Citrus Sinensis ID: 031193

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCSYQ
Secondary Structure (PSIPRED)
ccccccccccccHHHHHcccccccHHHHHHHcEEccEEEEEEEEEEccccccEEEEEEEEccccccccEEEEEEccccEEEEEEcccccEEEEEEEEEcccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHcccccHHHHHHHHHHHEcEEEEEEEEEEEcccccccEEEEEEccccccccEEEEEccccccEEEEEcccccccEEEEEEEcccccHHcccccEEEEEEEEEEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meagsngeeptswdelysinlMPSELFLKFRKEIEGFRVGVnlefynapvnEYQAKIilkplspnrpwkfiyepihqdvrilskkipvtkflNLQVGIGHNFQLHATGWKWKLTTCLVemeypgsgiRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCSYQ
Flexible Loop (DISEMBL)
meagsngeeptswdelYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCSYQ
Low Complexity Region (SEG)
MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCSYQ
Disordered region (IsUnstruct)
************WDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCS**
Disordered Region (DISOPRED)
************WDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCSYQ
Disordered Region (DISEMBL)
***********SWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCSYQ
Disordered Region (DISPRO)
**********TSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCSYQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGKFFDLLCSYQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224122550	194	predicted protein [Populus trichocarpa]	0.713	0.603	0.888	9e-57
147801241	928	hypothetical protein VITISV_041246 [Viti	0.713	0.126	0.846	6e-56
225444738	186	PREDICTED: uncharacterized protein LOC10	0.713	0.629	0.846	3e-55
255550455	168	conserved hypothetical protein [Ricinus	0.713	0.696	0.854	1e-54
449452566	187	PREDICTED: uncharacterized protein LOC10	0.713	0.625	0.829	3e-53
356564756	190	PREDICTED: uncharacterized protein LOC10	0.689	0.594	0.831	3e-52
356547937	189	PREDICTED: uncharacterized protein LOC10	0.682	0.592	0.839	3e-52
388509094	142	unknown [Lotus japonicus]	0.713	0.823	0.811	3e-51
388505064	193	unknown [Medicago truncatula]	0.670	0.569	0.756	1e-44
388496502	180	unknown [Lotus japonicus]	0.871	0.794	0.612	2e-44

>gi|224122550|ref|XP_002330509.1| predicted protein [Populus trichocarpa] gi|222872443|gb|EEF09574.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (571), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 104/117 (88%), Positives = 113/117 (96%)

Query: 1   MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILK 60
           M++GSNGEEPTSW+ELY+INL+PSELFLKFRKEIEG RVGVNLEFYNAP+NE+Q KI+LK
Sbjct: 1   MDSGSNGEEPTSWEELYNINLIPSELFLKFRKEIEGIRVGVNLEFYNAPINEFQGKIVLK 60

Query: 61  PLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
           PLSP R WKFIYEPIHQDVRILSKKIPVTKFLNLQVG+GHNFQLHATGWKWKLTTCL
Sbjct: 61  PLSPERRWKFIYEPIHQDVRILSKKIPVTKFLNLQVGVGHNFQLHATGWKWKLTTCL 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801241|emb|CAN72326.1| hypothetical protein VITISV_041246 [Vitis vinifera]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 99/117 (84%), Positives = 111/117 (94%)

Query: 1   MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILK 60
           M+AGSNGEEP SWDELY+INLMPSELFLKFRKE++G RVG+NLEFYNAPVNEYQAK++LK
Sbjct: 375 MDAGSNGEEPVSWDELYNINLMPSELFLKFRKEVQGVRVGLNLEFYNAPVNEYQAKLVLK 434

Query: 61  PLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
           PLSP+R WKFIYEP+H DV ILSKKIP+TKFLNLQVG+GH+FQLH TGWKWKLTTCL
Sbjct: 435 PLSPDRRWKFIYEPVHHDVHILSKKIPITKFLNLQVGVGHSFQLHTTGWKWKLTTCL 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444738|ref|XP_002278940.1| PREDICTED: uncharacterized protein LOC100261240 [Vitis vinifera] gi|297738567|emb|CBI27812.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/117 (84%), Positives = 111/117 (94%)

Query: 1   MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILK 60
           M+AGSNGEEP SWDELY+INLMPSELFLKFRKE++G RVG+NLEFYNAPVNEYQAK++LK
Sbjct: 1   MDAGSNGEEPVSWDELYNINLMPSELFLKFRKEVQGVRVGLNLEFYNAPVNEYQAKLVLK 60

Query: 61  PLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
           PLSP+R WKFIYEP+H DV ILSKKIP+TKFLNLQVG+GH+FQLH TGWKWKLTTCL
Sbjct: 61  PLSPDRRWKFIYEPVHHDVHILSKKIPITKFLNLQVGVGHSFQLHTTGWKWKLTTCL 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550455|ref|XP_002516278.1| conserved hypothetical protein [Ricinus communis] gi|223544764|gb|EEF46280.1| conserved hypothetical protein [Ricinus communis]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 110/117 (94%)

Query: 1   MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILK 60
           ME+ SNGEEP SW+ELY+INLMPSELF KFRKEIEG RVG+NLEFYNAP N++QAK++LK
Sbjct: 1   MESASNGEEPISWEELYNINLMPSELFFKFRKEIEGIRVGLNLEFYNAPTNDFQAKLVLK 60

Query: 61  PLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
           PLSP R WKFIYEPIHQDVRILSKKIP+TKFLNLQ+GIGHNFQLHATGWKWKLTTCL
Sbjct: 61  PLSPERRWKFIYEPIHQDVRILSKKIPITKFLNLQIGIGHNFQLHATGWKWKLTTCL 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452566|ref|XP_004144030.1| PREDICTED: uncharacterized protein LOC101208324 [Cucumis sativus] gi|449500489|ref|XP_004161111.1| PREDICTED: uncharacterized protein LOC101230051 [Cucumis sativus]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/117 (82%), Positives = 112/117 (95%)

Query: 1   MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILK 60
           M++GS+G+EPTSW++L SINLMPSELFLKFRKE++GFRVGVNLEFYNAP NEY+AK++LK
Sbjct: 1   MDSGSSGDEPTSWEDLCSINLMPSELFLKFRKELQGFRVGVNLEFYNAPCNEYEAKLVLK 60

Query: 61  PLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
           PL PN+ WKFIYEPI QD+R+LSKKIPVTKFLNLQVGIGHNFQ+HATGWKWKLTTCL
Sbjct: 61  PLYPNQRWKFIYEPIRQDIRLLSKKIPVTKFLNLQVGIGHNFQMHATGWKWKLTTCL 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564756|ref|XP_003550614.1| PREDICTED: uncharacterized protein LOC100799495 [Glycine max]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 108/113 (95%)

Query: 5   SNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSP 64
           +NGEEPTSWDELY+INLMPSELFLKFRKE++G RVG+N+EFYNAPVNEYQAK++LKPL+P
Sbjct: 8   NNGEEPTSWDELYNINLMPSELFLKFRKELQGIRVGLNMEFYNAPVNEYQAKLVLKPLTP 67

Query: 65  NRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
              WK IYEP+HQDVR+LSKKIP+TKFLNLQVG+GHNFQ+HATGWKWKLTTCL
Sbjct: 68  EWKWKIIYEPLHQDVRVLSKKIPITKFLNLQVGVGHNFQMHATGWKWKLTTCL 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547937|ref|XP_003542361.1| PREDICTED: uncharacterized protein LOC100798363 [Glycine max]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 107/112 (95%)

Query: 6   NGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPN 65
           NGEEPTSWDELY+INLMPSELFLKFRKE++G RVG+N+EFYNAPVNEYQAK++LKPL+P 
Sbjct: 8   NGEEPTSWDELYNINLMPSELFLKFRKELQGIRVGLNMEFYNAPVNEYQAKLVLKPLTPE 67

Query: 66  RPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
             WK IYEP+HQDVR+LSKKIP+TKFLNLQVG+GHNFQ+HATGWKWKLTTCL
Sbjct: 68  WKWKIIYEPLHQDVRVLSKKIPITKFLNLQVGVGHNFQMHATGWKWKLTTCL 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509094|gb|AFK42613.1| unknown [Lotus japonicus]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/117 (81%), Positives = 106/117 (90%)

Query: 1   MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILK 60
           ME  SNGEEP SWDELY+INLMPSELFLKFRKE++G RVG+N+EF+NAP NEYQAK++LK
Sbjct: 1   MEPVSNGEEPASWDELYNINLMPSELFLKFRKEVQGIRVGLNMEFHNAPSNEYQAKLVLK 60

Query: 61  PLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
           PL+P   WK IYEPIH DVRILSKKIPVTKFLNLQVG+GHNFQ+HATGWKWKL TCL
Sbjct: 61  PLTPEWKWKLIYEPIHHDVRILSKKIPVTKFLNLQVGVGHNFQMHATGWKWKLATCL 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505064|gb|AFK40598.1| unknown [Medicago truncatula]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 99/111 (89%), Gaps = 1/111 (0%)

Query: 8   EEP-TSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNR 66
           EEP TSWDELY+INLMPSELFLKFRKEI+G RV +N+E YNAP+NE QAK++ KPL+P  
Sbjct: 13  EEPATSWDELYNINLMPSELFLKFRKEIQGVRVALNMEIYNAPINECQAKLVFKPLTPEW 72

Query: 67  PWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
            WK IYEPI  DVRILSKKIP+T+F+NLQVG+GH+F++HATGWKWKLTTCL
Sbjct: 73  KWKLIYEPIQHDVRILSKKIPITRFVNLQVGVGHSFKMHATGWKWKLTTCL 123

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496502|gb|AFK36317.1| unknown [Lotus japonicus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/160 (61%), Positives = 112/160 (70%), Gaps = 17/160 (10%)

Query: 1   MEAGSNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILK 60
           ME  SNGEEP SWDELY+INLMPSELFLKFRKE++G RVG+N+EFYNAP NEYQAK++LK
Sbjct: 1   MEPVSNGEEPASWDELYNINLMPSELFLKFRKEVQGIRVGLNMEFYNAPSNEYQAKLVLK 60

Query: 61  PLSPNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQ-------VGIGHNFQLHATGWKWKL 113
           PL+P   WK IYEPIH DVRILSKKIPVT+FLNLQ       + +G+    H  G     
Sbjct: 61  PLTPEWKWKLIYEPIHHDVRILSKKIPVTRFLNLQGTIFKCTLLVGNGSSPHVWG----- 115

Query: 114 TTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLL 153
                EM YPGS IR      L  I+ L GGQ MFF +LL
Sbjct: 116 -----EMVYPGSEIRRHLVYFLALIYGLDGGQTMFFLKLL 150

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2051582	188	ORG4 "AT2G06010" [Arabidopsis	0.689	0.601	0.752	2.6e-47

TAIR|locus:2051582 ORG4 "AT2G06010" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 85/113 (75%), Positives = 100/113 (88%)

Query:     5 SNGEEPTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSP 64
             S  EEP SW++LY INLMPSELFLKFRKE++G RVGVNLE YN P N+Y AK++LKPL P
Sbjct:     6 SRPEEPPSWEDLYKINLMPSELFLKFRKELQGLRVGVNLELYNEPTNDYHAKLVLKPLCP 65

Query:    65 NRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATGWKWKLTTCL 117
              R WKFIYEP+HQ+VR+LSKKIPVT+FLNLQVG+GHNFQ++A GWKWKLT+CL
Sbjct:    66 ERKWKFIYEPLHQEVRVLSKKIPVTRFLNLQVGVGHNFQMNAIGWKWKLTSCL 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.143   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       164   0.00088  107 3  11 22  0.48    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.62u 0.18s 15.80t   Elapsed:  00:00:01
  Total cpu time:  15.62u 0.18s 15.80t   Elapsed:  00:00:01
  Start:  Fri May 10 15:18:28 2013   End:  Fri May 10 15:18:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_145000006 hypothetical protein (194 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00