Citrus Sinensis ID: 031229

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MEELRSAAEAHMDQVADLVQKLSAELRTglrpafdnfIGFFhaidwkepwlMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGsnwkrfatqnyfdshgIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED
Flexible Loop (DISEMBL)
MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWkkaelrhrarisrnked
Low Complexity Region (SEG)
MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED
Disordered region (IsUnstruct)
****************DLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAEL************
Disordered Region (DISOPRED)
**********************************DNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRW*****************
Disordered Region (DISEMBL)
************DQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHR*********
Disordered Region (DISPRO)
*****S*****MDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARIS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q641M3	152	Transmembrane protein 18	yes	no	0.766	0.822	0.368	7e-17
Q28GF5	136	Transmembrane protein 18	yes	no	0.613	0.735	0.425	3e-16
Q5F410	142	Transmembrane protein 18	yes	no	0.717	0.823	0.358	3e-16
Q3SZ36	139	Transmembrane protein 18	yes	no	0.717	0.841	0.391	6e-16
Q4V7N7	136	Transmembrane protein 18	N/A	no	0.607	0.727	0.42	2e-15
Q96B42	140	Transmembrane protein 18	yes	no	0.650	0.757	0.377	2e-14
Q6DGF8	140	Transmembrane protein 18	yes	no	0.546	0.635	0.449	1e-10
Q3TUD9	140	Transmembrane protein 18	yes	no	0.546	0.635	0.438	4e-10

>sp|Q641M3|TMM18_DANRE Transmembrane protein 18 OS=Danio rerio GN=tmem18 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 69/125 (55%)

Query: 39  GFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGS 98
            F  ++DW EPWLM L+AFH       + S K    Q+  FLL +A VY AE LN +   
Sbjct: 27  TFLQSVDWSEPWLMALLAFHVFCFAFTLLSCKYYRIQICHFLLMVAMVYSAEYLNELAAM 86

Query: 99  NWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARIS 158
           NW+ F+   YFDS G+F+S ++S PLL   +II+   ++   S +   K  +L+ +A   
Sbjct: 87  NWRSFSKFQYFDSKGMFISLVYSVPLLLNTVIIVAVWVWRTFSTMTELKILQLKRKAARE 146

Query: 159 RNKED 163
            +K+ 
Sbjct: 147 NHKKT 151

Danio rerio (taxid: 7955)

>sp|Q28GF5|TMM18_XENTR Transmembrane protein 18 OS=Xenopus tropicalis GN=tmem18 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 43  AIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKR 102
            IDWKEPWL+GL  FH + L+V   S K+   Q+  FLL +  V  AE +N     +W+ 
Sbjct: 15  PIDWKEPWLIGLAVFHILCLIVTYVSFKSYPLQICHFLLMVVLVSCAEYINEFAAMHWRS 74

Query: 103 FATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLF-SLCSL 142
           ++ Q YFDS G+F+S  +S PLL   III+V+ ++ +LC +
Sbjct: 75  YSKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTLCVM 115

Xenopus tropicalis (taxid: 8364)

>sp|Q5F410|TMM18_CHICK Transmembrane protein 18 OS=Gallus gallus GN=TMEM18 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 67/117 (57%)

Query: 45  DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
           DW EPWL+GL  FH +  ++   S ++   Q+  FL  +  VY AE +N +   NW+ F+
Sbjct: 26  DWAEPWLLGLAGFHVLCFLLTCFSFQHYRVQIGHFLCMVCLVYCAEYINELAAMNWRLFS 85

Query: 105 TQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNK 161
              YFDS G+F+S ++S PLL   III+VN ++   +++   K  + R +A   + K
Sbjct: 86  KYQYFDSRGMFISLVFSAPLLVNTIIIVVNWVYRTLNVMTELKTLQQRIKAEKDKKK 142

Gallus gallus (taxid: 9031)

>sp|Q3SZ36|TMM18_BOVIN Transmembrane protein 18 OS=Bos taurus GN=TMEM18 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 45  DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
           DW EPWL+GL  FH + L++   S +    Q+  FL  +  VY AE +N V   NW+ F+
Sbjct: 22  DWTEPWLVGLAGFHVLCLLLTCFSSQRYRLQVGHFLCLVTLVYCAEYINEVAAMNWRLFS 81

Query: 105 TQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARI-SRNKED 163
              YFDS G+F+S ++S PLL  A++I+V  L+   +L+V      LR + R  +R KE+
Sbjct: 82  KHQYFDSRGMFISLVFSAPLLLNALVIVV--LWVRKTLVVMTDLRSLREQRRARARPKEE 139

Transcription repressor. Sequence-specific ssDNA and dsDNA binding protein, with preference for GCT end CTG repeats. Cell migration modulator which enhances the glioma-specific migration ability of neural stem cells (NSC) and neural precursor cells (NPC).

Bos taurus (taxid: 9913)

>sp|Q4V7N7|TMM18_XENLA Transmembrane protein 18 OS=Xenopus laevis GN=tmem18 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 44  IDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRF 103
           IDW EPWL+GL AFH +  +V   S K+   Q+  FLL +  V  AE +N     +W+ +
Sbjct: 16  IDWTEPWLIGLAAFHILCFIVTYISFKSYPLQICHFLLMVVLVSCAEYINEFAAMHWRAY 75

Query: 104 ATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLF-SLCSL 142
           + Q YFDS G+F+S  +S PLL   III+V+ ++ +LC +
Sbjct: 76  SKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTLCVM 115

Xenopus laevis (taxid: 8355)

>sp|Q96B42|TMM18_HUMAN Transmembrane protein 18 OS=Homo sapiens GN=TMEM18 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 63/106 (59%)

Query: 45  DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
           DW EPWLMGL  FH + +++   S ++   Q+  FL  +  VY AE +N     NW+ F+
Sbjct: 22  DWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 81

Query: 105 TQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAE 150
              YFDS G+F+S ++S PLL  A+II+V  ++   +++   K A+
Sbjct: 82  KYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQ 127

Transcription repressor. Sequence-specific ssDNA and dsDNA binding protein, with preference for GCT end CTG repeats. Cell migration modulator which enhances the glioma-specific migration ability of neural stem cells (NSC) and neural precursor cells (NPC).

Homo sapiens (taxid: 9606)

>sp|Q6DGF8|TMM18_RAT Transmembrane protein 18 OS=Rattus norvegicus GN=Tmem18 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 58/89 (65%)

Query: 45  DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
           DW EPWL+GL+AFH + L++   S +    Q+  FL  +  VY AE +N V   NW+ FA
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSAQRYKLQIGHFLCLVVLVYCAEYINEVAAMNWRLFA 81

Query: 105 TQNYFDSHGIFLSALWSGPLLFIAIIILV 133
              YFDS G+F+S ++S PLLF A++I++
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAMVIVI 110

Transcription repressor. Sequence-specific ssDNA and dsDNA binding protein, with preference for GCT end CTG repeats (By similarity). Cell migration modulator which enhances the glioma-specific migration ability of neural stem cells (NSC) and neural precursor cells (NPC).

Rattus norvegicus (taxid: 10116)

>sp|Q3TUD9|TMM18_MOUSE Transmembrane protein 18 OS=Mus musculus GN=Tmem18 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 58/89 (65%)

Query: 45  DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
           DW EPWL+GL+AFH + L++   S +    Q+  FL  +  VY AE +N V   NW+ F+
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSSQRYKLQIGHFLCLVVLVYSAEYINEVAAVNWRLFS 81

Query: 105 TQNYFDSHGIFLSALWSGPLLFIAIIILV 133
              YFDS G+F+S ++S PLLF A++I++
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAMLIVI 110

Transcription repressor. Sequence-specific ssDNA and dsDNA binding protein, with preference for GCT end CTG repeats. Cell migration modulator which enhances the glioma-specific migration ability of neural stem cells (NSC) and neural precursor cells (NPC).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
351726130	163	uncharacterized protein LOC100527513 [Gl	1.0	1.0	0.754	2e-69
356499000	163	PREDICTED: transmembrane protein 18-like	1.0	1.0	0.748	2e-68
351724667	163	uncharacterized protein LOC100305910 [Gl	1.0	1.0	0.736	4e-67
297846434	163	hypothetical protein ARALYDRAFT_473588 [	1.0	1.0	0.754	2e-66
388494856	163	unknown [Lotus japonicus] gi|388496944|g	1.0	1.0	0.723	3e-65
255571806	163	conserved hypothetical protein [Ricinus	1.0	1.0	0.785	3e-65
18399227	163	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.742	4e-65
21554376	163	unknown [Arabidopsis thaliana]	1.0	1.0	0.736	1e-64
449484013	163	PREDICTED: transmembrane protein 18-like	1.0	1.0	0.736	8e-63
224135487	158	predicted protein [Populus trichocarpa]	0.969	1.0	0.746	6e-62

>gi|351726130|ref|NP_001237116.1| uncharacterized protein LOC100527513 [Glycine max] gi|255632518|gb|ACU16609.1| unknown [Glycine max]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 143/163 (87%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           MEEL+SA E HMD +ADLVQKLS++LR G RPA+DNFIGFFHAIDWKEPWLMGL+ FH V
Sbjct: 1   MEELKSAMEEHMDLMADLVQKLSSDLRAGFRPAYDNFIGFFHAIDWKEPWLMGLLGFHVV 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL+VAI SRK  NFQM+LFLL LAGVYFAE+LNR LG NWK F++QNYFD  G+F+S LW
Sbjct: 61  LLLVAIISRKKTNFQMFLFLLTLAGVYFAESLNRFLGKNWKSFSSQNYFDPRGLFMSVLW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL I++IIL+NTLFSLC +IVRWK+AELRHRAR +RNK+D
Sbjct: 121 SGPLLVISMIILINTLFSLCYMIVRWKRAELRHRARAARNKQD 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499000|ref|XP_003518332.1| PREDICTED: transmembrane protein 18-like [Glycine max]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/163 (74%), Positives = 141/163 (86%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           MEELRSA E HMD +ADLVQK S++LR G RPA+DNFIGFFHAIDWKEPWLMGL+ FH V
Sbjct: 1   MEELRSAMEEHMDLMADLVQKFSSDLRAGFRPAYDNFIGFFHAIDWKEPWLMGLLGFHVV 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL+VAI SRK  NFQM+LFLL LAGVY AE+LNR LG NWK F++QNYFD  G+F+S LW
Sbjct: 61  LLLVAIISRKKTNFQMFLFLLTLAGVYLAESLNRFLGKNWKNFSSQNYFDPSGLFMSVLW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL I++IIL+NTLFSLC +IVRWK+AELRHRAR +RNK+D
Sbjct: 121 SGPLLVISMIILINTLFSLCYMIVRWKRAELRHRARAARNKQD 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724667|ref|NP_001238601.1| uncharacterized protein LOC100305910 [Glycine max] gi|255626951|gb|ACU13820.1| unknown [Glycine max]

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/163 (73%), Positives = 139/163 (85%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           MEEL+SA E HMD +ADLVQKLS++LR G RPA+DNFIGFF+AIDWKEPWLM L+ FH V
Sbjct: 1   MEELKSAMEEHMDLMADLVQKLSSDLRAGFRPAYDNFIGFFYAIDWKEPWLMALLGFHVV 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL+V I SRK  NFQM+LFLL LAGVY AE LNR LG NWK F++QNYFD  G+F+S LW
Sbjct: 61  LLLVTIISRKKTNFQMFLFLLTLAGVYLAERLNRFLGKNWKSFSSQNYFDPSGLFMSVLW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL I++IIL+NTLFSLC LIVRWK+AELRHRAR +RNK+D
Sbjct: 121 SGPLLVISMIILINTLFSLCYLIVRWKRAELRHRARAARNKQD 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846434|ref|XP_002891098.1| hypothetical protein ARALYDRAFT_473588 [Arabidopsis lyrata subsp. lyrata] gi|297336940|gb|EFH67357.1| hypothetical protein ARALYDRAFT_473588 [Arabidopsis lyrata subsp. lyrata]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 144/163 (88%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           MEE+RSA E  MD VADLV+KLS ELRTG +PA+DNF+GFFHAIDWKEPW+MGLMAFH +
Sbjct: 1   MEEIRSAMEKQMDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL+V + SR++LNF M+LFLLALAGVYFAENLNR L  NWK F+TQNYFDS G+FLS LW
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLALAGVYFAENLNRELRKNWKSFSTQNYFDSQGVFLSVLW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL IA+IIL+NTLFSLC LIV+WK+AELRHRAR++R KE+
Sbjct: 121 SGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRARLARTKEE 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494856|gb|AFK35494.1| unknown [Lotus japonicus] gi|388496944|gb|AFK36538.1| unknown [Lotus japonicus]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 139/163 (85%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           M+EL+SA + HMD +ADLVQKLS+ELR+GLRPA+DNFIGFFHAIDWKEP+L+GL+ FH V
Sbjct: 1   MDELKSALDEHMDLMADLVQKLSSELRSGLRPAYDNFIGFFHAIDWKEPFLIGLLTFHAV 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL+V + SRKN NFQM LFLL L GVY AE LN V+G NWK FA QNYFD  G+F+S LW
Sbjct: 61  LLLVTVISRKNTNFQMCLFLLTLIGVYLAERLNSVMGKNWKSFAAQNYFDPSGLFMSVLW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL IA+IILVNTLFSLC LIV+WK+AELRHRAR + +K+D
Sbjct: 121 SGPLLVIAMIILVNTLFSLCYLIVKWKRAELRHRARAASSKQD 163

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571806|ref|XP_002526846.1| conserved hypothetical protein [Ricinus communis] gi|223533850|gb|EEF35581.1| conserved hypothetical protein [Ricinus communis]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 147/163 (90%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           M+ELRSA E H +Q+ADLVQKLS+ELR+GLRPA+DNFIGFFHAIDW EPWLMGL+AFH +
Sbjct: 1   MDELRSAFEDHFEQMADLVQKLSSELRSGLRPAYDNFIGFFHAIDWTEPWLMGLIAFHVM 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL++AI SRK++NFQM LFLLAL GVYFAE LN+VLG NWK FA+QNYFD  G+FLSALW
Sbjct: 61  LLLLAIISRKHVNFQMCLFLLALGGVYFAERLNKVLGDNWKSFASQNYFDPQGLFLSALW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL IAIIIL+NTLFSLC LIVRWK+AELRHRAR+S NK+D
Sbjct: 121 SGPLLIIAIIILINTLFSLCYLIVRWKRAELRHRARLSHNKQD 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399227|ref|NP_564444.1| uncharacterized protein [Arabidopsis thaliana] gi|51970778|dbj|BAD44081.1| unnamed protein product [Arabidopsis thaliana] gi|51971505|dbj|BAD44417.1| unnamed protein product [Arabidopsis thaliana] gi|194708816|gb|ACF88492.1| At1g34350 [Arabidopsis thaliana] gi|332193578|gb|AEE31699.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/163 (74%), Positives = 144/163 (88%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           MEE+RSA E  +D VADLV+KLS ELRTG +PA+DNF+GFFHAIDWKEPW+MGLMAFH +
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL+V + SR++LNF M+LFLLALAGVYFAENLNR L  NWK F+TQNYFDS+G+FLS LW
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLALAGVYFAENLNRELRKNWKSFSTQNYFDSNGVFLSTLW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL IA+IIL+NTLFSLC LIV+WK+AELRHRAR++  KE+
Sbjct: 121 SGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRARLAHTKEE 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554376|gb|AAM63483.1| unknown [Arabidopsis thaliana]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/163 (73%), Positives = 144/163 (88%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           MEE+RSA E  +D VADLV+KLS ELRTG +PA+DNF+GFFHAI+WKEPW+MGLMAFH +
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAINWKEPWIMGLMAFHAL 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL+V + SR++LNF M+LFLLALAGVYFAENLNR L  NWK F+TQNYFDS+G+FLS LW
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLALAGVYFAENLNRELRKNWKSFSTQNYFDSNGVFLSTLW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL IA+IIL+NTLFSLC LIV+WK+AELRHRAR++  KE+
Sbjct: 121 SGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRARLAHTKEE 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484013|ref|XP_004156758.1| PREDICTED: transmembrane protein 18-like [Cucumis sativus]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 120/163 (73%), Positives = 145/163 (88%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           M+ELRS  E HMDQ++DL+QKLS+ELR+GLRPA DNFIGFFHAIDWKEPWLMGL+ FH +
Sbjct: 1   MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL++ I +RK  NFQM+LFLLALAGVYFAE +N +L  NWK FATQNYFD +G+FLSALW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAEIINGILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
           SGPLL I++IIL+NTLF+LC L+VRWK+AELRHRAR+S++KED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135487|ref|XP_002327230.1| predicted protein [Populus trichocarpa] gi|222835600|gb|EEE74035.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (616), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/158 (74%), Positives = 138/158 (87%)

Query: 1   MEELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFV 60
           MEEL+SA EAHMDQ+ADLVQKLS+ELR+G RPA DNFIGFFHAIDW EPWLMGL+ FH  
Sbjct: 1   MEELKSALEAHMDQMADLVQKLSSELRSGFRPAIDNFIGFFHAIDWTEPWLMGLIGFHLA 60

Query: 61  LLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALW 120
           LL++ + SRK++NFQM  FL+ALAGVY +E LNRVLG NW+ FA+QNYFD HG+FLS LW
Sbjct: 61  LLILTVVSRKHINFQMSFFLVALAGVYLSERLNRVLGDNWRSFASQNYFDPHGLFLSVLW 120

Query: 121 SGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARIS 158
           SGPLL IA IIL+NTLFSLC +IVRWK+AELRHRAR++
Sbjct: 121 SGPLLIIATIILINTLFSLCFMIVRWKRAELRHRARLA 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
FB|FBgn0050051	151	CG30051 [Drosophila melanogast	0.760	0.821	0.416	2e-24
RGD|1359389	140	Tmem18 "transmembrane protein	0.730	0.85	0.386	1.2e-19
UNIPROTKB|Q96B42	140	TMEM18 "Transmembrane protein	0.730	0.85	0.378	8.3e-19
MGI|MGI:2387176	140	Tmem18 "transmembrane protein	0.730	0.85	0.369	1.1e-18
ZFIN|ZDB-GENE-040927-26	152	tmem18 "transmembrane protein	0.754	0.809	0.373	1.1e-18
UNIPROTKB|Q28GF5	136	tmem18 "Transmembrane protein	0.736	0.882	0.388	3.6e-18
UNIPROTKB|Q3SZ36	139	TMEM18 "Transmembrane protein	0.717	0.841	0.391	1.2e-17
UNIPROTKB|Q4V7N7	136	tmem18 "Transmembrane protein	0.736	0.882	0.380	1.6e-17
UNIPROTKB|Q5F410	142	TMEM18 "Transmembrane protein	0.717	0.823	0.358	2e-17

FB|FBgn0050051 CG30051 [Drosophila melanogaster (taxid:7227)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 52/125 (41%), Positives = 81/125 (64%)

Query:    40 FFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSN 99
             F  +IDWK+PWL+GL+  H +    A+ SR + NFQ++LFL+ L  VYF E++N    +N
Sbjct:    17 FLLSIDWKDPWLIGLILAHILTTTTALLSRNSSNFQVFLFLVLLLAVYFTESINEFAANN 76

Query:   100 WKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISR 159
             W  F+ Q YFDS+G+F+S ++S P+L   ++++   L++   L+V  K A+L+ RAR  R
Sbjct:    77 WSSFSRQQYFDSNGLFISTVFSIPILLNCMLLIGTWLYNSTQLMVTLKTAQLKERARKER 136

Query:   160 N-KED 163
               K D
Sbjct:   137 QTKAD 141

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1359389 Tmem18 "transmembrane protein 18" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 46/119 (38%), Positives = 71/119 (59%)

Query:    45 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
             DW EPWL+GL+AFH + L++   S +    Q+  FL  +  VY AE +N V   NW+ FA
Sbjct:    22 DWTEPWLLGLLAFHLLCLLLTCFSAQRYKLQIGHFLCLVVLVYCAEYINEVAAMNWRLFA 81

Query:   105 TQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
                YFDS G+F+S ++S PLLF A++I++  +    +++   K  + R + R  R KE+
Sbjct:    82 KYQYFDSRGMFISLVFSAPLLFNAMVIVIMWVRKTLTVMSDLKNLQERRKERKRRRKEE 140

GO:0003677 "DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=ISO;ISS;IDA

GO:0031965 "nuclear membrane" evidence=ISO;ISS

UNIPROTKB|Q96B42 TMEM18 "Transmembrane protein 18" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 45/119 (37%), Positives = 70/119 (58%)

Query:    45 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
             DW EPWLMGL  FH + +++   S ++   Q+  FL  +  VY AE +N     NW+ F+
Sbjct:    22 DWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 81

Query:   105 TQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
                YFDS G+F+S ++S PLL  A+II+V  ++   +++   K A+ R + +  R KED
Sbjct:    82 KYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKKRRRKED 140

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0016477 "cell migration" evidence=IDA

MGI|MGI:2387176 Tmem18 "transmembrane protein 18" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 44/119 (36%), Positives = 70/119 (58%)

Query:    45 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
             DW EPWL+GL+AFH + L++   S +    Q+  FL  +  VY AE +N V   NW+ F+
Sbjct:    22 DWTEPWLLGLLAFHLLCLLLTCFSSQRYKLQIGHFLCLVVLVYSAEYINEVAAVNWRLFS 81

Query:   105 TQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 163
                YFDS G+F+S ++S PLLF A++I++  +    +++   K  +   + R  R KE+
Sbjct:    82 KYQYFDSRGMFISLVFSAPLLFNAMLIVIMWVRKTLTVMTDLKTLQEERKERRRRRKEE 140

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

ZFIN|ZDB-GENE-040927-26 tmem18 "transmembrane protein 18" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/123 (37%), Positives = 69/123 (56%)

Query:    40 FFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSN 99
             F  ++DW EPWLM L+AFH       + S K    Q+  FLL +A VY AE LN +   N
Sbjct:    28 FLQSVDWSEPWLMALLAFHVFCFAFTLLSCKYYRIQICHFLLMVAMVYSAEYLNELAAMN 87

Query:   100 WKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISR 159
             W+ F+   YFDS G+F+S ++S PLL   +II+   ++   S +   K  +L+ +A    
Sbjct:    88 WRSFSKFQYFDSKGMFISLVYSVPLLLNTVIIVAVWVWRTFSTMTELKILQLKRKAAREN 147

Query:   160 NKE 162
             +K+
Sbjct:   148 HKK 150

GO:0031965 "nuclear membrane" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q28GF5 tmem18 "Transmembrane protein 18" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 47/121 (38%), Positives = 71/121 (58%)

Query:    44 IDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRF 103
             IDWKEPWL+GL  FH + L+V   S K+   Q+  FLL +  V  AE +N     +W+ +
Sbjct:    16 IDWKEPWLIGLAVFHILCLIVTYVSFKSYPLQICHFLLMVVLVSCAEYINEFAAMHWRSY 75

Query:   104 ATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLF-SLCSLIVRWKKAELRHRARISRNKE 162
             + Q YFDS G+F+S  +S PLL   III+V+ ++ +LC +       + R  +R  R K+
Sbjct:    76 SKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTLCVMTELKTLQQKRKESREKRKKK 135

Query:   163 D 163
             +
Sbjct:   136 E 136

GO:0031965 "nuclear membrane" evidence=ISS

UNIPROTKB|Q3SZ36 TMEM18 "Transmembrane protein 18" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 47/120 (39%), Positives = 70/120 (58%)

Query:    45 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
             DW EPWL+GL  FH + L++   S +    Q+  FL  +  VY AE +N V   NW+ F+
Sbjct:    22 DWTEPWLVGLAGFHVLCLLLTCFSSQRYRLQVGHFLCLVTLVYCAEYINEVAAMNWRLFS 81

Query:   105 TQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARI-SRNKED 163
                YFDS G+F+S ++S PLL  A++I+V  L+   +L+V      LR + R  +R KE+
Sbjct:    82 KHQYFDSRGMFISLVFSAPLLLNALVIVV--LWVRKTLVVMTDLRSLREQRRARARPKEE 139

GO:0031965 "nuclear membrane" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q4V7N7 tmem18 "Transmembrane protein 18" [Xenopus laevis (taxid:8355)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/121 (38%), Positives = 70/121 (57%)

Query:    44 IDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRF 103
             IDW EPWL+GL AFH +  +V   S K+   Q+  FLL +  V  AE +N     +W+ +
Sbjct:    16 IDWTEPWLIGLAAFHILCFIVTYISFKSYPLQICHFLLMVVLVSCAEYINEFAAMHWRAY 75

Query:   104 ATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLF-SLCSLIVRWKKAELRHRARISRNKE 162
             + Q YFDS G+F+S  +S PLL   III+V+ ++ +LC +       + R  +R  R K+
Sbjct:    76 SKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTLCVMTELKTLQQKRKESREKRKKK 135

Query:   163 D 163
             +
Sbjct:   136 E 136

GO:0031965 "nuclear membrane" evidence=ISS

UNIPROTKB|Q5F410 TMEM18 "Transmembrane protein 18" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 42/117 (35%), Positives = 67/117 (57%)

Query:    45 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFA 104
             DW EPWL+GL  FH +  ++   S ++   Q+  FL  +  VY AE +N +   NW+ F+
Sbjct:    26 DWAEPWLLGLAGFHVLCFLLTCFSFQHYRVQIGHFLCMVCLVYCAEYINELAAMNWRLFS 85

Query:   105 TQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNK 161
                YFDS G+F+S ++S PLL   III+VN ++   +++   K  + R +A   + K
Sbjct:    86 KYQYFDSRGMFISLVFSAPLLVNTIIIVVNWVYRTLNVMTELKTLQQRIKAEKDKKK 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.140   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       163   0.00084  107 3  11 22  0.39    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  160 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  14.57u 0.07s 14.64t   Elapsed:  00:00:04
  Total cpu time:  14.57u 0.07s 14.64t   Elapsed:  00:00:05
  Start:  Fri May 10 17:01:13 2013   End:  Fri May 10 17:01:18 2013

GO:0003677 "DNA binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0031965 "nuclear membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__3542__AT1G34350.1 annotation not avaliable (163 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PF14770	123	TMEM18: Transmembrane protein 18	100.0
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	93.82
PF12357	74	PLD_C: Phospholipase D C terminal ; InterPro: IPR0	86.4
PRK10404	101	hypothetical protein; Provisional	85.95

>PF14770 TMEM18: Transmembrane protein 18

Probab=100.00  E-value=3.8e-60  Score=365.70  Aligned_cols=123  Identities=53%  Similarity=0.981  Sum_probs=121.2

Q ss_pred             hhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHhhhhHhHHHhchHhhhccccccCCCcc
Q 031229           35 DNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGI  114 (163)
Q Consensus        35 ~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk~~~~Q~~lFl~ll~~Vy~aE~iNe~aa~nW~~Fs~qnYFDs~G~  114 (163)
                      +++++|+++|||||||++||++||++++++++.|||++++|+++|++++++|||||+|||+||+||++||+||||||+|+
T Consensus         1 ~~~~~f~~aVdW~EPwl~~L~~fH~~~~~~~~~tr~~~~~q~~lf~~ll~~v~~aE~iN~~~a~nW~~Fs~qnYFDs~G~   80 (123)
T PF14770_consen    1 HSIWAFIHAVDWTEPWLIGLIAFHVLLLLLAILTRRRYNFQMILFLILLLLVYCAEYINEYAARNWRSFSKQNYFDSSGV   80 (123)
T ss_pred             CCHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229          115 FLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARI  157 (163)
Q Consensus       115 FISvv~S~PLLl~~~iilv~~l~~~~~lmv~~Kr~qlk~k~r~  157 (163)
                      |||+|||+|+|+||++|+++|+++++++||++||+|+|+|+||
T Consensus        81 Fisvv~s~PlLl~~~ii~~~~l~~~~~lmv~~Kr~qlr~~~rq  123 (123)
T PF14770_consen   81 FISVVFSAPLLLNCLIILVNWLYQLCSLMVQVKRAQLRRKARQ  123 (123)
T ss_pred             eehHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999986

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=93.82  E-value=0.53  Score=33.97  Aligned_cols=65  Identities=22%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHcc
Q 031229            2 EELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRK   70 (163)
Q Consensus         2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk   70 (163)
                      +++++.++++.|...+-+++...+.+.+.+...+..-.+++.    .||--..+++=+-+++..+++||
T Consensus        30 ~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e----~P~~svgiAagvG~llG~Ll~RR   94 (94)
T PF05957_consen   30 DEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE----NPWQSVGIAAGVGFLLGLLLRRR   94 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ChHHHHHHHHHHHHHHHHHHhCC
Confidence            678889999999999999999999999999999999999885    68888888988888888888876

>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group

Probab=86.40  E-value=0.57  Score=33.92  Aligned_cols=26  Identities=27%  Similarity=0.595  Sum_probs=22.0

Q ss_pred             hhhhHhHHHhchHhhhccccccCCCc
Q 031229           88 FAENLNRVLGSNWKRFATQNYFDSHG  113 (163)
Q Consensus        88 ~aE~iNe~aa~nW~~Fs~qnYFDs~G  113 (163)
                      |..++|+.|.+||+.|++..+=|=.|
T Consensus        13 CVr~Vn~iae~nW~~y~~ee~~dl~G   38 (74)
T PF12357_consen   13 CVRRVNEIAEENWKQYASEEVTDLPG   38 (74)
T ss_pred             HHHHHHHHHHHHHHHhhccccccCCC
Confidence            67899999999999999988755554

Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.

>PRK10404 hypothetical protein; Provisional

Probab=85.95  E-value=7.4  Score=29.24  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=49.0

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHcc
Q 031229            2 EELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRK   70 (163)
Q Consensus         2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk   70 (163)
                      +++|+..++.++...+-+.+...+...+.+...+..-.|+|.    .||=-.-++.=+-+++..+++||
T Consensus        37 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e----~Pw~avGiaagvGlllG~Ll~RR  101 (101)
T PRK10404         37 VELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE----KPWQGIGVGAAVGLVLGLLLARR  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHHHHHHhcC
Confidence            577888888888877777777777777777788888888887    67766666666777777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 33/99 (33%)

Query: 79  FLLALAGVYFAENLNRVLGSNWKRFAT-------------------QNYFDSHGIF---- 115
             L++      + L      NWK                       +  FD   +F    
Sbjct: 328 RRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 116 ------LSALWSGPLLFIAIIILVNTLFSLCSLIVRWKK 148
                 LS +W   ++   ++++VN L    SL+ +  K
Sbjct: 386 HIPTILLSLIWFD-VIKSDVMVVVNKLHKY-SLVEKQPK 422

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00