Citrus Sinensis ID: 031241

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAKCSHGCV
Secondary Structure (PSIPRED)
ccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEcccccEEcccccccEEEEEcccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHcHcccccEEEEcccccEEEEcccccccccccccEEEEEccccccccEEEEEccEEEccHHHcccHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MALQICLALSisshnslnhspmssspstlisFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNglypklskaslpeemelqrytdsnegftllrpsswikvdkAGATVLFEEankgtnnlgvvvnpvrvaslgefgtpqfVADKLIQAEKRKVTAKCSHGCV
Flexible Loop (DISEMBL)
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELsslrlskreLCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEeankgtnnlgvVVNPVRVASLGEFGTPQFVADKLIQAEKrkvtakcshgcv
Low Complexity Region (SEG)
MALQICLAlsisshnslnhspmssspstlisfsVQTKKKTVVelsslrlskrelclssFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAKCSHGCV
Disordered region (IsUnstruct)
****ICLA*****************************KKTVVELSSLRLSKRELCLSSFVLILNGLYPKLS************Y***NEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQA**************
Disordered Region (DISOPRED)
*****************************************************LCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQ***************
Disordered Region (DISEMBL)
MALQICLALSISSHNS*************ISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEK************
Disordered Region (DISPRO)
**LQICLALSISSHNS***SP**S**STLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKR***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAKCSHGCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q8VY52	232	PsbP domain-containing pr	yes	no	0.668	0.469	0.616	4e-31

>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 PE=1 SV=1

 Score =  134 bits (336), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 80/112 (71%), Gaps = 3/112 (2%)

Query: 46  SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
           S+ LSKR L LS   L  NG        S+ E   LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43  SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99

Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
           GA  LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRK + K
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTK 151

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
255587317	244	conserved hypothetical protein [Ricinus	0.932	0.622	0.568	3e-36
224093568	204	predicted protein [Populus trichocarpa]	0.656	0.524	0.694	1e-35
297822573	240	hypothetical protein ARALYDRAFT_481771 [	0.674	0.458	0.646	5e-31
449459216	357	PREDICTED: psbP domain-containing protei	0.760	0.347	0.629	3e-30
357464759	237	PsbP domain-containing protein [Medicago	0.926	0.637	0.496	4e-30
30683953	232	PsbP domain-containing protein 2 [Arabid	0.668	0.469	0.616	2e-29
356508949	241	PREDICTED: psbP domain-containing protei	0.668	0.452	0.636	1e-28
356516389	251	PREDICTED: psbP domain-containing protei	0.460	0.298	0.773	4e-28
242073138	247	hypothetical protein SORBIDRAFT_06g01709	0.515	0.340	0.654	5e-27
357163596	244	PREDICTED: psbP domain-containing protei	0.503	0.336	0.634	7e-27

>gi|255587317|ref|XP_002534226.1| conserved hypothetical protein [Ricinus communis] gi|223525676|gb|EEF28158.1| conserved hypothetical protein [Ricinus communis]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/167 (56%), Positives = 115/167 (68%), Gaps = 15/167 (8%)

Query: 1   MALQICLALSISSHNSLNHSP--MSSSPSTLIS------FSVQTKKKTVVELSSLRLSKR 52
           MALQ C ALS       N+ P  +SS P TL+        S   +K+ V+   S   SKR
Sbjct: 1   MALQACFALSCQGPYVQNNGPKSVSSLPRTLLHSISLPRASCPNRKEAVI--LSFCWSKR 58

Query: 53  ELCLSSFVLILNG-LYPKLSKASLPEEM-ELQRYTDSNEGFTLLRPSSWIKVDKAGATVL 110
           +L L+   L +NG L   +    L  EM EL+RYTD+ EGFTLLRPS+++KVDKAGATVL
Sbjct: 59  KLILA---LSINGSLLNIIPDTILAIEMGELERYTDAKEGFTLLRPSTYVKVDKAGATVL 115

Query: 111 FEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
           FEE NKG+NN+GVVVNPVR+A+LGEFGTPQFVADKLIQAEKRK + K
Sbjct: 116 FEEVNKGSNNIGVVVNPVRLATLGEFGTPQFVADKLIQAEKRKESTK 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093568|ref|XP_002309937.1| predicted protein [Populus trichocarpa] gi|222852840|gb|EEE90387.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 89/108 (82%), Gaps = 1/108 (0%)

Query: 51  KRELCLSSFVLILNGLYPKLSKAS-LPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATV 109
           +R+L LS   L++NG  P LS  S L +E+EL RYTDS EGFTLL PSS++KVDKAGATV
Sbjct: 15  RRKLNLSVLALLINGSLPNLSNNSILAQELELARYTDSKEGFTLLTPSSYVKVDKAGATV 74

Query: 110 LFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
           LFEE NKG+NN+GVVV PVR+ASL EFG+PQFVADKLIQAEK+K + K
Sbjct: 75  LFEEVNKGSNNIGVVVTPVRLASLDEFGSPQFVADKLIQAEKKKESTK 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822573|ref|XP_002879169.1| hypothetical protein ARALYDRAFT_481771 [Arabidopsis lyrata subsp. lyrata] gi|297325008|gb|EFH55428.1| hypothetical protein ARALYDRAFT_481771 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 83/113 (73%), Gaps = 3/113 (2%)

Query: 45  SSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDK 104
           + + LSKR L LS   L  NG +  L KA   EE  LQRYTDSN GFTLL PSS+ KVDK
Sbjct: 50  TEISLSKRHLNLSILTLFFNGFF-LLDKAKSIEE--LQRYTDSNNGFTLLIPSSYTKVDK 106

Query: 105 AGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
           AGA  LFEE N G+NN+GVVV+PVR+ SL +FGTPQFVADKLI AEKRK + K
Sbjct: 107 AGANALFEEPNNGSNNIGVVVSPVRIKSLDQFGTPQFVADKLINAEKRKESTK 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459216|ref|XP_004147342.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Cucumis sativus] gi|449523543|ref|XP_004168783.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Cucumis sativus]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 92/124 (74%)

Query: 34  VQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTL 93
             T K+ +    +L  S+R + +S   L   G    +S A   E+ EL+RYTDS EGFTL
Sbjct: 152 THTGKQPLEHKFALVTSRRAMNVSILSLFFYGFSTSISSAVFAEDFELERYTDSKEGFTL 211

Query: 94  LRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           LRPSSW+KVDKAGATVLFEE NKG+NN+GVVVNPVR+ SLGEFGTPQFVADKLIQAEKRK
Sbjct: 212 LRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 271

Query: 154 VTAK 157
            + K
Sbjct: 272 ESTK 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464759|ref|XP_003602661.1| PsbP domain-containing protein [Medicago truncatula] gi|358348394|ref|XP_003638232.1| PsbP domain-containing protein [Medicago truncatula] gi|355491709|gb|AES72912.1| PsbP domain-containing protein [Medicago truncatula] gi|355504167|gb|AES85370.1| PsbP domain-containing protein [Medicago truncatula]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 109/163 (66%), Gaps = 12/163 (7%)

Query: 1   MALQICLALSISSHNSLNHSPM--SSSPSTLISFSVQTKKKTVVELSSLRL---SKRELC 55
           MAL+   + S  SHN+L H  +  SSS  TLI    ++   + +  S  ++    KR+L 
Sbjct: 1   MALK---SFSTLSHNTLFHKLIHASSSSPTLIP---KSTSPSCIHDSHKQMPCFGKRKLN 54

Query: 56  LSSFVL-ILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEA 114
           L+  +   L  ++P +  ++     ELQRYTDSNEGFTL  PSSW KVDKAGAT LF++ 
Sbjct: 55  LTLLLTPFLWSVFPNVLLSAQELITELQRYTDSNEGFTLQIPSSWTKVDKAGATALFQDP 114

Query: 115 NKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
           NKG+NN+GVVVNPVR+ +LG+FGTPQFV DKL+QAE+RK + K
Sbjct: 115 NKGSNNIGVVVNPVRLTALGDFGTPQFVVDKLLQAERRKESTK 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683953|ref|NP_850123.1| PsbP domain-containing protein 2 [Arabidopsis thaliana] gi|75161418|sp|Q8VY52.1|PPD2_ARATH RecName: Full=PsbP domain-containing protein 2, chloroplastic; AltName: Full=PsbP-related thylakoid lumenal protein 3; Flags: Precursor gi|18253015|gb|AAL62434.1| unknown protein [Arabidopsis thaliana] gi|22136412|gb|AAM91284.1| unknown protein [Arabidopsis thaliana] gi|330253054|gb|AEC08148.1| PsbP domain-containing protein 2 [Arabidopsis thaliana]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 80/112 (71%), Gaps = 3/112 (2%)

Query: 46  SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
           S+ LSKR L LS   L  NG        S+ E   LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43  SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99

Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
           GA  LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRK + K
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTK 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508949|ref|XP_003523215.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Glycine max]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 86/110 (78%), Gaps = 1/110 (0%)

Query: 49  LSKRELCLSSFVLILNGLYPKL-SKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGA 107
            SKR + L++F+     L P       L +E+ELQRYTDS+EGFTLL PSSW KVDKAGA
Sbjct: 52  FSKRSILLTTFLWGQGMLLPNARDALLLAQELELQRYTDSDEGFTLLTPSSWTKVDKAGA 111

Query: 108 TVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
           TVLF+EA+ G+NN+GVVVNPVR+ +L EFGTPQFVADKL+QAE+RK + K
Sbjct: 112 TVLFQEADMGSNNIGVVVNPVRLKTLEEFGTPQFVADKLLQAERRKESTK 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516389|ref|XP_003526877.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Glycine max]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query: 83  RYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFV 142
           RYTDS EGFTLL PSSW KVDKAGATVLF+EA+ G+NN+GVVVNPVR+ +L EFGTPQFV
Sbjct: 97  RYTDSEEGFTLLTPSSWTKVDKAGATVLFQEADMGSNNIGVVVNPVRLKTLEEFGTPQFV 156

Query: 143 ADKLIQAEKRKVTAK 157
           ADKL+QAE+RK + K
Sbjct: 157 ADKLLQAERRKESTK 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242073138|ref|XP_002446505.1| hypothetical protein SORBIDRAFT_06g017090 [Sorghum bicolor] gi|241937688|gb|EES10833.1| hypothetical protein SORBIDRAFT_06g017090 [Sorghum bicolor]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 71/84 (84%)

Query: 77  EEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
           E +EL+RYTD  +GFTLL+P+SW KV+KAGAT LF++  KG+NN+GVVVNPVR+ SL EF
Sbjct: 88  EGIELERYTDQEQGFTLLKPTSWPKVEKAGATALFQQEGKGSNNIGVVVNPVRLNSLTEF 147

Query: 137 GTPQFVADKLIQAEKRKVTAKCSH 160
           GTPQFVAD+L+QAEK+K + K + 
Sbjct: 148 GTPQFVADRLLQAEKKKESTKTAE 171

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357163596|ref|XP_003579784.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Brachypodium distachyon]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 73/82 (89%)

Query: 79  MELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGT 138
           +EL+RYTD ++GFTLL+P+SW+KV+KAGAT LF++  KG+NN+GVVVNPVR++SL +FGT
Sbjct: 87  LELERYTDQDQGFTLLKPASWLKVEKAGATALFQQDGKGSNNIGVVVNPVRLSSLKDFGT 146

Query: 139 PQFVADKLIQAEKRKVTAKCSH 160
           P+FVAD+L+QAEK+K + K + 
Sbjct: 147 PEFVADRLLQAEKKKESTKSAE 168

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2828415	232	AT2G28605 [Arabidopsis thalian	0.576	0.405	0.649	4e-26
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.527	0.299	0.284	0.00049

TAIR|locus:2828415 AT2G28605 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 63/97 (64%), Positives = 73/97 (75%)

Query:    61 LILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNN 120
             L  NG     +KA   EE  LQRYTDSN GFTLL PSS+ KV+KAGA  LFEE N G+NN
Sbjct:    58 LFFNGFLLD-NKAKSMEE--LQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNN 114

Query:   121 LGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
             +GVVV+PVR+ SL +FG+PQFVADKLI AEKRK + K
Sbjct:   115 IGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTK 151

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00049, P = 0.00049
 Identities = 27/95 (28%), Positives = 50/95 (52%)

Query:    61 LILNGLYPKLSKASLPEEME----LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANK 116
             L+++GL   +S+A+LP         + Y D+ +G++   P +WI+V  AGA + F +   
Sbjct:    87 LLMSGLI--VSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVV 144

Query:   117 GTNNLGVVVN-PV--RVASLGEFGTPQFVADKLIQ 148
                NL V  + P      SL + G+P+ V  ++++
Sbjct:   145 LDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLR 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       122   0.00091  102 3  11 22  0.37    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  122 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.02u 0.11s 11.13t   Elapsed:  00:00:00
  Total cpu time:  11.02u 0.11s 11.13t   Elapsed:  00:00:00
  Start:  Mon May 20 20:56:17 2013   End:  Mon May 20 20:56:17 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
pfam01789	163	pfam01789, PsbP, PsbP	8e-10
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	7e-04

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 81  LQRYTDSNEGFTLLRPSSW-IKVDKAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
            Q Y D+++G+  L P+ W  +V   G  V+F +  +   N+ VV++PV +  SL + G+
Sbjct: 10  FQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDKKKSLEDLGS 69

Query: 139 PQFVADKLIQAEKRKVTA 156
           P+ V ++L+    R V A
Sbjct: 70  PEEVGERLL----RGVLA 83

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 16/137 (11%)

Query: 19  HSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEE 78
            S  S+ P + ++ +  T  K V  +   +     L +S  ++         S+A+LP  
Sbjct: 52  QSAKSAKPDSPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIV---------SEANLPTA 102

Query: 79  ME----LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVV---NPVRVA 131
                  + Y D+ +G++   P +WI+V  AGA + F +      NL V     +  +  
Sbjct: 103 FASIPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYT 162

Query: 132 SLGEFGTPQFVADKLIQ 148
           SL + G+P+ V  ++++
Sbjct: 163 SLEDLGSPEEVGKRVLR 179

Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.96
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	99.95
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.86
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.73
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.67
PLN03152	241	hypothetical protein; Provisional	98.99
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	89.97

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.96  E-value=8.5e-30  Score=218.15  Aligned_cols=115  Identities=18%  Similarity=0.297  Sum_probs=92.9

Q ss_pred             cchhhHHHhhhcchhhHHHHH--HHHHHHhhhCCCCCCCCcccccCceeeecCCCceEEecCCCCccccccCCcEEeecC
Q 031241           37 KKKTVVELSSLRLSKRELCLS--SFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEA  114 (163)
Q Consensus        37 ~~~~~~~~~~~~~~RR~lll~--v~~~~~t~~ll~~s~~alA~~~gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~  114 (163)
                      .+.|..+....+...||.++.  +++..+..+ ....+.++|+..||++|+|+.|||+|+||.||++|++.|+||+|||+
T Consensus        64 ~~~~~~~~~~~~~~~rr~~~~~~l~~~~~~~s-~~~~~~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~  142 (286)
T PLN00059         64 AINCLTDAKQVCAVGRRKSMMMGLLMSGLIVS-EANLPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP  142 (286)
T ss_pred             eeecccchhhhhhhhhhhhhHHHHHHHHHHHH-hhcCchhhcCCcccceeEcCCCCeEEeCCCCCeEeccCCCceEEecc
Confidence            345544555556666666643  333333333 33344578888899999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEeeCC---CCCcccCCCHHHHHHHHHHHHHh
Q 031241          115 NKGTNNLGVVVNPVR---VASLGEFGTPQFVADKLIQAEKR  152 (163)
Q Consensus       115 ~~~~eNVsV~VsPv~---~~sI~dfGsPeeVge~L~k~e~~  152 (163)
                      ++.+|||||+|+|++   +++|+|||+|+||||+|++++.+
T Consensus       143 Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa  183 (286)
T PLN00059        143 VVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLT  183 (286)
T ss_pred             CccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhc
Confidence            999999999999885   89999999999999999999976

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=99.95  E-value=1.6e-27  Score=203.19  Aligned_cols=150  Identities=23%  Similarity=0.291  Sum_probs=97.3

Q ss_pred             ChhhhhhhhcccCCCcCCCCCCCCCCCccccccccCcchh-hHHHhhhcchhhHHHHHHHHHHHhhhCCCCCCCCcccc-
Q 031241            1 MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKT-VVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEE-   78 (163)
Q Consensus         1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~RR~lll~v~~~~~t~~ll~~s~~alA~~-   78 (163)
                      ||..+|+.--....-.-.+...++++.......-|..+.| .+.+.....+||++|+.++..++.+.-++.++.+++++ 
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~a   80 (260)
T PLN00042          1 MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQEEDNSAVSRRAALALLAGAAAAGAKVSPANAAYGESA   80 (260)
T ss_pred             CcchhhhhhcccccchhhhcccccccccccCCCCCcceeeeccccccccccHHHHHHHHHHHHHhhcccCchhhhhcchh
Confidence            8888887533221111111111112222233344555566 22333455677776654432222222232222344332 


Q ss_pred             ---------cCceeeecCCCceEEecCCCCcccc---ccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHH----H
Q 031241           79 ---------MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQF----V  142 (163)
Q Consensus        79 ---------~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~sI~dfGsPee----V  142 (163)
                               .||.+|.  +|||+|+||++|++++   .+|+|++|||+++++|||+|+|+|+++++|+|||+|||    |
T Consensus        81 nvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~v  158 (260)
T PLN00042         81 NVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKV  158 (260)
T ss_pred             hccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHHHHH
Confidence                     6999996  5999999999999776   56999999999999999999999999999999999999    8


Q ss_pred             HHHHHHHHHh
Q 031241          143 ADKLIQAEKR  152 (163)
Q Consensus       143 ge~L~k~e~~  152 (163)
                      +++|.++.-.
T Consensus       159 gylL~kq~~a  168 (260)
T PLN00042        159 SYLLGKQAYS  168 (260)
T ss_pred             HHHHHhhhcc
Confidence            8888886543

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.86  E-value=3e-22  Score=159.25  Aligned_cols=78  Identities=38%  Similarity=0.694  Sum_probs=70.9

Q ss_pred             ccCceeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEeeCCCC-CcccCCCHHHHHHHHHHHHHhhcC
Q 031241           78 EMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVA-SLGEFGTPQFVADKLIQAEKRKVT  155 (163)
Q Consensus        78 ~~gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsPv~~~-sI~dfGsPeeVge~L~k~e~~Kes  155 (163)
                      ..||++|.|+.+||+|.||.||+++++.|+|++|+|+++.++||+|+|+|+..+ +|+|||+|+|||++|++++.+++.
T Consensus        20 ~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~~~~~~~~~   98 (175)
T PF01789_consen   20 STGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLLNGELASPG   98 (175)
T ss_dssp             -SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHHHHCCCHCT
T ss_pred             CCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHhhhhccccc
Confidence            379999999999999999999999999999999999999999999999999855 999999999999999998876654

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.73  E-value=1.2e-17  Score=142.80  Aligned_cols=102  Identities=21%  Similarity=0.337  Sum_probs=76.2

Q ss_pred             hcchhhHHHHHHHHHHHhhhCCCCCCCCcccc-------------cCceeee-----------cCCCceEEecCCCCccc
Q 031241           47 LRLSKRELCLSSFVLILNGLYPKLSKASLPEE-------------MELQRYT-----------DSNEGFTLLRPSSWIKV  102 (163)
Q Consensus        47 ~~~~RR~lll~v~~~~~t~~ll~~s~~alA~~-------------~gf~~y~-----------D~~dGYsflyP~gW~~v  102 (163)
                      ....||++|+|+.+..+... +... .+.|.|             .||--|.           +...||+|+||.||+++
T Consensus        41 ~~~~rr~~~~~~~~~~~~~~-~~~~-~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v  118 (263)
T PLN00067         41 VVIHRRELLLGLALAPLILI-APEP-PAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQT  118 (263)
T ss_pred             chhHHHHHHhhhhhhhhhhc-cCCc-hhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCc
Confidence            44689999999876533322 2211 222221             3666664           23679999999999999


Q ss_pred             ccc----C-----------CcEEeecCCCCCceeEEEEeeC------CCCCcccCCCHHHHHHHHHHHHHh
Q 031241          103 DKA----G-----------ATVLFEEANKGTNNLGVVVNPV------RVASLGEFGTPQFVADKLIQAEKR  152 (163)
Q Consensus       103 ~~~----G-----------~dv~F~D~~~~~eNVsV~VsPv------~~~sI~dfGsPeeVge~L~k~e~~  152 (163)
                      +++    |           +|++|+|+.  ++||+|+|+|+      ++++|+|||+|++|+++|.+....
T Consensus       119 ~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g  187 (263)
T PLN00067        119 RVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTG  187 (263)
T ss_pred             cccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhc
Confidence            986    4           899999955  77999999998      468999999999999999877654

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.67  E-value=3.1e-16  Score=134.43  Aligned_cols=101  Identities=22%  Similarity=0.312  Sum_probs=78.1

Q ss_pred             chhhHHHHHHHHHHHhhhCCCCCCCCcc----------------cccCceeeecC-------------CCceEEecCCCC
Q 031241           49 LSKRELCLSSFVLILNGLYPKLSKASLP----------------EEMELQRYTDS-------------NEGFTLLRPSSW   99 (163)
Q Consensus        49 ~~RR~lll~v~~~~~t~~ll~~s~~alA----------------~~~gf~~y~D~-------------~dGYsflyP~gW   99 (163)
                      ++||.+|.+.++++.... ++.+..++|                .+.||+.|..+             ...|+|+||.||
T Consensus        45 ~~rr~~~~s~~~~~~~~~-~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW  123 (262)
T PLN00066         45 VSRRSALASGAAAASSAV-LAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGW  123 (262)
T ss_pred             hhHHHHHHHHHHHHhhhh-hcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCCC
Confidence            589999987765522211 222222322                23588999765             267999999999


Q ss_pred             cccccc-----CCcEEeecCCCCCceeEEEEeeC--------CCCCcccCCCHHHHHHHHHHHH
Q 031241          100 IKVDKA-----GATVLFEEANKGTNNLGVVVNPV--------RVASLGEFGTPQFVADKLIQAE  150 (163)
Q Consensus       100 ~~v~~~-----G~dv~F~D~~~~~eNVsV~VsPv--------~~~sI~dfGsPeeVge~L~k~e  150 (163)
                      .++.++     |+++.|++.++.++||+|+|+|+        ++++|+|||+||+|++.|+++.
T Consensus       124 ~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v  187 (262)
T PLN00066        124 EEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPEL  187 (262)
T ss_pred             eEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHh
Confidence            999986     77788888889999999999998        5899999999999999998763

>PLN03152 hypothetical protein; Provisional

Probab=98.99  E-value=1.1e-09  Score=92.77  Aligned_cols=72  Identities=17%  Similarity=0.380  Sum_probs=54.8

Q ss_pred             cccccCceeeecCCCceEEecCCCCcccccc-----------------CCcEEeecCCCCCceeEEEEeeC--------C
Q 031241           75 LPEEMELQRYTDSNEGFTLLRPSSWIKVDKA-----------------GATVLFEEANKGTNNLGVVVNPV--------R  129 (163)
Q Consensus        75 lA~~~gf~~y~D~~dGYsflyP~gW~~v~~~-----------------G~dv~F~D~~~~~eNVsV~VsPv--------~  129 (163)
                      +|++..+-.|  .++||++-||.++..+-++                 --.++|..+ |.+|||||+|+|+        +
T Consensus        72 ~~nt~~w~~~--~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle  148 (241)
T PLN03152         72 IANTKSWFQF--YGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLE  148 (241)
T ss_pred             eecchhhhhh--hCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccc
Confidence            3444444444  3899999999999876532                 234556555 4899999999997        5


Q ss_pred             CCCcccCCCHHHHHHHHHHH
Q 031241          130 VASLGEFGTPQFVADKLIQA  149 (163)
Q Consensus       130 ~~sI~dfGsPeeVge~L~k~  149 (163)
                      .++|+|||+|+|||+.|+-.
T Consensus       149 ~kDLtDLGsp~EVgkv~vP~  168 (241)
T PLN03152        149 AKDITDLGSLKEAAKIFVPG  168 (241)
T ss_pred             cCChhHcCCHHHHHHhhCCC
Confidence            89999999999999888744

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=89.97  E-value=0.37  Score=38.90  Aligned_cols=45  Identities=16%  Similarity=0.426  Sum_probs=28.0

Q ss_pred             eeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEe
Q 031241           82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVN  126 (163)
Q Consensus        82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~Vs  126 (163)
                      .-|..++.=|++.||.+|.++.......+|=||..=+-|..+..-
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISay   46 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAY   46 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEE
T ss_pred             CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEE
Confidence            467888888999999999999977778889999999999965443

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		5e-07
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		1e-04

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 81  LQRYTDSNEGFTLLRPSSWIKVD-KAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
           LQ Y DS +G+  L P  W++V  +    V+F +  + T N+ VVVN V    SL E G+
Sbjct: 8   LQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGS 67
Query: 139 PQFVADKLIQAEKRKVTAKCSHG 161
           P+ V D+L+    R + A    G
Sbjct: 68  PEEVGDRLL----RNIIAPSESG 86

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 81  LQRYTDSNEGFTLLRPSSWIKVDKAGAT----VLFEEANKGTNNLGVVVNPV-RVASLGE 135
           LQRY+D+ +G+  L P+ WI VD  GA+    V+F +  +   NL V+++ +    +L +
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTD 73
Query: 136 FGTPQFVADKLIQ 148
            GT   V  + ++
Sbjct: 74  LGTATDVGYRFMK 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	5e-12
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	1e-10
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	1e-10
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	1e-10

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 81  LQRYTDSNEGFTLLRPSSWIKVD-KAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
           LQ Y DS +G+  L P  W++V  +    V+F +  + T N+ VVVN V    SL E G+
Sbjct: 8   LQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGS 67

Query: 139 PQFVADKLIQA 149
           P+ V D+L++ 
Sbjct: 68  PEEVGDRLLRN 78

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 70  LSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGAT----VLFEEANKGTNNLGVVV 125
           L          LQRY+D+ +G+  L P+ WI VD  GA+    V+F +  +   NL V++
Sbjct: 3   LGSCGGVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVII 62

Query: 126 NPV-RVASLGEFGTPQFVADKLIQA 149
           + +    +L + GT   V  + ++ 
Sbjct: 63  SEIPSDKTLTDLGTATDVGYRFMKT 87

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 80  ELQRYTDSNEGFTLLRPSSWI---KVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
           + Q Y    +GF L  PS W    +V+  G  + FE+    T+N+ V + P    S+ +F
Sbjct: 8   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 65

Query: 137 GTPQFVADKLIQAEKRKVTA 156
           G+P+    ++     R+  +
Sbjct: 66  GSPEQFLSQVDYLLGRQAYS 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.72
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.8
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.77
3hlz_A	269	Uncharacterized protein BT_1490; NP_810393.1, stru	85.75

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.72  E-value=3.9e-22  Score=157.00  Aligned_cols=75  Identities=29%  Similarity=0.605  Sum_probs=70.8

Q ss_pred             ccCceeeecCCCceEEecCCCCcccccc----CCcEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHHHh
Q 031241           78 EMELQRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAEKR  152 (163)
Q Consensus        78 ~~gf~~y~D~~dGYsflyP~gW~~v~~~----G~dv~F~D~~~~~eNVsV~VsPv~~-~sI~dfGsPeeVge~L~k~e~~  152 (163)
                      ..||++|+|+.|||+|+||++|++++++    |+|++|+|+++.++||+|+|+|+++ ++|+|||+|+|||++|++++.+
T Consensus        11 ~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~~~   90 (170)
T 2lnj_A           11 IASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVND   90 (170)
Confidence            4699999999999999999999999988    9999999999999999999999996 9999999999999999998554

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.80  E-value=5e-20  Score=143.27  Aligned_cols=75  Identities=36%  Similarity=0.616  Sum_probs=70.3

Q ss_pred             ccCceeeecCCCceEEecCCCCcccccc-CCcEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHHHh
Q 031241           78 EMELQRYTDSNEGFTLLRPSSWIKVDKA-GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAEKR  152 (163)
Q Consensus        78 ~~gf~~y~D~~dGYsflyP~gW~~v~~~-G~dv~F~D~~~~~eNVsV~VsPv~~-~sI~dfGsPeeVge~L~k~e~~  152 (163)
                      ..||++|.|+.+||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+|++||++|+++..+
T Consensus         5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~   81 (165)
T 2xb3_A            5 TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIA   81 (165)
T ss_dssp             -CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTS
T ss_pred             CCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhc
Confidence            3699999999999999999999999998 9999999999999999999999985 9999999999999999997654

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.77  E-value=6.9e-20  Score=146.53  Aligned_cols=72  Identities=29%  Similarity=0.499  Sum_probs=61.8

Q ss_pred             cCceeeecCCCceEEecCCCCcccc---ccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHH----HHHHHHHHHH
Q 031241           79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQF----VADKLIQAEK  151 (163)
Q Consensus        79 ~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~sI~dfGsPee----Vge~L~k~e~  151 (163)
                      .||++|.  +|||+|+||.+|++++   .+|+|++|+|+++.++||+|+|+|+++++|+|||+|++    ||++|+++..
T Consensus         7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~~~   84 (177)
T 1v2b_A            7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY   84 (177)
T ss_dssp             CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred             CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHHhh
Confidence            6999997  8999999999999766   45999999999999999999999999999999999999    6888887755


Q ss_pred             h
Q 031241          152 R  152 (163)
Q Consensus       152 ~  152 (163)
                      .
T Consensus        85 ~   85 (177)
T 1v2b_A           85 S   85 (177)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}

Probab=85.75  E-value=0.85  Score=38.56  Aligned_cols=46  Identities=17%  Similarity=0.383  Sum_probs=39.0

Q ss_pred             eeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEee
Q 031241           82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNP  127 (163)
Q Consensus        82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsP  127 (163)
                      .-|..++.=|++.||.+|+++.....--+|-+|..=+-|..+.--.
T Consensus         5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk   50 (269)
T 3hlz_A            5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK   50 (269)
T ss_dssp             EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE
T ss_pred             ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc
Confidence            4688889999999999999999887888888999999998655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	7e-11

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 55.5 bits (133), Expect = 7e-11
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 80  ELQRYTDSNEGFTLLRPSSWI---KVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
           + Q Y    +GF L  PS W    +V+  G  + FE+    T+N+ V + P    S+ +F
Sbjct: 2   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 59

Query: 137 GTPQFVADKL 146
           G+P+    ++
Sbjct: 60  GSPEQFLSQV 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.74

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.74  E-value=5.3e-19  Score=137.14  Aligned_cols=66  Identities=29%  Similarity=0.573  Sum_probs=59.8

Q ss_pred             cCceeeecCCCceEEecCCCCcccc---ccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHHHHHHH
Q 031241           79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKL  146 (163)
Q Consensus        79 ~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~sI~dfGsPeeVge~L  146 (163)
                      ++|++|.|  |||+|+||++|+++.   ..|+|++|+|+++.++||+|+|+|+++++|++||+|+++++++
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v   69 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQV   69 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHT
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHH
Confidence            37999986  899999999998765   4489999999999999999999999999999999999977665