Citrus Sinensis ID: 031186

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLSL
Secondary Structure (PSIPRED)
ccccccccccccccEEEccEEEEEEEcccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccEEccccccccccHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHccccccccEccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
melalqslssasFSIITRDLKLRVctglhgkafssidiksqeqerklptvssalpeTAASVAIAATVVGAAATLLVRrtkgseeteiplktcedcggsgicpeckgegfvLKKLSEETAERARLTAKNMATRytaglpkkwsyctkcsssrscatcggrgklsl
Flexible Loop (DISEMBL)
MELALQSLSSASFSIITRDLKLRVCTGLHGKafssidiksqeqERKLPTVSSALPETAASVAIAATVVGAAATLLVrrtkgseeteiplktcedcggsgicpeCKGEGFVLKKLSEETAERARLTAKnmatrytaglpkkwsyctkcsssrscatcggrgklsl
Low Complexity Region (SEG)
MElalqslssasfsIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPEtaasvaiaatvvgaaatLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLSL
Disordered region (IsUnstruct)
***********SFSIITRDLKLRVCTGLHGKAFSSI*********************AASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLS*******RLTAKNMATRYTAGLPKKWSYCTKCS****************
Disordered Region (DISOPRED)
********SSASFSIITRDLKLRVCTGLHGKAFSS*****************ALPETAASVAIAATVVGAAATLL*******************CGGSGICPECKGEGFVLK*******************RYTAGLPKKWSYCTKCSSSRSCATCGGRGK***
Disordered Region (DISEMBL)
********SSASFSIITRDLKLRVCTGLHGKAFSSIDIK***********SSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCT*******************
Disordered Region (DISPRO)
**L**Q*LSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKG********KTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRG*L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
297734936	927	unnamed protein product [Vitis vinifera]	0.969	0.171	0.717	3e-50
359479447	176	PREDICTED: uncharacterized protein LOC10	0.969	0.903	0.717	1e-49
224106816	163	predicted protein [Populus trichocarpa]	0.993	1.0	0.731	9e-48
255565399	213	conserved hypothetical protein [Ricinus	0.798	0.615	0.778	2e-45
7671406	148	putative protein [Arabidopsis thaliana]	0.896	0.993	0.606	5e-45
30692502	158	uncharacterized protein [Arabidopsis tha	0.804	0.835	0.701	1e-44
297815652	163	hypothetical protein ARALYDRAFT_484900 [	0.987	0.993	0.612	1e-43
359806852	148	uncharacterized protein LOC100779715 [Gl	0.884	0.979	0.698	2e-42
356542656	148	PREDICTED: uncharacterized protein LOC10	0.890	0.986	0.680	6e-42
449459098	164	PREDICTED: uncharacterized protein LOC10	0.975	0.975	0.644	2e-40

>gi|297734936|emb|CBI17170.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 129/163 (79%), Gaps = 4/163 (2%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MELAL +L   +    +RD K  +         SS D+K Q Q RK+  VS ALPETAAS
Sbjct: 768 MELALHTLPLKT----SRDFKPHIHNAFDPDPISSTDVKLQAQRRKICRVSYALPETAAS 823

Query: 61  VAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAE 120
           VAIAATVVGAAATLLVRR++ SE TEIPLK CEDCGGSGIC EC GEGFVLKKLSE +AE
Sbjct: 824 VAIAATVVGAAATLLVRRSRPSEATEIPLKICEDCGGSGICSECNGEGFVLKKLSEASAE 883

Query: 121 RARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLS 163
           +ARLTAKNMATRYTAGLPKKWSYCTKCSS+RSC+TCGG GKLS
Sbjct: 884 KARLTAKNMATRYTAGLPKKWSYCTKCSSARSCSTCGGSGKLS 926

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479447|ref|XP_002273853.2| PREDICTED: uncharacterized protein LOC100258439 [Vitis vinifera]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 129/163 (79%), Gaps = 4/163 (2%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MELAL +L   +    +RD K  +         SS D+K Q Q RK+  VS ALPETAAS
Sbjct: 17  MELALHTLPLKT----SRDFKPHIHNAFDPDPISSTDVKLQAQRRKICRVSYALPETAAS 72

Query: 61  VAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAE 120
           VAIAATVVGAAATLLVRR++ SE TEIPLK CEDCGGSGIC EC GEGFVLKKLSE +AE
Sbjct: 73  VAIAATVVGAAATLLVRRSRPSEATEIPLKICEDCGGSGICSECNGEGFVLKKLSEASAE 132

Query: 121 RARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLS 163
           +ARLTAKNMATRYTAGLPKKWSYCTKCSS+RSC+TCGG GKLS
Sbjct: 133 KARLTAKNMATRYTAGLPKKWSYCTKCSSARSCSTCGGSGKLS 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106816|ref|XP_002314295.1| predicted protein [Populus trichocarpa] gi|222850703|gb|EEE88250.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 131/164 (79%), Gaps = 1/164 (0%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MELA+ +LS  SFS   R+ KL+  T       SSID+K QEQ RK  TV  +LPETAAS
Sbjct: 1   MELAVHALSFTSFSK-NRESKLQGRTIPDPATCSSIDVKLQEQGRKTSTVCYSLPETAAS 59

Query: 61  VAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAE 120
           VAIAAT VGAA TLLVRR K SE  EIPLKTCEDCGGSGIC EC GEGFVLKKLSEE+AE
Sbjct: 60  VAIAATAVGAAITLLVRRNKPSEADEIPLKTCEDCGGSGICSECSGEGFVLKKLSEESAE 119

Query: 121 RARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLSL 164
           RARL+AKNMATRYTAGLPKKWSYCTKCSS+RSC+ CGG GKL+ 
Sbjct: 120 RARLSAKNMATRYTAGLPKKWSYCTKCSSARSCSACGGSGKLNY 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565399|ref|XP_002523690.1| conserved hypothetical protein [Ricinus communis] gi|223536994|gb|EEF38630.1| conserved hypothetical protein [Ricinus communis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/131 (77%), Positives = 113/131 (86%)

Query: 33  FSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTC 92
           +SSI +K Q+ +R   T+SSALPET AS+AIAA VVG AAT+LVRRTK +E  EI LKTC
Sbjct: 82  WSSIGVKLQKHKRNASTISSALPETTASLAIAAAVVGTAATVLVRRTKATETNEIQLKTC 141

Query: 93  EDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRS 152
           EDC GSG+C ECKGEGFVLKKLSEE+AERARL AKNMATRYTA LPKKWSYCTKCSS+RS
Sbjct: 142 EDCEGSGLCSECKGEGFVLKKLSEESAERARLNAKNMATRYTAALPKKWSYCTKCSSARS 201

Query: 153 CATCGGRGKLS 163
           C TCGGRGKLS
Sbjct: 202 CLTCGGRGKLS 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7671406|emb|CAB89320.1| putative protein [Arabidopsis thaliana]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 113/165 (68%), Gaps = 18/165 (10%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MEL + SLSS     +  DLK                  S ++ ++  TV  AL ETA S
Sbjct: 1   MELRVNSLSSQDVRFLNLDLK-----------------SSHQRAKRSSTVVPALAETAVS 43

Query: 61  VAIAATVVGAAATLLVRR-TKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETA 119
           +AIAATVVG AAT+LVRR  K SEE E  +K CE C GSGICPECKGEGFVLKKLS+  A
Sbjct: 44  IAIAATVVGTAATILVRRNNKASEEAEASMKECEACLGSGICPECKGEGFVLKKLSDANA 103

Query: 120 ERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLSL 164
           E+ARL AKNMATRYTAGLPKKWSYCTKCSS+RSC  CGG GK S+
Sbjct: 104 EKARLAAKNMATRYTAGLPKKWSYCTKCSSTRSCMICGGSGKTSI 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692502|ref|NP_190091.2| uncharacterized protein [Arabidopsis thaliana] gi|30692507|ref|NP_850657.1| uncharacterized protein [Arabidopsis thaliana] gi|42572581|ref|NP_974386.1| uncharacterized protein [Arabidopsis thaliana] gi|222423502|dbj|BAH19721.1| AT3G45050 [Arabidopsis thaliana] gi|332644463|gb|AEE77984.1| uncharacterized protein [Arabidopsis thaliana] gi|332644464|gb|AEE77985.1| uncharacterized protein [Arabidopsis thaliana] gi|332644465|gb|AEE77986.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 106/134 (79%), Gaps = 2/134 (1%)

Query: 33  FSSIDIKSQEQE-RKLPTVSSALPETAASVAIAATVVGAAATLLVRRT-KGSEETEIPLK 90
           F ++D+KS  Q  ++  TV  AL ETA S+AIAATVVG AAT+LVRR  K SEE E  +K
Sbjct: 25  FLNLDLKSSHQRAKRSSTVVPALAETAVSIAIAATVVGTAATILVRRNNKASEEAEASMK 84

Query: 91  TCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS 150
            CE C GSGICPECKGEGFVLKKLS+  AE+ARL AKNMATRYTAGLPKKWSYCTKCSS+
Sbjct: 85  ECEACLGSGICPECKGEGFVLKKLSDANAEKARLAAKNMATRYTAGLPKKWSYCTKCSST 144

Query: 151 RSCATCGGRGKLSL 164
           RSC  CGG GK S+
Sbjct: 145 RSCMICGGSGKTSI 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815652|ref|XP_002875709.1| hypothetical protein ARALYDRAFT_484900 [Arabidopsis lyrata subsp. lyrata] gi|297321547|gb|EFH51968.1| hypothetical protein ARALYDRAFT_484900 [Arabidopsis lyrata subsp. lyrata]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/165 (61%), Positives = 118/165 (71%), Gaps = 3/165 (1%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MEL+L+ L S SF      L + +   +    F  ++     + R L TV+ AL ETA S
Sbjct: 1   MELSLK-LQSFSFPSSVSTLTISLTFEVLFFVFEGVNNARFLKTRSL-TVTPALAETAVS 58

Query: 61  VAIAATVVGAAATLLVRRT-KGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETA 119
           +AIAATVVG AAT+L RR+ K +EE E   K CE C GSGICPECKGEGFVLKKLS+  A
Sbjct: 59  IAIAATVVGTAATILARRSSKAAEEAEASTKECEACLGSGICPECKGEGFVLKKLSDANA 118

Query: 120 ERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLSL 164
           E+ARLTAKNMATRYTAGLPKKWSYCTKCSS+RSC TCGG GK S+
Sbjct: 119 EKARLTAKNMATRYTAGLPKKWSYCTKCSSTRSCITCGGSGKTSI 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806852|ref|NP_001241314.1| uncharacterized protein LOC100779715 [Glycine max] gi|255640844|gb|ACU20705.1| unknown [Glycine max]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 119/146 (81%), Gaps = 1/146 (0%)

Query: 19  DLKLRVCTGLHGKAFS-SIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVR 77
           DL L V   +    FS S ++K Q Q R+L TVSSAL ETAAS+A+A TVVGAAATLLV+
Sbjct: 2   DLHLSVRLPVSLPCFSHSQNVKLQLQRRRLSTVSSALAETAASMAVAVTVVGAAATLLVK 61

Query: 78  RTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGL 137
           R+K SE ++I  K CEDCGGSGIC ECKGEGFVL+K S+E+AE+AR+ AKNMATR+TAGL
Sbjct: 62  RSKTSESSQIQFKACEDCGGSGICSECKGEGFVLRKRSDESAEKARVQAKNMATRFTAGL 121

Query: 138 PKKWSYCTKCSSSRSCATCGGRGKLS 163
           PKKWSYCTKCSS RSC+TCGG GKLS
Sbjct: 122 PKKWSYCTKCSSGRSCSTCGGSGKLS 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542656|ref|XP_003539782.1| PREDICTED: uncharacterized protein LOC100778669 [Glycine max]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 119/147 (80%), Gaps = 1/147 (0%)

Query: 19  DLKLRVCTGLHGKAFS-SIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVR 77
           DL+++    +    FS S ++K Q Q R+L TVS AL ETAAS+A+A TVVGAAATLLV+
Sbjct: 2   DLRVQHPVDVSLPCFSHSQNVKLQLQRRRLSTVSFALAETAASMAVAVTVVGAAATLLVK 61

Query: 78  RTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGL 137
           R+K SE T+I  K CEDCGGSGIC ECKGEGFVL+K S+E+AE+AR+ AKNMATR+TAGL
Sbjct: 62  RSKTSESTQIQFKVCEDCGGSGICSECKGEGFVLRKRSDESAEKARVQAKNMATRFTAGL 121

Query: 138 PKKWSYCTKCSSSRSCATCGGRGKLSL 164
           PKKWSYCTKCSS RSC+TCGG GKLS 
Sbjct: 122 PKKWSYCTKCSSGRSCSTCGGSGKLSY 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459098|ref|XP_004147283.1| PREDICTED: uncharacterized protein LOC101218484 [Cucumis sativus] gi|449501230|ref|XP_004161313.1| PREDICTED: uncharacterized LOC101218484 [Cucumis sativus]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/166 (64%), Positives = 123/166 (74%), Gaps = 6/166 (3%)

Query: 1   MELALQSLSSASFSIITRDLKLR---VCTGLHGKAFSSIDIKSQEQERKLPTVSSALPET 57
           MEL L +    S   I R+ K     +C  L     S+ D+K Q   R L T++S+LPET
Sbjct: 1   MELTLPTPLFVSIPKIVRNSKPNNNGLCL-LDSNPLSA-DVKLQGGRRTL-TIASSLPET 57

Query: 58  AASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEE 117
           AASVAIAATVVGAAAT L RR K SE  E+PL TCEDCGGSG+C ECKGEGFVLKKLS+E
Sbjct: 58  AASVAIAATVVGAAATFLSRRNKNSEAVEVPLITCEDCGGSGLCSECKGEGFVLKKLSDE 117

Query: 118 TAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATCGGRGKLS 163
            AERARL AKNMATR+TA LPKKWSYC+KCSS+RSC+TCGG G L+
Sbjct: 118 NAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGSGTLN 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2075969	158	AT3G45050 "AT3G45050" [Arabido	0.804	0.835	0.604	7e-38

TAIR|locus:2075969 AT3G45050 "AT3G45050" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/134 (60%), Positives = 90/134 (67%)

Query:    33 FSSIDIKSQEQERKLP-TVSSALPEXXXXXXXXXXXXXXXXXLLVRRT-KGSEETEIPLK 90
             F ++D+KS  Q  K   TV  AL E                 +LVRR  K SEE E  +K
Sbjct:    25 FLNLDLKSSHQRAKRSSTVVPALAETAVSIAIAATVVGTAATILVRRNNKASEEAEASMK 84

Query:    91 TCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS 150
              CE C GSGICPECKGEGFVLKKLS+  AE+ARL AKNMATRYTAGLPKKWSYCTKCSS+
Sbjct:    85 ECEACLGSGICPECKGEGFVLKKLSDANAEKARLAAKNMATRYTAGLPKKWSYCTKCSST 144

Query:   151 RSCATCGGRGKLSL 164
             RSC  CGG GK S+
Sbjct:   145 RSCMICGGSGKTSI 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       135   0.00091  102 3  11 22  0.45    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.44u 0.07s 13.51t   Elapsed:  00:00:14
  Total cpu time:  13.44u 0.07s 13.51t   Elapsed:  00:00:18
  Start:  Fri May 10 15:01:36 2013   End:  Fri May 10 15:01:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022196001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (160 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	5e-05
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	3e-04
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	0.001
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	0.003

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 21/87 (24%)

Query: 88  PLKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKK 140
            +K C +CGG G        CP C G GF      +  A  +R T    A+     +P  
Sbjct: 1   MIKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASF---EIP-- 55

Query: 141 WSYCTKCSSS------RSCATCGGRGK 161
              C KC          +C  CGG GK
Sbjct: 56  ---CPKCRGKGTVTVYDTCPECGGTGK 79

Length = 715

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 37/89 (41%)

Query: 84  ETEIPL---KTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATR 132
           E EI +   ++CE C G+G         CP C G G V                      
Sbjct: 135 EKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQV-----------------RRQQG 177

Query: 133 YTAGLPKKWSYCTKCSSSRSCATCGGRGK 161
              G              ++C TCGG GK
Sbjct: 178 TPFG---------FFQQQQTCPTCGGEGK 197

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 31/94 (32%)

Query: 81  GSEETEIP-LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMAT 131
           G +E  IP L+TCE C GSG         C  C G G V +                 AT
Sbjct: 134 GEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRR-----------------AT 176

Query: 132 RYTAGLPKKWSYCTKCSSS-----RSCATCGGRG 160
           R   G   + S C  C+ +       C  CGG+G
Sbjct: 177 RTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQG 210

Length = 374

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 5/28 (17%)

Query: 91  TCEDCGGSG-----ICPECKGEGFVLKK 113
           TC  C G+G      C +CKG+G V KK
Sbjct: 185 TCPTCNGTGKIIKDPCGKCKGKGRVKKK 212

Length = 371

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.59
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.43
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.31
PRK14282	369	chaperone protein DnaJ; Provisional	98.24
PRK14298	377	chaperone protein DnaJ; Provisional	98.2
PRK14278	378	chaperone protein DnaJ; Provisional	98.17
PRK14280	376	chaperone protein DnaJ; Provisional	98.16
PRK14276	380	chaperone protein DnaJ; Provisional	98.14
PRK14289	386	chaperone protein DnaJ; Provisional	98.14
PRK14297	380	chaperone protein DnaJ; Provisional	98.1
PRK14287	371	chaperone protein DnaJ; Provisional	98.09
PRK10767	371	chaperone protein DnaJ; Provisional	98.07
PRK14293	374	chaperone protein DnaJ; Provisional	98.06
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.03
PRK14286	372	chaperone protein DnaJ; Provisional	98.0
PRK14296	372	chaperone protein DnaJ; Provisional	98.0
PRK14277	386	chaperone protein DnaJ; Provisional	98.0
PRK14281	397	chaperone protein DnaJ; Provisional	97.99
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.98
PRK14301	373	chaperone protein DnaJ; Provisional	97.98
PRK14300	372	chaperone protein DnaJ; Provisional	97.98
PRK14284	391	chaperone protein DnaJ; Provisional	97.97
PRK14288	369	chaperone protein DnaJ; Provisional	97.96
PRK14285	365	chaperone protein DnaJ; Provisional	97.94
PRK14279	392	chaperone protein DnaJ; Provisional	97.93
PRK14283	378	chaperone protein DnaJ; Provisional	97.93
PRK14294	366	chaperone protein DnaJ; Provisional	97.92
PRK14295	389	chaperone protein DnaJ; Provisional	97.87
PRK14291	382	chaperone protein DnaJ; Provisional	97.7
PRK14292	371	chaperone protein DnaJ; Provisional	97.63
PRK14290	365	chaperone protein DnaJ; Provisional	97.62
PTZ00037	421	DnaJ_C chaperone protein; Provisional	97.46
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	96.53
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.4
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.71
PRK14285	365	chaperone protein DnaJ; Provisional	95.53
PRK14300	372	chaperone protein DnaJ; Provisional	95.46
PRK14284	391	chaperone protein DnaJ; Provisional	95.17
PRK14282	369	chaperone protein DnaJ; Provisional	95.15
PRK10767	371	chaperone protein DnaJ; Provisional	95.12
PRK14293	374	chaperone protein DnaJ; Provisional	95.07
PRK14278	378	chaperone protein DnaJ; Provisional	95.04
PRK14288	369	chaperone protein DnaJ; Provisional	94.99
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	94.9
PTZ00037	421	DnaJ_C chaperone protein; Provisional	94.84
PRK14296	372	chaperone protein DnaJ; Provisional	94.8
PRK14290	365	chaperone protein DnaJ; Provisional	94.75
PRK14276	380	chaperone protein DnaJ; Provisional	94.74
PRK14281	397	chaperone protein DnaJ; Provisional	94.68
PRK14295	389	chaperone protein DnaJ; Provisional	94.64
PRK14301	373	chaperone protein DnaJ; Provisional	94.52
PRK14277	386	chaperone protein DnaJ; Provisional	94.52
PRK14286	372	chaperone protein DnaJ; Provisional	94.51
PRK14294	366	chaperone protein DnaJ; Provisional	94.5
PRK14279	392	chaperone protein DnaJ; Provisional	94.42
PRK14297	380	chaperone protein DnaJ; Provisional	93.43
PLN03165	111	chaperone protein dnaJ-related; Provisional	93.35
PRK14287	371	chaperone protein DnaJ; Provisional	93.2
PRK14283	378	chaperone protein DnaJ; Provisional	93.16
PRK14292	371	chaperone protein DnaJ; Provisional	93.12
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	93.01
KOG2813	406	consensus Predicted molecular chaperone, contains	92.27
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	91.78
PRK14298	377	chaperone protein DnaJ; Provisional	91.47
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	91.3
PRK14280	376	chaperone protein DnaJ; Provisional	90.96
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	90.53
PRK14289	386	chaperone protein DnaJ; Provisional	90.18
COG1656	165	Uncharacterized conserved protein [Function unknow	89.44
PRK14291	382	chaperone protein DnaJ; Provisional	89.2
PRK05580	679	primosome assembly protein PriA; Validated	86.53
KOG2813	406	consensus Predicted molecular chaperone, contains	84.5
PF14369	35	zf-RING_3: zinc-finger	82.73
PRK00635	1809	excinuclease ABC subunit A; Provisional	82.59
TIGR00595	505	priA primosomal protein N'. All proteins in this f	81.57
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	80.17

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.59  E-value=1.6e-08  Score=76.83  Aligned_cols=76  Identities=29%  Similarity=0.616  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhcCCCccccccccccccCCCCC--CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCcccccc
Q 031186           68 VGAAATLLVRRTKGSEETEIPLKTCEDCGGSG--ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCT  145 (164)
Q Consensus        68 VGaA~t~L~rr~k~~e~~e~~~~~Ce~C~GSG--iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~  145 (164)
                      ||--+++|+--+-.-++..+....|..|.|+|  .|+.|+|.|++...+                    .|..+-...|+
T Consensus        20 ~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--------------------~g~~q~~~~C~   79 (111)
T PLN03165         20 VGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL--------------------GGGEKEVSKCI   79 (111)
T ss_pred             hccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe--------------------CCcEEEEEECC
Confidence            34445555544433445677889999999999  799999999998742                    23345677899


Q ss_pred             CCCCC--ccccccCCccccc
Q 031186          146 KCSSS--RSCATCGGRGKLS  163 (164)
Q Consensus       146 kCS~~--r~C~~CgG~G~ls  163 (164)
                      .|.+.  ..|.+|.|+|...
T Consensus        80 ~C~G~Gk~~C~~C~G~G~~~   99 (111)
T PLN03165         80 NCDGAGSLTCTTCQGSGIQP   99 (111)
T ss_pred             CCCCcceeeCCCCCCCEEEe
Confidence            99887  4799999998753

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.43  E-value=1.7e-07  Score=63.33  Aligned_cols=52  Identities=37%  Similarity=0.992  Sum_probs=40.4

Q ss_pred             cccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC------ccccccC
Q 031186           92 CEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS------RSCATCG  157 (164)
Q Consensus        92 Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~------r~C~~Cg  157 (164)
                      |+.|.|+|.        ||.|+|.|+|+..                 +|-..|..+....|++|.+.      ..|.+|.
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~   63 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRR-----------------QQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCK   63 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEE-----------------EESSSTTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEE-----------------EeCCCeEEEEEEECCCCcceeeEECCCCCCCCC
Confidence            889999995        9999999999995                 45566777888899999876      5799999


Q ss_pred             Ccc
Q 031186          158 GRG  160 (164)
Q Consensus       158 G~G  160 (164)
                      |+|
T Consensus        64 G~g   66 (66)
T PF00684_consen   64 GSG   66 (66)
T ss_dssp             TSS
T ss_pred             CcC
Confidence            886

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.6e-07  Score=81.95  Aligned_cols=57  Identities=35%  Similarity=0.845  Sum_probs=49.6

Q ss_pred             cccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccc
Q 031186           88 PLKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCA  154 (164)
Q Consensus        88 ~~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~  154 (164)
                      ....|+.|.|||        .||.|+|.|.|...                  |.+ |.-.-+..|++|.|+     ..|.
T Consensus       141 ~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~------------------~~~-g~~~~~~~C~~C~G~G~~i~~pC~  201 (371)
T COG0484         141 RSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTV------------------QRT-GFFSFQQTCPTCNGTGKIIKDPCG  201 (371)
T ss_pred             eeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEE------------------Eee-eEEEEEEECCCCccceeECCCCCC
Confidence            347899999997        59999999999983                  334 999999999999998     5999


Q ss_pred             ccCCccccc
Q 031186          155 TCGGRGKLS  163 (164)
Q Consensus       155 ~CgG~G~ls  163 (164)
                      +|.|.|.+.
T Consensus       202 ~C~G~G~v~  210 (371)
T COG0484         202 KCKGKGRVK  210 (371)
T ss_pred             CCCCCCeEe
Confidence            999999863

>PRK14282 chaperone protein DnaJ; Provisional

Probab=98.24  E-value=7e-07  Score=76.31  Aligned_cols=57  Identities=35%  Similarity=0.942  Sum_probs=48.9

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|        .|+.|+|.|+|...                 +|.-.|+-+....|++|.|.     ..|.+
T Consensus       152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~  214 (369)
T PRK14282        152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREE-----------------RRSFFGVFVSERTCERCGGTGKIPGEYCHE  214 (369)
T ss_pred             cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEE-----------------EEccCcceEEEEECCCCCCcceeCCCCCCC
Confidence            35799999998        49999999999874                 56667888889999999997     47999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       215 C~G~g~v  221 (369)
T PRK14282        215 CGGSGRI  221 (369)
T ss_pred             CCCceeE
Confidence            9999965

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.20  E-value=8.4e-07  Score=76.48  Aligned_cols=57  Identities=32%  Similarity=0.809  Sum_probs=48.4

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|.        |+.|+|.|.|...                 +|.-.|.-+-+..|++|.|.     ..|..
T Consensus       141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~  203 (377)
T PRK14298        141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTT-----------------RSTPLGQFVTTTTCSTCHGRGQVIESPCPV  203 (377)
T ss_pred             eccCCCCCCCcccCCCCCCcCCCCCCccEEEEE-----------------EecCceeEEEEEeCCCCCCCCcccCCCCCC
Confidence            467999999984        9999999999985                 44455677889999999998     67999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       204 C~G~g~v  210 (377)
T PRK14298        204 CSGTGKV  210 (377)
T ss_pred             CCCccEE
Confidence            9999975

>PRK14278 chaperone protein DnaJ; Provisional

Probab=98.17  E-value=1.1e-06  Score=75.75  Aligned_cols=57  Identities=30%  Similarity=0.706  Sum_probs=48.5

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|        .|+.|+|.|.|...                 ++.-.|..+....|++|.|.     ..|..
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~  201 (378)
T PRK14278        139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTV-----------------QRSFLGQVMTSRPCPTCRGVGEVIPDPCHE  201 (378)
T ss_pred             eccCCCCcCccCCCCCCceecCCccCceEEEEE-----------------EeccceeEEEEEECCCCCccceeeCCCCCC
Confidence            36799999998        49999999999884                 44556777788899999998     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       202 C~G~g~v  208 (378)
T PRK14278        202 CAGDGRV  208 (378)
T ss_pred             CCCceeE
Confidence            9999975

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.16  E-value=1.2e-06  Score=75.13  Aligned_cols=57  Identities=35%  Similarity=0.826  Sum_probs=47.2

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|++|.|+|        .|+.|+|.|+|...                 ++--.|+-+....|++|.|.     ..|..
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~  205 (376)
T PRK14280        143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVE-----------------QNTPFGRVVNRQTCPHCNGTGQEIKEKCPT  205 (376)
T ss_pred             eccCCCCCCcccCCCCCCccCCCCCCEEEEEEE-----------------eecCCceEEEEEEcCCCCCCCceecCCCCC
Confidence            36799999998        49999999999874                 33345666678899999998     67999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       206 C~G~g~v  212 (376)
T PRK14280        206 CHGKGKV  212 (376)
T ss_pred             CCCceEE
Confidence            9999975

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.14  E-value=1.3e-06  Score=75.00  Aligned_cols=57  Identities=33%  Similarity=0.827  Sum_probs=48.2

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|        .|+.|+|.|.|...                 +|.-.|.-+....|++|.|.     ..|..
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~  208 (380)
T PRK14276        146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVD-----------------TQTPLGMMRRQVTCDVCHGTGKEIKEPCQT  208 (380)
T ss_pred             cccCCCCcCcccCCCCCCccCCCCCCeeEEEEE-----------------EecCCceEEEEEECCCCCCCCccccCCCCC
Confidence            46799999998        49999999999874                 45556777778999999997     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       209 C~G~g~~  215 (380)
T PRK14276        209 CHGTGHE  215 (380)
T ss_pred             CCCceEE
Confidence            9999975

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.14  E-value=1.5e-06  Score=74.55  Aligned_cols=57  Identities=35%  Similarity=0.881  Sum_probs=48.4

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|.        |+.|+|.|+++..                 +|.-.|+-+....|++|.|.     ..|..
T Consensus       154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~  216 (386)
T PRK14289        154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRV-----------------QNTILGTMQTQSTCPTCNGEGKIIKKKCKK  216 (386)
T ss_pred             ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEE-----------------EecccceEEEEEecCCCCccccccCcCCCC
Confidence            478999999994        9999999999884                 44445777789999999988     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |+|+|.+
T Consensus       217 C~G~g~v  223 (386)
T PRK14289        217 CGGEGIV  223 (386)
T ss_pred             CCCCcEE
Confidence            9999975

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.10  E-value=2e-06  Score=73.77  Aligned_cols=57  Identities=33%  Similarity=0.802  Sum_probs=47.9

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|.        |+.|+|.|+|+..                 ++-..|+-+....|++|.|.     ..|.+
T Consensus       148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~  210 (380)
T PRK14297        148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQ-----------------RNTPLGSFVSTTTCDKCGGSGKVIEDPCNK  210 (380)
T ss_pred             eccCCCcccccccCCCcCccCCCccCeEEEEEE-----------------EEcCCceeEEEEeCCCCCCCceEcCCCCCC
Confidence            357999999984        9999999999874                 44456777888999999998     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       211 C~G~g~v  217 (380)
T PRK14297        211 CHGKGKV  217 (380)
T ss_pred             CCCCeEE
Confidence            9999954

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.09  E-value=1.8e-06  Score=74.16  Aligned_cols=57  Identities=37%  Similarity=0.852  Sum_probs=47.3

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|++|.|+|        .|+.|+|.|+|...                 +|.-.|.-+....|++|.+.     ..|..
T Consensus       138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~  200 (371)
T PRK14287        138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVE-----------------QNTPFGRVVNRRVCHHCEGTGKIIKQKCAT  200 (371)
T ss_pred             eccCCCCCCcccCCCCCCcccCCCCCEEEEEEE-----------------EecCCceEEEEEeCCCCCCCCccccccCCC
Confidence            35799999998        49999999999874                 45555776678899999988     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |+|.|.+
T Consensus       201 C~G~g~v  207 (371)
T PRK14287        201 CGGKGKV  207 (371)
T ss_pred             CCCeeEE
Confidence            9999865

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.07  E-value=2.7e-06  Score=72.52  Aligned_cols=53  Identities=38%  Similarity=0.949  Sum_probs=44.5

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|        .|+.|+|.|.|+..                  +   |.-+-...|++|.|.     ..|..
T Consensus       142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~------------------~---g~~~~~~~C~~C~G~G~~~~~~C~~  200 (371)
T PRK10767        142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQ------------------Q---GFFTVQQTCPTCHGRGKIIKDPCKK  200 (371)
T ss_pred             cccCCCCCCcccCCCCCCccCCCCCCeeEEEEe------------------e---ceEEEEEeCCCCCCceeECCCCCCC
Confidence            46799999998        59999999998863                  1   555667899999998     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       201 C~G~g~v  207 (371)
T PRK10767        201 CHGQGRV  207 (371)
T ss_pred             CCCCceE
Confidence            9999975

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.06  E-value=2.8e-06  Score=72.80  Aligned_cols=57  Identities=42%  Similarity=0.897  Sum_probs=48.6

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|.        |+.|+|.|.|++.                 +|.-.|+-+.+..|.+|.|.     ..|..
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~  205 (374)
T PRK14293        143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRA-----------------TRTPFGSFTQVSECPTCNGTGQVIEDPCDA  205 (374)
T ss_pred             cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEE-----------------EecCcceEEEEeeCCCCCcceeEeccCCCC
Confidence            468999999884        9999999999874                 56666777778999999988     58999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       206 C~G~g~v  212 (374)
T PRK14293        206 CGGQGVK  212 (374)
T ss_pred             CCCCccc
Confidence            9999975

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.03  E-value=4.1e-06  Score=70.66  Aligned_cols=57  Identities=33%  Similarity=0.902  Sum_probs=48.7

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|        .|+.|+|.|+|+..                 ++...|+-+....|.+|.|.     ..|..
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~  205 (354)
T TIGR02349       143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ-----------------QGTPFGFFQQQQTCPTCGGEGKIIKEPCST  205 (354)
T ss_pred             CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEE-----------------EeccCCceEEEEecCCCCCcceecCCCCCC
Confidence            46799999998        49999999999984                 45567777788999999998     46999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       206 C~G~g~v  212 (354)
T TIGR02349       206 CKGKGRV  212 (354)
T ss_pred             CCCCcEe
Confidence            9999975

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.00  E-value=3.5e-06  Score=72.43  Aligned_cols=53  Identities=40%  Similarity=0.999  Sum_probs=45.2

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|++|.|+|        .|+.|+|.|.|+...                     |+-+-+..|++|.|.     ..|..
T Consensus       150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------------------G~~~~~~~C~~C~G~G~~~~~~C~~  208 (372)
T PRK14286        150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ---------------------GFFSVATTCPTCRGKGTVISNPCKT  208 (372)
T ss_pred             cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe---------------------ceEEEEEeCCCCCceeeEecccCCC
Confidence            36799999998        499999999998741                     555678899999998     68999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       209 C~G~g~~  215 (372)
T PRK14286        209 CGGQGLQ  215 (372)
T ss_pred             CCCCcEE
Confidence            9999975

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.00  E-value=3.6e-06  Score=72.53  Aligned_cols=57  Identities=33%  Similarity=0.750  Sum_probs=45.2

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|.        |+.|+|.|.|+..                 ++.-.+.-+-...|++|.|.     ..|..
T Consensus       149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~  211 (372)
T PRK14296        149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQ-----------------KNMGFFQFQQSAKCNVCNGAGKIIKNKCKN  211 (372)
T ss_pred             eeccCCCCCCccCCCCCCccCCCCCCCceEEEE-----------------EeccceEEEEEecCCCcCCcceeecccccC
Confidence            367999999994        9999999999884                 22222333667899999988     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       212 C~G~g~v  218 (372)
T PRK14296        212 CKGKGKY  218 (372)
T ss_pred             CCCceEE
Confidence            9999965

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.00  E-value=4e-06  Score=72.28  Aligned_cols=57  Identities=33%  Similarity=0.881  Sum_probs=47.6

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|.        |+.|+|.|.|...                 ++--.|+-+....|++|.|.     ..|..
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~  217 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTR-----------------QNTPFGRIVNIRTCDRCHGEGKIITDPCNK  217 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEE-----------------EeccCceEEEEEECCCCCcceeeccCCCCC
Confidence            367999999884        9999999999874                 44445777777899999998     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       218 C~G~g~v  224 (386)
T PRK14277        218 CGGTGRI  224 (386)
T ss_pred             CCCCcEE
Confidence            9999976

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.99  E-value=4.3e-06  Score=72.48  Aligned_cols=57  Identities=30%  Similarity=0.761  Sum_probs=47.9

Q ss_pred             ccccccCCCCCC-------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccccc
Q 031186           89 LKTCEDCGGSGI-------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCATC  156 (164)
Q Consensus        89 ~~~Ce~C~GSGi-------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~C  156 (164)
                      ...|..|.|+|.       |+.|+|.|+|...                 +|--.|.-+....|++|.|.     ..|..|
T Consensus       163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  225 (397)
T PRK14281        163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQA-----------------SKTMFGQFVNITACPTCGGEGRVVKDRCPAC  225 (397)
T ss_pred             eecCCCCCCcccCCCCCccCCCCCCCcEEEEE-----------------EecccceEEEEEecCCCcceeeeeCCCCCCC
Confidence            357999999984       9999999999773                 45556777778899999998     579999


Q ss_pred             CCcccc
Q 031186          157 GGRGKL  162 (164)
Q Consensus       157 gG~G~l  162 (164)
                      .|.|.+
T Consensus       226 ~G~g~v  231 (397)
T PRK14281        226 YGEGIK  231 (397)
T ss_pred             CCCccE
Confidence            999976

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.98  E-value=4.5e-06  Score=79.37  Aligned_cols=65  Identities=38%  Similarity=0.877  Sum_probs=47.3

Q ss_pred             ccccccCCCCC-------CCCCccCcceeeeccCHHH-HHHHHHHhhhhhhhhhcCCCCc-cccccCCCCC------ccc
Q 031186           89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSEET-AERARLTAKNMATRYTAGLPKK-WSYCTKCSSS------RSC  153 (164)
Q Consensus        89 ~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~-A~kAr~~AKnmAtRytaGlpkk-wsyC~kCS~~------r~C  153 (164)
                      .+.|.+|+|.|       .||-|.|.||+ +++++.- +.-+|         -+.-+--+ --.|++|-+.      ..|
T Consensus         2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~-~~~d~k~~~~~~~---------~~~D~~~~~~~pc~~c~gkG~V~v~~~c   71 (715)
T COG1107           2 IKKCPECGGKGKIVVGEEECPVCHGTGFS-DDFDPKGVANLSR---------ETVDLFASFEIPCPKCRGKGTVTVYDTC   71 (715)
T ss_pred             CccccccCCCceEeeeeeecccccccccc-cccChhhhhhhhh---------ccccccccCCCCCCeeccceeEEEEeec
Confidence            57899999999       49999999999 8887711 21122         22222222 3479999987      889


Q ss_pred             cccCCccccc
Q 031186          154 ATCGGRGKLS  163 (164)
Q Consensus       154 ~~CgG~G~ls  163 (164)
                      ++|||.|++.
T Consensus        72 ~~c~G~gkv~   81 (715)
T COG1107          72 PECGGTGKVL   81 (715)
T ss_pred             ccCCCceeEE
Confidence            9999999863

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.98  E-value=4.5e-06  Score=71.81  Aligned_cols=53  Identities=38%  Similarity=0.862  Sum_probs=44.9

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|.        |+.|+|.|.|....                     |+-+.+..|++|.|.     ..|..
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------------------G~~~~~~~C~~C~G~G~~~~~~C~~  202 (373)
T PRK14301        144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ---------------------GFFQIAVPCPVCRGEGRVITHPCPK  202 (373)
T ss_pred             cccCCCCCCcccCCCCCCcccCCccCeeEEEEEe---------------------eeEEEEEeCCCCCceeeecCCCCCC
Confidence            367999999983        99999999998741                     555679999999988     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       203 C~G~g~v  209 (373)
T PRK14301        203 CKGSGIV  209 (373)
T ss_pred             CCCCcee
Confidence            9999975

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.98  E-value=4.7e-06  Score=71.52  Aligned_cols=53  Identities=32%  Similarity=0.772  Sum_probs=44.3

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|.        ||.|+|.|+++..                     .|.-+.-..|++|.|.     ..|.+
T Consensus       145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~---------------------~g~~~~~~~C~~C~G~G~~~~~~C~~  203 (372)
T PRK14300        145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQ---------------------QGFFTIEQACHKCQGNGQIIKNPCKK  203 (372)
T ss_pred             ccccCCCCCcccCCCCCCccCCCccCeEEEEEe---------------------eceEEEEEeCCCCCccceEeCCCCCC
Confidence            368999999984        9999999999863                     1555566789999988     68999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       204 C~G~g~v  210 (372)
T PRK14300        204 CHGMGRY  210 (372)
T ss_pred             CCCceEE
Confidence            9999986

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.97  E-value=4.6e-06  Score=72.02  Aligned_cols=53  Identities=38%  Similarity=0.976  Sum_probs=45.0

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|.        |+.|+|.|.|....                     |+-+-...|++|.|.     ..|..
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------------------G~~~~~~~C~~C~G~G~~~~~~C~~  216 (391)
T PRK14284        158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR---------------------GFFSMASTCPECGGEGRVITDPCSV  216 (391)
T ss_pred             eccCCCCcccccCCCCCCeecCccCCeeEEEEEe---------------------ceEEEEEECCCCCCCCcccCCcCCC
Confidence            468999999984        99999999998741                     666677899999998     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       217 C~G~g~v  223 (391)
T PRK14284        217 CRGQGRI  223 (391)
T ss_pred             CCCccee
Confidence            9999975

>PRK14288 chaperone protein DnaJ; Provisional

Probab=97.96  E-value=5.2e-06  Score=71.31  Aligned_cols=52  Identities=31%  Similarity=0.865  Sum_probs=44.0

Q ss_pred             cccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccccC
Q 031186           90 KTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCATCG  157 (164)
Q Consensus        90 ~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~Cg  157 (164)
                      ..|+.|.|+|       .|+.|+|.|.|....                     |..+-...|++|.|.     ..|..|.
T Consensus       141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~---------------------g~~~~~~~C~~C~G~G~~~~~~C~~C~  199 (369)
T PRK14288        141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQ---------------------GFMSFAQTCGACQGKGKIIKTPCQACK  199 (369)
T ss_pred             ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe---------------------ceEEEEEecCCCCCCceEccccCccCC
Confidence            4899999998       499999999987631                     556777899999998     5799999


Q ss_pred             Ccccc
Q 031186          158 GRGKL  162 (164)
Q Consensus       158 G~G~l  162 (164)
                      |.|.+
T Consensus       200 G~g~v  204 (369)
T PRK14288        200 GKTYI  204 (369)
T ss_pred             CcceE
Confidence            99875

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.94  E-value=7.2e-06  Score=70.36  Aligned_cols=53  Identities=36%  Similarity=0.856  Sum_probs=44.7

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|        .|+.|+|.|.|+..                     .|+-+-...|++|.|.     ..|.+
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~---------------------~G~~~~~~~C~~C~G~G~~~~~~C~~  204 (365)
T PRK14285        146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQG---------------------GGFFRVTTTCPKCYGNGKIISNPCKS  204 (365)
T ss_pred             cccCCCCCCcccCCCCCCccCCCccCceeEEec---------------------CceeEEeeecCCCCCcccccCCCCCC
Confidence            46899999998        49999999998751                     2666778999999998     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       205 C~G~g~v  211 (365)
T PRK14285        205 CKGKGSL  211 (365)
T ss_pred             CCCCCEE
Confidence            9999965

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.93  E-value=5.9e-06  Score=71.63  Aligned_cols=53  Identities=34%  Similarity=0.829  Sum_probs=44.6

Q ss_pred             ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|.        |+.|+|.|+|....                     |..+-...|++|.|.     ..|.+
T Consensus       173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------------------g~~~~~~~C~~C~G~G~~i~~~C~~  231 (392)
T PRK14279        173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ---------------------GAFGFSEPCTDCRGTGSIIEDPCEE  231 (392)
T ss_pred             cccCCCCccccccCCCCCCCCCCCcceEEEEEEe---------------------cceEEEEecCCCCceeEEeCCcCCC
Confidence            468999999994        99999999998731                     455567999999998     68999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       232 C~G~g~v  238 (392)
T PRK14279        232 CKGTGVT  238 (392)
T ss_pred             CCCCeEE
Confidence            9999975

>PRK14283 chaperone protein DnaJ; Provisional

Probab=97.93  E-value=6.2e-06  Score=70.77  Aligned_cols=57  Identities=32%  Similarity=0.774  Sum_probs=46.3

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|++|.|+|        .|+.|+|.|.|++.                 ++...|.-+.-..|++|.|.     ..|..
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~  208 (378)
T PRK14283        146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQV-----------------RNTILGQMMNVTTCPDCQGEGKIVEKPCSN  208 (378)
T ss_pred             eccCCCCCccccCCCCCCccCCCcCCccEEEEE-----------------EeccCceEEEEEECCCCCccceecCCCCCC
Confidence            36899999987        49999999999874                 34445665566799999998     58999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       209 C~G~g~v  215 (378)
T PRK14283        209 CHGKGVV  215 (378)
T ss_pred             CCCceee
Confidence            9999975

>PRK14294 chaperone protein DnaJ; Provisional

Probab=97.92  E-value=6.9e-06  Score=70.22  Aligned_cols=53  Identities=42%  Similarity=1.024  Sum_probs=44.7

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|..|.|+|        .|+.|+|.|.+....                     |+-+-+..|++|.|.     ..|..
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------------------G~~~~~~~C~~C~G~G~~~~~~C~~  202 (366)
T PRK14294        144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ---------------------GFFSIRTTCPRCRGMGKVIVSPCKT  202 (366)
T ss_pred             cccCCCCCCccccCCCCcccCCCcCCeEEEEEEe---------------------eeEEEEeeCCCCCCcCeecCcCCCC
Confidence            46799999998        599999999998642                     455678999999998     58999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       203 C~G~g~v  209 (366)
T PRK14294        203 CHGQGRV  209 (366)
T ss_pred             CCCceEe
Confidence            9999975

>PRK14295 chaperone protein DnaJ; Provisional

Probab=97.87  E-value=9.1e-06  Score=70.42  Aligned_cols=53  Identities=32%  Similarity=0.828  Sum_probs=44.2

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ...|+.|.|+|        .|+.|+|.|.|+...                     |..+....|++|.|.     ..|..
T Consensus       166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------------------g~~~~~~~C~~C~G~G~~~~~~C~~  224 (389)
T PRK14295        166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS---------------------GGFSLSEPCPDCKGRGLIADDPCLV  224 (389)
T ss_pred             cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe---------------------cceEEEEecCCCcceeEEeccCCCC
Confidence            46799999998        499999999998741                     444567899999998     57999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|.|.+
T Consensus       225 C~G~g~~  231 (389)
T PRK14295        225 CKGSGRA  231 (389)
T ss_pred             CCCCceE
Confidence            9999975

>PRK14291 chaperone protein DnaJ; Provisional

Probab=97.70  E-value=2.7e-05  Score=67.08  Aligned_cols=53  Identities=36%  Similarity=1.027  Sum_probs=44.3

Q ss_pred             ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC----cccccc
Q 031186           89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS----RSCATC  156 (164)
Q Consensus        89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----r~C~~C  156 (164)
                      ...|..|.|+|        .||.|+|.|+|...                     -|+-+-...|++|.|.    ..|..|
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~---------------------~g~~~~~~~C~~C~G~G~~~~~C~~C  214 (382)
T PRK14291        156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR---------------------GGFFRISQTCPTCGGEGVLREPCSKC  214 (382)
T ss_pred             eccCCCCccccCCCCCCCccCCCCCCceEEEEe---------------------cceEEEEecCCCCCCceEEccCCCCC
Confidence            46799999998        49999999999874                     1445567899999998    489999


Q ss_pred             CCcccc
Q 031186          157 GGRGKL  162 (164)
Q Consensus       157 gG~G~l  162 (164)
                      .|.|.+
T Consensus       215 ~G~g~v  220 (382)
T PRK14291        215 NGRGLV  220 (382)
T ss_pred             CCCceE
Confidence            999975

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.63  E-value=3.4e-05  Score=65.82  Aligned_cols=56  Identities=36%  Similarity=0.878  Sum_probs=45.4

Q ss_pred             cccccCCCCC---------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186           90 KTCEDCGGSG---------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT  155 (164)
Q Consensus        90 ~~Ce~C~GSG---------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~  155 (164)
                      ..|+.|.|+|         .|+.|+|.|.+...                 +|-..|.-+.-..|++|.|.     ..|..
T Consensus       140 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~  202 (371)
T PRK14292        140 TECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQ-----------------ARTIFGVVETQQPCPTCRGEGQIITDPCTV  202 (371)
T ss_pred             ecCCCCcccccCCCCCCCccCCCCCCccEEEEE-----------------EeccCceEEEeeecCCCcccceecCCCCCC
Confidence            5799999988         49999999999875                 23334665556789999997     58999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus       203 C~G~g~v  209 (371)
T PRK14292        203 CRGRGRT  209 (371)
T ss_pred             CCCceEE
Confidence            9999965

>PRK14290 chaperone protein DnaJ; Provisional

Probab=97.62  E-value=3.6e-05  Score=65.84  Aligned_cols=55  Identities=33%  Similarity=0.835  Sum_probs=43.0

Q ss_pred             ccccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCC--CccccccCCCCC-----cccc
Q 031186           89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLP--KKWSYCTKCSSS-----RSCA  154 (164)
Q Consensus        89 ~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlp--kkwsyC~kCS~~-----r~C~  154 (164)
                      ...|..|.|+|       .||.|+|.|.+...                  + ..|+-  +.-..|++|.|.     ..|.
T Consensus       149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~------------------~-~~g~~~~~~~~~C~~C~G~G~~~~~~C~  209 (365)
T PRK14290        149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIV------------------R-GQGFFRMVTVTTCRTCGGRGRIPEEKCP  209 (365)
T ss_pred             cccCCCCccccCCCCCCccCCCCCCcCEEEEE------------------e-ccCeEEEEEEEeCCCCCCceeEccCCCC
Confidence            36799999999       49999999988763                  1 23442  234689999987     5899


Q ss_pred             ccCCcccc
Q 031186          155 TCGGRGKL  162 (164)
Q Consensus       155 ~CgG~G~l  162 (164)
                      .|.|+|.+
T Consensus       210 ~C~G~g~v  217 (365)
T PRK14290        210 RCNGTGTV  217 (365)
T ss_pred             CCCCceeE
Confidence            99999975

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=97.46  E-value=8.5e-05  Score=65.81  Aligned_cols=56  Identities=29%  Similarity=0.777  Sum_probs=42.1

Q ss_pred             ccccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcC-CCCccccccCCCCC-------ccc
Q 031186           89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG-LPKKWSYCTKCSSS-------RSC  153 (164)
Q Consensus        89 ~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaG-lpkkwsyC~kCS~~-------r~C  153 (164)
                      ...|..|.|+|       .|+.|+|.|.+...                  |.... .-+--..|+.|.|.       ..|
T Consensus       150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~------------------~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C  211 (421)
T PTZ00037        150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQI------------------RQMGSMIHQTQSTCNSCNGQGKIIPESKKC  211 (421)
T ss_pred             cccccccCCCCCCCCCCccCCCCCCCCeEEEE------------------EeecceeeEEEEeCCCCCCcceeccccccC
Confidence            36799999999       49999999987663                  11111 12345689999987       469


Q ss_pred             cccCCcccc
Q 031186          154 ATCGGRGKL  162 (164)
Q Consensus       154 ~~CgG~G~l  162 (164)
                      ..|.|.|.+
T Consensus       212 ~~C~G~g~v  220 (421)
T PTZ00037        212 KNCSGKGVK  220 (421)
T ss_pred             CcCCCccee
Confidence            999999975

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=96.53  E-value=0.0022  Score=43.27  Aligned_cols=27  Identities=44%  Similarity=1.032  Sum_probs=19.8

Q ss_pred             ccccccccccCCCCCC-----------------CCCccCcceee
Q 031186           85 TEIPLKTCEDCGGSGI-----------------CPECKGEGFVL  111 (164)
Q Consensus        85 ~e~~~~~Ce~C~GSGi-----------------CpeC~GeGFV~  111 (164)
                      +......|..|+|+|.                 ||.|+|.|++.
T Consensus        11 ~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen   11 PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            3456679999999993                 99999999997

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.40  E-value=0.0022  Score=52.54  Aligned_cols=25  Identities=32%  Similarity=0.840  Sum_probs=18.8

Q ss_pred             ccccccCCCCCC-------CCCccCcceeeec
Q 031186           89 LKTCEDCGGSGI-------CPECKGEGFVLKK  113 (164)
Q Consensus        89 ~~~Ce~C~GSGi-------CpeC~GeGFV~k~  113 (164)
                      ...|+.|+|+|.       |++|+|.|+|.+.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~  130 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT  130 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence            567888888872       8888888887764

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.71  E-value=0.0061  Score=49.97  Aligned_cols=15  Identities=40%  Similarity=1.134  Sum_probs=10.9

Q ss_pred             CCCCCCccCcceeee
Q 031186           98 SGICPECKGEGFVLK  112 (164)
Q Consensus        98 SGiCpeC~GeGFV~k  112 (164)
                      +-.||+|+|.|++.+
T Consensus        99 ~~~C~~C~G~G~~i~  113 (186)
T TIGR02642        99 SCKCPRCRGTGLIQR  113 (186)
T ss_pred             CCcCCCCCCeeEEec
Confidence            456777877777765

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14285 chaperone protein DnaJ; Provisional

Probab=95.53  E-value=0.0088  Score=51.61  Aligned_cols=25  Identities=40%  Similarity=1.068  Sum_probs=21.0

Q ss_pred             cccccccCCCCC-------------CCCCccCcceeee
Q 031186           88 PLKTCEDCGGSG-------------ICPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSG-------------iCpeC~GeGFV~k  112 (164)
                      ..+.|..|+|+|             .||.|+|.|++.+
T Consensus       162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~  199 (365)
T PRK14285        162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS  199 (365)
T ss_pred             CCccCCCccCceeEEecCceeEEeeecCCCCCcccccC
Confidence            356899999998             4999999998865

>PRK14300 chaperone protein DnaJ; Provisional

Probab=95.46  E-value=0.0089  Score=51.59  Aligned_cols=26  Identities=38%  Similarity=1.123  Sum_probs=21.1

Q ss_pred             cccccccCCCCCC-------------CCCccCcceeeec
Q 031186           88 PLKTCEDCGGSGI-------------CPECKGEGFVLKK  113 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-------------CpeC~GeGFV~k~  113 (164)
                      ....|..|+|+|.             |+.|+|.|++.++
T Consensus       161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~  199 (372)
T PRK14300        161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKN  199 (372)
T ss_pred             CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCC
Confidence            3568999999983             9999999988763

>PRK14284 chaperone protein DnaJ; Provisional

Probab=95.17  E-value=0.011  Score=51.32  Aligned_cols=25  Identities=56%  Similarity=1.268  Sum_probs=20.8

Q ss_pred             cccccccCCCCCC-------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-------------CpeC~GeGFV~k  112 (164)
                      ..+.|..|+|+|.             ||.|+|.|++.+
T Consensus       174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  211 (391)
T PRK14284        174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT  211 (391)
T ss_pred             CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC
Confidence            4578999999985             999999998765

>PRK14282 chaperone protein DnaJ; Provisional

Probab=95.15  E-value=0.015  Score=50.06  Aligned_cols=25  Identities=36%  Similarity=0.858  Sum_probs=20.0

Q ss_pred             cccccccCCCCCC-----------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k  112 (164)
                      ..+.|..|+|+|.                 |+.|+|.|++.+
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  209 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG  209 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC
Confidence            4578999999973                 899999998764

>PRK10767 chaperone protein DnaJ; Provisional

Probab=95.12  E-value=0.013  Score=50.15  Aligned_cols=24  Identities=50%  Similarity=1.212  Sum_probs=20.1

Q ss_pred             ccccccCCCCCC-------------CCCccCcceeee
Q 031186           89 LKTCEDCGGSGI-------------CPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSGi-------------CpeC~GeGFV~k  112 (164)
                      .+.|..|+|+|.             |+.|+|.|++.+
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  195 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK  195 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC
Confidence            468999999984             999999998765

>PRK14293 chaperone protein DnaJ; Provisional

Probab=95.07  E-value=0.017  Score=49.84  Aligned_cols=25  Identities=48%  Similarity=1.200  Sum_probs=20.5

Q ss_pred             cccccccCCCCCC-----------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k  112 (164)
                      ....|..|.|+|+                 |+.|+|.|++.+
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  200 (374)
T PRK14293        159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE  200 (374)
T ss_pred             CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec
Confidence            4567999999984                 999999998866

>PRK14278 chaperone protein DnaJ; Provisional

Probab=95.04  E-value=0.015  Score=50.34  Aligned_cols=25  Identities=48%  Similarity=1.155  Sum_probs=19.9

Q ss_pred             cccccccCCCCCC-----------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k  112 (164)
                      ....|..|.|+|.                 |+.|+|.|++.+
T Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  196 (378)
T PRK14278        155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP  196 (378)
T ss_pred             CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC
Confidence            3467999999873                 999999998765

>PRK14288 chaperone protein DnaJ; Provisional

Probab=94.99  E-value=0.019  Score=49.71  Aligned_cols=25  Identities=44%  Similarity=1.173  Sum_probs=21.5

Q ss_pred             cccccccCCCCCC-------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-------------CpeC~GeGFV~k  112 (164)
                      ..+.|..|+|+|.             ||.|+|.|++.+
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  192 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK  192 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc
Confidence            5688999999994             999999998865

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=94.90  E-value=0.017  Score=48.97  Aligned_cols=25  Identities=56%  Similarity=1.303  Sum_probs=20.9

Q ss_pred             cccccccCCCCC-----------------CCCCccCcceeee
Q 031186           88 PLKTCEDCGGSG-----------------ICPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSG-----------------iCpeC~GeGFV~k  112 (164)
                      ..+.|..|+|+|                 .|+.|+|.|++.+
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  200 (354)
T TIGR02349       159 DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK  200 (354)
T ss_pred             CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC
Confidence            367899999987                 4999999998865

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=94.84  E-value=0.021  Score=50.91  Aligned_cols=25  Identities=32%  Similarity=0.986  Sum_probs=21.4

Q ss_pred             cccccccCCCCC-----------------CCCCccCcceeee
Q 031186           88 PLKTCEDCGGSG-----------------ICPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSG-----------------iCpeC~GeGFV~k  112 (164)
                      ....|..|+|+|                 .|+.|+|.|++.+
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~  206 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP  206 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence            457899999999                 4999999999876

>PRK14296 chaperone protein DnaJ; Provisional

Probab=94.80  E-value=0.022  Score=49.46  Aligned_cols=24  Identities=38%  Similarity=1.111  Sum_probs=18.7

Q ss_pred             ccccccCCCCC-----------------CCCCccCcceeee
Q 031186           89 LKTCEDCGGSG-----------------ICPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSG-----------------iCpeC~GeGFV~k  112 (164)
                      ...|..|+|+|                 .|+.|+|.|++.+
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~  206 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK  206 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec
Confidence            46788888887                 4888888888765

>PRK14290 chaperone protein DnaJ; Provisional

Probab=94.75  E-value=0.024  Score=48.81  Aligned_cols=25  Identities=40%  Similarity=0.963  Sum_probs=20.5

Q ss_pred             cccccccCCCCC-----------------CCCCccCcceeee
Q 031186           88 PLKTCEDCGGSG-----------------ICPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSG-----------------iCpeC~GeGFV~k  112 (164)
                      ....|..|+|+|                 .|+.|+|.|++.+
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~  205 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE  205 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc
Confidence            457899999988                 4999999998854

>PRK14276 chaperone protein DnaJ; Provisional

Probab=94.74  E-value=0.018  Score=49.93  Aligned_cols=25  Identities=44%  Similarity=0.981  Sum_probs=18.6

Q ss_pred             cccccccCCCCCC-----------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k  112 (164)
                      ..+.|..|+|+|.                 |+.|+|.|++.+
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  203 (380)
T PRK14276        162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK  203 (380)
T ss_pred             CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc
Confidence            3467888888762                 888888887765

>PRK14281 chaperone protein DnaJ; Provisional

Probab=94.68  E-value=0.023  Score=49.54  Aligned_cols=25  Identities=56%  Similarity=1.171  Sum_probs=20.7

Q ss_pred             cccccccCCCCCC-----------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k  112 (164)
                      ..+.|..|+|+|.                 |+.|+|.|++.+
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  219 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK  219 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC
Confidence            4578999999883                 999999998866

>PRK14295 chaperone protein DnaJ; Provisional

Probab=94.64  E-value=0.022  Score=49.75  Aligned_cols=24  Identities=42%  Similarity=1.257  Sum_probs=20.0

Q ss_pred             ccccccCCCCCC-------------CCCccCcceeee
Q 031186           89 LKTCEDCGGSGI-------------CPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSGi-------------CpeC~GeGFV~k  112 (164)
                      .+.|..|+|+|.             |+.|+|.|++.+
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  219 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD  219 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec
Confidence            478999999873             999999998866

>PRK14301 chaperone protein DnaJ; Provisional

Probab=94.52  E-value=0.023  Score=49.27  Aligned_cols=24  Identities=58%  Similarity=1.330  Sum_probs=19.3

Q ss_pred             ccccccCCCCC-------------CCCCccCcceeee
Q 031186           89 LKTCEDCGGSG-------------ICPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSG-------------iCpeC~GeGFV~k  112 (164)
                      ...|..|+|+|             .|+.|+|.|++.+
T Consensus       161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  197 (373)
T PRK14301        161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT  197 (373)
T ss_pred             CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC
Confidence            46799999987             3888888888765

>PRK14277 chaperone protein DnaJ; Provisional

Probab=94.52  E-value=0.022  Score=49.45  Aligned_cols=25  Identities=40%  Similarity=0.955  Sum_probs=20.0

Q ss_pred             cccccccCCCCCC-----------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k  112 (164)
                      ....|..|+|+|+                 |+.|+|.|++.+
T Consensus       171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  212 (386)
T PRK14277        171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT  212 (386)
T ss_pred             CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc
Confidence            3567999999873                 899999998865

>PRK14286 chaperone protein DnaJ; Provisional

Probab=94.51  E-value=0.023  Score=49.15  Aligned_cols=24  Identities=58%  Similarity=1.395  Sum_probs=19.5

Q ss_pred             ccccccCCCCC-------------CCCCccCcceeee
Q 031186           89 LKTCEDCGGSG-------------ICPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSG-------------iCpeC~GeGFV~k  112 (164)
                      .+.|..|+|+|             .|+.|+|.|++.+
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  203 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS  203 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec
Confidence            46799999988             3888888888865

>PRK14294 chaperone protein DnaJ; Provisional

Probab=94.50  E-value=0.024  Score=48.81  Aligned_cols=25  Identities=52%  Similarity=1.220  Sum_probs=19.6

Q ss_pred             cccccccCCCCC-------------CCCCccCcceeee
Q 031186           88 PLKTCEDCGGSG-------------ICPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSG-------------iCpeC~GeGFV~k  112 (164)
                      ....|..|+|+|             .|+.|+|.|++.+
T Consensus       160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~  197 (366)
T PRK14294        160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV  197 (366)
T ss_pred             CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC
Confidence            356799999988             3999999888754

>PRK14279 chaperone protein DnaJ; Provisional

Probab=94.42  E-value=0.025  Score=49.36  Aligned_cols=25  Identities=40%  Similarity=1.104  Sum_probs=20.7

Q ss_pred             cccccccCCCCC-------------CCCCccCcceeee
Q 031186           88 PLKTCEDCGGSG-------------ICPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSG-------------iCpeC~GeGFV~k  112 (164)
                      ..+.|..|+|+|             .|+.|+|.|++.+
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~  226 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE  226 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC
Confidence            457899999998             3999999998866

>PRK14297 chaperone protein DnaJ; Provisional

Probab=93.43  E-value=0.049  Score=47.14  Aligned_cols=24  Identities=50%  Similarity=1.251  Sum_probs=18.6

Q ss_pred             ccccccCCCCC-----------------CCCCccCcceeee
Q 031186           89 LKTCEDCGGSG-----------------ICPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSG-----------------iCpeC~GeGFV~k  112 (164)
                      ...|..|+|+|                 .|+.|+|.|++.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  205 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE  205 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC
Confidence            56788888887                 3888888887765

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=93.35  E-value=0.05  Score=41.64  Aligned_cols=29  Identities=34%  Similarity=0.907  Sum_probs=24.9

Q ss_pred             cccccccccCCCCC--CCCCccCcceeeecc
Q 031186           86 EIPLKTCEDCGGSG--ICPECKGEGFVLKKL  114 (164)
Q Consensus        86 e~~~~~Ce~C~GSG--iCpeC~GeGFV~k~l  114 (164)
                      ......|..|.|+|  +|+.|+|.|++-+-|
T Consensus        72 ~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~  102 (111)
T PLN03165         72 EKEVSKCINCDGAGSLTCTTCQGSGIQPRYL  102 (111)
T ss_pred             EEEEEECCCCCCcceeeCCCCCCCEEEeeee
Confidence            34577999999999  799999999998765

>PRK14287 chaperone protein DnaJ; Provisional

Probab=93.20  E-value=0.054  Score=46.91  Aligned_cols=37  Identities=38%  Similarity=0.863  Sum_probs=28.8

Q ss_pred             CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----------------ccccccCCcccc
Q 031186          100 ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----------------RSCATCGGRGKL  162 (164)
Q Consensus       100 iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----------------r~C~~CgG~G~l  162 (164)
                      +|+.|+|.|.-..                          .+...|+.|.|+                 ..|+.|+|.|++
T Consensus       140 ~C~~C~G~G~~~~--------------------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~  193 (371)
T PRK14287        140 TCGTCHGSGAKPG--------------------------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI  193 (371)
T ss_pred             cCCCCCCcccCCC--------------------------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc
Confidence            5999999996321                          223559999987                 479999999986

>PRK14283 chaperone protein DnaJ; Provisional

Probab=93.16  E-value=0.065  Score=46.36  Aligned_cols=25  Identities=52%  Similarity=1.375  Sum_probs=19.3

Q ss_pred             cccccccCCCCCC-----------------CCCccCcceeee
Q 031186           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k  112 (164)
                      ....|..|.|+|+                 |+.|+|.|+..+
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  203 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE  203 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC
Confidence            4567888888874                 888888888754

>PRK14292 chaperone protein DnaJ; Provisional

Probab=93.12  E-value=0.089  Score=45.20  Aligned_cols=24  Identities=54%  Similarity=1.352  Sum_probs=18.9

Q ss_pred             cccccccCCCCC-----------------CCCCccCcceee
Q 031186           88 PLKTCEDCGGSG-----------------ICPECKGEGFVL  111 (164)
Q Consensus        88 ~~~~Ce~C~GSG-----------------iCpeC~GeGFV~  111 (164)
                      ....|..|+|+|                 .|+.|+|.|++.
T Consensus       156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  196 (371)
T PRK14292        156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII  196 (371)
T ss_pred             CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence            457799999987                 388888888864

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.01  E-value=0.055  Score=48.64  Aligned_cols=24  Identities=54%  Similarity=1.161  Sum_probs=13.3

Q ss_pred             cccccCCCCC-----CCCCccCcceeeec
Q 031186           90 KTCEDCGGSG-----ICPECKGEGFVLKK  113 (164)
Q Consensus        90 ~~Ce~C~GSG-----iCpeC~GeGFV~k~  113 (164)
                      .+|..|+|+|     .|+.|+|.|+|.++
T Consensus       184 ~~C~~C~G~G~~i~~pC~~C~G~G~v~~~  212 (371)
T COG0484         184 QTCPTCNGTGKIIKDPCGKCKGKGRVKKK  212 (371)
T ss_pred             EECCCCccceeECCCCCCCCCCCCeEeee
Confidence            3444444444     26666666666553

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.27  E-value=0.1  Score=47.79  Aligned_cols=20  Identities=40%  Similarity=1.150  Sum_probs=16.1

Q ss_pred             ccccccCCCCC--CCCCccCcc
Q 031186           89 LKTCEDCGGSG--ICPECKGEG  108 (164)
Q Consensus        89 ~~~Ce~C~GSG--iCpeC~GeG  108 (164)
                      -+.|-.|.|-|  .||-|+|.|
T Consensus       187 v~~ch~c~gRG~~vc~gc~g~G  208 (406)
T KOG2813|consen  187 VTFCHACLGRGAMVCHGCSGSG  208 (406)
T ss_pred             hhhhhcccCCCceeccCcCCCC
Confidence            35788888888  599998877

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=91.78  E-value=0.12  Score=50.67  Aligned_cols=36  Identities=31%  Similarity=0.706  Sum_probs=27.7

Q ss_pred             CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCccc
Q 031186           98 SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSC  153 (164)
Q Consensus        98 SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r~C  153 (164)
                      .|.||.|+|.|++.-.               |+     =+|..|..|+.|.|.|--
T Consensus       736 ~G~C~~C~G~G~~~~~---------------~~-----f~~~~~~~C~~C~G~R~~  771 (924)
T TIGR00630       736 GGRCEACQGDGVIKIE---------------MH-----FLPDVYVPCEVCKGKRYN  771 (924)
T ss_pred             CCCCCCCccceEEEEE---------------cc-----CCCCcccCCCCcCCceeC
Confidence            3789999999999853               33     167778888888887653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14298 chaperone protein DnaJ; Provisional

Probab=91.47  E-value=0.12  Score=44.94  Aligned_cols=24  Identities=50%  Similarity=1.061  Sum_probs=15.2

Q ss_pred             ccccccCCCCC-----CCCCccCcceeee
Q 031186           89 LKTCEDCGGSG-----ICPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSG-----iCpeC~GeGFV~k  112 (164)
                      ..+|..|.|.|     .|+.|+|.|+|.+
T Consensus       184 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  212 (377)
T PRK14298        184 TTTCSTCHGRGQVIESPCPVCSGTGKVRK  212 (377)
T ss_pred             EEeCCCCCCCCcccCCCCCCCCCccEEEE
Confidence            34566666666     2777777777765

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=91.30  E-value=0.13  Score=50.42  Aligned_cols=35  Identities=31%  Similarity=0.744  Sum_probs=26.0

Q ss_pred             CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCcc
Q 031186           98 SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRS  152 (164)
Q Consensus        98 SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r~  152 (164)
                      -|.||.|+|.|+|.-+               |.     =+|..|..|+.|.|.|-
T Consensus       738 ~G~C~~C~G~G~~~~~---------------~~-----f~~~~~~~C~~C~G~R~  772 (943)
T PRK00349        738 GGRCEACQGDGVIKIE---------------MH-----FLPDVYVPCDVCKGKRY  772 (943)
T ss_pred             CCCCCcccccceEEEE---------------ec-----cCCCccccCccccCccc
Confidence            3789999999999964               32     15667777777777753

>PRK14280 chaperone protein DnaJ; Provisional

Probab=90.96  E-value=0.16  Score=44.08  Aligned_cols=22  Identities=55%  Similarity=1.289  Sum_probs=14.0

Q ss_pred             ccccCCCCCC-----CCCccCcceeee
Q 031186           91 TCEDCGGSGI-----CPECKGEGFVLK  112 (164)
Q Consensus        91 ~Ce~C~GSGi-----CpeC~GeGFV~k  112 (164)
                      .|..|.|.|.     |+.|+|.|+|.+
T Consensus       188 ~C~~C~G~G~~~~~~C~~C~G~g~v~~  214 (376)
T PRK14280        188 TCPHCNGTGQEIKEKCPTCHGKGKVRK  214 (376)
T ss_pred             EcCCCCCCCceecCCCCCCCCceEEEE
Confidence            5555655552     777777777754

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.53  E-value=0.13  Score=45.90  Aligned_cols=71  Identities=28%  Similarity=0.703  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhcCCCccccccccccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCC
Q 031186           66 TVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLP  138 (164)
Q Consensus        66 ~vVGaA~t~L~rr~k~~e~~e~~~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlp  138 (164)
                      ..+|....+.+.++          ..|+.|.|+|       -|+.|+|.|.-..-                 +|.-.|.-
T Consensus       114 ~y~G~s~kl~l~~~----------~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~-----------------~~~gPg~~  166 (337)
T KOG0712|consen  114 LYMGKSKKLFLSRN----------FICSKCSGSGGKSGSAPKCTTCRGSGVQTRT-----------------RQMGPGMV  166 (337)
T ss_pred             hhcCCccceecccC----------ccCCcCCCCCCCCCCCCCCCCCCCCCceeEE-----------------Eecccccc
Confidence            34565555555555          6899999998       39999999976552                 23223332


Q ss_pred             -CccccccCCCCC--c-----cccccCCccccc
Q 031186          139 -KKWSYCTKCSSS--R-----SCATCGGRGKLS  163 (164)
Q Consensus       139 -kkwsyC~kCS~~--r-----~C~~CgG~G~ls  163 (164)
                       +-|.-|..|.+.  .     .|++|.|++.++
T Consensus       167 qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~  199 (337)
T KOG0712|consen  167 QSPQLVCDSCNGSGETISLKDRCKTCSGAKVVR  199 (337)
T ss_pred             ccceeEeccCCCccccccccccCcccccchhhh
Confidence             557789999887  3     799999998764

>PRK14289 chaperone protein DnaJ; Provisional

Probab=90.18  E-value=0.19  Score=43.51  Aligned_cols=25  Identities=44%  Similarity=1.052  Sum_probs=17.2

Q ss_pred             ccccccCCCCC-----CCCCccCcceeeec
Q 031186           89 LKTCEDCGGSG-----ICPECKGEGFVLKK  113 (164)
Q Consensus        89 ~~~Ce~C~GSG-----iCpeC~GeGFV~k~  113 (164)
                      ...|..|+|.|     .|+.|+|.|+|.+.
T Consensus       197 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~  226 (386)
T PRK14289        197 QSTCPTCNGEGKIIKKKCKKCGGEGIVYGE  226 (386)
T ss_pred             EEecCCCCccccccCcCCCCCCCCcEEeee
Confidence            45677777777     37777777777653

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=89.44  E-value=0.23  Score=40.79  Aligned_cols=41  Identities=34%  Similarity=0.656  Sum_probs=29.6

Q ss_pred             CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC
Q 031186           99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS  149 (164)
Q Consensus        99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~  149 (164)
                      ..||+|||+   +.++|.|.       +|+..-.++.+.-.++++|++|..
T Consensus        98 ~RCp~CN~~---L~~vs~ee-------v~~~Vp~~~~~~~~~f~~C~~Cgk  138 (165)
T COG1656          98 SRCPECNGE---LEKVSREE-------VKEKVPEKVYRNYEEFYRCPKCGK  138 (165)
T ss_pred             ccCcccCCE---eccCcHHH-------HhhccchhhhhcccceeECCCCcc
Confidence            468899885   44454443       345567778888899999999964

>PRK14291 chaperone protein DnaJ; Provisional

Probab=89.20  E-value=0.26  Score=42.85  Aligned_cols=22  Identities=55%  Similarity=1.404  Sum_probs=11.4

Q ss_pred             ccccCCCCC----CCCCccCcceeee
Q 031186           91 TCEDCGGSG----ICPECKGEGFVLK  112 (164)
Q Consensus        91 ~Ce~C~GSG----iCpeC~GeGFV~k  112 (164)
                      .|..|+|.|    .|+.|+|.|+|.+
T Consensus       197 ~C~~C~G~G~~~~~C~~C~G~g~v~~  222 (382)
T PRK14291        197 TCPTCGGEGVLREPCSKCNGRGLVIK  222 (382)
T ss_pred             cCCCCCCceEEccCCCCCCCCceEEe
Confidence            344444444    3666666666554

>PRK05580 primosome assembly protein PriA; Validated

Probab=86.53  E-value=0.69  Score=43.14  Aligned_cols=48  Identities=29%  Similarity=0.870  Sum_probs=36.0

Q ss_pred             ccccccccCCCCCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC----ccccccCCc
Q 031186           87 IPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS----RSCATCGGR  159 (164)
Q Consensus        87 ~~~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----r~C~~CgG~  159 (164)
                      .+...|++|+-.-.||.|++ ..+..+                        .+..-.|..|...    ..|+.||+.
T Consensus       379 ~~~~~C~~Cg~~~~C~~C~~-~l~~h~------------------------~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~  430 (679)
T PRK05580        379 APFLLCRDCGWVAECPHCDA-SLTLHR------------------------FQRRLRCHHCGYQEPIPKACPECGST  430 (679)
T ss_pred             CCceEhhhCcCccCCCCCCC-ceeEEC------------------------CCCeEECCCCcCCCCCCCCCCCCcCC
Confidence            45678999999999999998 444332                        1234568889876    579999886

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=84.50  E-value=0.69  Score=42.57  Aligned_cols=18  Identities=44%  Similarity=1.147  Sum_probs=14.6

Q ss_pred             ccccccCCCCC----------CCCCccC
Q 031186           89 LKTCEDCGGSG----------ICPECKG  106 (164)
Q Consensus        89 ~~~Ce~C~GSG----------iCpeC~G  106 (164)
                      ...|..|+|+|          -|+-|-|
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G  225 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTG  225 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccC
Confidence            56899999999          3888877

>PF14369 zf-RING_3: zinc-finger

Probab=82.73  E-value=0.66  Score=28.95  Aligned_cols=12  Identities=58%  Similarity=1.464  Sum_probs=9.5

Q ss_pred             CCCCccCcceeee
Q 031186          100 ICPECKGEGFVLK  112 (164)
Q Consensus       100 iCpeC~GeGFV~k  112 (164)
                      .||+|+| |||-+
T Consensus        23 ~CP~C~~-gFvEe   34 (35)
T PF14369_consen   23 ACPRCHG-GFVEE   34 (35)
T ss_pred             CCcCCCC-cEeEe
Confidence            4999996 99853

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=82.59  E-value=0.95  Score=47.79  Aligned_cols=33  Identities=30%  Similarity=0.554  Sum_probs=26.0

Q ss_pred             CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCc
Q 031186           99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSR  151 (164)
Q Consensus        99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r  151 (164)
                      |-||.|+|.|++.-.               |.     =||..|..|..|.|.|
T Consensus      1608 GrC~~C~G~G~i~i~---------------m~-----fl~dv~~~C~~C~G~R 1640 (1809)
T PRK00635       1608 GQCSDCWGLGYQWID---------------RA-----FYALEKRPCPTCSGFR 1640 (1809)
T ss_pred             CCCCCCccCceEEEe---------------cc-----cCCCcccCCCCCCCcC
Confidence            779999999998653               43     2888888888888876

>TIGR00595 priA primosomal protein N'

Probab=81.57  E-value=1.5  Score=39.57  Aligned_cols=48  Identities=25%  Similarity=0.635  Sum_probs=35.1

Q ss_pred             ccccccccCCCCCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC----ccccccCCc
Q 031186           87 IPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS----RSCATCGGR  159 (164)
Q Consensus        87 ~~~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----r~C~~CgG~  159 (164)
                      .+.-.|.+|+-.-.||.|++. .+..+                        -+..-.|..|...    ..|++||+.
T Consensus       211 a~~~~C~~Cg~~~~C~~C~~~-l~~h~------------------------~~~~l~Ch~Cg~~~~~~~~Cp~C~s~  262 (505)
T TIGR00595       211 SKNLLCRSCGYILCCPNCDVS-LTYHK------------------------KEGKLRCHYCGYQEPIPKTCPQCGSE  262 (505)
T ss_pred             CCeeEhhhCcCccCCCCCCCc-eEEec------------------------CCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence            356789999999999999874 22221                        1234579999877    569999875

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=80.17  E-value=0.81  Score=40.91  Aligned_cols=29  Identities=38%  Similarity=0.885  Sum_probs=24.5

Q ss_pred             ccccccccccCCCCC-------CCCCccCcceeeec
Q 031186           85 TEIPLKTCEDCGGSG-------ICPECKGEGFVLKK  113 (164)
Q Consensus        85 ~e~~~~~Ce~C~GSG-------iCpeC~GeGFV~k~  113 (164)
                      .+..+-.|.+|+|+|       .|+.|+|.+|+..+
T Consensus       166 ~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~k  201 (337)
T KOG0712|consen  166 VQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREK  201 (337)
T ss_pred             cccceeEeccCCCccccccccccCcccccchhhhhh
Confidence            467778899999998       49999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-06

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 8/32 (25%)

Query: 41 QEQE-RKLPTVSSAL----PETAASVAIAATV 67
          ++Q  +KL    ++L     ++A ++AI AT+
Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.47
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.33
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.06
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.76
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	96.72
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.66
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	96.42
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	95.49
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	91.4
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	91.1
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	80.81

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.47  E-value=5.8e-08  Score=64.41  Aligned_cols=54  Identities=35%  Similarity=0.926  Sum_probs=44.5

Q ss_pred             cccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccc
Q 031186           88 PLKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCA  154 (164)
Q Consensus        88 ~~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~  154 (164)
                      ..+.|+.|.|+|        .||.|+|.|.+...                  +   |..+....|+.|.+.     ..|.
T Consensus        10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~------------------~---g~~~~~~~C~~C~G~G~~~~~~C~   68 (79)
T 1exk_A           10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMR------------------Q---GFFAVQQTCPHCQGRGTLIKDPCN   68 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEE------------------E---TTEEEEEECTTTTTSSEECSSBCG
T ss_pred             cceECCCCcccccCCCccCCCCCCCcCeEEEEEE------------------c---CCCEEeeECcCCCCccEECCCcCC
Confidence            357899999999        49999999998763                  1   555566789999987     4799


Q ss_pred             ccCCcccc
Q 031186          155 TCGGRGKL  162 (164)
Q Consensus       155 ~CgG~G~l  162 (164)
                      +|.|.|.+
T Consensus        69 ~C~G~G~~   76 (79)
T 1exk_A           69 KCHGHGRV   76 (79)
T ss_dssp             GGTTSSEE
T ss_pred             CCCCeEEE
Confidence            99999976

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=2.6e-07  Score=64.90  Aligned_cols=54  Identities=33%  Similarity=0.776  Sum_probs=43.8

Q ss_pred             cccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccc
Q 031186           88 PLKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCA  154 (164)
Q Consensus        88 ~~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~  154 (164)
                      ....|+.|.|+|        .||.|+|.|.|....                     |.......|+.|.+.     ..|.
T Consensus        27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~---------------------G~~~~~~~C~~C~G~G~~i~~~C~   85 (104)
T 2ctt_A           27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT---------------------GPFVMRSTCRRCGGRGSIIISPCV   85 (104)
T ss_dssp             CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE---------------------TTEEEEEECSSSSSSSEECSSCCS
T ss_pred             eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe---------------------CCEEEEEECCcCCCcceECCCcCC
Confidence            347899999998        499999999987631                     434456789999996     4799


Q ss_pred             ccCCcccc
Q 031186          155 TCGGRGKL  162 (164)
Q Consensus       155 ~CgG~G~l  162 (164)
                      +|.|.|.+
T Consensus        86 ~C~G~G~v   93 (104)
T 2ctt_A           86 VCRGAGQA   93 (104)
T ss_dssp             SSSSCSEE
T ss_pred             CCCCeeEE
Confidence            99999975

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.06  E-value=1.4e-06  Score=69.80  Aligned_cols=57  Identities=23%  Similarity=0.672  Sum_probs=43.1

Q ss_pred             ccccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC-------Ccccc
Q 031186           89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS-------SRSCA  154 (164)
Q Consensus        89 ~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~-------~r~C~  154 (164)
                      ...|+.|.|+|       .||.|+|.|++...                 ++...-.-+....|++|.|       ...|.
T Consensus        38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~-----------------~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~  100 (248)
T 1nlt_A           38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVT-----------------RQMGPMIQRFQTECDVCHGTGDIIDPKDRCK  100 (248)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEE-----------------EESSSEEEEEECSCTTCSSSSSCCCTTSBCS
T ss_pred             EEeCCCCcCccCCCCCCccCCCCCCCcEEEEE-----------------EecCceEEEEEEcCCCCCCcCEEeccCCCCc
Confidence            46899999999       69999999998763                 2211111235678999998       46899


Q ss_pred             ccCCcccc
Q 031186          155 TCGGRGKL  162 (164)
Q Consensus       155 ~CgG~G~l  162 (164)
                      +|.|.|.+
T Consensus       101 ~C~G~g~~  108 (248)
T 1nlt_A          101 SCNGKKVE  108 (248)
T ss_dssp             SSTTSCEE
T ss_pred             ccCCCceE
Confidence            99999975

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.76  E-value=0.00054  Score=45.04  Aligned_cols=26  Identities=46%  Similarity=1.109  Sum_probs=23.1

Q ss_pred             cccccccCCCCCC-----CCCccCcceeeec
Q 031186           88 PLKTCEDCGGSGI-----CPECKGEGFVLKK  113 (164)
Q Consensus        88 ~~~~Ce~C~GSGi-----CpeC~GeGFV~k~  113 (164)
                      -..+|++|.|+|-     |+.|+|.|+|.++
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            3568999999995     9999999999885

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=96.72  E-value=0.0007  Score=44.58  Aligned_cols=24  Identities=50%  Similarity=1.238  Sum_probs=20.2

Q ss_pred             ccccccCCCCC-------------CCCCccCcceeee
Q 031186           89 LKTCEDCGGSG-------------ICPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSG-------------iCpeC~GeGFV~k  112 (164)
                      ...|+.|+|+|             .||.|+|.|.+.+
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~   64 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK   64 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC
Confidence            46899999998             5999999998865

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.66  E-value=0.0007  Score=44.50  Aligned_cols=26  Identities=35%  Similarity=0.924  Sum_probs=22.8

Q ss_pred             cccccccCCCCC-----CCCCccCcceeeec
Q 031186           88 PLKTCEDCGGSG-----ICPECKGEGFVLKK  113 (164)
Q Consensus        88 ~~~~Ce~C~GSG-----iCpeC~GeGFV~k~  113 (164)
                      -...|+.|+|+|     .||.|+|.|+|.+.
T Consensus         8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~   38 (53)
T 2bx9_A            8 LEVACPKCERAGEIEGTPCPACSGKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred             ccccCCCCcceeccCCCCCccCCCCccEEEE
Confidence            356899999999     59999999999883

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.42  E-value=0.0017  Score=45.37  Aligned_cols=24  Identities=42%  Similarity=1.124  Sum_probs=17.5

Q ss_pred             ccccccCCCCC-------------CCCCccCcceeee
Q 031186           89 LKTCEDCGGSG-------------ICPECKGEGFVLK  112 (164)
Q Consensus        89 ~~~Ce~C~GSG-------------iCpeC~GeGFV~k  112 (164)
                      ...|..|+|+|             .||.|+|.|.+.+
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~   81 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII   81 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC
Confidence            45788888887             4888888887654

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=95.49  E-value=0.0067  Score=48.43  Aligned_cols=23  Identities=39%  Similarity=1.087  Sum_probs=18.7

Q ss_pred             ccccccCCCCC-----------------CCCCccCcceee
Q 031186           89 LKTCEDCGGSG-----------------ICPECKGEGFVL  111 (164)
Q Consensus        89 ~~~Ce~C~GSG-----------------iCpeC~GeGFV~  111 (164)
                      ...|..|+|+|                 .||.|+|.|.+.
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i   93 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII   93 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe
Confidence            37899999888                 388888888777

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=91.40  E-value=0.069  Score=34.92  Aligned_cols=24  Identities=29%  Similarity=0.768  Sum_probs=20.0

Q ss_pred             ccccccCCCCC-----ccccccCCccccc
Q 031186          140 KWSYCTKCSSS-----RSCATCGGRGKLS  163 (164)
Q Consensus       140 kwsyC~kCS~~-----r~C~~CgG~G~ls  163 (164)
                      -...|+.|+|+     ..|++|+|.|.+.
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            35789999988     6799999999763

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=91.10  E-value=0.08  Score=34.60  Aligned_cols=27  Identities=26%  Similarity=0.688  Sum_probs=21.7

Q ss_pred             CCCccccccCCCCC-----ccccccCCccccc
Q 031186          137 LPKKWSYCTKCSSS-----RSCATCGGRGKLS  163 (164)
Q Consensus       137 lpkkwsyC~kCS~~-----r~C~~CgG~G~ls  163 (164)
                      ++..-..|+.|.|.     ..|++|+|.|++.
T Consensus         5 ~~~~~~~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A            5 TDDLEVACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             HHHHEEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             cCCccccCCCCcceeccCCCCCccCCCCccEE
Confidence            34445789999988     6899999999863

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=80.81  E-value=0.66  Score=44.60  Aligned_cols=25  Identities=44%  Similarity=0.974  Sum_probs=21.2

Q ss_pred             cccccccCCCC---------------CCCCCccCcceeee
Q 031186           88 PLKTCEDCGGS---------------GICPECKGEGFVLK  112 (164)
Q Consensus        88 ~~~~Ce~C~GS---------------GiCpeC~GeGFV~k  112 (164)
                      +.-.|++|+-+               |.||+|+|-|+++.
T Consensus       266 ~~~~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~~  305 (972)
T 2r6f_A          266 EKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLE  305 (972)
T ss_dssp             SSEECTTTCCEEECCCGGGGCSSSTTTBCTTTTSCCEEEE
T ss_pred             ccccCCCCCCcCCCCChhhcCcCCCCCCCCCCcCccceEe
Confidence            34579999986               89999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	98.41
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.28
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.44
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	95.42
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	90.15

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=5e-08  Score=64.70  Aligned_cols=56  Identities=23%  Similarity=0.702  Sum_probs=45.4

Q ss_pred             cccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-------ccccc
Q 031186           90 KTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-------RSCAT  155 (164)
Q Consensus        90 ~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-------r~C~~  155 (164)
                      ..|+.|.|+|       .|+.|+|.|+|...                 ++.-.++-+-...|+.|.|.       ..|..
T Consensus         3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~-----------------~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~   65 (74)
T d1nlta3           3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVT-----------------RQMGPMIQRFQTECDVCHGTGDIIDPKDRCKS   65 (74)
T ss_dssp             EECTTTTTCSBSTTTCCCCTTSSSSSCEEEE-----------------EESSSEEEEEECSCTTCSSSSSCCCTTSBCSS
T ss_pred             cCCcCCcccccCCCCCCCCCCCcceeeeeEE-----------------EEecCcEEEEEEECccCccceEEeCCCCCCCC
Confidence            5799999999       49999999999884                 34444555667899999886       26999


Q ss_pred             cCCcccc
Q 031186          156 CGGRGKL  162 (164)
Q Consensus       156 CgG~G~l  162 (164)
                      |.|+|.+
T Consensus        66 C~G~g~v   72 (74)
T d1nlta3          66 CNGKKVE   72 (74)
T ss_dssp             STTSCEE
T ss_pred             CCCeeEe
Confidence            9999965

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.6e-07  Score=62.47  Aligned_cols=55  Identities=35%  Similarity=0.899  Sum_probs=44.3

Q ss_pred             cccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccc
Q 031186           88 PLKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCA  154 (164)
Q Consensus        88 ~~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~  154 (164)
                      ....|++|.|+|.        |+.|+|.|.|+..                     .|....-..|+.|.|.     ..|.
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~---------------------~g~~~~~~~C~~C~G~G~~i~~~C~   68 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMR---------------------QGFFAVQQTCPHCQGRGTLIKDPCN   68 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEE---------------------ETTEEEEEECTTTTTSSEECSSBCG
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeEEEEe---------------------cccceeeEECcccCcceeECCCCCC
Confidence            3568999999983        9999999988653                     2455556689999998     3899


Q ss_pred             ccCCccccc
Q 031186          155 TCGGRGKLS  163 (164)
Q Consensus       155 ~CgG~G~ls  163 (164)
                      +|.|+|.+.
T Consensus        69 ~C~G~G~v~   77 (79)
T d1exka_          69 KCHGHGRVE   77 (79)
T ss_dssp             GGTTSSEEE
T ss_pred             CCCCceEee
Confidence            999999863

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00054  Score=44.90  Aligned_cols=22  Identities=45%  Similarity=1.096  Sum_probs=14.9

Q ss_pred             ccccCCCCC-----CCCCccCcceeee
Q 031186           91 TCEDCGGSG-----ICPECKGEGFVLK  112 (164)
Q Consensus        91 ~Ce~C~GSG-----iCpeC~GeGFV~k  112 (164)
                      +|..|+|+|     .|++|+|.|+|.|
T Consensus        52 ~C~~C~G~G~~i~~~C~~C~G~G~v~k   78 (79)
T d1exka_          52 TCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             ECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             ECcccCcceeECCCCCCCCCCceEeec
Confidence            577777766     4777777777665

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0039  Score=40.38  Aligned_cols=11  Identities=36%  Similarity=1.075  Sum_probs=6.7

Q ss_pred             CCCccCcceee
Q 031186          101 CPECKGEGFVL  111 (164)
Q Consensus       101 CpeC~GeGFV~  111 (164)
                      ||.|+|.|++.
T Consensus        47 C~~C~G~G~~i   57 (74)
T d1nlta3          47 CDVCHGTGDII   57 (74)
T ss_dssp             CTTCSSSSSCC
T ss_pred             CccCccceEEe
Confidence            66666666554

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=90.15  E-value=0.047  Score=34.74  Aligned_cols=56  Identities=20%  Similarity=0.479  Sum_probs=34.2

Q ss_pred             cccccCCCCC-----------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccc
Q 031186           90 KTCEDCGGSG-----------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSC  153 (164)
Q Consensus        90 ~~Ce~C~GSG-----------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C  153 (164)
                      ..|.+|-|+|           .|+.|.|+|.+...-               .+..  +.-..-.-|..|.+.     ..|
T Consensus        12 ~~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~---------------~~~h--~~~~~c~~CH~~H~~~~~~~~~C   74 (90)
T d1m1qa_          12 GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAV---------------HKPH--DGNLVCADCHAVHDMNVGQKPTC   74 (90)
T ss_dssp             TCGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTT---------------TGGG--TTTCCGGGTCCTTTSBTTCCCCS
T ss_pred             CCCCCcCCCCccccCCCCCCCcCcccCCCceeEeec---------------cccc--cCccccccCccccCCCCcCCCcc
Confidence            3699998876           399999998755421               1222  211222334444333     469


Q ss_pred             cccCCcccc
Q 031186          154 ATCGGRGKL  162 (164)
Q Consensus       154 ~~CgG~G~l  162 (164)
                      ..|-+.|+.
T Consensus        75 ~~CH~~gr~   83 (90)
T d1m1qa_          75 ESCHDDGRT   83 (90)
T ss_dssp             TTTCSSCCC
T ss_pred             ccccCCCcc
Confidence            999998874