Citrus Sinensis ID: 031212

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQASADLCEKK
Secondary Structure (PSIPRED)
ccEEccccccccccEEEEEEEEEEcEEEcccEEEEcccccEEEEEEcccccccccccccccEEEEEcccccEEEEEEccccccEEEEEcccccccEEEEEEEEccccccccEEEEEEEccccccccccEEEEEEcccccEEEEEccEEEEEEEEEccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEccHHcccccccEEEEEEEEEEEEccccEEEEEccccEEEEEccccccccccEccccccEEEEccccccEEEEEcccccHEEEEcccccccccEEEEEEEcccEEcccEEEEEEEccccccccccEEEEEccccccEEEEEccEEEEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
maasgpiytanspipvdlfvskkypgltrgdigfadssgdVIYRVNrtqhqsksnssqrrKRVVVVDSAGNPLISVYRQdkglwqgfkgddgeeKELIFKVNRTMKTLTRTEFEVFIvdensedsashftikgspfqksctiyrgnsiiaQSHVQASADLCEKK
Flexible Loop (DISEMBL)
maasgpiytanspipvDLFVSKKYPGLTRGDIGFADSSGDVIYRVNrtqhqsksnssqrrkrvvvvdsagnplisvyrqdkglwqgfkgddgeekelifkvnrtmktltrTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAqshvqasadlcekk
Low Complexity Region (SEG)
MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHqsksnssqrrkrvvvvDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQASADLCEKK
Disordered region (IsUnstruct)
*******YTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRV*****************VVVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDE*******HFTIKGSPFQKSCTIYRGNSIIAQ*************
Disordered Region (DISOPRED)
*AASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQA********
Disordered Region (DISEMBL)
MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNR****************VVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHV**********
Disordered Region (DISPRO)
MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQASADLCEK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQASADLCEKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q8GWL2	182	Protein LURP-one-related	yes	no	0.780	0.703	0.429	4e-23
Q9LZX1	217	Protein LURP-one-related	no	no	0.841	0.635	0.274	4e-13
Q9SF24	194	Protein LURP-one-related	no	no	0.902	0.762	0.256	1e-10
Q9ZQR8	207	Protein LURP1 OS=Arabidop	no	no	0.823	0.652	0.260	4e-08
Q9LSQ1	185	Protein LURP-one-related	no	no	0.737	0.654	0.283	2e-07
Q9LQ36	224	Protein LURP-one-related	no	no	0.786	0.575	0.246	2e-07
Q9LYM3	204	Protein LURP-one-related	no	no	0.804	0.647	0.229	0.0008

>sp|Q8GWL2|LOR7_ARATH Protein LURP-one-related 7 OS=Arabidopsis thaliana GN=At2g30270 PE=2 SV=1

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 14/142 (9%)

Query: 14  IPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPL 73
           IPVDLF SKK PGL+ GD+GFADSS  +++ + ++    KS              +G PL
Sbjct: 18  IPVDLFASKKLPGLSSGDLGFADSSEHLVFILRKSSSSLKSLLDS----------SGVPL 67

Query: 74  ISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKG 133
            S+ R   G+W+  KGD  + K+L+  V RT K  ++TE EV    E+SE+      IKG
Sbjct: 68  FSISRLHNGVWELHKGDVEKRKDLVLTVKRTSKRFSKTESEVSFAGESSEN----LVIKG 123

Query: 134 SPFQKSCTIYRGNSIIAQSHVQ 155
            PFQKSCTIY  +SI+AQ+ + 
Sbjct: 124 VPFQKSCTIYSQDSIVAQTSLM 145

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 82/153 (53%), Gaps = 15/153 (9%)

Query: 6   PIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVV 65
           P Y A  P P+D+ + +K   LT G+    D +G+++++V       K        + V+
Sbjct: 30  PKYCA--PYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKV-------KEPVFGLHDKRVL 80

Query: 66  VDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS 122
           +D +G P++++  +   +   WQ F+G   ++++L++ V R+     +T+ +VF+   N 
Sbjct: 81  LDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFL-GHNK 139

Query: 123 EDSASHFTIKGSPFQKSCTIYRGNS--IIAQSH 153
           ++    F +KGS  ++SC +Y G S  I+AQ H
Sbjct: 140 DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMH 172

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 16/164 (9%)

Query: 1   MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRR 60
           MA   P + A  P P++L + +K   LT G+    D +G+++++V        S S +R 
Sbjct: 1   MAIVSPNFCA--PYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLF---SISDKR- 54

Query: 61  KRVVVVDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRT-MKTLTRTEFEVF 116
              +++D+   P++++      L   W  ++G   ++ +L++ + R+ M  + + + ++F
Sbjct: 55  ---ILLDAYDTPILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIF 111

Query: 117 IVDENSEDSASHFTIKGSPFQKSCTIYRGNS--IIAQSHVQASA 158
           +   N E     F +KGS   +SC +Y G S  I+AQ H + +A
Sbjct: 112 LA-HNKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTA 154

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 11/146 (7%)

Query: 12  SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
           SP PV L + +K   +T G+     + G ++++V           S   KR+++ D +G 
Sbjct: 14  SPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLF------SLHGKRILL-DCSGA 66

Query: 72  PLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASH 128
            ++++  +   +   WQ F+G   EE  L++ V R+       + EVF+ + N E+    
Sbjct: 67  KVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSSMIQLAPKLEVFLAN-NVEEKICD 125

Query: 129 FTIKGSPFQKSCTIYRGNSIIAQSHV 154
           F +KG+    SC +Y G+S    +H+
Sbjct: 126 FKVKGAWLDDSCVVYAGDSDTIIAHM 151

Involved in basal defense against virulent oomycetes. Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 27/148 (18%)

Query: 13  PIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNP 72
           P P+DL ++        GD    D++G+ +++V       K+       + ++VD   +P
Sbjct: 23  PQPLDLTIT--------GD-TVKDATGNKVFKV-------KTPLFGLHNKRILVDPNDSP 66

Query: 73  LISVY-----RQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSAS 127
           ++++      + D+  WQ ++G D ++K  IF V R+     +T  EVF+    + +S+ 
Sbjct: 67  IVTMKMKVTSKHDR--WQVYRGSDLDDK--IFTVKRSSTVQLKTRVEVFLKHNQTRESSC 122

Query: 128 HFTIKGSPFQKSCTIYRGNS--IIAQSH 153
            FTIKG   +++CTIY  +S  IIAQ +
Sbjct: 123 DFTIKGRFMKRACTIYVADSTKIIAQVY 150

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 13/142 (9%)

Query: 15  PVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74
           PVDL + +K   +T G+    ++ G+++++V       K       ++ +++D  G  ++
Sbjct: 37  PVDLAIVRKVLKITDGNFVITNAEGNLLFKV-------KDPFFSLHEKRILMDGFGTKVL 89

Query: 75  SVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTI 131
           ++  +   +   W  F+G   EE +L++ V R+      T+ +VF+ D N E     + +
Sbjct: 90  TLKGKIMTMHDRWLVFRGGSTEEVDLLYTVKRSNMVQITTKLDVFLAD-NIEQKKCDYRL 148

Query: 132 KGSPFQKSCTIYRGNS--IIAQ 151
           +G   + SC +Y G+S  I+AQ
Sbjct: 149 EGVWLETSCFVYAGDSDIILAQ 170

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2

 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 12/144 (8%)

Query: 12  SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
           +P P+DL V +K    ++      D SG+++ +++             RKRV+  D AG 
Sbjct: 25  NPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAW------GFNRKRVMR-DPAGF 77

Query: 72  PLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS--EDSA 126
            ++S+ ++   L   W+   G+  E ++L+F V ++     +T  +VF+ + N+  + + 
Sbjct: 78  TILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQAVSLKTSVDVFLPENNNVKKTNT 137

Query: 127 SHFTIKGSPFQKSCTIYRGNSIIA 150
             F   G     S  +++ +++IA
Sbjct: 138 CDFHASGGYSNISFKVFKADALIA 161

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224145491	172	predicted protein [Populus trichocarpa]	0.823	0.784	0.577	8e-39
297745801	419	unnamed protein product [Vitis vinifera]	0.878	0.343	0.522	6e-37
225434402	186	PREDICTED: protein LURP-one-related 7-li	0.878	0.774	0.522	1e-36
355430070	195	hypothetical protein [Linum usitatissimu	0.878	0.738	0.503	7e-36
255553405	158	conserved hypothetical protein [Ricinus	0.847	0.879	0.493	2e-34
356553130	197	PREDICTED: protein LURP-one-related 7-li	0.890	0.741	0.442	1e-31
449444136	185	PREDICTED: protein LURP-one-related 7-li	0.804	0.713	0.496	1e-30
449493016	185	PREDICTED: protein LURP-one-related 7-li	0.804	0.713	0.496	1e-30
356500912	197	PREDICTED: protein LURP-one-related 7-li	0.871	0.725	0.437	2e-30
357491351	196	hypothetical protein MTR_5g074550 [Medic	0.890	0.744	0.391	7e-27

>gi|224145491|ref|XP_002325662.1| predicted protein [Populus trichocarpa] gi|222862537|gb|EEF00044.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 107/142 (75%), Gaps = 7/142 (4%)

Query: 14  IPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPL 73
           IPVDLFVSKK+PGL  GD+GFADS G+++++VN       S SS +R   V++D++GNPL
Sbjct: 1   IPVDLFVSKKHPGLN-GDLGFADSLGNIVFKVN---FDKSSKSSFKR---VLLDASGNPL 53

Query: 74  ISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKG 133
           I+V+R  KG WQGFKG D  EK+LIF+V RT+K LTRTE EVF+V E S +S   F +KG
Sbjct: 54  ITVFRDGKGSWQGFKGGDNREKDLIFRVKRTVKKLTRTELEVFLVGEISRESTPDFKVKG 113

Query: 134 SPFQKSCTIYRGNSIIAQSHVQ 155
            PFQ+SCTIYR +SI+AQ+ + 
Sbjct: 114 FPFQRSCTIYRSDSIVAQTSLM 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745801|emb|CBI15857.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 108/155 (69%), Gaps = 11/155 (7%)

Query: 1   MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRR 60
           MA+S   Y ++  IP DLF+SKK+PGL RG +G ADSSG ++YRVNR         S + 
Sbjct: 234 MASSALAYPSDFQIPFDLFISKKHPGLPRGYLGLADSSGTIVYRVNR--------RSPKH 285

Query: 61  KRVVVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDE 120
            R V++D+AGNPLIS+     G WQ F+G DG  ++LIF+V RT+ TLTRTEF +F+   
Sbjct: 286 NR-VLLDAAGNPLISMRGSHDGSWQCFRG-DGSGEDLIFRVERTLNTLTRTEFNIFLGGA 343

Query: 121 NSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQ 155
           N EDS + F +KG PFQ+SCTIY+GNSI+AQ+ + 
Sbjct: 344 NCEDS-TDFKMKGCPFQRSCTIYKGNSIVAQTSLM 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434402|ref|XP_002277024.1| PREDICTED: protein LURP-one-related 7-like [Vitis vinifera]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 108/155 (69%), Gaps = 11/155 (7%)

Query: 1   MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRR 60
           MA+S   Y ++  IP DLF+SKK+PGL RG +G ADSSG ++YRVNR         S + 
Sbjct: 1   MASSALAYPSDFQIPFDLFISKKHPGLPRGYLGLADSSGTIVYRVNR--------RSPKH 52

Query: 61  KRVVVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDE 120
            R V++D+AGNPLIS+     G WQ F+G DG  ++LIF+V RT+ TLTRTEF +F+   
Sbjct: 53  NR-VLLDAAGNPLISMRGSHDGSWQCFRG-DGSGEDLIFRVERTLNTLTRTEFNIFLGGA 110

Query: 121 NSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQ 155
           N EDS + F +KG PFQ+SCTIY+GNSI+AQ+ + 
Sbjct: 111 NCEDS-TDFKMKGCPFQRSCTIYKGNSIVAQTSLM 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355430070|gb|AER92596.1| hypothetical protein [Linum usitatissimum]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 109/147 (74%), Gaps = 3/147 (2%)

Query: 9   TANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS 68
            A S IPVDLFVSK +PG+ +G++GFADSSG++++RV          S Q +K  ++++S
Sbjct: 14  AAASQIPVDLFVSKNHPGVPQGNLGFADSSGELLFRVAPLPSPKAWKSRQSKK--LILNS 71

Query: 69  AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSAS- 127
           +G+PLIS++R DKG W+GF+G +  EKE++F+V RT+  L RTEFEVF+  E+S+D +S 
Sbjct: 72  SGSPLISLHRLDKGSWEGFEGGEDTEKEMLFRVQRTVNKLCRTEFEVFLAGESSQDQSSP 131

Query: 128 HFTIKGSPFQKSCTIYRGNSIIAQSHV 154
            F +KG  FQ+SCTIY G+SI+AQ+ +
Sbjct: 132 DFKVKGCCFQRSCTIYGGDSIVAQTSL 158

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553405|ref|XP_002517744.1| conserved hypothetical protein [Ricinus communis] gi|223543142|gb|EEF44676.1| conserved hypothetical protein [Ricinus communis]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 98/144 (68%), Gaps = 5/144 (3%)

Query: 8   YTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVD 67
           Y     IP+DLF+SKK+P L  G++GFADSSG++++R      +  S+S     + V++D
Sbjct: 19  YPTAPQIPMDLFISKKHPDLAHGELGFADSSGNLVFRTKYISSKRCSSS-----KWVILD 73

Query: 68  SAGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSAS 127
            + NP+IS+YRQ  G W GFKGD   E ++ FKV RT+  + RTE EVF+V ENS +SAS
Sbjct: 74  KSRNPIISIYRQKNGYWHGFKGDSEGENQMTFKVQRTLNKIFRTELEVFLVKENSGESAS 133

Query: 128 HFTIKGSPFQKSCTIYRGNSIIAQ 151
            F IKG  FQ+SC IY G++I+AQ
Sbjct: 134 DFKIKGCAFQRSCIIYGGDAIVAQ 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553130|ref|XP_003544911.1| PREDICTED: protein LURP-one-related 7-like [Glycine max]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/147 (44%), Positives = 95/147 (64%), Gaps = 1/147 (0%)

Query: 9   TANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS 68
           + N  IP+DLF SKK+ G++RG + F D SG++++RVNR      S+   + K++++ D+
Sbjct: 13  SGNWEIPIDLFGSKKHAGVSRGVLAFTDESGNIVFRVNRHPPNPNSSPLPKDKKLLL-DA 71

Query: 69  AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASH 128
           +GN L S+YR   G W+ +KG+  E KEL+F V RT+KTLTR E EV    E S D    
Sbjct: 72  SGNTLFSIYRYHNGSWKCYKGNSDENKELVFSVQRTLKTLTRVELEVLFAAERSNDEGCD 131

Query: 129 FTIKGSPFQKSCTIYRGNSIIAQSHVQ 155
             +KGSPFQ+SC IY+   ++AQS + 
Sbjct: 132 LKVKGSPFQRSCCIYKDADLVAQSSLM 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444136|ref|XP_004139831.1| PREDICTED: protein LURP-one-related 7-like [Cucumis sativus]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 99/143 (69%), Gaps = 11/143 (7%)

Query: 13  PIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNP 72
           PIP+DLF+SK++P          +SSGD+IYR+NR  H  KS+S    K ++    A +P
Sbjct: 15  PIPIDLFLSKQHPDY------LTNSSGDIIYRINR--HALKSSSVD--KILLPHADAADP 64

Query: 73  LISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIK 132
           LIS++R +K  W+GFKGD GEE  L+FKV RT+  L RTEF+VF+V  N +DS + F +K
Sbjct: 65  LISIFRVNKESWEGFKGDVGEE-NLLFKVQRTLNKLRRTEFKVFLVGGNLDDSNASFEMK 123

Query: 133 GSPFQKSCTIYRGNSIIAQSHVQ 155
           G PFQ+SCT+Y GN+I+AQ+ + 
Sbjct: 124 GWPFQRSCTVYNGNTIVAQTSLM 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493016|ref|XP_004159168.1| PREDICTED: protein LURP-one-related 7-like [Cucumis sativus]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 99/143 (69%), Gaps = 11/143 (7%)

Query: 13  PIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNP 72
           PIP+DLF+SK++P          +SSGD+IYR+NR  H  KS+S    K ++    A +P
Sbjct: 15  PIPIDLFLSKQHPDY------LTNSSGDIIYRINR--HALKSSSVD--KILLPHADAADP 64

Query: 73  LISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIK 132
           LIS++R +K  W+GFKGD GEE  L+FKV RT+  L RTEF+VF+V  N +DS + F +K
Sbjct: 65  LISIFRVNKESWEGFKGDVGEE-NLLFKVQRTLNKLRRTEFKVFLVGGNLDDSNASFEMK 123

Query: 133 GSPFQKSCTIYRGNSIIAQSHVQ 155
           G PFQ+SCT+Y GN+I+AQ+ + 
Sbjct: 124 GWPFQRSCTVYNGNTIVAQTSLM 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500912|ref|XP_003519274.1| PREDICTED: protein LURP-one-related 7-like [Glycine max]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 93/144 (64%), Gaps = 1/144 (0%)

Query: 9   TANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS 68
           + N  IP+DLF SKK+ G++RG + F D SG++++RVNR      S    + K++++ D+
Sbjct: 13  SGNWEIPIDLFGSKKHAGVSRGVLAFTDESGNIVFRVNRHPPNPNSLPLPKDKKLLL-DA 71

Query: 69  AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASH 128
           +GN L S+YR   G W+ +KG+  E KEL+F V RT+KT+TR E EV    E S D    
Sbjct: 72  SGNTLFSIYRYHNGSWKCYKGNSEENKELVFSVQRTLKTITRVELEVLFEAERSNDECCD 131

Query: 129 FTIKGSPFQKSCTIYRGNSIIAQS 152
             +KGSPF++SC IY+   ++AQS
Sbjct: 132 LKVKGSPFKRSCCIYKHVDLVAQS 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491351|ref|XP_003615963.1| hypothetical protein MTR_5g074550 [Medicago truncatula] gi|355517298|gb|AES98921.1| hypothetical protein MTR_5g074550 [Medicago truncatula]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 97/148 (65%), Gaps = 2/148 (1%)

Query: 9   TANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS 68
           T +  IP+DLF SKK+ G+ RG + F D+SG+++++V+R      S+SS +  ++++ DS
Sbjct: 11  TEDQHIPIDLFGSKKHAGVPRGILAFTDASGNIVFKVHRQPPDPNSSSSLKDTKLLL-DS 69

Query: 69  AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDS-AS 127
             NPL S++R   G+W+ +KG   E KEL+ +V RT+KT+T+ E EVF   E  +D+   
Sbjct: 70  NDNPLFSIHRHHNGIWKCYKGSGDENKELVLQVKRTVKTITKVELEVFFAGERLKDNDTC 129

Query: 128 HFTIKGSPFQKSCTIYRGNSIIAQSHVQ 155
              + GSPF++SC++Y+   ++AQS + 
Sbjct: 130 DLKVIGSPFKRSCSVYKDGDLVAQSSLM 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2065753	182	AT2G30270 "AT2G30270" [Arabido	0.762	0.686	0.438	1.4e-23
TAIR|locus:2181082	217	AT5G01750 "AT5G01750" [Arabido	0.841	0.635	0.261	5.6e-13
TAIR|locus:2081481	194	AT3G11740 "AT3G11740" [Arabido	0.902	0.762	0.237	8.4e-10
TAIR|locus:2055250	207	LURP1 "AT2G14560" [Arabidopsis	0.841	0.666	0.237	4.6e-08
TAIR|locus:2086062	185	AT3G16900 "AT3G16900" [Arabido	0.402	0.356	0.4	8.7e-08
TAIR|locus:2093242	220	AT3G15810 "AT3G15810" [Arabido	0.628	0.468	0.319	1.5e-05

TAIR|locus:2065753 AT2G30270 "AT2G30270" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 61/139 (43%), Positives = 83/139 (59%)

Query:    14 IPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHXXXXXXXXXXXXXXXXDSAGNPL 73
             IPVDLF SKK PGL+ GD+GFADSS  +++ + ++                  DS+G PL
Sbjct:    18 IPVDLFASKKLPGLSSGDLGFADSSEHLVFILRKSS----------SSLKSLLDSSGVPL 67

Query:    74 ISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKG 133
              S+ R   G+W+  KGD  + K+L+  V RT K  ++TE EV    E+SE+      IKG
Sbjct:    68 FSISRLHNGVWELHKGDVEKRKDLVLTVKRTSKRFSKTESEVSFAGESSEN----LVIKG 123

Query:   134 SPFQKSCTIYRGNSIIAQS 152
              PFQKSCTIY  +SI+AQ+
Sbjct:   124 VPFQKSCTIYSQDSIVAQT 142

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2181082 AT5G01750 "AT5G01750" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 40/153 (26%), Positives = 77/153 (50%)

Query:     6 PIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHXXXXXXXXXXXXXXX 65
             P Y A  P P+D+ + +K   LT G+    D +G+++++V                    
Sbjct:    30 PKYCA--PYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEP-------VFGLHDKRVL 80

Query:    66 XDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS 122
              D +G P++++  +   +   WQ F+G   ++++L++ V R+     +T+ +VF+   N 
Sbjct:    81 LDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFL-GHNK 139

Query:   123 EDSASHFTIKGSPFQKSCTIYRGNS--IIAQSH 153
             ++    F +KGS  ++SC +Y G S  I+AQ H
Sbjct:   140 DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMH 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2081481 AT3G11740 "AT3G11740" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 39/164 (23%), Positives = 77/164 (46%)

Query:     1 MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHXXXXXXXXXX 60
             MA   P + A  P P++L + +K   LT G+    D +G+++++V               
Sbjct:     1 MAIVSPNFCA--PYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEP-------LFSIS 51

Query:    61 XXXXXXDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRT-MKTLTRTEFEVF 116
                   D+   P++++      L   W  ++G   ++ +L++ + R+ M  + + + ++F
Sbjct:    52 DKRILLDAYDTPILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIF 111

Query:   117 IVDENSEDSASHFTIKGSPFQKSCTIYRGNS--IIAQSHVQASA 158
             +   N E     F +KGS   +SC +Y G S  I+AQ H + +A
Sbjct:   112 LA-HNKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTA 154

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055250 LURP1 "AT2G14560" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 34/143 (23%), Positives = 64/143 (44%)

Query:    12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHXXXXXXXXXXXXXXXXDSAGN 71
             SP PV L + +K   +T G+     + G ++++V                      +   
Sbjct:    14 SPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGAKVLTLRG 73

Query:    72 PLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTI 131
              +++++  D+  WQ F+G   EE  L++ V R+       + EVF+ + N E+    F +
Sbjct:    74 KMMTMH--DR--WQVFRGGSTEEGALLYTVKRSSMIQLAPKLEVFLAN-NVEEKICDFKV 128

Query:   132 KGSPFQKSCTIYRGNSIIAQSHV 154
             KG+    SC +Y G+S    +H+
Sbjct:   129 KGAWLDDSCVVYAGDSDTIIAHM 151

GO:0003674 "molecular_function" evidence=ND

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

TAIR|locus:2086062 AT3G16900 "AT3G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 28/70 (40%), Positives = 42/70 (60%)

Query:    84 WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIY 143
             WQ ++G D ++K  IF V R+     +T  EVF+    + +S+  FTIKG   +++CTIY
Sbjct:    81 WQVYRGSDLDDK--IFTVKRSSTVQLKTRVEVFLKHNQTRESSCDFTIKGRFMKRACTIY 138

Query:   144 RGNS--IIAQ 151
               +S  IIAQ
Sbjct:   139 VADSTKIIAQ 148

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093242 AT3G15810 "AT3G15810" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 38/119 (31%), Positives = 55/119 (46%)

Query:    30 GDIGFA--DSSGDVIYRVNRTQHXXXXXXXXXXXXXXXXDSAGNPLISVYRQDKGL---W 84
             GD GFA  D  GD+I+RV+                    D+ G  L++V R+   L   W
Sbjct:    44 GD-GFAAYDCRGDIIFRVD-----SYGPDTRDNDEIVLMDATGKCLLTVKRKRPTLHQRW 97

Query:    85 QGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIY 143
             +GF G+  E ++ IF V R+   + R   EV + D   E+    + I G   Q+SC IY
Sbjct:    98 EGFLGERSEGQKPIFSVRRS-SIIGRCTMEVEVYDGTGEE----YIIDGDFSQRSCLIY 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       148   0.00068  104 3  11 22  0.37    32
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.02u 0.11s 12.13t   Elapsed:  00:00:01
  Total cpu time:  12.02u 0.11s 12.13t   Elapsed:  00:00:01
  Start:  Fri May 10 16:14:53 2013   End:  Fri May 10 16:14:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIX.2731.1 hypothetical protein (172 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam04525	185	pfam04525, Tub_2, Tubby C 2	1e-24

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score = 93.7 bits (233), Expect = 1e-24
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 12  SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
           SP P DL V +K            DS+G++++RV          +       V++DS+GN
Sbjct: 10  SPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRV-------DGYAFGLSDERVLMDSSGN 62

Query: 72  PLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS----ED 124
           PL+++ R+   L   W+ ++G+  E K+ +F V R+     +T   VF    ++    ++
Sbjct: 63  PLLTIRRKKLSLHDRWEVYRGEGTEGKDPLFTVRRSSIVQLKTSSSVFSKRNSNVIVDDE 122

Query: 125 SASHFTIKGSPFQKSCTIYRGN-SIIAQSHVQASADLCEKK 164
               F IKGS   +SC IY  +  +IA+   Q S  +   K
Sbjct: 123 KNCDFDIKGSFLDRSCKIYDDSDKLIAEVKRQTSKGVFLGK 163

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	99.89
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	99.27
COG4894	159	Uncharacterized conserved protein [Function unknow	98.18
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	97.86
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	96.78
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	95.67
PF02974	99	Inh: Protease inhibitor Inh; InterPro: IPR021140 T	84.09

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=9.3e-37  Score=240.79  Aligned_cols=148  Identities=30%  Similarity=0.543  Sum_probs=89.0

Q ss_pred             CcccccccCCCCCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEec-cccCCcCCccccCCeEEEECCCCCeeEEEEec
Q 031212            1 MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNR-TQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQ   79 (164)
Q Consensus         1 ~~~v~~~~c~~~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg-~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K   79 (164)
                      .++|+++||  +++|++|+||||.+++.+|+|+|+|++|+++|+|+| +.+      ++ ++++.|+|++|+||++|++|
T Consensus         1 ~~vv~~~~~--~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~------s~-~~~~~l~D~~G~~L~~i~~k   71 (187)
T PF04525_consen    1 AVVVDAQYC--SPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFF------SI-GKKRTLMDASGNPLFTIRRK   71 (187)
T ss_dssp             --SS-GGGB---SS-EEEEEE----------EEEEETTS-EEEEEE--SCT------TB-TTEEEEE-TTS-EEEEEE--
T ss_pred             CcEECHHHc--CCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEeccc------CC-CCEEEEECCCCCEEEEEEee
Confidence            378999999  999999999999999999999999999999999999 777      77 55779999999999999998


Q ss_pred             C---CCceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCCC----CCCcceEEEEcccCCceeEEE-ECCeEEEE
Q 031212           80 D---KGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS----EDSASHFTIKGSPFQKSCTIY-RGNSIIAQ  151 (164)
Q Consensus        80 ~---~~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~----~~~~~~~~i~G~~~~~s~~I~-~~~~~VA~  151 (164)
                      +   +++|++|.+++.++++|+|+||+++.+..++++.+|+.+...    ....++|+|+|||++++|+|+ .++++||+
T Consensus        72 ~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~  151 (187)
T PF04525_consen   72 LFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAE  151 (187)
T ss_dssp             ------EEEEEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEE
T ss_pred             ecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEE
Confidence            5   499999999988888899999999767778899999874421    346789999999999999999 55799999


Q ss_pred             EeecCC
Q 031212          152 SHVQAS  157 (164)
Q Consensus       152 v~rk~~  157 (164)
                      |+||..
T Consensus       152 i~rk~~  157 (187)
T PF04525_consen  152 ISRKYS  157 (187)
T ss_dssp             EEE---
T ss_pred             Eecccc
Confidence            998765

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=8e-24  Score=160.15  Aligned_cols=119  Identities=18%  Similarity=0.336  Sum_probs=106.4

Q ss_pred             cEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC---CCceeEEecCC
Q 031212           15 PVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD---KGLWQGFKGDD   91 (164)
Q Consensus        15 ~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~---~~~w~~~~g~~   91 (164)
                      +.+|.|+||+.++++ .|.|||..|+.+|+|+|..+      ++ ++.|++.|++|.+|.+|++|+   .+++++-.|++
T Consensus         5 ~~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f------~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g   76 (159)
T COG4894           5 MITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFF------SI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG   76 (159)
T ss_pred             hHhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEE------ee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCC
Confidence            567999999888866 99999999999999999998      78 667999999999999999997   49999999985


Q ss_pred             CCCceEEEEEEecccCCCCceEEEEEecCCCCCCcceEEEEcccCCceeEEEECCeEEEEEeecC
Q 031212           92 GEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQA  156 (164)
Q Consensus        92 ~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~~~~~~~~~i~G~~~~~s~~I~~~~~~VA~v~rk~  156 (164)
                           -++.|+|+. +++|+++.+.         ..+|+|+||+|+.+|++.++++++|+|+||+
T Consensus        77 -----~~~~vrKK~-tf~Rdk~e~d---------~~~~eihGNi~d~efkl~dg~~~~aeVsKkw  126 (159)
T COG4894          77 -----TVCEVRKKV-TFSRDKFEID---------GLNWEIHGNIWDDEFKLTDGENVRAEVSKKW  126 (159)
T ss_pred             -----CEEEEEEEE-EEEeeeEEEc---------CCCeEEecceeceEEEEecCCceehhheeee
Confidence                 489999887 7778888873         3459999999999999999999999999996

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=99.27  E-value=3.9e-10  Score=90.64  Aligned_cols=131  Identities=18%  Similarity=0.231  Sum_probs=97.8

Q ss_pred             EEEEEEeeCce-------eCCCeEEEcCCCCEEEEEeccccCCcC--CccccCCeEEEECCCCCeeEEEEecCC------
Q 031212           17 DLFVSKKYPGL-------TRGDIGFADSSGDVIYRVNRTQHQSKS--NSSQRRKRVVVVDSAGNPLISVYRQDK------   81 (164)
Q Consensus        17 ~L~v~qk~~s~-------~~~~f~V~D~~G~~vfrVdg~~~~~~~--~~s~~~~~~~l~D~~G~~Llti~~K~~------   81 (164)
                      .|.|+|++-.+       ..|.|.|+|.+|+.+|.+.-..-.-.|  .++.|+-++.++|+.|+++++|+|...      
T Consensus        23 ~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~~  102 (221)
T PF03803_consen   23 QLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCCP  102 (221)
T ss_pred             EEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceeccc
Confidence            47888886542       348999999999999988544111122  345667788999999999999999753      


Q ss_pred             ---CceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCCCCCCcceEEEEcc------cCCceeEEEEC-CeEEEE
Q 031212           82 ---GLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGS------PFQKSCTIYRG-NSIIAQ  151 (164)
Q Consensus        82 ---~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~~~~~~~~~i~G~------~~~~s~~I~~~-~~~VA~  151 (164)
                         ..-+++.+.    .++|.+|++++ ...+++|+|+-+++     ..-+.|+|.      +.+..|.|++. |..||+
T Consensus       103 ~~~~~~~V~~p~----g~~iG~I~q~~-~~~~~~f~I~d~~~-----~~~~~I~gp~~~~~~~~~~~F~I~~~~~~~vg~  172 (221)
T PF03803_consen  103 CCLQEMEVESPP----GNLIGSIRQPF-SCCRPNFDIFDANG-----NPIFTIKGPCCCCSCCCDWEFEIKDPNGQEVGS  172 (221)
T ss_pred             ccceeEEEecCC----CcEEEEEEEcC-cccceEEEEEECCC-----ceEEEEeCCcceeccccceeeeeecccCcEEEE
Confidence               234443333    36999999886 66789999975543     456889987      45889999994 689999


Q ss_pred             EeecCC
Q 031212          152 SHVQAS  157 (164)
Q Consensus       152 v~rk~~  157 (164)
                      |+|+++
T Consensus       173 I~k~w~  178 (221)
T PF03803_consen  173 ITKKWS  178 (221)
T ss_pred             EEEecC
Confidence            999985

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=4.6e-06  Score=63.78  Aligned_cols=100  Identities=12%  Similarity=0.207  Sum_probs=78.9

Q ss_pred             CCCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC---CC-----
Q 031212           11 NSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD---KG-----   82 (164)
Q Consensus        11 ~~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~---~~-----   82 (164)
                      |...+..+.|.-+.|++.+ .|+++|+.|..++.++-+.+      ++.+ ++-+-|++|+ ++.+|+|.   .+     
T Consensus        25 d~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll------~l~~-~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d   95 (159)
T COG4894          25 DRDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLL------SLLP-RYEISDGGGT-VCEVRKKVTFSRDKFEID   95 (159)
T ss_pred             CCCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHh------hccc-eeEEEcCCCC-EEEEEEEEEEEeeeEEEc
Confidence            4677899999999888877 79999999999999999988      7855 6699999999 88888885   13     


Q ss_pred             --ceeEEec----C--CCCCceEEEEEEecccCCCCceEEEEEecC
Q 031212           83 --LWQGFKG----D--DGEEKELIFKVNRTMKTLTRTEFEVFIVDE  120 (164)
Q Consensus        83 --~w~~~~g----~--~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~  120 (164)
                        .|+++-.    +  -.++.+.++.|.|++ ...++.|++.+++.
T Consensus        96 ~~~~eihGNi~d~efkl~dg~~~~aeVsKkw-f~~rdTY~l~vapd  140 (159)
T COG4894          96 GLNWEIHGNIWDDEFKLTDGENVRAEVSKKW-FSWRDTYHLQVAPD  140 (159)
T ss_pred             CCCeEEecceeceEEEEecCCceehhheeee-EeccceEEEEEcCc
Confidence              3555431    1  124456899999998 66688999988653

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=97.86  E-value=0.00019  Score=56.54  Aligned_cols=60  Identities=20%  Similarity=0.342  Sum_probs=39.7

Q ss_pred             CCCcEEEEEEE-eeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCC----eeEEEEec
Q 031212           12 SPIPVDLFVSK-KYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN----PLISVYRQ   79 (164)
Q Consensus        12 ~~~~~~L~v~q-k~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~----~Llti~~K   79 (164)
                      ......|.|.. +.+++.+ .+.++|++|++++.+.-+.+      +++ .++.++++++.    +|++|+++
T Consensus        35 ~~G~~vf~V~g~~~~s~~~-~~~l~D~~G~~L~~i~~k~~------~l~-~~w~i~~~~~~~~~~~i~tvkk~   99 (187)
T PF04525_consen   35 ENGNVVFRVDGGKFFSIGK-KRTLMDASGNPLFTIRRKLF------SLR-PTWEIYRGGGSEGKKPIFTVKKK   99 (187)
T ss_dssp             TTS-EEEEEE--SCTTBTT-EEEEE-TTS-EEEEEE---------------EEEEEETT---GGGEEEEEE--
T ss_pred             CCCCEEEEEEEecccCCCC-EEEEECCCCCEEEEEEeeec------ccc-eEEEEEECCCCccCceEEEEEEe
Confidence            45678899999 8888877 99999999999999999988      784 58899999998    59999999

; PDB: 1ZXU_A 2Q4M_A.

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=96.78  E-value=0.0042  Score=49.75  Aligned_cols=79  Identities=10%  Similarity=0.177  Sum_probs=55.0

Q ss_pred             CCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecCC-----C--ceeEEecCCCCCceEEEEEE
Q 031212           30 GDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDK-----G--LWQGFKGDDGEEKELIFKVN  102 (164)
Q Consensus        30 ~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~~-----~--~w~~~~g~~~~~~~~if~Vk  102 (164)
                      ...+|++..|+++.+|.-...      .. ..++.|+|++|+++++|+....     .  .++++..+   + +.+.+|+
T Consensus       106 ~~~~V~~p~g~~iG~I~q~~~------~~-~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~~~---~-~~vg~I~  174 (221)
T PF03803_consen  106 QEMEVESPPGNLIGSIRQPFS------CC-RPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKDPN---G-QEVGSIT  174 (221)
T ss_pred             eeEEEecCCCcEEEEEEEcCc------cc-ceEEEEEECCCceEEEEeCCcceeccccceeeeeeccc---C-cEEEEEE
Confidence            467888999999999998643      34 5688999999999999988742     2  34444433   2 6899999


Q ss_pred             ecccCCC------CceEEEEEec
Q 031212          103 RTMKTLT------RTEFEVFIVD  119 (164)
Q Consensus       103 k~~~~~~------k~~~~V~l~~  119 (164)
                      |++.-+.      ...|.|.++.
T Consensus       175 k~w~G~~~e~~t~~d~f~i~Fp~  197 (221)
T PF03803_consen  175 KKWSGFCRELFTDADNFVIEFPP  197 (221)
T ss_pred             EecCCcchhhccccceEEEEcCC
Confidence            9873222      2356666654

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=95.67  E-value=0.19  Score=42.73  Aligned_cols=135  Identities=13%  Similarity=0.076  Sum_probs=80.1

Q ss_pred             cEEEEEEEeeCce----eCCCeEEEcCCCCEEEEE-eccccCCcC--CccccCCeEEEECCCCCeeEEEEecCC--Ccee
Q 031212           15 PVDLFVSKKYPGL----TRGDIGFADSSGDVIYRV-NRTQHQSKS--NSSQRRKRVVVVDSAGNPLISVYRQDK--GLWQ   85 (164)
Q Consensus        15 ~~~L~v~qk~~s~----~~~~f~V~D~~G~~vfrV-dg~~~~~~~--~~s~~~~~~~l~D~~G~~Llti~~K~~--~~w~   85 (164)
                      .+.....+.+..+    +.|.|.|.|.+|+.+|.+ +.... -+|  .++.|+-...++|.-|+++++++|...  ..  
T Consensus        80 ~~V~q~~E~~ei~tG~et~NRY~v~~~~g~~v~~~~E~S~~-~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~--  156 (292)
T KOG0621|consen   80 LMVVQQIEPLEIFTGFETANRYVVHDMYGQPLYYAMERSNV-FARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSS--  156 (292)
T ss_pred             eEEEEeeeehhhhccCccCcEEEEEcCCcChhHHHHhhchH-HHHHhhccCCcceeEeecccCcEEEEEecccccccc--
Confidence            3344444443333    348999999999988843 33210 122  445677788999999999999999863  21  


Q ss_pred             EEecC-------CCCCceEEEEEEecccCCCCceEEEEEecCCCCCCcceEEEEcc-------cCCceeEEEEC--CeEE
Q 031212           86 GFKGD-------DGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGS-------PFQKSCTIYRG--NSII  149 (164)
Q Consensus        86 ~~~g~-------~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~~~~~~~~~i~G~-------~~~~s~~I~~~--~~~V  149 (164)
                      .+.+-       .....-++..|.+.+ ....++++|.=.     +...-|.|+|.       +.+..+.|...  +.+|
T Consensus       157 ~c~~~~~~~~~v~~p~~~~lG~v~q~~-~~~~~~f~i~~~-----~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~v  230 (292)
T KOG0621|consen  157 ACALCLAQEIEIQSPPMGLLGKVLQTW-GCVNPNFHLWDR-----DGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIV  230 (292)
T ss_pred             ccccccccEEEEEcCCCceEEEEEEee-ccccceEEEEcc-----cceeEEEEEcCceeEEEeecCcceeEEEcCCCeEE
Confidence            11110       001123666666654 455667776421     12334667766       33444444443  4889


Q ss_pred             EEEeecCCc
Q 031212          150 AQSHVQASA  158 (164)
Q Consensus       150 A~v~rk~~~  158 (164)
                      ++|+|++..
T Consensus       231 g~I~k~w~g  239 (292)
T KOG0621|consen  231 GSISRKWAG  239 (292)
T ss_pred             EEEeecccc
Confidence            999999864

>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19

Probab=84.09  E-value=5.5  Score=28.26  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=28.2

Q ss_pred             ccCCeEEEECCCCCeeEEEEecCCCceeEEecCC
Q 031212           58 QRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDD   91 (164)
Q Consensus        58 ~~~~~~~l~D~~G~~Llti~~K~~~~w~~~~g~~   91 (164)
                      ..++.|.|+|++|+.|+.+.+..-.+|+....++
T Consensus        59 ~~gd~l~L~d~~G~~v~~f~~~~~g~~~g~~~~g   92 (99)
T PF02974_consen   59 PTGDGLVLTDADGSVVAFFYRSGDGRFEGQTPDG   92 (99)
T ss_dssp             EETTEEEEE-TTS-EEEEEEEECTTEEEEEECCC
T ss_pred             EcCCEEEEECCCCCEEEEEEccCCeeEEeEcCCC
Confidence            4577899999999999999999989999998764

Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
1zxu_A	217	X-Ray Structure Of Protein From Arabidopsis Thalian		6e-12

>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 Length = 217

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 6   PIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHXXXXXXXXXXXXXXX 65
           P Y A  P P+D  + +K   LT G+    D +G+++++V                    
Sbjct: 30  PKYCA--PYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEP-------VFGLHDKRVL 80
Query: 66  XDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS 122
            D +G P++++  +       WQ F+G   ++++L++ V R+     +T+ +VF+   N 
Sbjct: 81  LDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVFL-GHNK 139
Query: 123 EDSASHFTIKGSPFQKSCTIYRGNS--IIAQSH 153
           ++    F +KGS  ++SC +Y G S  I+AQ H
Sbjct: 140 DEKRCDFRVKGSWLERSCVVYAGESDAIVAQXH 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	1e-22

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score = 88.6 bits (219), Expect = 1e-22
 Identities = 40/155 (25%), Positives = 81/155 (52%), Gaps = 15/155 (9%)

Query: 2   AASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRK 61
               P Y A  P P+D+ + +K   LT G+    D +G+++++V       K        
Sbjct: 26  VVVDPKYCA--PYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKV-------KEPVFGLHD 76

Query: 62  RVVVVDSAGNPLISVYRQ---DKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIV 118
           + V++D +G P++++  +       WQ F+G   ++++L++ V R+     +T+ +VF +
Sbjct: 77  KRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVF-L 135

Query: 119 DENSEDSASHFTIKGSPFQKSCTIYRG--NSIIAQ 151
             N ++    F +KGS  ++SC +Y G  ++I+AQ
Sbjct: 136 GHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQ 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	97.8

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=6.1e-35  Score=233.88  Aligned_cols=147  Identities=26%  Similarity=0.615  Sum_probs=118.2

Q ss_pred             CcccccccCCCCCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC
Q 031212            1 MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD   80 (164)
Q Consensus         1 ~~~v~~~~c~~~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~   80 (164)
                      +|||+++||  +++|+.|+||||++++++|+|+|+|++|++||+|+|+.+      +. ++++.|+|++|++|++|++|.
T Consensus        25 ~~vv~~~~~--~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~------~~-~~~~~l~D~~G~~l~~i~rk~   95 (217)
T 1zxu_A           25 GVVVDPKYC--APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVF------GL-HDKRVLLDGSGTPVVTLREKM   95 (217)
T ss_dssp             CCSSCGGGB--CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSST------TC-CSEEEEECTTSCEEEEEEC--
T ss_pred             EEEECcccc--CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEcccc------CC-CCEEEEECCCCCEEEEEEccc
Confidence            689999999  999999999999999999999999999999999999977      55 778899999999999999996


Q ss_pred             ---CCceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCCCCCCcceEEEEcccCCceeEEEEC--CeEEEEEeec
Q 031212           81 ---KGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRG--NSIIAQSHVQ  155 (164)
Q Consensus        81 ---~~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~~~~~~~~~i~G~~~~~s~~I~~~--~~~VA~v~rk  155 (164)
                         +++|++|.+++.++++|+|+|||+..+.++++++|+++++. .++.++|+|+|+|++++|+|+++  +.+||+|+||
T Consensus        96 ~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~-~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk  174 (217)
T 1zxu_A           96 VSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNK-DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRK  174 (217)
T ss_dssp             ----CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCC-C-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC
T ss_pred             cccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCC-CCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEee
Confidence               48999999987666679999999842337889999988653 23467899999999999999999  6899999999


Q ss_pred             CC
Q 031212          156 AS  157 (164)
Q Consensus       156 ~~  157 (164)
                      ++
T Consensus       175 ~~  176 (217)
T 1zxu_A          175 HT  176 (217)
T ss_dssp             --
T ss_pred             ee
Confidence            65

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=97.80  E-value=0.00011  Score=57.99  Aligned_cols=96  Identities=21%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             CCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCC----eeEEEEec--C--CCc
Q 031212           12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN----PLISVYRQ--D--KGL   83 (164)
Q Consensus        12 ~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~----~Llti~~K--~--~~~   83 (164)
                      +.....|+|..+.+++.. .+.|+|.+|++++++.-+.+      +++ .++.++++.+.    +|++|+++  .  .+.
T Consensus        59 ~~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~------~~~-~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~  130 (217)
T 1zxu_A           59 VNGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMV------SMH-DRWQVFRGGSTDQRDLLYTVKRSSMLQLKTK  130 (217)
T ss_dssp             TTSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC-------------CEEEEEETTCCCGGGEEEEEEC-------CC
T ss_pred             CCCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEcccc------ccC-cEEEEEcCCCCCCCcEEEEEEEeccccCCCe
Confidence            557788999999888866 99999999999999999877      674 57788988765    79999998  3  378


Q ss_pred             eeEEecCCCCCceEEEEEEecccCCCCceEEEEEe
Q 031212           84 WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIV  118 (164)
Q Consensus        84 w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~  118 (164)
                      |+++.++.+.++.+.+.|+..+   +...+.|.-.
T Consensus       131 ~~V~~~~~~~~~~~~~~I~G~~---~~~~f~I~~~  162 (217)
T 1zxu_A          131 LDVFLGHNKDEKRCDFRVKGSW---LERSCVVYAG  162 (217)
T ss_dssp             EEEEETTCCC-CCCSEEEESCT---TTTCCEEEET
T ss_pred             EEEEECCCCCCCceEEEEEEeE---eCCEEEEEEC
Confidence            9998876444445667776542   3446666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	8e-24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	97.49
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	80.57

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=80.57  E-value=1  Score=31.11  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=35.4

Q ss_pred             CeEEEcCCCCEEEEEeccccCCcCCcccc-CCeEEEECCCCCeeEEEEec--C-C-CceeEEec
Q 031212           31 DIGFADSSGDVIYRVNRTQHQSKSNSSQR-RKRVVVVDSAGNPLISVYRQ--D-K-GLWQGFKG   89 (164)
Q Consensus        31 ~f~V~D~~G~~vfrVdg~~~~~~~~~s~~-~~~~~l~D~~G~~Llti~~K--~-~-~~w~~~~g   89 (164)
                      -|+++|++|+++.++.-... . +.+-.+ .=.++|+|.+|+.|+.-|..  . + +.|....|
T Consensus         2 ~~d~vd~~~~~~g~~~r~~~-~-~~~~~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~G   63 (162)
T d2o5fa1           2 RLDLVNERDEVVGQILRTDP-A-LRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVG   63 (162)
T ss_dssp             EEEEECTTSCEEEEEETTCT-T-CCGGGSEEEEEEEECTTSCEEEEEC-------CCSBCCSEE
T ss_pred             cEEEECCCCCEEEEEEHHHH-h-hCCCeEEEEEEEEEcCCCCEEEEEeccCccccccccccccC
Confidence            37899999999998876543 1 111111 12458899999988754432  1 2 68876654