760 IKS  762 (814)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.17  E-value=0.11  Score=42.43  Aligned_cols=90  Identities=10%  Similarity=-0.082  Sum_probs=64.0

Q ss_pred             hhhhcCCchHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            4 LLSEMGKTQDARNVFEEILAG----NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      .|.+.|+.++|..+|.++...    ..-+...|..+...+.+.|+.++|..+|.+....+-..     +...+..+-.++
T Consensus       136 glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-----DvvTYntLI~gl  210 (1134)
T 3spa_A          136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-----DLLSYAAALQCM  210 (1134)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHH
Confidence            567788888888888765432    23356778888888888888889988888887754220     244455566677


Q ss_pred             HHccC-HHHHHHHHHHHHHh
Q 031170           80 FLQKN-VDEALKSYQELEIE   98 (164)
Q Consensus        80 ~~~~~-~~~A~~~~~~~~~~   98 (164)
                      .+.|+ .+.|.+++++....
T Consensus       211 cK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          211 GRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHTCCHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHc
Confidence            77776 46788888887765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.10  E-value=0.16  Score=41.38  Aligned_cols=96  Identities=9%  Similarity=-0.117  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhh-----ccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCc
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEI-----AEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED-PNDF  103 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~  103 (164)
                      ..+..+...+.+.|+.++|..+|....+.     .|+       ...+..+-..+.+.|++++|.+.|++..... .-+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv  200 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL  200 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence            35778889999999999999999775432     344       6677788889999999999999999987653 2244


Q ss_pred             hhhhhHHHHHHhcCCH-HHHHHHHHHHHhh
Q 031170          104 RPYFCKGMIYSLLDRN-AEAKEEFAKYRQL  132 (164)
Q Consensus       104 ~~~~~~~~~~~~~~~~-~~A~~~l~~~~~~  132 (164)
                      ..+..+...+.+.|+. ++|.+.|++....
T Consensus       201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          201 LSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            4556666677778874 7888999888765

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.77  E-value=0.12  Score=42.58  Aligned_cols=94  Identities=10%  Similarity=-0.117  Sum_probs=70.5

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGN-----------------------PLSFEALFENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~-----------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      +|+++...|++++|..+|+++-..-                       ..-+..|..+..++.+.+.++.++.....|++
T Consensus       848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~  927 (1139)
T 4fhn_B          848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA  927 (1139)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4789999999999999998873211                       11234566778899999999999999999999


Q ss_pred             hccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170           58 IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL   95 (164)
Q Consensus        58 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   95 (164)
                      ..+..... .....|..+-..+...|+|++|...+...
T Consensus       928 ~~~~~~~~-~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          928 SKETDDED-LSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HCCSCCHH-HHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             hccCCChh-hHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            76543221 12346677888899999999998877554

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.73  E-value=0.14  Score=39.35  Aligned_cols=116  Identities=13%  Similarity=0.035  Sum_probs=74.4

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            9 GKTQDARNVFEEILAGNPLSFEA----LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~----~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      ++.+.|...+.......+-+...    +..++.-....+...++...+.+......+       ....-.++...+..|+
T Consensus       228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~~~r~Alr~~d  300 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-------TSLIERRVRMALGTGD  300 (618)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-------HHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-------hHHHHHHHHHHHHCCC
Confidence            46677888887765433333222    222333333344356777777776544333       2223334445667899


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      ++.|..+|..+...........|.+|..+...|+.++|..+|.++..
T Consensus       301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            99999999776554334566788999999999999999999999875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.33  Score=31.08  Aligned_cols=89  Identities=16%  Similarity=-0.006  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 031170           27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE--------   98 (164)
Q Consensus        27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   98 (164)
                      .|++..+.++   ++.|+++.|.+..+..     +      ....|..+|......|+++-|..||+++-..        
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~   71 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----N------DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYL   71 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----C------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----C------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHH
Confidence            4566666554   6889999999887664     2      4678999999999999999999999884211        


Q ss_pred             CCCCchhh-------------hhHHHHHHhcCCHHHHHHHHHHH
Q 031170           99 DPNDFRPY-------------FCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        99 ~p~~~~~~-------------~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      .-.+.+-+             ...-.++...|+.++++..|.+.
T Consensus        72 ~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           72 VTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            01111111             11233455678888888887654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.20  E-value=0.13  Score=38.54  Aligned_cols=73  Identities=10%  Similarity=-0.040  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      ...+..+-..|+..+.|++|..+..++.  .|... .......+.+.+|.++..+++|.+|..++..++...|.+.
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            3456777889999999999999999884  44321 1111256677899999999999999999999999887654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.79  E-value=0.2  Score=30.84  Aligned_cols=54  Identities=13%  Similarity=0.000  Sum_probs=28.5

Q ss_pred             HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      ....+|+-++--+.+...+...+.      .++.++.+|..|-+.|+..+|-+.+.++-+
T Consensus       100 ~lv~~~KkDqLdki~~~~l~n~~~------~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILKNNEV------SASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccHhHHHHHHHHHhccCCC------ChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            445555555555555554333332      355666666666666666666666655544

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.05  E-value=0.87  Score=31.92  Aligned_cols=128  Identities=9%  Similarity=0.021  Sum_probs=70.0

Q ss_pred             hhhcCCchHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHHcCCc--HHHHHHHHHHHhhccccch------------
Q 031170            5 LSEMGKTQDARNVFEEILAG--NPLS----FEALFENALLMDRCGEG--EAVIKRLEEALEIAEDGNK------------   64 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~--~p~~----~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~------------   64 (164)
                      |...++|++|++++......  .-+.    .+....+..+|.+.+-.  ++.+.-+.+.++..|....            
T Consensus        43 y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~W  122 (312)
T 2wpv_A           43 YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNW  122 (312)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Confidence            45567777777776554332  1111    11222233444444322  3344444455554332221            


Q ss_pred             -------hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH----------------H---hCCCCchhhhhHHH-HHHhcC
Q 031170           65 -------LKEARDVRFIMAQIKFLQKNVDEALKSYQELE----------------I---EDPNDFRPYFCKGM-IYSLLD  117 (164)
Q Consensus        65 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----------------~---~~p~~~~~~~~~~~-~~~~~~  117 (164)
                             ..+++..+..+|..+...|++.+|..+|-..-                .   ..|...+.+..++. -|.-.|
T Consensus       123 S~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~  202 (312)
T 2wpv_A          123 SIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFIS  202 (312)
T ss_dssp             HHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhc
Confidence                   12256788899999999999999998774210                1   12223344444444 334488


Q ss_pred             CHHHHHHHHHHHHhh
Q 031170          118 RNAEAKEEFAKYRQL  132 (164)
Q Consensus       118 ~~~~A~~~l~~~~~~  132 (164)
                      +...|...+....+.
T Consensus       203 n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          203 NISFAHESKDIFLER  217 (312)
T ss_dssp             BHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            888888887766543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.67  E-value=0.42  Score=36.84  Aligned_cols=119  Identities=11%  Similarity=0.052  Sum_probs=79.7

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE   87 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   87 (164)
                      .+...++...+.+.....+++..... .+...+..|+++.|...|.++-.....      .....+.+|..+...|+.++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~r~Alr~~d~~~a~~~~~~l~~~~~~------~~r~~YW~~ra~~~~g~~~~  337 (618)
T 1qsa_A          265 NDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGTGDRRGLNTWLARLPMEAKE------KDEWRYWQADLLLERGREAE  337 (618)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHTCHHHHHHHHHHSCTTGGG------SHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCChHHHHHHHhccccCCChHHHHH-HHHHHHHCCCHHHHHHHHHHccccccc------cHhHHHHHHHHHHHcCCHHH
Confidence            34366777888877665544433333 333455779999999988775442222      46678899999999999999


Q ss_pred             HHHHHHHHHHhC-------------CC-----C-----c-----hhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           88 ALKSYQELEIED-------------PN-----D-----F-----RPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        88 A~~~~~~~~~~~-------------p~-----~-----~-----~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      |..+|+++....             |.     .     .     ...+..+..+...|....|...+.......
T Consensus       338 a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~  411 (618)
T 1qsa_A          338 AKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK  411 (618)
T ss_dssp             HHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC
Confidence            999998876421             00     0     0     112445667778899999988888776543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.65  E-value=2.2  Score=34.66  Aligned_cols=90  Identities=9%  Similarity=-0.062  Sum_probs=49.5

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED---------------   99 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------   99 (164)
                      +...+...|.++-|..    .+.-.|.      .+...+.+|.+++..|++++|..+|+++-..-               
T Consensus       816 l~~~L~~~~~~~~a~e----L~~~~~~------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~  885 (950)
T 4gq2_M          816 LVEKLFLFKQYNACMQ----LIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE  885 (950)
T ss_dssp             HHHHHHHTTCHHHHHH----HGGGCCS------SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHH
T ss_pred             HHHHHHHhcHHHHHHH----HHhhcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhh
Confidence            3344455555554432    3333444      23344666677777777777777666543210               


Q ss_pred             ------CCC--chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170          100 ------PND--FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus       100 ------p~~--~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p  134 (164)
                            ++.  ..-+...+.++...+-++-+++..+.|+....
T Consensus       886 ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~  928 (950)
T 4gq2_M          886 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE  928 (950)
T ss_dssp             HHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred             ccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence                  000  01234556666667888888888888886543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=90.49  E-value=1.9  Score=28.12  Aligned_cols=80  Identities=8%  Similarity=-0.130  Sum_probs=54.3

Q ss_pred             HHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170           16 NVFEEILAG---------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus        16 ~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      .++++++..         +|....+|...+..+ ..+...++...|..+....-...    .+..+...|..+...|++.
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~----~AlfYe~wA~~lE~~g~~~  132 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTK----LSLFYEEFSKLLENAQFFL  132 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTT----BHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHH----HHHHHHHHHHHHHHcCCHH
Confidence            456666553         233344566666554 23445688888888777654422    4666778899999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 031170           87 EALKSYQELEIEDP  100 (164)
Q Consensus        87 ~A~~~~~~~~~~~p  100 (164)
                      +|...|+..+....
T Consensus       133 ~A~~Vy~~GI~~~A  146 (202)
T 3esl_A          133 EAKVLLELGAENNC  146 (202)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999998644

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=89.92  E-value=1.3  Score=28.96  Aligned_cols=86  Identities=8%  Similarity=-0.077  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK  109 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  109 (164)
                      ...+-+|.+++..++|.+|...|..|++..|...... ...++..+--+-...|+... ...+++    .+.  ..+..+
T Consensus        15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~-k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L   86 (203)
T 3t5x_A           15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKN-KRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV   86 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHH-HHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence            3467899999999999999999999999988733221 12333344445566777653 333332    222  234444


Q ss_pred             HHHHHhcCCHHHHHH
Q 031170          110 GMIYSLLDRNAEAKE  124 (164)
Q Consensus       110 ~~~~~~~~~~~~A~~  124 (164)
                      .. ..+.|+...-..
T Consensus        87 ~~-Avr~Gdl~~f~~  100 (203)
T 3t5x_A           87 TR-AVSEGNLLLLHE  100 (203)
T ss_dssp             HH-HHHHTCHHHHHH
T ss_pred             HH-HHHhCCHHHHHH
Confidence            44 345676544333

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.60  E-value=4  Score=28.61  Aligned_cols=121  Identities=12%  Similarity=-0.027  Sum_probs=61.0

Q ss_pred             hhcCCchHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170            6 SEMGKTQDARNVFEEILAGN----P--LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus         6 ~~~~~~~~A~~~~~~~l~~~----p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      +..|+|=+|-+.|+.+..+.    .  .-.+.++.-+..+++.|++..|.++..-.++......... .....-.+..++
T Consensus        24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~-~~~~~~rl~~l~  102 (312)
T 2wpv_A           24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV-DDISVARLVRLI  102 (312)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-SHHHHHHHHHHH
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence            34455556655555444431    1  1123344555566666666666555444444322211110 122222344444


Q ss_pred             HHccCHH-HHHHHHHHHHHh-------CCCCchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170           80 FLQKNVD-EALKSYQELEIE-------DPNDFRPYFCKGMIYSLLDRNAEAKEEFA  127 (164)
Q Consensus        80 ~~~~~~~-~A~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~  127 (164)
                      .....-+ .=.++..++++-       .-.++..+..+|..+...|++.+|..+|-
T Consensus       103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            3322111 113333444432       12367788899999999999999998874

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=89.28  E-value=2.4  Score=26.63  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=10.9

Q ss_pred             hhhcCCchHHHHHHHHHHhcCC
Q 031170            5 LSEMGKTQDARNVFEEILAGNP   26 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p   26 (164)
                      ++..|+|-+|=++++.+....+
T Consensus        42 lFn~g~yfeaHEvLEe~W~~~~   63 (161)
T 2ijq_A           42 LYNSGEFHESHDCFEDEWYNYG   63 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHTTTTC
T ss_pred             HHhCCCchHHHHHHHHHHHhcC
Confidence            3444555555555555555443

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=89.28  E-value=1.3  Score=23.86  Aligned_cols=28  Identities=14%  Similarity=0.151  Sum_probs=17.6

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      .+|..+...|++++|..+|-+|+..+|.
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            3556666666666666666666666665

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=88.69  E-value=1.2  Score=23.91  Aligned_cols=32  Identities=3%  Similarity=-0.021  Sum_probs=23.2

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      ..+|..+...|++++|..+|-+|+...|.-..
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            35677777788888888877777777666444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.67  E-value=2.4  Score=26.21  Aligned_cols=129  Identities=10%  Similarity=-0.031  Sum_probs=74.8

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc---cccchhhh--------hhhH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA---EDGNKLKE--------ARDV   71 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~--------~~~~   71 (164)
                      .-+...|..++..+...+..+-.|....-|+- -++ ...-+-+--.+.++..=+.+   +=......        ...-
T Consensus        15 K~~ildG~v~qGveii~k~~~ssni~E~NW~I-CNi-iD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se   92 (172)
T 1wy6_A           15 KKFLLDGYIDEGVKIVLEITKSSTKSEYNWFI-CNL-LESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNE   92 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHH-HHH-HHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCH
T ss_pred             HHHHHhhhHHHHHHHHHHHcCCCCccccceee-eec-chhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHH
Confidence            34556788888888888888766654433331 111 11122222222222221111   10000000        0111


Q ss_pred             HHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           72 RFIM-AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        72 ~~~l-a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                      ++.+ -.....+|.-++--+.+...+...+-+++.++.+|.+|...|+..+|-+.+.+|-+.-
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            2222 3455677888888888877767777788999999999999999999999999987654

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=88.54  E-value=3.2  Score=26.07  Aligned_cols=66  Identities=12%  Similarity=-0.057  Sum_probs=48.6

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhhcccc--chhhhhhhHH-HHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           33 FENALLMDRCGEGEAVIKRLEEALEIAEDG--NKLKEARDVR-FIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        33 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      +..+..++..|+|-+|-+.++.+.+..+..  ....-..-++ +..|..+...|++..|...+.+++..
T Consensus        36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            455677888899999999999999987653  2111123334 44566778899999999999999774

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=88.21  E-value=5.3  Score=28.30  Aligned_cols=24  Identities=13%  Similarity=0.070  Sum_probs=11.9

Q ss_pred             chhhhhHHHHHHhcCCHHHHHHHH
Q 031170          103 FRPYFCKGMIYSLLDRNAEAKEEF  126 (164)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~A~~~l  126 (164)
                      +..+..+|..+...+++.+|..+|
T Consensus       136 p~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          136 PELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHH
Confidence            344444555555555555554444

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=86.96  E-value=3.4  Score=30.64  Aligned_cols=93  Identities=10%  Similarity=0.061  Sum_probs=62.1

Q ss_pred             CchHHHHHHHHHHhcCCCC------------HHH-H---HHHHHHHHHcCCcHHHHHHHHHHHhhcc--ccch--hhhhh
Q 031170           10 KTQDARNVFEEILAGNPLS------------FEA-L---FENALLMDRCGEGEAVIKRLEEALEIAE--DGNK--LKEAR   69 (164)
Q Consensus        10 ~~~~A~~~~~~~l~~~p~~------------~~~-~---~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~--~~~~~   69 (164)
                      ..++|...+.++....-++            -.+ +   ..+-.+|++.++...+...+...-...+  ....  .....
T Consensus       141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v  220 (455)
T 3t5v_B          141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI  220 (455)
T ss_dssp             HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence            3566777777776652211            111 1   2344689999999999888865433322  1110  11134


Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC
Q 031170           70 DVRFIMAQIKFLQKNVDEALKSYQELEIE-DPND  102 (164)
Q Consensus        70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~  102 (164)
                      .+.+.+|.++..+++|.+|.+++..|+.. .|..
T Consensus       221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            66778999999999999999999999998 7755

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=86.88  E-value=6.5  Score=27.86  Aligned_cols=127  Identities=11%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             hhhcCCchHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCC--cHHHHHHHHHHHhhccccc-------------
Q 031170            5 LSEMGKTQDARNVFEEILAGN--PLS----FEALFENALLMDRCGE--GEAVIKRLEEALEIAEDGN-------------   63 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~-------------   63 (164)
                      |...++|++|++++-.....-  -+.    .+....+..+|.+.+-  .++.+.-+-+.+...|...             
T Consensus        45 y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~W  124 (336)
T 3lpz_A           45 YSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDW  124 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence            556777788877655443320  111    1222233355555441  2334444455555444321             


Q ss_pred             ------hhhhhhhHHHHHHHHHHHccCHHHHHHHHHH-------HH---------HhCCCCchhhhhHHHH-HHhcCCHH
Q 031170           64 ------KLKEARDVRFIMAQIKFLQKNVDEALKSYQE-------LE---------IEDPNDFRPYFCKGMI-YSLLDRNA  120 (164)
Q Consensus        64 ------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------~~---------~~~p~~~~~~~~~~~~-~~~~~~~~  120 (164)
                            ....++..+..+|..+...+++.+|..+|--       .+         ...|...+.+..++.+ |...++..
T Consensus       125 S~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~  204 (336)
T 3lpz_A          125 SKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVR  204 (336)
T ss_dssp             HHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             HhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHH
Confidence                  1122567888999999999999999888721       00         0112233444555553 44489998


Q ss_pred             HHHHHHHHHHh
Q 031170          121 EAKEEFAKYRQ  131 (164)
Q Consensus       121 ~A~~~l~~~~~  131 (164)
                      .|...+...++
T Consensus       205 ~A~~~~~~f~~  215 (336)
T 3lpz_A          205 AANTAYRIFTS  215 (336)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88876655443

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=86.25  E-value=4.3  Score=30.10  Aligned_cols=60  Identities=12%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcC--------CCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-cccc
Q 031170            3 RLLSEMGKTQDARNVFEEILAGN--------PLS--FEALFENALLMDRCGEGEAVIKRLEEALEI-AEDG   62 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~   62 (164)
                      ++|++.++..-|..+++.+-...        |..  ....+-+|.++..+++|.+|...+..|++. .|..
T Consensus       184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            57899999999999997654432        222  334678999999999999999999999999 8753

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=85.85  E-value=0.41  Score=26.15  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=10.9

Q ss_pred             chhhhhcCCchHHHHHHHHHHh
Q 031170            2 ARLLSEMGKTQDARNVFEEILA   23 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~   23 (164)
                      |+-+...|+|+.|+.+|+.+++
T Consensus        19 ARe~Al~GnYdta~~yY~g~~~   40 (78)
T 2rpa_A           19 AREYALLGNYDSAMVYYQGVLD   40 (78)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcChHHHHHHHHHHHH
Confidence            3444445555555555554443

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=85.76  E-value=2.4  Score=26.74  Aligned_cols=31  Identities=16%  Similarity=-0.005  Sum_probs=18.5

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      +..+...|..+...|++.+|.+.|+..+...
T Consensus        96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~  126 (164)
T 2wvi_A           96 AQFYISWAEEYEARENFRKADAIFQEGIQQK  126 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4444555666666666666666666666543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.59  E-value=3.4  Score=33.62  Aligned_cols=20  Identities=15%  Similarity=0.145  Sum_probs=13.7

Q ss_pred             chhhhhcCCchHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEI   21 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~   21 (164)
                      |+++...|++++|..+|+++
T Consensus       847 gr~~L~~ge~~~A~~~F~kA  866 (950)
T 4gq2_M          847 ALIYLKSKEAVKAVRCFKTT  866 (950)
T ss_dssp             HHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            56667777777777777655

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=85.44  E-value=2.2  Score=24.21  Aligned_cols=28  Identities=14%  Similarity=0.151  Sum_probs=22.4

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      .+|..+...|+++.|+.+|-+|+..+|.
T Consensus        25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q   52 (95)
T 1om2_A           25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            5777778888888888888888888776

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=85.40  E-value=1  Score=24.52  Aligned_cols=27  Identities=26%  Similarity=0.187  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           72 RFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        72 ~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      ...+|+-+...|+|+.|+.+|+.++..
T Consensus        15 ~~k~ARe~Al~GnYdta~~yY~g~~~q   41 (78)
T 2rpa_A           15 NVKLAREYALLGNYDSAMVYYQGVLDQ   41 (78)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            456888899999999999999998875

>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A

Probab=85.37  E-value=3.5  Score=23.29  Aligned_cols=61  Identities=16%  Similarity=0.012  Sum_probs=36.1

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      .|..++..|+|-+|-+.++.+....|......-..-+....|..+...|+.  |...+.+++.
T Consensus         7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~   67 (94)
T 2cwy_A            7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA   67 (94)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence            456667778888888888888877654111111122333345555566666  7677766655

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=84.78  E-value=2.3  Score=23.93  Aligned_cols=27  Identities=19%  Similarity=0.016  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      .+...+..+...|+|++|+++.+++..
T Consensus        17 ~~~RrAe~ll~~gkydeAIech~kAa~   43 (97)
T 2crb_A           17 QQSRRADRLLAAGKYEEAISCHRKATT   43 (97)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            455678888899999999887777654

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.10  E-value=11  Score=27.22  Aligned_cols=93  Identities=8%  Similarity=-0.077  Sum_probs=63.2

Q ss_pred             hhhcCCchHHHHHHHHHHhcC-------C----------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc--hh
Q 031170            5 LSEMGKTQDARNVFEEILAGN-------P----------LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN--KL   65 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~-------p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~   65 (164)
                      .....+.++|.+.++++...-       +          ....+...++..++..|+.++|...++++-..-...+  .+
T Consensus        86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~  165 (393)
T 4b4t_O           86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPL  165 (393)
T ss_dssp             HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred             HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccH
Confidence            345678899999998774321       0          0133456788899999999999999988876432211  12


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      .....++...+..+...+++..+...+-..+.
T Consensus       166 ~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~  197 (393)
T 4b4t_O          166 RITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS  197 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            22345556678888888999888777666554

>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A

Probab=82.02  E-value=1.8  Score=28.63  Aligned_cols=64  Identities=13%  Similarity=0.064  Sum_probs=39.2

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCchh
Q 031170           36 ALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ---------KNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      ..++++.|.|++|...+++.+..++.      .......|..+-...         -.|+.-++...+-++..-+...+
T Consensus       121 V~VCiek~~f~kA~eiLkr~~~~~~s------~~kLr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki~~fve~~~~~a~~  193 (235)
T 3bu8_A          121 VIICIKNKEFEKASKILKKHMSKDPT------TQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLRFLESHLDDAEP  193 (235)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHSTTCGG------GHHHHHHHHHHHHHTCTTSHHHHTCCHHHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHhcchHHHHHHHHHHhcCCCC------chHHHHHHHHHHhccCcccHHHHhccHHHHHHHHHHHHHHHhcccch
Confidence            35778899999999999999888776      444555454444333         34555544444445443333333

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=81.63  E-value=3.4  Score=23.24  Aligned_cols=27  Identities=11%  Similarity=0.020  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      .+-..+..+...|.|++||++.+++..
T Consensus        17 ~~~RrAe~ll~~gkydeAIech~kAa~   43 (97)
T 2crb_A           17 QQSRRADRLLAAGKYEEAISCHRKATT   43 (97)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            344688999999999999999988764

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=81.56  E-value=6.6  Score=25.54  Aligned_cols=46  Identities=9%  Similarity=-0.187  Sum_probs=33.4

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHHcCCcH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALF-----ENALLMDRCGEGE   46 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-----~la~~~~~~~~~~   46 (164)
                      +|+++...++|.+|.+.+..++...|.......     .+.-+.+-.|+..
T Consensus        20 lGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP   70 (203)
T 3t5x_A           20 VGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP   70 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence            377888999999999999999999987765432     2223445667654

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=80.64  E-value=2.5  Score=23.94  Aligned_cols=32  Identities=3%  Similarity=-0.021  Sum_probs=26.3

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                      ..+|..+...|+++.|+.+|-+++...|.-..
T Consensus        24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~   55 (95)
T 1om2_A           24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   55 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            46899999999999999999898888776443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.004
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 6/151 (3%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +A +  E G    A + +   +   P   +A    A  +   G           AL +  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
                    D    +A IK  Q N++EA++ Y++     P     +     +     +  
Sbjct: 303 THA------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMK 151
           EA   + +  ++SP   +    +   L  M+
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 8/154 (5%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
           +  + +  G+   A + FE+ +  +P   +A      ++             + A+    
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-------IFDRAVAAYL 227

Query: 61  DGNKLKEAR-DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN 119
               L      V   +A + + Q  +D A+ +Y+      P+    Y             
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287

Query: 120 AEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLF 153
           AEA++ +    +L P   +    L          
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 8/65 (12%), Positives = 23/65 (35%)

Query: 75  MAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134
           +A  ++   + + A +   +L  ++P++         I+    R   +        + +P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 135 KKFEV 139
              E 
Sbjct: 65  LLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 8e-04
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 32  LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKS 91
             E A    + G+ EA  +   +      D         V  +++ I F  + +D +   
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHF 55

Query: 92  YQELEIEDPNDFRPYFCKGMIY 113
                 ++P     Y   G +Y
Sbjct: 56  STLAIKQNPLLAEAYSNLGNVY 77

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 11/131 (8%), Positives = 36/131 (27%), Gaps = 8/131 (6%)

Query: 4   LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN 63
           L +  G           +   +        +  ++ ++     A++K    +        
Sbjct: 95  LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---- 150

Query: 64  KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK 123
                +     +  I   +    +A   Y+      P++ +PY    ++ S    +    
Sbjct: 151 ----CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206

Query: 124 EEFAKYRQLSP 134
             + +   +  
Sbjct: 207 FYYCRSIAVKF 217

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 11/140 (7%), Positives = 36/140 (25%), Gaps = 16/140 (11%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
            A + +     QD    ++++L  +               +  E +      +  +   +
Sbjct: 26  PAEVWTSRQALQDL---YQKMLVTDLEYALD---------KKVEQDLWNHAFKNQITTLQ 73

Query: 61  DGNKLKEARDVRFIMAQIKFL----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL 116
              K +   +   + A +            + L+    +   D          G+I +  
Sbjct: 74  GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ 133

Query: 117 DRNAEAKEEFAKYRQLSPKK 136
              +   +  +       + 
Sbjct: 134 THTSAIVKPQSSSCSYICQH 153

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 82  QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEG 141
           +  + +AL+   E     P D         +  +      A E+  +  +L P+      
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 142 YLR 144
            LR
Sbjct: 69  QLR 71

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 51  RLEEALEIAEDGNKLK-EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK 109
           +L++ALE+  +  K   +   +R    ++  +  + + A +   +     P         
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 110 GMIYSLLDRNAEAKEEFAKYRQLSP 134
             +        +  +  A  + L  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGE 95

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 20/150 (13%), Positives = 38/150 (25%), Gaps = 4/150 (2%)

Query: 1   MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE 60
               L   G+ + A++        +P          L   +  E +      E   +  E
Sbjct: 111 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ----AKEVLKQHFE 166

Query: 61  DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
             +K +   ++          Q  ++       +      +     F  G  Y  L    
Sbjct: 167 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 226

Query: 121 EAKEEFAKYRQLSPKKFEVEGYLRTPLSRM 150
            A   F      +   F    Y    LS +
Sbjct: 227 SATALFKLAVANNVHNFVEHRYALLELSLL 256

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 2/108 (1%)

Query: 46  EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105
           E ++ R+E+ L      +   E   + +    +         A   + +     P+    
Sbjct: 16  EVILARMEQILASRALTDD--ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLF 153
           +   G+  +       A E F    +L P            L      
Sbjct: 74  FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.86
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.85
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.8
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.78
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.77
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.75
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.74
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.73
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.72
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.7
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.61
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.61
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.56
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.55
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.53
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.48
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.35
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.33
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.24
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.21
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.92
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.92
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.86
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.81
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.74
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.67
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.44
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.14
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.84
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.96
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.1
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	91.12
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	89.75
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.7
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	88.12
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.67
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	85.77
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	85.43
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	85.42
d1bpoa1	157	Clathrin heavy-chain linker domain {Rat (Rattus no	80.97

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=142.50  Aligned_cols=131  Identities=18%  Similarity=0.115  Sum_probs=120.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.      ....+..+|.++..
T Consensus       244 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhhhHHHHHHHH
Confidence            567888899999999999999999999999999999999999999999999999998887      67888899999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      .|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999843

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.1e-22  Score=134.70  Aligned_cols=133  Identities=20%  Similarity=0.157  Sum_probs=120.6

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|.+|...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+      ...++..+|.++.
T Consensus        43 ~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~  116 (259)
T d1xnfa_          43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh------hhhhHHHHHHHHH
Confidence            3778999999999999999999999999999999999999999999999999999999998      7889999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCch--------------------------------------------------------
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFR--------------------------------------------------------  104 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~--------------------------------------------------------  104 (164)
                      .+|++++|+..|+++++.+|++..                                                        
T Consensus       117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA  196 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998886322                                                        


Q ss_pred             --------------hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170          105 --------------PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV  139 (164)
Q Consensus       105 --------------~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~  139 (164)
                                    +++.+|.++...|++++|+..|++++..+|.++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         197 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence                          23335788888999999999999999999998543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-22  Score=139.25  Aligned_cols=131  Identities=6%  Similarity=0.062  Sum_probs=122.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGE-GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      |.++...+.+++|+..++++|.++|.+..+|..+|.++...|+ +++|+..++++++.+|+      +..++..+|.++.
T Consensus        50 ~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~------~~~a~~~~~~~~~  123 (315)
T d2h6fa1          50 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh------hhhHHHHHhHHHH
Confidence            4567788999999999999999999999999999999998875 89999999999999999      8899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      .+|++++|+.++.+++..+|++..+|..+|.++...|++++|+..+++++.++|.+..
T Consensus       124 ~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~  181 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS  181 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHH
Confidence            9999999999999999999999999999999999999999999999999999999843

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=117.75  Aligned_cols=105  Identities=12%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..|+|++|+..|.++++.+|+++.+|..+|.++..+|++++|+..+.++++++|+      .+.+++.+|.++..
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~   83 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc------hhhHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555555      45555555555555


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHH
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMI  112 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  112 (164)
                      +|++++|+.+|++++..+|+++.++..++.+
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5555555555555555555555555444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.9e-21  Score=132.74  Aligned_cols=137  Identities=18%  Similarity=0.178  Sum_probs=106.3

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE--------------   67 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------   67 (164)
                      |..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++++|.......              
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  105 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ  105 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            456677777777777777777777777777777777777777777777777777777665321100              


Q ss_pred             -----------------------------------------------------------------hhhHHHHHHHHHHHc
Q 031170           68 -----------------------------------------------------------------ARDVRFIMAQIKFLQ   82 (164)
Q Consensus        68 -----------------------------------------------------------------~~~~~~~la~~~~~~   82 (164)
                                                                                       .+.++..+|.++...
T Consensus       106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  185 (323)
T d1fcha_         106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS  185 (323)
T ss_dssp             HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence                                                                             123456778889999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      |++++|+.+|++++..+|++..+++.+|.++...|++++|+..++++++.+|++..
T Consensus       186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            99999999999999999999999999999999999999999999999999998843

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-20  Score=119.23  Aligned_cols=118  Identities=13%  Similarity=0.039  Sum_probs=101.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..|+|++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|.      ...++..+|.++..
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~------~~~a~~~~g~~~~~   90 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc------chHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999998      78889999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh--cCCHHHHHHH
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL--LDRNAEAKEE  125 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~A~~~  125 (164)
                      +|++++|+.++++++..+|++..++..++.+...  .+.+++|+..
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998887777665433  3445555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.4e-20  Score=120.18  Aligned_cols=126  Identities=12%  Similarity=0.130  Sum_probs=114.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..+...|+|++|++.|+++   .|.++.+|+.+|.++..+|++++|+..|+++++++|+      ...++..+|.++..
T Consensus        12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~------~~~a~~~~g~~~~~   82 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh------hhhhHHHHHHHHHh
Confidence            56788999999999999864   5667899999999999999999999999999999999      78999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCc----------------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           82 QKNVDEALKSYQELEIEDPNDF----------------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +|++++|+..|++++...+.+.                .+++.+|.++...|++++|++.+.+++.+.|..
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999999998765432                456789999999999999999999999999886

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2e-20  Score=126.34  Aligned_cols=131  Identities=20%  Similarity=0.191  Sum_probs=119.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNP----LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ   77 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~   77 (164)
                      |..+....+++.|+..+++++...+    ....+++.+|.+|...|++++|+..|+++++++|+      .+.++..+|.
T Consensus         6 ~~~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~------~~~a~~~lg~   79 (259)
T d1xnfa_           6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGI   79 (259)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHhhhch
Confidence            3445556778899999999998644    34568999999999999999999999999999999      7899999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ++..+|++++|+.+|++++..+|++..+++.+|.++..+|++++|+..++++++..|.+..
T Consensus        80 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  140 (259)
T d1xnfa_          80 YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF  140 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH
Confidence            9999999999999999999999999999999999999999999999999999999999843

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.6e-20  Score=129.88  Aligned_cols=131  Identities=12%  Similarity=0.092  Sum_probs=122.7

Q ss_pred             chhhhhcC-CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            2 ARLLSEMG-KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      |.++...| ++++|+..+++++..+|++..+|..+|.++..+|++++|+..+.++++++|.      +..+|..+|.++.
T Consensus        84 ~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~------n~~a~~~~~~~~~  157 (315)
T d2h6fa1          84 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc------chHHHHHHHHHHH
Confidence            55667766 5899999999999999999999999999999999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC------HHHHHHHHHHHHhhCCCcch
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR------NAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ..|++++|+.++++++..+|.+..+|..+|.++...+.      +++|+..+.+++...|.+..
T Consensus       158 ~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~  221 (315)
T d2h6fa1         158 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  221 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchH
Confidence            99999999999999999999999999999999888666      68999999999999999843

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.3e-20  Score=128.66  Aligned_cols=130  Identities=17%  Similarity=0.037  Sum_probs=112.0

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..+++++...|..+..+..+|.++...|++++|+..|+++++.+|+      ...++..+|.++..
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~  283 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKE  283 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence            566777888888888888888888888888888888888888888888888888888887      67788888888888


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      .|++++|+..++.++...|.+...+..++.++...|++++|+..+++++...|++.
T Consensus       284 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  339 (388)
T d1w3ba_         284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            88888888888888888888888888888888889999999999999999888873

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-19  Score=109.23  Aligned_cols=101  Identities=14%  Similarity=0.060  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM  111 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  111 (164)
                      +...|..++..|++++|+..|.++++.+|.      ...++..+|.++..+|++++|+..+.+++..+|+++.+++.+|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~   79 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   79 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHH
Confidence            556899999999999999999999999999      78999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170          112 IYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus       112 ~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      ++..+|++++|+..|++++...|++..
T Consensus        80 ~~~~~~~~~~A~~~~~~a~~~~p~~~~  106 (117)
T d1elwa_          80 ALEFLNRFEEAKRTYEEGLKHEANNPQ  106 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999943

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.2e-20  Score=123.06  Aligned_cols=108  Identities=17%  Similarity=0.095  Sum_probs=96.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..|+|++|+..|++++..+|+++.+|..+|.+|...|++++|+..|+++++++|+      ...++..+|.++..
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~------~~~a~~~lg~~~~~   84 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC------cHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999998      78899999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      +|++++|+.+|++++..+|.+...+...+..+..
T Consensus        85 l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~  118 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            9999999999999999888766655444444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.1e-20  Score=126.91  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=118.6

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLS--FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      +...+.+.+|+..|.+++..+|+.  +.++..+|.++...|++++|+..+++++...|+      ...++..+|.++...
T Consensus       146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~  219 (323)
T d1fcha_         146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANG  219 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc------cccchhhhhhccccc
Confidence            345567899999999999999874  677899999999999999999999999999998      788999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170           83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF  137 (164)
Q Consensus        83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~  137 (164)
                      |++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|.+++++.|++.
T Consensus       220 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         220 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             ccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence            9999999999999999999999999999999999999999999999999999873

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-18  Score=110.36  Aligned_cols=106  Identities=13%  Similarity=0.034  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG  110 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  110 (164)
                      .+...|..++..|+|++|+..|+++++++|+      +..++..+|.++...|++++|+.+|+++++.+|++..+++.+|
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g   85 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   85 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHH
Confidence            3567899999999999999999999999999      7999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170          111 MIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY  142 (164)
Q Consensus       111 ~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~  142 (164)
                      .++..+|++++|+..+++++.+.|.+......
T Consensus        86 ~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~  117 (159)
T d1a17a_          86 ASNMALGKFRAALRDYETVVKVKPHDKDAKMK  117 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999999999999999998444333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.2e-19  Score=116.95  Aligned_cols=103  Identities=13%  Similarity=-0.009  Sum_probs=98.2

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhh
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYF  107 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  107 (164)
                      +...+...|..++..|+|++|+..|++++.++|.      ++.++..+|.+|...|++++|+.+|++++..+|+++.+|+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~   76 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHH
Confidence            4566788999999999999999999999999999      7899999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|.++..+|++++|+..|++++.+.|.+
T Consensus        77 ~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          77 FLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999988865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.78  E-value=9.1e-19  Score=104.38  Aligned_cols=94  Identities=10%  Similarity=0.036  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170           31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG  110 (164)
Q Consensus        31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  110 (164)
                      .++.+|.++...|++++|+..|+++++.+|.      +..++..+|.++...|++++|+.+|++++..+|++..+++.+|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccc------cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH
Confidence            3577888899999999999999999999888      7888889999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 031170          111 MIYSLLDRNAEAKEEFAKYR  130 (164)
Q Consensus       111 ~~~~~~~~~~~A~~~l~~~~  130 (164)
                      .+|...|++++|++.+++++
T Consensus        92 ~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          92 VSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999988875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.9e-18  Score=107.10  Aligned_cols=114  Identities=13%  Similarity=0.084  Sum_probs=92.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK   66 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   66 (164)
                      |..++..|+|++|+..|++++...|..               ..++..+|.+|.++|++++|+..++++++++|.     
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-----   94 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-----   94 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-----
Confidence            567888999999999999999887754               234667888888888888888888888888887     


Q ss_pred             hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH
Q 031170           67 EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE  121 (164)
Q Consensus        67 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  121 (164)
                       +..+++.+|.+++.+|++++|+.+|++++..+|+++.+...++.+....++..+
T Consensus        95 -~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          95 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence             678888888888888888888888888888888888888777777666544443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.77  E-value=3.6e-18  Score=101.73  Aligned_cols=89  Identities=18%  Similarity=0.116  Sum_probs=86.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+      ...++..+|.+|..
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~la~~y~~   96 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc------cccchHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999      79999999999999


Q ss_pred             ccCHHHHHHHHHHHH
Q 031170           82 QKNVDEALKSYQELE   96 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~   96 (164)
                      +|++++|++++++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.2e-19  Score=106.21  Aligned_cols=110  Identities=22%  Similarity=0.178  Sum_probs=93.8

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI   78 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~   78 (164)
                      +..+...+++++|++.|++++..+|+++.+++.+|.++...+   ++++|+..|++++..+|...    ...+++.+|.+
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~----~~~~~~~Lg~~   81 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE----QRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH----HHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch----HHHHHHHHHHH
Confidence            455778889999999999999999999999999999998755   44579999999999887511    24578899999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      |...|++++|+.+|++++..+|++..+...++.+..+
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999988777766544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-17  Score=105.09  Aligned_cols=117  Identities=14%  Similarity=0.093  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh---------hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK---------EARDVRFIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      ...+...|..++..|+|++|+..|+++++..|......         ....++..+|.+|..+|++++|+.++++++..+
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            34566789999999999999999999999987643211         023455679999999999999999999999999


Q ss_pred             CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170          100 PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus       100 p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      |+++.+++.+|.++..+|++++|+..|++++.++|++......+..
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999998554444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.74  E-value=3.7e-18  Score=106.14  Aligned_cols=109  Identities=17%  Similarity=0.090  Sum_probs=92.5

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHhhccccchhhhhhhH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRC----------GEGEAVIKRLEEALEIAEDGNKLKEARDV   71 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   71 (164)
                      +..+.+.+.|++|+..|+++++.+|+++++++.+|.++...          +.+++|+..|+++++++|+      +..+
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~------~~~a   77 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEA   77 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch------hhHH
Confidence            45677889999999999999999999999999999998754          4557899999999999998      7888


Q ss_pred             HHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170           72 RFIMAQIKFLQKN-----------VDEALKSYQELEIEDPNDFRPYFCKGMIYSLL  116 (164)
Q Consensus        72 ~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  116 (164)
                      +..+|.+|..+|+           +++|+.+|++++..+|++...+..++.+....
T Consensus        78 ~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          78 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            9999999887653           68899999999999998887777777665333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-17  Score=100.89  Aligned_cols=100  Identities=11%  Similarity=0.103  Sum_probs=72.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh-hhhHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-ARDVRFIMAQIKF   80 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~   80 (164)
                      |..++..|+|++|+.+|++++..+|+++.++..+|.++..+|+|++|+..++++++++|....... ...++..+|.++.
T Consensus        11 G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~   90 (128)
T d1elra_          11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF   90 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence            566777788888888888888888888888888888888888888888888888887776432211 1345556777777


Q ss_pred             HccCHHHHHHHHHHHHHhCCC
Q 031170           81 LQKNVDEALKSYQELEIEDPN  101 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~  101 (164)
                      ..+++++|+.+|++++..+|.
T Consensus        91 ~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          91 KEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCC
T ss_pred             HhCCHHHHHHHHHHHHhcCCC
Confidence            777777777777777776543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.74  E-value=2e-17  Score=103.71  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170           70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEG  141 (164)
Q Consensus        70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~  141 (164)
                      .++..+|.+|..+|++++|+.++++++..+|.+..+++.+|.++..+|++++|+..|.+++.++|++.....
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~  139 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN  139 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            445567777777777777777777777777777777777777777777777777777777777777744333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=1.4e-17  Score=106.09  Aligned_cols=114  Identities=12%  Similarity=0.112  Sum_probs=71.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL   81 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~   81 (164)
                      |..++..|+|++|++.|++++...+..                  .+.....+.....|.      ...++..+|.++..
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~------~~~~~~nla~~~~~   89 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPV------ALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChh------hHHHHHHHHHHHHh
Confidence            456677788888888888777532110                  111111122233343      45556666777777


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170           82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV  139 (164)
Q Consensus        82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~  139 (164)
                      .|+|++|+..+.++++.+|+++.+++.+|.++..+|++++|+..|++++.++|++...
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~  147 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI  147 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            7777777777777777777777777777777777777777777777777777766433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.73  E-value=4.3e-17  Score=103.67  Aligned_cols=112  Identities=12%  Similarity=0.112  Sum_probs=82.4

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS---------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK   66 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   66 (164)
                      |..++..|+|++|+..|++++...|..               ..++.++|.|+..+|++++|+..++++++++|.     
T Consensus        22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-----   96 (168)
T d1kt1a1          22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-----   96 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-----
Confidence            566788888888888888888754432               233556777777888888888888888887777     


Q ss_pred             hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCH
Q 031170           67 EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN  119 (164)
Q Consensus        67 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  119 (164)
                       +..+++.+|.++..+|++++|+.+|++++..+|++..+...++.+....+..
T Consensus        97 -~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          97 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence             6777777788888888888888888888877777777777776666554443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=2.1e-16  Score=98.99  Aligned_cols=109  Identities=11%  Similarity=0.064  Sum_probs=98.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF----------------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL   65 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   65 (164)
                      |..++..|+|++|+..|++++...|...                .++.++|.++.++|++++|+..++++++++|.    
T Consensus        24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~----   99 (153)
T d2fbna1          24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN----   99 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch----
Confidence            5678899999999999999998776532                35678999999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170           66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL  116 (164)
Q Consensus        66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  116 (164)
                        +..+++.+|.++..+|++++|+.+|++++..+|++..+...++.+...+
T Consensus       100 --~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         100 --NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             --hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence              7899999999999999999999999999999999999888887776544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-16  Score=96.99  Aligned_cols=101  Identities=11%  Similarity=-0.018  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhh--
Q 031170           30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYF--  107 (164)
Q Consensus        30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--  107 (164)
                      ..+..+|..++..|+|++|+.+|+++++++|.      ...++..+|.+|..+|+|++|+..+++++..+|++...+.  
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~   78 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI   78 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence            45678999999999999999999999999998      7889999999999999999999999999999998876554  


Q ss_pred             -----hHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          108 -----CKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       108 -----~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                           .+|.++..++++++|+.++.+++...|..
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence                 45666677899999999999999988764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.70  E-value=3.7e-16  Score=99.27  Aligned_cols=115  Identities=12%  Similarity=0.081  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh---------hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK---------EARDVRFIMAQIKFLQKNVDEALKSYQELEIED   99 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   99 (164)
                      ...+...|..++..|+|.+|+..|.+++...+......         ....++..+|.||..+|++++|+.++++++..+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            45577899999999999999999999998765432210         023455679999999999999999999999999


Q ss_pred             CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170          100 PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL  143 (164)
Q Consensus       100 p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~  143 (164)
                      |++..+++.+|.++..+|++++|+..|.+++.++|++......+
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999995443333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=3.5e-16  Score=99.42  Aligned_cols=95  Identities=15%  Similarity=0.054  Sum_probs=85.2

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 031170           21 ILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP  100 (164)
Q Consensus        21 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  100 (164)
                      ....+|....++..+|.++.+.|+|++|+..++++++++|+      +..+++.+|.++..+|++++|+..|+++++.+|
T Consensus        69 ~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1          69 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh------hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            34566788889999999999999999999999999999998      789999999999999999999999999999999


Q ss_pred             CCchhhhhHHHHHHhcCCHHH
Q 031170          101 NDFRPYFCKGMIYSLLDRNAE  121 (164)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~  121 (164)
                      ++..+...++.+........+
T Consensus       143 ~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         143 EDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence            999988888888766554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.2e-17  Score=96.81  Aligned_cols=101  Identities=10%  Similarity=0.009  Sum_probs=90.4

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCC--chhhh
Q 031170           33 FENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL---QKNVDEALKSYQELEIEDPND--FRPYF  107 (164)
Q Consensus        33 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~--~~~~~  107 (164)
                      ..++..+...+++++|.+.|++++..+|.      +..+++.+|.++..   .+++++|+..|++++..+|++  ..+++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~   76 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF   76 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence            35677888999999999999999999999      78999999999986   556778999999999988765  45899


Q ss_pred             hHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170          108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV  139 (164)
Q Consensus       108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~  139 (164)
                      .+|.+|...|++++|+.+|++++.++|++...
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            99999999999999999999999999999443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.1e-16  Score=99.47  Aligned_cols=124  Identities=15%  Similarity=0.119  Sum_probs=102.6

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh----------hhhhh
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL----------KEARD   70 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------~~~~~   70 (164)
                      +|.++..+|++++|+..|+++++.+|+++.+|+.+|.++.++|++++|+..|++++...+.+...          .....
T Consensus        42 lG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e  121 (192)
T d1hh8a_          42 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE  121 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred             HHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHH
Confidence            47889999999999999999999999999999999999999999999999999999876543211          00246


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +++.+|.++...|++++|+..++.++...|....            +..+.|+..+.+.....|..
T Consensus       122 ~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~------------~~~~~Al~~~~~~~~~~~~~  175 (192)
T d1hh8a_         122 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH------------SKIDKAMECVWKQKLYEPVV  175 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG------------GHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch------------HHHHHHHHHHHhhhhCCccc
Confidence            7789999999999999999999999999887432            33456666666666666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=8.2e-16  Score=105.56  Aligned_cols=135  Identities=14%  Similarity=0.117  Sum_probs=114.6

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGN------PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      |.+|...|+|++|++.|.+++...      ++...++..+|.+|..+|++++|+..+++++++.+..+.......++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            567889999999999999999873      22345789999999999999999999999999988766554456777789


Q ss_pred             HHHHHH-ccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           76 AQIKFL-QKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        76 a~~~~~-~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      |.++.. .|++++|+.+|++++...+..      ..++..+|.++..+|++++|+..+++++...|..
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            998876 599999999999998764432      3447789999999999999999999999998876

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=5.5e-15  Score=101.39  Aligned_cols=136  Identities=15%  Similarity=0.084  Sum_probs=111.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDR-CGEGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      +|.+|...|++++|+..|++++...+..      ..++..+|.++.. .|++++|+..+++++++.+..+.......++.
T Consensus        83 ~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~  162 (290)
T d1qqea_          83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence            3678999999999999999999876554      5567788888865 69999999999999998776544433456778


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCch-------hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFR-------PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+|.++..+|+|++|+.+|++++...|....       .++..+.++...|++..|...+.+++..+|..
T Consensus       163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~  232 (290)
T d1qqea_         163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            8999999999999999999999999887653       24567888888999999999999999999875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.3e-14  Score=101.18  Aligned_cols=138  Identities=12%  Similarity=-0.011  Sum_probs=114.8

Q ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170           10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCG----------EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK   79 (164)
Q Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~   79 (164)
                      .+++|++++++++..+|++..+|..++.++...+          ++++|+.+++++++.+|+      +..++..+|.++
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk------~~~~~~~~~~~~  117 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLL  117 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC------cHHHHHHhhHHH
Confidence            3589999999999999999999987776655443          478999999999999999      788999999888


Q ss_pred             HHcc--CHHHHHHHHHHHHHhCCCCchhhh-hHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcc
Q 031170           80 FLQK--NVDEALKSYQELEIEDPNDFRPYF-CKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLF  153 (164)
Q Consensus        80 ~~~~--~~~~A~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~  153 (164)
                      ...+  ++++|+.++++++..+|+...++. ..|.++...+.+++|+..+++++.++|.+......+...+.....+
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence            7776  489999999999999999988864 6778888899999999999999999999955444444444444333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=2.6e-15  Score=93.06  Aligned_cols=102  Identities=17%  Similarity=0.135  Sum_probs=87.3

Q ss_pred             HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCchhhh
Q 031170           38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ----------KNVDEALKSYQELEIEDPNDFRPYF  107 (164)
Q Consensus        38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~  107 (164)
                      .+.+.+.|++|+..|+++++++|+      ++.++..+|.++...          +.+++|+..|+++++++|++..+++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~   79 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   79 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCc------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence            355677899999999999999999      889999999998854          5568999999999999999999999


Q ss_pred             hHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170          108 CKGMIYSLLDR-----------NAEAKEEFAKYRQLSPKKFEVEGYLRT  145 (164)
Q Consensus       108 ~~~~~~~~~~~-----------~~~A~~~l~~~~~~~p~~~~~~~~~~~  145 (164)
                      .+|.+|...|+           +++|+..|++++.++|++......+..
T Consensus        80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence            99999987653           689999999999999998443333333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=6.8e-16  Score=107.70  Aligned_cols=133  Identities=10%  Similarity=-0.024  Sum_probs=86.6

Q ss_pred             hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc--------------chhhh--
Q 031170            4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG--------------NKLKE--   67 (164)
Q Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~--   67 (164)
                      ++...+.+++|+..+++++..+|++..+|..+|.++...|++++|+..+.++++..|..              .....  
T Consensus       153 ~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~  232 (334)
T d1dcea1         153 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH  232 (334)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            34445555555555555555555555555555555555555444322222222222110              00000  


Q ss_pred             --------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           68 --------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        68 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                              ....+..+|.++...+++.+|+..+.+++..+|.+..+++.+|.++...|++++|+.++++++.++|.+
T Consensus       233 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         233 RWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             HHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence                    111222346677778899999999999999999999999999999999999999999999999999986

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.1e-15  Score=109.77  Aligned_cols=126  Identities=8%  Similarity=0.002  Sum_probs=85.4

Q ss_pred             hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170            5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN   84 (164)
Q Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~   84 (164)
                      ....+.|+.|+..+.+.+..+|.+..++..+|.++...|++++|+..+.+++..++        ..++..+|.++...|+
T Consensus        96 ~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~  167 (497)
T d1ya0a1          96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQ  167 (497)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHccc
Confidence            34456788888888888889999999999999999999999999999999998765        4678889999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE  138 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~  138 (164)
                      +++|+.+|++++..+|++..+++.+|.++...|+..+|+.+|.+++...|....
T Consensus       168 ~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~  221 (497)
T d1ya0a1         168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA  221 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Confidence            999999999999999999999999999999999999999999999999988733

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-14  Score=82.16  Aligned_cols=88  Identities=18%  Similarity=0.102  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh-hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhh
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK-EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYF  107 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  107 (164)
                      ++-++.+|.++.+.|+|++|+..|++++++.|...... ....++..+|.++...|++++|+.+|+++++.+|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            46688999999999999999999999999987643221 13567889999999999999999999999999999999998


Q ss_pred             hHHHHHHhc
Q 031170          108 CKGMIYSLL  116 (164)
Q Consensus       108 ~~~~~~~~~  116 (164)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887765543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.54  E-value=9.1e-15  Score=98.99  Aligned_cols=128  Identities=9%  Similarity=0.041  Sum_probs=109.5

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ   82 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~   82 (164)
                      +..+..|++++|+..|+++++.+|+++.++..++.++...|++++|+..|+++++++|+      ...++..++.++...
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------YLPGASQLRHLVKAA   77 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhc
Confidence            45678899999999999999999999999999999999999999999999999999998      778888888888887


Q ss_pred             cCHHHHHHHHHHHH-HhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           83 KNVDEALKSYQELE-IEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        83 ~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      +..+++...+.... ...|.....++..+.++...|+.++|++.+.++....|..
T Consensus        78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            77776655443322 2234445566778888999999999999999999999987

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.54  E-value=1.3e-14  Score=90.94  Aligned_cols=103  Identities=11%  Similarity=-0.079  Sum_probs=73.1

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh----
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF------------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL----   65 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----   65 (164)
                      |..++..|+|++|+..|++++.+.|+.+            .++.++|.++..+|++++|+..+++++++.|.....    
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            4556777888888888888888776542            457778888888888888888888888876542221    


Q ss_pred             -hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170           66 -KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR  104 (164)
Q Consensus        66 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  104 (164)
                       .....++..+|.+|..+|++++|+.+|++++.+.|....
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence             112335667788888888888888888888777655443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.6e-13  Score=94.69  Aligned_cols=135  Identities=13%  Similarity=0.000  Sum_probs=114.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA   76 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la   76 (164)
                      |.++...|++++|+..+++++...|++     ..++..+|.++..+|++++|+..++++++..+..+........+..++
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            677889999999999999999999986     347888999999999999999999999998876554444456777899


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCC--------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           77 QIKFLQKNVDEALKSYQELEIEDPND--------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .++...|++..|...+.+++...+..        ...+..+|.++...|+++.+...+.++....+..
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence            99999999999999999988753321        2345678899999999999999999999887765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.53  E-value=3.5e-14  Score=88.89  Aligned_cols=103  Identities=19%  Similarity=0.116  Sum_probs=86.0

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccccchhh------hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK------EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND-----  102 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----  102 (164)
                      ..|..++..|+|++|+..|++++++.|......      ....++..+|.+|..+|++++|+..+++++...|..     
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            447899999999999999999999988754321      124567789999999999999999999999875432     


Q ss_pred             ------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170          103 ------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       103 ------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                            ..+++.+|.++..+|++++|+..|++++.+.|..
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                  2357889999999999999999999999997655

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.1e-12  Score=90.38  Aligned_cols=129  Identities=12%  Similarity=0.033  Sum_probs=108.2

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH-
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLSF-EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK-   79 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-   79 (164)
                      +......|+++.|..+|++++...|.+. .+|...+.+....|.++.|...|+++++..|.      ....+...|... 
T Consensus       106 a~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~------~~~~~~~~a~~e~  179 (308)
T d2onda1         106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH
Confidence            3456677889999999999999888764 46888888888888999999999999988887      566777777664 


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170           80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      ...|+.+.|..+|++++..+|.++..|...+..+...|+.++|..+|++++...|.+
T Consensus       180 ~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            346889999999999999999999999999999999999999999999999987755

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6e-13  Score=76.33  Aligned_cols=74  Identities=8%  Similarity=0.043  Sum_probs=64.6

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLS-------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF   73 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   73 (164)
                      +|.++...|+|++|+.+|+++++..|.+       ..++..+|.++.+.|++++|+..++++++++|+      +..++.
T Consensus        11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~------~~~a~~   84 (95)
T d1tjca_          11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE------HQRANG   84 (95)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC------CHHHHH
Confidence            4788999999999999999999885543       678999999999999999999999999999999      677777


Q ss_pred             HHHHHHH
Q 031170           74 IMAQIKF   80 (164)
Q Consensus        74 ~la~~~~   80 (164)
                      .++.+..
T Consensus        85 Nl~~~~~   91 (95)
T d1tjca_          85 NLKYFEY   91 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.8e-11  Score=84.15  Aligned_cols=124  Identities=10%  Similarity=0.025  Sum_probs=110.4

Q ss_pred             cCCchHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170            8 MGKTQDARNVFEEILAG-NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD   86 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   86 (164)
                      .+..++|..+|++++.. .|.+...|...+.++..+|+++.|...|+++++..|..     ...++...+......|+++
T Consensus        77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-----~~~~w~~~~~~~~~~~~~~  151 (308)
T d2onda1          77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIK  151 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----THHHHHHHHHHHHHHHCHH
T ss_pred             ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHcCChH
Confidence            34568899999999975 78999999999999999999999999999999998862     2456788899999999999


Q ss_pred             HHHHHHHHHHHhCCCCchhhhhHHHHHHh-cCCHHHHHHHHHHHHhhCCCc
Q 031170           87 EALKSYQELEIEDPNDFRPYFCKGMIYSL-LDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus        87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .|..+|++++...|.+...+...+..... .|+.+.|..+|++++...|.+
T Consensus       152 ~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         152 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999998888876544 689999999999999999998

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=4.6e-11  Score=76.06  Aligned_cols=103  Identities=16%  Similarity=0.102  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh----------------hhhhHHHHHHHHHHHccCHHHHHHHH
Q 031170           29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK----------------EARDVRFIMAQIKFLQKNVDEALKSY   92 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------~~~~~~~~la~~~~~~~~~~~A~~~~   92 (164)
                      ...+...|......|++++|+..|.+++.+.++.....                ....++..++.++...|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            34556667777777777777777777777655432110                03456778999999999999999999


Q ss_pred             HHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           93 QELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        93 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      ++++..+|.+..+|..++.++...|++.+|++.|+++..
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999844

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.8e-12  Score=92.64  Aligned_cols=107  Identities=6%  Similarity=-0.169  Sum_probs=82.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF   80 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~   80 (164)
                      +|..+...|++++|+..+.+++..+|  ..++..+|.++...|++++|+.+|++|+++.|+      ...++..+|.++.
T Consensus       126 lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~------~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         126 LGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILAS  197 (497)
T ss_dssp             -----------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHH
T ss_pred             hHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------chHHHHHHHHHHH
Confidence            35667788999999999999988765  467889999999999999999999999999999      7899999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170           81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL  115 (164)
Q Consensus        81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  115 (164)
                      ..|++.+|+.+|.+++...|..+.++.+++.++..
T Consensus       198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998888877765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=7.5e-11  Score=75.07  Aligned_cols=90  Identities=18%  Similarity=0.142  Sum_probs=81.7

Q ss_pred             chhhhhcCCchHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170            2 ARLLSEMGKTQDARNVFEEILAGNPLS----------------------FEALFENALLMDRCGEGEAVIKRLEEALEIA   59 (164)
Q Consensus         2 a~~~~~~~~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   59 (164)
                      |......|++++|+..|.+++.+.++.                      ..++..++.++...|++++|+..+++++..+
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~   97 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH   97 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence            456788999999999999999998764                      2467889999999999999999999999999


Q ss_pred             cccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           60 EDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        60 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      |.      +..++..++.++...|++.+|+..|+++..
T Consensus        98 P~------~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          98 PY------REPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             TT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             Cc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99      789999999999999999999999999844

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=7.4e-11  Score=81.06  Aligned_cols=131  Identities=14%  Similarity=0.081  Sum_probs=103.4

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPL-------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM   75 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   75 (164)
                      ..+...+++.++...+.++....+.       ...++..++.++...|++++|...+++++...+.....  ....+..+
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~l  257 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF--LQGQWRNI  257 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG--GHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH--HHHHHHHH
Confidence            4455667777777777776664322       23456778899999999999999999999887764322  34556679


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHh------CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170           76 AQIKFLQKNVDEALKSYQELEIE------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK  135 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~  135 (164)
                      |.++...|++++|+.++++++..      .|....++..+|.++...|++++|+..+++++.+.+.
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999854      2445567889999999999999999999999988654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.92  E-value=2.6e-08  Score=66.39  Aligned_cols=57  Identities=11%  Similarity=0.026  Sum_probs=45.8

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhc
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIA   59 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~   59 (164)
                      ||..+...|++++|+++|+++.+.  ++..+++.+|.++..    ..++..|..+++.+.+..
T Consensus         8 lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           8 LGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence            366778899999999999999764  688999999999887    567777777777766543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.92  E-value=2.1e-08  Score=60.30  Aligned_cols=112  Identities=13%  Similarity=0.059  Sum_probs=93.0

Q ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH----ccC
Q 031170            9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL----QKN   84 (164)
Q Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~~~   84 (164)
                      .|+++|+.+|+++.+.  +++.+++.++.  ....++++|+.+++++.+.+        ++.+.+.+|.+|..    ..|
T Consensus         7 kd~~~A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--------~~~a~~~Lg~~y~~g~~~~~d   74 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACELN--------SGNGCRFLGDFYENGKYVKKD   74 (133)
T ss_dssp             HHHHHHHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSSSCCC
T ss_pred             cCHHHHHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhccc--------chhhhhhHHHhhhhccccchh
Confidence            4789999999999876  46677777764  34568899999999998864        36788899999986    568


Q ss_pred             HHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170           85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP  134 (164)
Q Consensus        85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p  134 (164)
                      +++|+.+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++...-.
T Consensus        75 ~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          75 LRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999999999875  678889999999887    5689999999999977653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=4.9e-08  Score=57.41  Aligned_cols=78  Identities=15%  Similarity=0.087  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcCCc---HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170           29 FEALFENALLMDRCGEG---EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP  105 (164)
Q Consensus        29 ~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  105 (164)
                      ++..+..|+++......   ++|+.+|+.+++.+|..     ....++.+|..|++.|+|++|..+++++++.+|++..+
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~-----~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            56677777777755433   46777777777766641     24567777777777777777777777777777777665


Q ss_pred             hhhHHH
Q 031170          106 YFCKGM  111 (164)
Q Consensus       106 ~~~~~~  111 (164)
                      ......
T Consensus       110 ~~L~~~  115 (124)
T d2pqrb1         110 GALKSM  115 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.81  E-value=6.4e-09  Score=69.88  Aligned_cols=85  Identities=9%  Similarity=-0.005  Sum_probs=73.9

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170           37 LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL  116 (164)
Q Consensus        37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  116 (164)
                      .-.+..|++++|+..++++++..|.      +..++..+|.++...|++++|+..++++++.+|++...+..++.++...
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            4456789999999999999999999      7899999999999999999999999999999999999988888887766


Q ss_pred             CCHHHHHHHHH
Q 031170          117 DRNAEAKEEFA  127 (164)
Q Consensus       117 ~~~~~A~~~l~  127 (164)
                      +..+++.....
T Consensus        78 ~~~~~a~~~~~   88 (264)
T d1zbpa1          78 QARKDFAQGAA   88 (264)
T ss_dssp             HHHHHHTTSCC
T ss_pred             cccHHHHHHhh
Confidence            66555544433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=4.2e-08  Score=57.69  Aligned_cols=71  Identities=13%  Similarity=-0.007  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCC-chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170           69 RDVRFIMAQIKFLQ---KNVDEALKSYQELEIEDPND-FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV  139 (164)
Q Consensus        69 ~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~  139 (164)
                      ....+..|.++...   ++.++|+..++.+++.+|.+ .+.++.+|..|..+|++++|..++++++.++|.+...
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            56777788887754   56789999999999998876 4789999999999999999999999999999999544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.67  E-value=5.5e-07  Score=59.78  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCc
Q 031170           28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL----QKNVDEALKSYQELEIEDPNDF  103 (164)
Q Consensus        28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~  103 (164)
                      ||.+++.+|..+...+++++|+++|+++.+.+        +..+++.+|.+|..    ..++..|..+++.+...  .++
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~   70 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYS   70 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--ccc
Confidence            57899999999999999999999999998764        36788899999997    77999999999998764  567


Q ss_pred             hhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCCCc
Q 031170          104 RPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSPKK  136 (164)
Q Consensus       104 ~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p~~  136 (164)
                      .+...+|.++..    .++.+.|...++.+....+..
T Consensus        71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             chhhccccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            777788877765    577889999999998776544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.44  E-value=3.8e-06  Score=50.09  Aligned_cols=82  Identities=11%  Similarity=0.006  Sum_probs=70.2

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH-
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-   81 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-   81 (164)
                      ...++++|+.+|+++.+.  +++.+.+.+|.+|..    ..++++|+.+|+++.+...        +.+.+.+|.+|.. 
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--------~~a~~~Lg~~y~~G  104 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND--------QDGCLILGYKQYAG  104 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHT
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc--------chHHHHHHHHHHcC
Confidence            346789999999999774  789999999999886    5578999999999998753        6778889999987 


Q ss_pred             ---ccCHHHHHHHHHHHHHh
Q 031170           82 ---QKNVDEALKSYQELEIE   98 (164)
Q Consensus        82 ---~~~~~~A~~~~~~~~~~   98 (164)
                         ..|..+|+.+|+++.+.
T Consensus       105 ~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         105 KGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CccCCCHHHHHHHHHHHHHC
Confidence               57999999999999876

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.1  Score=36.58  Aligned_cols=52  Identities=4%  Similarity=-0.250  Sum_probs=23.2

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170           76 AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY  129 (164)
Q Consensus        76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  129 (164)
                      +..++..|....|...+..++..  .+..-...++.+....|.++.||....++
T Consensus       388 a~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         388 VRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            34444455555555544444332  12333334444444455555555444433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.14  Score=35.78  Aligned_cols=117  Identities=13%  Similarity=0.056  Sum_probs=78.8

Q ss_pred             cCCchHHHHHHHHHHhcCCCCHHHHHHHH----HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170            8 MGKTQDARNVFEEILAGNPLSFEALFENA----LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK   83 (164)
Q Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la----~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~   83 (164)
                      ..+.+.|...+.......+.....+....    ......+..+.+...+........+       ......++...+..+
T Consensus       227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~w~~~~al~~~  299 (450)
T d1qsaa1         227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-------TSLIERRVRMALGTG  299 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-------HHHHHHHHHHHHHHT
T ss_pred             ccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc-------hHHHHHHHHHHHHcC
Confidence            45778888888887776665555443322    2233456677787777776655443       233333344566778


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170           84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ  131 (164)
Q Consensus        84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  131 (164)
                      ++..+..++..............|.+|..+...|+.++|...|..+-.
T Consensus       300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            999999888765433223455678999999999999999999999865

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.96  E-value=0.19  Score=29.00  Aligned_cols=56  Identities=13%  Similarity=-0.016  Sum_probs=31.3

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170           37 LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE   98 (164)
Q Consensus        37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   98 (164)
                      .+...+|+-++-.+.+...++....      +++.+..+|..|-+.|+..++-+.+.++-+.
T Consensus        94 d~lv~~~kkd~Ld~i~~~l~kn~~i------~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          94 DILVIQGKRDKLEEIGREILKNNEV------SASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC--CCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            3445555555555555555553333      4666666666666666666666666665543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.10  E-value=1.1  Score=30.13  Aligned_cols=54  Identities=7%  Similarity=0.044  Sum_probs=36.0

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170           74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAK  128 (164)
Q Consensus        74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~  128 (164)
                      .....|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-++.++.
T Consensus       104 ~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~  157 (336)
T d1b89a_         104 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL  157 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence            35566777888888888888887776666666666776665543 4444444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.12  E-value=1.4  Score=29.55  Aligned_cols=89  Identities=12%  Similarity=0.088  Sum_probs=60.4

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hccccc-hhhhhhhHHHHHHHHHH
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE-IAEDGN-KLKEARDVRFIMAQIKF   80 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~-~~~~~~~~~~~la~~~~   80 (164)
                      ..+...|.+++.+.+++.++...+.+...+..++.++.+.+ .++-.+.+...-. .++... ........|-.+..+|.
T Consensus       107 ~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~  185 (336)
T d1b89a_         107 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD  185 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHH
Confidence            45677899999999999999988889888889998887654 4555565544322 111100 01112334456778888


Q ss_pred             HccCHHHHHHHH
Q 031170           81 LQKNVDEALKSY   92 (164)
Q Consensus        81 ~~~~~~~A~~~~   92 (164)
                      +.|+++.|+...
T Consensus       186 ~~~~~~~A~~~~  197 (336)
T d1b89a_         186 KYEEYDNAIITM  197 (336)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             hcCCHHHHHHHH
Confidence            999999887765

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=89.75  E-value=1.5  Score=27.57  Aligned_cols=56  Identities=11%  Similarity=0.013  Sum_probs=37.1

Q ss_pred             HHHHHH-----HHccCHHHHHHHHHHHHHh--------CCCCchhhhhHHHHHHh-cCCHHHHHHHHHHH
Q 031170           74 IMAQIK-----FLQKNVDEALKSYQELEIE--------DPNDFRPYFCKGMIYSL-LDRNAEAKEEFAKY  129 (164)
Q Consensus        74 ~la~~~-----~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~~~~-~~~~~~A~~~l~~~  129 (164)
                      +.|+.|     +..|.-++|...|++|...        +|-.....++.+..++. +++.++|....+.+
T Consensus       123 mKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A  192 (220)
T d2o8pa1         123 VKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSL  192 (220)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            445554     3678888999999888763        22233344555555544 89999998877766

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.70  E-value=0.4  Score=24.98  Aligned_cols=26  Identities=19%  Similarity=0.019  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170           32 LFENALLMDRCGEGEAVIKRLEEALE   57 (164)
Q Consensus        32 ~~~la~~~~~~~~~~~A~~~~~~a~~   57 (164)
                      +...|.-+...|+|++|+++.+++..
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44566777788888888777766554

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.12  E-value=2  Score=27.09  Aligned_cols=27  Identities=11%  Similarity=0.168  Sum_probs=23.7

Q ss_pred             CchhhhhcCCchHHHHHHHHHHhcCCC
Q 031170            1 MARLLSEMGKTQDARNVFEEILAGNPL   27 (164)
Q Consensus         1 la~~~~~~~~~~~A~~~~~~~l~~~p~   27 (164)
                      +|++..+.++|++.+....+++..+|.
T Consensus         9 ~Aklaeq~eRy~dm~~~mk~~~~~~~e   35 (230)
T d2o02a1           9 KAKLAEQAERYDDMAACMKSVTEQGAE   35 (230)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHhcCCC
Confidence            367788899999999999999999875

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.67  E-value=0.62  Score=24.24  Aligned_cols=25  Identities=12%  Similarity=0.021  Sum_probs=21.3

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH
Q 031170           73 FIMAQIKFLQKNVDEALKSYQELEI   97 (164)
Q Consensus        73 ~~la~~~~~~~~~~~A~~~~~~~~~   97 (164)
                      -..|+-+...|.|++||+|.+++..
T Consensus        12 ~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1          12 SRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3678889999999999999988754

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=85.77  E-value=2  Score=24.68  Aligned_cols=121  Identities=11%  Similarity=0.010  Sum_probs=78.8

Q ss_pred             hhhhhcCCchHHHHHHHHHHhcCCCC--------------HHH----HHHHHHHH--HHcCCcHHHHHHHHHHHhhcccc
Q 031170            3 RLLSEMGKTQDARNVFEEILAGNPLS--------------FEA----LFENALLM--DRCGEGEAVIKRLEEALEIAEDG   62 (164)
Q Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~--------------~~~----~~~la~~~--~~~~~~~~A~~~~~~a~~~~~~~   62 (164)
                      .-+...|..++..+...+.++-.|..              .++    +-.+|.++  ...+.....+.++-.+   +.. 
T Consensus        10 Kk~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~---n~~-   85 (161)
T d1wy6a1          10 KKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NTL-   85 (161)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TCC-
T ss_pred             HHHHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHh---cch-
Confidence            34556788888888888887765532              122    22333222  2334444455544432   111 


Q ss_pred             chhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170           63 NKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS  133 (164)
Q Consensus        63 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  133 (164)
                            ....-.--++...+|.-++-.+.+...++...-.++.++.+|.+|...|...++-+.+.++-+.-
T Consensus        86 ------se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          86 ------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             ------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence                  22222233456678888888888889888999999999999999999999999999999987654

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.43  E-value=1  Score=24.18  Aligned_cols=28  Identities=14%  Similarity=0.151  Sum_probs=22.4

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170           34 ENALLMDRCGEGEAVIKRLEEALEIAED   61 (164)
Q Consensus        34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~   61 (164)
                      .+|..++..|+++++..+|-+|+..+|.
T Consensus        25 ~lGE~Ll~~G~~~~g~~h~~nAi~Vc~q   52 (95)
T d1om2a_          25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence            4677777888888888888888888776

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.42  E-value=1.8  Score=30.79  Aligned_cols=51  Identities=8%  Similarity=0.054  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCH
Q 031170           69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN  119 (164)
Q Consensus        69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  119 (164)
                      .......|.-.+..|+|.-|......++..+|++..+...++.++.++|.-
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~  480 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ  480 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            456667788888999999999999999999999999999999988886643

>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy-chain linker domain
domain: Clathrin heavy-chain linker domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.97  E-value=3.7  Score=24.12  Aligned_cols=45  Identities=9%  Similarity=-0.154  Sum_probs=29.3

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 031170            7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLE   53 (164)
Q Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~   53 (164)
                      ..++.+-|+.+-.+.  .-|+-.+.+...=+-++..|+|.+|..+.-
T Consensus        11 ~l~n~~la~~lA~r~--~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA   55 (157)
T d1bpoa1          11 VLQNPDLALRMAVRN--NLAGAEELFARKFNALFAQGNYSEAAKVAA   55 (157)
T ss_dssp             TTCCHHHHHHHHHHT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHhc--CCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345666665554443  446666666666677888888888866553