Citrus Sinensis ID: 031249

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Secondary Structure (PSIPRED)
cccccHHHccccccccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDArqhanpnmsIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAldavndqsgikvgygrgqgpsgardgtvsqrggccs
Flexible Loop (DISEMBL)
MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGrgqgpsgardgtvsqrggccs
Low Complexity Region (SEG)
MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Disordered region (IsUnstruct)
******SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR***********KENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND**GIKV************************
Disordered Region (DISOPRED)
*FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ************************************RGGCCS
Disordered Region (DISEMBL)
MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR*********FAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYG*********************
Disordered Region (DISPRO)
*FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q38922	211	Ras-related protein RABB1	yes	no	0.907	0.701	0.864	6e-73
P92963	211	Ras-related protein RABB1	no	no	0.907	0.701	0.810	2e-67
P36863	213	GTP-binding protein yptV4	N/A	no	0.907	0.694	0.735	2e-60
Q39570	213	GTP-binding protein YPTC4	N/A	no	0.907	0.694	0.728	6e-60
P49104	210	Ras-related protein Rab-2	N/A	no	0.785	0.609	0.812	1e-57
P49103	209	Ras-related protein Rab-2	N/A	no	0.779	0.607	0.818	1e-57
O23561	205	Ras-related protein RABB1	no	no	0.865	0.687	0.651	2e-51
P36409	207	Ras-related protein Rab-2	yes	no	0.877	0.690	0.64	2e-50
P53994	212	Ras-related protein Rab-2	yes	no	0.907	0.698	0.653	3e-50
Q01971	212	Ras-related protein Rab-2	yes	no	0.797	0.613	0.715	4e-50

>sp|Q38922|RAB1B_ARATH Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1

 Score =  272 bits (696), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 128/148 (86%), Positives = 139/148 (93%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N+ 
Sbjct: 123 LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
           SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct: 183 SGIKIGYGRTQGAAGGRDGTISQGGGCC 210

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|P92963|RAB1C_ARATH Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1

 Score =  254 bits (649), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 131/148 (88%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAA I + IQ+G  D  N+ 
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
            GIKVGYG   GPSG RDG+ SQ GGCC
Sbjct: 183 YGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1

 Score =  231 bits (589), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 124/151 (82%), Gaps = 3/151 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEEAFI TA +I + IQ+G  D  N+ 
Sbjct: 123 LTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNES 182

Query: 135 SGIKVGYGRGQ-GPSGAR--DGTVSQRGGCC 162
            GIKVGYG G  GP  A+  +G   +   CC
Sbjct: 183 YGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1

 Score =  229 bits (584), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 124/151 (82%), Gaps = 3/151 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEEAFI TA +I + IQ+G  D  N+ 
Sbjct: 123 LTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNES 182

Query: 135 SGIKVGYGRGQ-GPSGAR--DGTVSQRGGCC 162
            GIKVGYG G  GP   +  +G  ++   CC
Sbjct: 183 YGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1

 Score =  221 bits (564), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/128 (81%), Positives = 115/128 (89%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IMLVGNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAF+KTA  I + IQ+G  D  N+ 
Sbjct: 123 LSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNES 182

Query: 135 SGIKVGYG 142
            GIKVGY 
Sbjct: 183 YGIKVGYA 190

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1

 Score =  221 bits (564), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/127 (81%), Positives = 115/127 (90%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IMLVGNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAF+KTA  I + IQ+G  D  N+ 
Sbjct: 123 LSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNES 182

Query: 135 SGIKVGY 141
            GIKVGY
Sbjct: 183 YGIKVGY 189

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|O23561|RAB1A_ARATH Ras-related protein RABB1a OS=Arabidopsis thaliana GN=RABB1A PE=2 SV=1

 Score =  201 bits (511), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 8/149 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRS+TRSYYRG AG LLVYDITRRETFNHL+SWLE+ARQHA+ NM+ ML+GNKCD
Sbjct: 63  AGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  +R VS EEGEQFA+E+GL+F+EASA+TA NVEEAF++TAA I + IQ+G +D  N+ 
Sbjct: 123 LEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDGVVDEANEP 182

Query: 135 SGIKVGYGRGQGPSGARDGTVS-QRGGCC 162
                  G   GP G +D + S QR GCC
Sbjct: 183 -------GITPGPFGGKDASSSQQRRGCC 204

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36409|RAB2A_DICDI Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2

 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/150 (64%), Positives = 117/150 (78%), Gaps = 7/150 (4%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRG+AGALLVYDITRR+TFNHL+ WL+DAR +AN NM+I+L+GNK D
Sbjct: 62  AGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSD 121

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           +  +RAVS EEG QFA ENGL+FLE SA+TA NVEEAF+ TA+KI + IQ+G  D  N+ 
Sbjct: 122 MESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNES 181

Query: 135 SGIKVGYGRGQGPSGARDGTVSQR--GGCC 162
            GIK+G      P+  +DGT  +   GGCC
Sbjct: 182 FGIKLG-----APTSKQDGTDQKPAGGGCC 206

Dictyostelium discoideum (taxid: 44689)

>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1

 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 115/150 (76%), Gaps = 2/150 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query: 135 SGIKVG--YGRGQGPSGARDGTVSQRGGCC 162
           +GIK+G  +       G+  G     GGCC
Sbjct: 183 NGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1

 Score =  196 bits (499), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/130 (71%), Positives = 108/130 (83%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query: 135 SGIKVGYGRG 144
           +GIK+G   G
Sbjct: 183 NGIKIGPQHG 192

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
449455912	211	PREDICTED: ras-related protein RABB1b-li	0.907	0.701	0.932	2e-75
255570175	211	protein with unknown function [Ricinus c	0.914	0.706	0.899	1e-74
224102877	211	predicted protein [Populus trichocarpa]	0.914	0.706	0.912	3e-74
147818090	237	hypothetical protein VITISV_005966 [Viti	0.926	0.637	0.882	5e-74
225452278	209	PREDICTED: ras-related protein RABB1b [V	0.901	0.703	0.906	3e-73
297798332	211	GTP-binding 2 [Arabidopsis lyrata subsp.	0.907	0.701	0.885	2e-72
356570243	211	PREDICTED: ras-related protein RABB1b-li	0.914	0.706	0.879	4e-72
15233367	211	GTP-binding protein GB2 [Arabidopsis tha	0.907	0.701	0.864	3e-71
145334237	165	GTP-binding protein GB2 [Arabidopsis tha	0.907	0.896	0.864	3e-71
6624302	211	small GTP-binding protein [Carica papaya	0.907	0.701	0.871	7e-71

>gi|449455912|ref|XP_004145694.1| PREDICTED: ras-related protein RABB1b-like [Cucumis sativus] gi|449492910|ref|XP_004159138.1| PREDICTED: ras-related protein RABB1b-like [Cucumis sativus]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/148 (93%), Positives = 141/148 (95%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIMLVGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKAD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  D  N+ 
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
           SGIKVGYGR QGPSGARDGTV+QRGGCC
Sbjct: 183 SGIKVGYGRPQGPSGARDGTVAQRGGCC 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570175|ref|XP_002526048.1| protein with unknown function [Ricinus communis] gi|223534629|gb|EEF36325.1| protein with unknown function [Ricinus communis]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/149 (89%), Positives = 141/149 (94%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNIQEG  D  N+ 
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIQEGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCCS 163
           SGIKVGYGR QGPSG+RDG V+QRGGCCS
Sbjct: 183 SGIKVGYGRPQGPSGSRDGAVAQRGGCCS 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102877|ref|XP_002312839.1| predicted protein [Populus trichocarpa] gi|118481778|gb|ABK92828.1| unknown [Populus trichocarpa] gi|222849247|gb|EEE86794.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 136/149 (91%), Positives = 140/149 (93%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI TA KILQNIQEG  D  N+ 
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIGTAGKILQNIQEGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCCS 163
           SGIKVGYGR QG SGARDGTV+QRGGCCS
Sbjct: 183 SGIKVGYGRPQGASGARDGTVAQRGGCCS 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818090|emb|CAN73550.1| hypothetical protein VITISV_005966 [Vitis vinifera]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 135/153 (88%), Positives = 143/153 (93%), Gaps = 2/153 (1%)

Query: 11  SLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70
           + + AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+G
Sbjct: 87  NFIHAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIG 146

Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA+ILQNIQEG  D 
Sbjct: 147 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAARILQNIQEGVFDL 206

Query: 131 VNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 163
            N+ SGIKVGYGR QGPSG  DGTVSQRGGCC+
Sbjct: 207 SNESSGIKVGYGRPQGPSG--DGTVSQRGGCCN 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452278|ref|XP_002270701.1| PREDICTED: ras-related protein RABB1b [Vitis vinifera] gi|296087576|emb|CBI34832.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/149 (90%), Positives = 141/149 (94%), Gaps = 2/149 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA+ILQNIQEG  D  N+ 
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAARILQNIQEGVFDLSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCCS 163
           SGIKVGYGR QGPSG  DGTVSQRGGCC+
Sbjct: 183 SGIKVGYGRPQGPSG--DGTVSQRGGCCN 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798332|ref|XP_002867050.1| GTP-binding 2 [Arabidopsis lyrata subsp. lyrata] gi|297312886|gb|EFH43309.1| GTP-binding 2 [Arabidopsis lyrata subsp. lyrata]

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/148 (88%), Positives = 139/148 (93%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAH+RAVSKEEGEQFAKE+GLLFLEASARTAQNVEEAFIKTAAKILQNIQ+G  D  N+ 
Sbjct: 123 LAHKRAVSKEEGEQFAKEHGLLFLEASARTAQNVEEAFIKTAAKILQNIQDGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
           SGIKVGYGR QG +G RDGT+SQ GGCC
Sbjct: 183 SGIKVGYGRTQGAAGGRDGTISQGGGCC 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570243|ref|XP_003553299.1| PREDICTED: ras-related protein RABB1b-like [Glycine max]

 Score =  275 bits (703), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 131/149 (87%), Positives = 138/149 (92%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL+SWLEDARQHANPNM+IML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLASWLEDARQHANPNMTIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L+HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNIQEG  D  N+ 
Sbjct: 123 LSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIQEGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCCS 163
            GIKVGYGR QG  GARDGTVS RGGCCS
Sbjct: 183 FGIKVGYGRPQGQPGARDGTVSARGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233367|ref|NP_195311.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|75281787|sp|Q38922.1|RAB1B_ARATH RecName: Full=Ras-related protein RABB1b; Short=AtRABB1b; AltName: Full=Ras-related protein GB2; Short=AtGB2; AltName: Full=Ras-related protein Rab2C; Short=AtRab2C gi|1184983|gb|AAA87883.1| ATGB2 [Arabidopsis thaliana] gi|3805852|emb|CAA21472.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|7270538|emb|CAB81495.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|17529056|gb|AAL38738.1| putative GTP-binding protein GB2 [Arabidopsis thaliana] gi|21436445|gb|AAM51423.1| putative GTP-binding protein GB2 [Arabidopsis thaliana] gi|21553875|gb|AAM62968.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|332661181|gb|AEE86581.1| GTP-binding protein GB2 [Arabidopsis thaliana]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/148 (86%), Positives = 139/148 (93%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N+ 
Sbjct: 123 LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
           SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct: 183 SGIKIGYGRTQGAAGGRDGTISQGGGCC 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334237|ref|NP_001078499.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|332661182|gb|AEE86582.1| GTP-binding protein GB2 [Arabidopsis thaliana]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/148 (86%), Positives = 139/148 (93%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNKCD
Sbjct: 17  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 76

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N+ 
Sbjct: 77  LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSNES 136

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
           SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct: 137 SGIKIGYGRTQGAAGGRDGTISQGGGCC 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6624302|dbj|BAA88497.1| small GTP-binding protein [Carica papaya]

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 129/148 (87%), Positives = 138/148 (93%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKSD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L+HRRAVSKEEGEQFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQEG +D  N+ 
Sbjct: 123 LSHRRAVSKEEGEQFAKEHGLLFLEASARTAQNVEEAFIRTAAKILQNIQEGVIDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
           SGIK GYGR QG +GARDG V+QR GCC
Sbjct: 183 SGIKFGYGRPQGTAGARDGAVAQRSGCC 210

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2125384	211	GB2 "GTP-binding 2" [Arabidops	0.907	0.701	0.864	8.2e-67
TAIR|locus:2130624	211	RABB1C "AT4G17170" [Arabidopsi	0.907	0.701	0.810	2.1e-61
MGI|MGI:1928750	212	Rab2a "RAB2A, member RAS oncog	0.907	0.698	0.653	2.9e-48
UNIPROTKB|Q01971	212	RAB2A "Ras-related protein Rab	0.907	0.698	0.653	3.7e-48
RGD|68323	212	Rab2a "RAB2A, member RAS oncog	0.907	0.698	0.653	3.7e-48
ZFIN|ZDB-GENE-011212-2	212	rab2a "RAB2A, member RAS oncog	0.907	0.698	0.653	4.7e-48
FB|FBgn0014009	213	Rab2 "Rab2" [Drosophila melano	0.907	0.694	0.662	1.6e-47
UNIPROTKB|G1K288	232	RAB2A "Ras-related protein Rab	0.907	0.637	0.646	1.6e-47
UNIPROTKB|P61105	212	RAB2A "Ras-related protein Rab	0.907	0.698	0.646	1.6e-47
UNIPROTKB|P61019	212	RAB2A "Ras-related protein Rab	0.907	0.698	0.646	1.6e-47

TAIR|locus:2125384 GB2 "GTP-binding 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 128/148 (86%), Positives = 139/148 (93%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNKCD
Sbjct:    63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             LAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N+ 
Sbjct:   123 LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSNES 182

Query:   135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
             SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct:   183 SGIKIGYGRTQGAAGGRDGTISQGGGCC 210

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2130624 RABB1C "AT4G17170" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 120/148 (81%), Positives = 131/148 (88%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNKCD
Sbjct:    63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             LAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAA I + IQ+G  D  N+ 
Sbjct:   123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182

Query:   135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
              GIKVGYG   GPSG RDG+ SQ GGCC
Sbjct:   183 YGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

MGI|MGI:1928750 Rab2a "RAB2A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 98/150 (65%), Positives = 115/150 (76%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct:    63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct:   123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query:   135 SGIKVG--YGRGQGPSGARDGTVSQRGGCC 162
             +GIK+G  +       G+  G     GGCC
Sbjct:   183 NGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

UNIPROTKB|Q01971 RAB2A "Ras-related protein Rab-2A" [Oryctolagus cuniculus (taxid:9986)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 98/150 (65%), Positives = 114/150 (76%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct:    63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct:   123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query:   135 SGIKVG--YGRGQGPSGARDGTVSQRGGCC 162
             +GIK+G  +G          G     GGCC
Sbjct:   183 NGIKIGPQHGATNATHAGNQGGQQAGGGCC 212

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

RGD|68323 Rab2a "RAB2A, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 98/150 (65%), Positives = 114/150 (76%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct:    63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct:   123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query:   135 SGIKVG--YGRGQGPSGARDGTVSQRGGCC 162
             +GIK+G  +       G   G     GGCC
Sbjct:   183 NGIKIGPQHAATNASHGGNQGGQQAGGGCC 212

GO:0000139 "Golgi membrane" evidence=IDA

GO:0003924 "GTPase activity" evidence=IEA;ISO;ISS

GO:0005525 "GTP binding" evidence=IEA;ISO;ISS;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006184 "GTP catabolic process" evidence=ISO;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA;ISO;ISS

GO:0032482 "Rab protein signal transduction" evidence=IC

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

ZFIN|ZDB-GENE-011212-2 rab2a "RAB2A, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 98/150 (65%), Positives = 114/150 (76%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct:    63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct:   123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query:   135 SGIKVG--YGRGQGPSGARDGTVSQRGGCC 162
             +GIK+G  +       G   G     GGCC
Sbjct:   183 NGIKIGPQHAATNSTMGGSQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0014009 Rab2 "Rab2" [Drosophila melanogaster (taxid:7227)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 100/151 (66%), Positives = 115/151 (76%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQE+FRSITRSYYRGAAGALLVYDITRRETFNHL++WLEDARQH+N NM IML+GNK D
Sbjct:    63 AGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             L  RR V KEEGE FA+E+GL+F+E SARTA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct:   123 LDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query:   135 SGIKVGYGRGQ-GPS--GARDGTVSQRGGCC 162
             +GIK+G       PS  GA     +   GCC
Sbjct:   183 NGIKIGQQHSPTNPSLPGAGGAAGAANSGCC 213

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

UNIPROTKB|G1K288 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 97/150 (64%), Positives = 113/150 (75%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct:    83 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 142

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct:   143 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 202

Query:   135 SGIKVG--YGRGQGPSGARDGTVSQRGGCC 162
             +GIK+G  +           G     GGCC
Sbjct:   203 NGIKIGPQHAATNATHAGNQGGQQAGGGCC 232

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61105 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 97/150 (64%), Positives = 113/150 (75%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct:    63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct:   123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query:   135 SGIKVG--YGRGQGPSGARDGTVSQRGGCC 162
             +GIK+G  +           G     GGCC
Sbjct:   183 NGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61019 RAB2A "Ras-related protein Rab-2A" [Homo sapiens (taxid:9606)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 97/150 (64%), Positives = 113/150 (75%)

Query:    15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
             AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct:    63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query:    75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
             L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N+ 
Sbjct:   123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query:   135 SGIKVG--YGRGQGPSGARDGTVSQRGGCC 162
             +GIK+G  +           G     GGCC
Sbjct:   183 NGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61105	RAB2A_CANFA	No assigned EC number	0.7301	0.7730	0.5943	yes	no
P49104	RAB2B_MAIZE	No assigned EC number	0.8125	0.7852	0.6095	N/A	no
P49103	RAB2A_MAIZE	No assigned EC number	0.8188	0.7791	0.6076	N/A	no
Q39570	YPTC4_CHLRE	No assigned EC number	0.7284	0.9079	0.6948	N/A	no
P53994	RAB2A_MOUSE	No assigned EC number	0.6533	0.9079	0.6981	yes	no
P05712	RAB2A_RAT	No assigned EC number	0.7301	0.7730	0.5943	yes	no
Q38922	RAB1B_ARATH	No assigned EC number	0.8648	0.9079	0.7014	yes	no
Q01971	RAB2A_RABIT	No assigned EC number	0.7153	0.7975	0.6132	yes	no
Q90965	RAB2A_CHICK	No assigned EC number	0.7301	0.7730	0.5943	yes	no
Q5R6B6	RAB2A_PONAB	No assigned EC number	0.7301	0.7730	0.5943	yes	no
P36863	YPTV4_VOLCA	No assigned EC number	0.7350	0.9079	0.6948	N/A	no
P36409	RAB2A_DICDI	No assigned EC number	0.64	0.8773	0.6908	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-98
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-75
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-66
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-59
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-57
pfam00071	162	pfam00071, Ras, Ras family	2e-57
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-54
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-49
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-49
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-49
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-46
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-45
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-43
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-42
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-40
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-39
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-33
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	7e-33
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	8e-33
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-32
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-31
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-31
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	8e-31
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-29
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-28
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-27
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-27
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-27
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-25
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-25
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-25
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-25
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	6e-25
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-24
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	9e-24
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-23
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-23
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-21
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-21
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-21
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	4e-21
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-21
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-21
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	9e-21
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	5e-20
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-19
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-19
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-19
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-18
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	7e-18
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-17
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-16
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-16
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-16
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-16
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	8e-16
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-14
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-14
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-13
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-13
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	4e-13
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-13
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-12
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	5e-12
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	5e-10
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	6e-10
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	8e-10
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-09
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-08
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-07
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-07
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-07
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	6e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-06
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-06
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-06
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-05
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-05
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	5e-05
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-04
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-04
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	0.001
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	0.001
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.001
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	0.002
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	0.003

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  282 bits (724), Expect = 1e-98
 Identities = 121/148 (81%), Positives = 131/148 (88%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAAKI + IQ+G  D  N+ 
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNES 182

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
            GIKVGYG   G SG RDGT SQ GGCC
Sbjct: 183 YGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  222 bits (568), Expect = 2e-75
 Identities = 85/108 (78%), Positives = 95/108 (87%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH+N NM+IML+GNKCD
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           L  RR VS EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I   
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  199 bits (508), Expect = 2e-66
 Identities = 68/108 (62%), Positives = 85/108 (78%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRSIT SYYRGA GALLVYDIT RE+F +L +WL++ R++A+PN+ IMLVGNK D
Sbjct: 57  AGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSD 116

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           L  +R VS+EE E FA+E+GL F E SA+T  NVEEAF + A +IL+ 
Sbjct: 117 LEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  179 bits (458), Expect = 6e-59
 Identities = 64/102 (62%), Positives = 78/102 (76%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRSIT SYYRGA GA+LVYD+T RE+F +L  WL + +++A PN+ I+LVGNK D
Sbjct: 57  AGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSD 116

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 116
           L   R VS EE +QFAKENGLLF E SA+T +NV+EAF   A
Sbjct: 117 LEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  176 bits (449), Expect = 1e-57
 Identities = 75/108 (69%), Positives = 88/108 (81%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I L+GNK D
Sbjct: 59  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD 118

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           L  +R V+ EE +QFA ENGLLFLE SA+T +NVE+AF++TA KI QN
Sbjct: 119 LEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  176 bits (449), Expect = 2e-57
 Identities = 62/107 (57%), Positives = 80/107 (74%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR++   YYRGA G LLVYDIT R++F ++  WLE+  +HA+ N+ I+LVGNKCD
Sbjct: 56  AGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCD 115

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L  +R VS EEGE  AKE GL F+E SA+T +NVEEAF + A +IL+
Sbjct: 116 LEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  167 bits (426), Expect = 6e-54
 Identities = 61/109 (55%), Positives = 78/109 (71%), Gaps = 4/109 (3%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA GALLVYDIT++ TF ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 60  AGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSD 119

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
           L H RAV  EE + FA++NGL F+E SA    NVEEAF     ++L  I
Sbjct: 120 LRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF----KQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  155 bits (395), Expect = 3e-49
 Identities = 58/108 (53%), Positives = 78/108 (72%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G +LVYDIT  ++F ++ +W+ +  +HA+ ++  MLVGNKCD
Sbjct: 60  AGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCD 119

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           +  +R VSKEEGE  A+E G+ FLE SA+   NVEEAF+  A  IL+ 
Sbjct: 120 MEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  155 bits (394), Expect = 3e-49
 Identities = 70/105 (66%), Positives = 83/105 (79%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+TRSYYRGAAGALLVYDIT RE+FN L++WL DAR  A+P++ I+LVGNK D
Sbjct: 57  AGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKD 116

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L   R V+  E  +FA+ENGLLFLE SA T +NVEEAF+K A  I
Sbjct: 117 LEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  155 bits (393), Expect = 6e-49
 Identities = 54/106 (50%), Positives = 74/106 (69%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +RS+   YYRGAA A++VYDIT  E+F    SW+++ ++H  PN+ I L GNK D
Sbjct: 58  AGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKAD 117

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           L  +R VS EE +++A ENGLLF+E SA+T +NV E F + A K+ 
Sbjct: 118 LESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  150 bits (381), Expect = 1e-46
 Identities = 70/151 (46%), Positives = 94/151 (62%), Gaps = 3/151 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKC 73
           AGQE FRSITRSYYR + G LLV+DIT RE+F H+  WLE+AR H  P+    +LVG+KC
Sbjct: 60  AGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKC 119

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 133
           DL  +R V++EE E+ AK+ G+ ++E SART  NVEEAF     +I + I+ G L A++ 
Sbjct: 120 DLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDG 179

Query: 134 QSGIKVGYGRGQ--GPSGARDGTVSQRGGCC 162
             G+K G+  G+            S    CC
Sbjct: 180 WDGVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  145 bits (368), Expect = 3e-45
 Identities = 54/108 (50%), Positives = 79/108 (73%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 59  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 118

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           L  ++ V   E ++FA E G+ FLE SA+ A NVEEAF+  A +I + 
Sbjct: 119 LTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  141 bits (357), Expect = 5e-43
 Identities = 69/150 (46%), Positives = 97/150 (64%), Gaps = 4/150 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+ N+ IM+ GNK D
Sbjct: 69  AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD 128

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L H R+V++E+G+  A++ GL FLE SA  A NVE+AF     +I   I + AL A    
Sbjct: 129 LNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAA 188

Query: 135 SGIKVGYGRGQGPS-GARDGTVSQRGGCCS 163
           +   +    GQG +    D + + + GCCS
Sbjct: 189 ANSGLP---GQGTTINVADTSGNNKRGCCS 215

Length = 216

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  138 bits (349), Expect = 2e-42
 Identities = 53/106 (50%), Positives = 79/106 (74%), Gaps = 2/106 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKC 73
           AGQE FR++T SYYRGA G +LVYD+TRR+TF++L +WL +   ++ NP+   MLVGNK 
Sbjct: 57  AGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKI 116

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           D  + R V++EEG++FA+++ +LF+E SA+T   V++AF +   KI
Sbjct: 117 DKEN-REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  134 bits (338), Expect = 1e-40
 Identities = 50/103 (48%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT+SYYR A GA++ YDITRR +F  +  W+E+  ++   N+ ++L+GNKCD
Sbjct: 60  AGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCD 119

Query: 75  LAHRRAVSKEEGEQFAKENGLLF-LEASARTAQNVEEAFIKTA 116
           L  +R V  EE    A+  G+L  LE SA+ + NVEEAF+  A
Sbjct: 120 LEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  130 bits (330), Expect = 2e-39
 Identities = 49/105 (46%), Positives = 72/105 (68%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R ++ A++VYDIT R++F++   W++D R     ++ I+LVGNK D
Sbjct: 57  AGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTD 116

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L+ +R VS EEGE+ AKEN  +F+E SA+   NV++ F K A  +
Sbjct: 117 LSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  115 bits (291), Expect = 2e-33
 Identities = 44/106 (41%), Positives = 69/106 (65%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + ++   YYR A GA+LVYDIT  ++F  +  W+++ +Q    N+S+++VGNK D
Sbjct: 57  AGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKID 116

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           L  +R VSK E E++AK  G    E SA+T + +EE F+  A +++
Sbjct: 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  114 bits (286), Expect = 7e-33
 Identities = 50/106 (47%), Positives = 70/106 (66%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+AN  +  +LVGNK D
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           LA RR VS++  E+F+    + +LE SA+ + NVE+ F+  A +++
Sbjct: 124 LAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  115 bits (289), Expect = 8e-33
 Identities = 58/109 (53%), Positives = 76/109 (69%), Gaps = 2/109 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHA-NPNMSIMLVGNK 72
           AGQE FR++T SYYR A G +LVYD+TRRETF +LS  W ++   ++ N +   MLVGNK
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
            D    R VS+EEG   AKE+G LFLE SA+T +NVE+ F + A KI++
Sbjct: 130 VDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178

Length = 211

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  112 bits (283), Expect = 2e-32
 Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 1/106 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE F ++   Y R   G +LVY IT RE+F  + +  E   R     ++ I+LVGNKC
Sbjct: 55  AGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKC 114

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL + R VS EEGE  A+E G  FLE SA+T  N++E F     +I
Sbjct: 115 DLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  111 bits (279), Expect = 2e-31
 Identities = 48/105 (45%), Positives = 74/105 (70%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++ IML+GNK D
Sbjct: 58  AGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKAD 117

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           ++  R V +E+GE+ AKE G+ F+E SA+T  NVE AF   A ++
Sbjct: 118 MSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  110 bits (277), Expect = 3e-31
 Identities = 49/110 (44%), Positives = 76/110 (69%), Gaps = 1/110 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK D
Sbjct: 57  AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 116

Query: 75  LAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
               R +++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 117 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  108 bits (273), Expect = 8e-31
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 5/116 (4%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AGQE F+S+  ++YRGA   +LVYD+T  ++F  L SW ++    A+P    N   +++G
Sbjct: 57  AGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLG 116

Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQE 125
           NK DL  +R VS ++ +Q+ K  G + + E SA+ A NV++AF   A   L+  +E
Sbjct: 117 NKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  104 bits (261), Expect = 4e-29
 Identities = 46/98 (46%), Positives = 63/98 (64%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 58  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 117

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           +   R VS E G Q A + G  F EASA+   NV++ F
Sbjct: 118 MEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  104 bits (261), Expect = 1e-28
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 6/130 (4%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED--ARQHANPNMSI--MLVG 70
           AGQE F  +TR YY+GA GA++V+D+TR  TF  +  W  D  ++        I  +L+ 
Sbjct: 58  AGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLA 117

Query: 71  NKCDLAHRR-AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128
           NKCDL   R A   E+ +QF KENG + + E SA+   N+EEA       IL+N +    
Sbjct: 118 NKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQS 177

Query: 129 DAVNDQSGIK 138
              ++ + I 
Sbjct: 178 PEPDEDNVID 187

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =   99 bits (250), Expect = 2e-27
 Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 1/99 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE F ++   Y R   G LLVY IT R++F  +  + E   R     ++ I+LVGNKC
Sbjct: 56  AGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKC 115

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           DL   R VS EEG++ A++ G  FLE SA+   NV+EAF
Sbjct: 116 DLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 99.6 bits (249), Expect = 3e-27
 Identities = 45/99 (45%), Positives = 62/99 (62%), Gaps = 1/99 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE F ++   Y R   G LLVY IT R++F  ++ + E   R     ++ I+LVGNKC
Sbjct: 58  AGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKC 117

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           DL + R VS EEG++ A++ G  FLE SA+   NV+EAF
Sbjct: 118 DLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 99.4 bits (248), Expect = 5e-27
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 7/109 (6%)

Query: 9   FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-----N 63
           F+ L  +G   +  +   +Y+   G LLVYD+T R++F  L SWL++ +Q   P     N
Sbjct: 53  FFDL--SGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMEN 110

Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           + +++  NK DL   RAVS++EG  +A+  G  + E SA T + V E F
Sbjct: 111 IVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 96.0 bits (239), Expect = 1e-25
 Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 15  AGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNK 72
           AGQE FR S+ + YYR     + VYD+T   +F+ L SW+E+  QH+ PN    +LVGNK
Sbjct: 59  AGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNK 118

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASAR---TAQNVEEAFIKTAAKI 119
           CDL  +  V  +  ++FA  + +   E SA+      +VE  F+  A K+
Sbjct: 119 CDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 95.3 bits (237), Expect = 2e-25
 Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 5/100 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
           AGQE FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA   NP+  I+L+GN
Sbjct: 71  AGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPD--IVLIGN 128

Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 111
           K DL  +R VS+ +  + A + G+ + E SA T QNVE+A
Sbjct: 129 KADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 94.4 bits (235), Expect = 3e-25
 Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 1/99 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + +I  +Y+R   G LLV+ IT  E+F  L+ + E   R   + N+ ++LVGNKC
Sbjct: 56  AGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKC 115

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           DL  +R VS EE    A++ G+ ++E SA+T  NV++ F
Sbjct: 116 DLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 94.3 bits (234), Expect = 4e-25
 Identities = 43/108 (39%), Positives = 67/108 (62%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +++IT+ YYR A G  LVYDI+   ++ H+  W+ D  ++A   +  +L+GNK D
Sbjct: 57  AGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD 116

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
              +R V  E+G + AKE G+ F E SA T +N++E+F +    +LQ 
Sbjct: 117 EEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 94.0 bits (233), Expect = 6e-25
 Identities = 47/105 (44%), Positives = 66/105 (62%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R +A A++VYDIT R++F + + W++D       ++ I LVGNK D
Sbjct: 37  AGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 96

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L   R V+ EEG Q A+E   +F E SA+   N++  F K AAK+
Sbjct: 97  LGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 94.2 bits (234), Expect = 1e-24
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL++  Q+ + ++  +LVGNK D
Sbjct: 63  AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKND 121

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
              R+ V  E+  +FA + G+   E SA+   NVEE F      +L
Sbjct: 122 DPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 91.4 bits (227), Expect = 9e-24
 Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGN 71
           AGQE + ++   + R   G +LVY IT R TF  +  + E  ++    +  ++ IM+VGN
Sbjct: 55  AGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN 114

Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127
           KCD  + R VS EEG   A+  G  F+EASA+T  NVE AF      + Q  Q G 
Sbjct: 115 KCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ 170

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 89.4 bits (222), Expect = 3e-23
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 1/104 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F +IT++YYRGA   +LV+  T RE+F  + SW E        ++ ++LV  K D
Sbjct: 59  AGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKID 117

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118
           L  +  ++ EE E  AK   L     S +   NV E F   A K
Sbjct: 118 LLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 89.2 bits (221), Expect = 6e-23
 Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 1/106 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           +GQ  F +I RSY RGA G +LVYDIT R +F+ +  W+++  +HA P +  +LVGN+  
Sbjct: 63  SGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLH 121

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           LA +R V+ E+ + +A+ NG+ F E S     N+ E+F + A  +L
Sbjct: 122 LAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 85.8 bits (212), Expect = 2e-21
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +RS+   YYRGA G L+VYD T RE +      WLE+ R+ A  ++ I+LVGNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128
           DL   ++ S+E   Q  +E  LL L   A   +    A ++T+AK L       L
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL 176

Length = 219

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 84.9 bits (210), Expect = 3e-21
 Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 1/112 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L VY IT R +F  ++S+ E   R      + ++LVGNKC
Sbjct: 61  AGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           DL   R VS  EG++ AK  G+ FLE SA+   NV+EAF +   +I + ++E
Sbjct: 121 DLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE 172

Length = 189

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 84.0 bits (208), Expect = 3e-21
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 1/99 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKC 73
           AGQE F ++   Y R   G LLV+ +T R +F  +  +     +  + +   ++LVGNK 
Sbjct: 58  AGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKA 117

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           DL H+R VS+EEG++ A++  + ++E SA+   NV++AF
Sbjct: 118 DLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 84.1 bits (208), Expect = 4e-21
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 1/104 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKC 73
           AGQE F  +  + +   A   +VYD+T   +FN+ S W+   R H++   +  +LVGNKC
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 117
           DL  RR V   + +  A+ N L F E SA+     E  F+  A 
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 83.6 bits (207), Expect = 4e-21
 Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I  R++F  + ++ E   R   + ++ ++LVGNKC
Sbjct: 57  AGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DLA R  VS  +G+  AK  G+ ++E SA+T Q VEEAF     +I
Sbjct: 117 DLAART-VSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 83.5 bits (207), Expect = 5e-21
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 17  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCD 74
           Q           R A G +LVY IT R +F+ +S  L+  R+    +  + ++LVGNK D
Sbjct: 59  QNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFIK 114
           L H R VS EEG++ A E G LF E SA      V+  F +
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHE 159

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 83.4 bits (207), Expect = 9e-21
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA--RQHANPNMSIMLVGNK 72
           AGQ+ +  + + Y  G  G +LVY +T R++F  +   + D         ++ I+LVGNK
Sbjct: 57  AGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKV-IYDKILDMLGKESVPIVLVGNK 115

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
            DL   R VS EEG++ A+  G  FLE+SA+  +NVEEAF      +++ I+
Sbjct: 116 SDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF----ELLIEEIE 163

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 81.0 bits (200), Expect = 5e-20
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AG E F S+   Y +   G ++VY +  ++TF  +    +   R      + I+LVGNK 
Sbjct: 57  AGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           DL   R VS  EG   A+E G  F+E SA++   V E F +   ++ 
Sbjct: 117 DLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 80.3 bits (198), Expect = 2e-19
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E + +++R YYRGA  A++ YD+T   +F     W+++ +     +  I L G K D
Sbjct: 58  AGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSD 116

Query: 75  LAH----RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           L       R V   + + FA E      E S++T QNV+E F        Q + E  +  
Sbjct: 117 LIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF--------QKVAEDFVSR 168

Query: 131 VNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 162
            N+Q   + G   GQ  +       S    CC
Sbjct: 169 ANNQMNTEKGVDLGQKKN-------SYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 79.5 bits (196), Expect = 2e-19
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AG E F ++   Y +   G +LVY IT + TFN L    E   R     ++ ++LVGNKC
Sbjct: 57  AGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 116

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL   R V KE+G+  A++ G  FLE SA+   NV E F     +I
Sbjct: 117 DLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 79.5 bits (197), Expect = 3e-19
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      LL + +    +F ++ + W  + + +  PN+ I+LVG K 
Sbjct: 56  AGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY-CPNVPIILVGTKI 114

Query: 74  DL-----------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           DL             ++ ++ EEGE+ AKE G + ++E SA T + ++E F   A + 
Sbjct: 115 DLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF-DEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNK 72
           AGQE + +I R YYR    +L V+DI     +    L    ++   HA   + I+LVGNK
Sbjct: 59  AGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNK 118

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
            DL   + +       FAK NG   +  SA T +N++ AF
Sbjct: 119 IDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 75.6 bits (186), Expect = 7e-18
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 2/108 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKC 73
           AG E F ++   Y +   G LLVY +T   + N L    E   R   + N+ ++LVGNK 
Sbjct: 57  AGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKA 116

Query: 74  DLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 120
           DL   R VS+E+G   +++ G + F E SAR   NV+E FI    +I+
Sbjct: 117 DLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 74.3 bits (183), Expect = 2e-17
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY     A++++D+T R T+ ++ +W  D       N+ I+L GNK D
Sbjct: 57  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVD 115

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
           +  R+   K +   F ++  L + E SA++  N E+ F+  A K+L N 
Sbjct: 116 IKDRK--VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNP 162

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 72.6 bits (178), Expect = 1e-16
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 16  GQESFRSITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGN 71
           G   F ++ R S  +G A  +LVY IT +++   L    E   +   +    + IMLVGN
Sbjct: 58  GSHQFPAMQRLSISKGHA-FILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGN 116

Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           KCD +  R VS  EG   A+     F+E SA+T  NV+E F
Sbjct: 117 KCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 73.7 bits (181), Expect = 1e-16
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 27  YYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNKCDLAHRRAVSK 83
           Y  GA    LVYDIT  ++F +L  WL       + +     ++LVGNK DL H R V+ 
Sbjct: 70  YIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTDLEHNRQVTA 129

Query: 84  EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           E+  +FA+EN +  +  SA+T   V   F + AA++L
Sbjct: 130 EKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELL 166

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 71.8 bits (176), Expect = 2e-16
 Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKC 73
           AG E F ++   Y +   G  LVY IT +++FN L    E   R     ++ ++LVGNKC
Sbjct: 57  AGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKC 116

Query: 74  DLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           DL   R VSKEEG+  A++ G   FLE SA++  NV+E F     +I
Sbjct: 117 DLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 70.7 bits (173), Expect = 4e-16
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 9   FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIML 68
           FW    AGQE F+++  SYY  A   +LV+D+TR+ T+ +LS W E+ R++  P +  ++
Sbjct: 53  FWD--TAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIV 109

Query: 69  VGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF---IKTAAK 118
           V NK DL        ++   FA+++ L     SA    NV + F   IK A  
Sbjct: 110 VANKIDLDPSVT---QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 70.3 bits (172), Expect = 8e-16
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKC 73
           AGQE F+ I  +YYRGA   ++V+D+T   +  H   WLEDA +  +P ++ + LVG K 
Sbjct: 57  AGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKK 116

Query: 74  DLAHRRAVSKEEGE--QFAKENGLLFLEASARTAQNVEEAFIKTAA 117
           DL+     +  E +  + A+E    +   SA T +NV + F + A+
Sbjct: 117 DLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 18/119 (15%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++   W  + +    PN+ I+LVG K 
Sbjct: 54  AGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKL 112

Query: 74  DL----------AHRR--AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 116
           DL          + ++   V+ E+G+  AK  G + +LE SA T + V E F   I+ A
Sbjct: 113 DLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 65.7 bits (160), Expect = 4e-14
 Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 6/103 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
           AGQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++G
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 121

Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           NK D+  R+ VS EE + + ++NG   + E SA+ A NV  AF
Sbjct: 122 NKIDIPERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 15  AGQESF-----RSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIML 68
            G + F       + R   RGA   LLV D T RE+  +     L   R+   P   I+L
Sbjct: 55  PGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IIL 111

Query: 69  VGNKCDL-AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           VGNK DL   R        E+ AK  G+   E SA+T + V+E F
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 17  QESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKC 73
           QE    +  S  +     ++VY +T R +F   + L   L  ARQ    ++ I+LVGNK 
Sbjct: 59  QEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQA--EDIPIILVGNKS 116

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           DL   R VS +EG   A      F+E SA    NV+E F
Sbjct: 117 DLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+LVGNK D
Sbjct: 66  AGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVD 124

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           +  R+   K     F ++  L + + SA++  N E+ F+  A ++  +
Sbjct: 125 VKDRQV--KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170

Length = 215

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVD 128

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + +R+   K +   F ++  L + E SA++  N E+ F+  A K+  +
Sbjct: 129 VKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174

Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKC 73
           AGQ  F ++   Y R   G ++ Y +T R +F   S + E   R     ++ ++LVGNK 
Sbjct: 58  AGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKV 117

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128
           DL  +R V+ EEG   A+E    F E SA     +++AF     +I +     AL
Sbjct: 118 DLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 60.8 bits (147), Expect = 5e-12
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 52  AGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 110

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+  +K     F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 111 VKDRKVKAKS--ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 167

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 16/122 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ Y +    +  N    W  +   H  P   I+LVG K 
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKT 118

Query: 74  DL-AHRRAVSK-----------EEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKIL 120
           DL   + +VSK           E+GE  AK    + ++E SA+  +NV+E F   A  + 
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF-DAAINVA 177

Query: 121 QN 122
            +
Sbjct: 178 LS 179

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 14/117 (11%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    YRGA   LL + +  + ++ N L  W+ + R +A P + I+LVG K 
Sbjct: 57  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKL 115

Query: 74  DLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119
           DL   +           ++  +GE+  K+ G   ++E S++T QNV+  F   A K+
Sbjct: 116 DLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-DAAIKV 171

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 54.5 bits (131), Expect = 8e-10
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 11/116 (9%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE F  +    Y      +L + +   ++  N  S WL + R H  P + ++LV  KC
Sbjct: 56  AGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKC 114

Query: 74  DL--------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKIL 120
           DL             +S EEG   AK  N   +LE SA+  + V EAF + A   L
Sbjct: 115 DLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL 170

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 15/112 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQ+ F  +    Y      LL + +    +F ++S  W+ + R+H NP   I+LVG + 
Sbjct: 56  AGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQA 114

Query: 74  DL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL               + VS+   +  A++ G   ++E SA T +N++E F
Sbjct: 115 DLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 15/113 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + I   ++  N    W  + + H  PN+ I+LVGNK 
Sbjct: 57  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 115

Query: 74  DLAH------------RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFI 113
           DL +            +  V  EEG   A++     +LE SA+T + V E F 
Sbjct: 116 DLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 33/131 (25%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG+E F  +   Y RGAA  +L YD++  ++   L          AN +    +VGNK D
Sbjct: 52  AGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLD 111

Query: 75  LAH-------------------RRAVSKEEGEQFAKE----NGL----------LFLEAS 101
           L                     +R V+ E+ + F K       L          +  E S
Sbjct: 112 LTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETS 171

Query: 102 ARTAQNVEEAF 112
           A+T  NV+E F
Sbjct: 172 AKTGYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 9   FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS---WLEDARQHANPNMS 65
            W     G+E  +     + + A   LLVYD+T RE+ N +S    WL + R+     + 
Sbjct: 52  IWDF--GGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIP 108

Query: 66  IMLVGNKC 73
           ++LVGNK 
Sbjct: 109 VILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 14/106 (13%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGN 71
           GQ+  R + + YY    G + V D + R    E  N L   L +          ++++ N
Sbjct: 52  GQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEE---LKGAPLLILAN 108

Query: 72  KCDLAHRRAVSKEEGEQFAKENGLL-----FLEASARTAQNVEEAF 112
           K DL    A+++ E  +      +          SA T   ++E  
Sbjct: 109 KQDLPG--ALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 16/93 (17%)

Query: 35  LLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCD----------LAHRRA--V 81
           L+ +DI+R ET  + L  W  + R+   PN  ++LVG K D          L+++R   V
Sbjct: 77  LICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLRTDLSTLTELSNKRQIPV 135

Query: 82  SKEEGEQFAKENG-LLFLEASARTAQN-VEEAF 112
           S E+G   AK+ G   ++E SA+T++N V + F
Sbjct: 136 SHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 9   FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIM 67
           FW L   GQE  RS+   YY  + G + V D T RE FN   S  E      A   + ++
Sbjct: 55  FWDL--GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLL 112

Query: 68  LVGNKCDLAHRRAVS--KEEGEQFAKENG---LLFLEASARTAQNVEEA 111
           ++ NK DL    +V+  KE  +      G    L    SA   + VEE 
Sbjct: 113 VLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 35  LLVYDITRRETFNHLSSWLEDARQ---------HANPNMSIMLVGNKCDLAHRRAVSKEE 85
           +LV+ +  RE+F  +    E   +           N  + +++ GNK D    R V ++E
Sbjct: 76  ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE 135

Query: 86  GEQF-AKENGLLFLEASARTAQNVEEAF 112
            EQ    +    + E SA+   N++E F
Sbjct: 136 VEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 20/90 (22%)

Query: 35  LLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93
            LVY + R  T   + + WL   R+     + I+LVGNK DL       ++   Q   E 
Sbjct: 77  CLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDL-------RDGSSQAGLEE 128

Query: 94  GLLF-----------LEASARTAQNVEEAF 112
            +L            +E SA+T  NV E F
Sbjct: 129 EMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 57  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 115

Query: 74  D----------LAHRR--AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 112
           D          L  ++   ++  +G   AKE   + +LE SA T + ++  F
Sbjct: 116 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)

Query: 28  YRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD----------LA 76
           Y  +   LL +DI+R E F+  L  W  +   +  P+  I+L+G K D          L+
Sbjct: 82  YSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLRTDLSTLMELS 140

Query: 77  HRRA--VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 122
           +++   +S E+G   AK+ G   +LE SA T++    +  +TA+ +  N
Sbjct: 141 NQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCIN 189

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 13/110 (11%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y  A   L+ + I   ++  ++ + W+E+ R++  PN+ ++LVG K 
Sbjct: 57  AGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKK 115

Query: 74  DL----------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL          A    V  ++ +  A+  G   ++E SA T + V++ F
Sbjct: 116 DLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 10  WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV 69
           W L   GQ  F ++     + A   L ++D+TR+ T N +  W   AR      + I LV
Sbjct: 54  WDL--GGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LV 110

Query: 70  GNKCDL 75
           G K DL
Sbjct: 111 GTKYDL 116

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F N    W+ +   H  P    +LVG + 
Sbjct: 57  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQI 115

Query: 74  DL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL              ++ ++ E GE+ A++   + ++E SA T + ++  F
Sbjct: 116 DLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 15/107 (14%)

Query: 28  YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK----CDLAHRRAVSK 83
           Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K     DL+  R +SK
Sbjct: 70  YPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLSTLRELSK 129

Query: 84  --------EEGEQFAKENGLL-FLEASARTAQN-VEEAF-IKTAAKI 119
                   E+G   A++ G + ++E S+R ++N V + F + T A +
Sbjct: 130 QRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASV 176

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 15/94 (15%)

Query: 28  YRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLA---------- 76
           Y  +   L+ +DI+R ET  + L  W  + ++   PN  ++LVG K DL           
Sbjct: 74  YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELS 132

Query: 77  -HRRA-VSKEEGEQFAKENGLL-FLEASARTAQN 107
            HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 133 NHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 73
           +G  SF ++ +   +      LVY +   E+F  +    E+  +   +  + I++VGNK 
Sbjct: 55  SGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKI 114

Query: 74  DLAHRRAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAF 112
           D    R V   +     +    NG  F+EASA+  +NV E F
Sbjct: 115 DSLAERQVEAADALSTVELDWNNG--FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 19/91 (20%)

Query: 52  WLEDARQH-----------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA 100
           ++ DA Q                  I++V NK DL     VSK E E     NG   +  
Sbjct: 302 FVLDASQPLDKEDLALIELLPKKKPIIVVLNKADL-----VSKIELESEKLANGDAIISI 356

Query: 101 SARTAQNVE---EAFIKTAAKILQNIQEGAL 128
           SA+T + ++   EA  +   K L N +   L
Sbjct: 357 SAKTGEGLDALREAIKQLFGKGLGNQEGLFL 387

Length = 454

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 21/98 (21%)

Query: 35  LLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAH---------------- 77
           LL + I    +  ++ + W  + R    P + ++LVG K DL +                
Sbjct: 92  LLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARP 150

Query: 78  ---RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
                 +  E G   AKE G+ + E S  T   V++ F
Sbjct: 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
           GQES RS   +YY      +LV D T RE        L     H +   +++LV  NK D
Sbjct: 68  GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQD 127

Query: 75  L 75
           L
Sbjct: 128 L 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.98
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.98
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.97
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.97
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.97
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.96
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.96
PLN03108	210	Rab family protein; Provisional	99.96
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.96
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.96
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.96
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
PLN03110	216	Rab GTPase; Provisional	99.95
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.95
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.95
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.94
PTZ00099	176	rab6; Provisional	99.94
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.94
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.94
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.94
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.94
KOG0394	210	consensus Ras-related GTPase [General function pre	99.94
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.94
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.93
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.93
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.93
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.93
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.93
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.92
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.92
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.92
PTZ00369	189	Ras-like protein; Provisional	99.92
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.92
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.92
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.92
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.92
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.91
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.91
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.91
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.91
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.91
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.91
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
PLN03118	211	Rab family protein; Provisional	99.91
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.91
KOG0395	196	consensus Ras-related GTPase [General function pre	99.91
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.9
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.9
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.9
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.9
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.9
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.9
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.9
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.9
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.9
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.89
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.89
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.89
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.89
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.89
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.89
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.89
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.89
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.89
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.88
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.88
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.88
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.88
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.88
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.88
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.88
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.88
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.88
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.87
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.87
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.87
PLN00223	181	ADP-ribosylation factor; Provisional	99.86
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.86
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.86
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.86
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.86
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.85
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.85
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.85
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.85
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.85
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.85
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.85
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.85
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.84
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.84
PTZ00133	182	ADP-ribosylation factor; Provisional	99.84
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.84
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.84
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.83
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.83
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.83
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.83
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.83
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.83
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.82
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.81
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.81
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.8
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.8
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.8
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.79
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.79
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.79
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.78
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.78
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.78
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.77
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.77
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.75
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.75
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.72
PLN00023	334	GTP-binding protein; Provisional	99.71
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.7
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.7
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.69
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.69
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.69
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.68
PRK12299	335	obgE GTPase CgtA; Reviewed	99.67
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.67
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.67
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.65
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.63
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.62
COG1100	219	GTPase SAR1 and related small G proteins [General	99.62
KOG1673	205	consensus Ras GTPases [General function prediction	99.61
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.61
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.6
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.59
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.59
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.59
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.58
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.58
COG2229	187	Predicted GTPase [General function prediction only	99.57
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.57
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.57
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.55
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.55
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.55
PRK04213	201	GTP-binding protein; Provisional	99.54
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.54
PRK03003	472	GTP-binding protein Der; Reviewed	99.54
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.53
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.52
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.51
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.5
cd00881	189	GTP_translation_factor GTP translation factor fami	99.5
PRK12297	424	obgE GTPase CgtA; Reviewed	99.48
PRK03003	472	GTP-binding protein Der; Reviewed	99.48
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.48
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.48
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.47
PRK05433	600	GTP-binding protein LepA; Provisional	99.46
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.45
PRK05306	787	infB translation initiation factor IF-2; Validated	99.44
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.44
CHL00189	742	infB translation initiation factor 2; Provisional	99.44
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.44
PRK15494	339	era GTPase Era; Provisional	99.44
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.43
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.43
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.43
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.43
PRK11058	426	GTPase HflX; Provisional	99.41
PRK12296	500	obgE GTPase CgtA; Reviewed	99.4
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.4
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.4
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.4
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.4
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.37
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.37
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.37
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.36
PRK12298	390	obgE GTPase CgtA; Reviewed	99.32
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.32
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.3
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.3
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.3
PRK00093	435	GTP-binding protein Der; Reviewed	99.3
PRK00093	435	GTP-binding protein Der; Reviewed	99.29
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.29
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.28
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.28
PRK00089	292	era GTPase Era; Reviewed	99.27
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.27
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.26
KOG1145	683	consensus Mitochondrial translation initiation fac	99.25
PRK12317	425	elongation factor 1-alpha; Reviewed	99.24
PRK04004	586	translation initiation factor IF-2; Validated	99.24
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.23
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.22
PRK10218	607	GTP-binding protein; Provisional	99.21
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.21
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.2
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.2
COG1159	298	Era GTPase [General function prediction only]	99.2
PRK14845	1049	translation initiation factor IF-2; Provisional	99.19
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.18
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.16
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.16
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.14
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.14
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.1
PRK12289	352	GTPase RsgA; Reviewed	99.1
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.1
PRK09866	741	hypothetical protein; Provisional	99.09
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.09
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.08
PRK00098	298	GTPase RsgA; Reviewed	99.06
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.06
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.04
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.04
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.04
PRK12736	394	elongation factor Tu; Reviewed	99.04
PLN00043	447	elongation factor 1-alpha; Provisional	99.02
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.02
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.01
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.01
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.99
PRK12288	347	GTPase RsgA; Reviewed	98.98
COG1160	444	Predicted GTPases [General function prediction onl	98.97
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.96
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.96
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.95
PRK12735	396	elongation factor Tu; Reviewed	98.94
COG0486	454	ThdF Predicted GTPase [General function prediction	98.93
COG1160	444	Predicted GTPases [General function prediction onl	98.93
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.92
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.91
PRK13768	253	GTPase; Provisional	98.89
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.88
PRK13351	687	elongation factor G; Reviewed	98.88
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.87
CHL00071	409	tufA elongation factor Tu	98.84
PRK00049	396	elongation factor Tu; Reviewed	98.81
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.8
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.8
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.79
COG2262	411	HflX GTPases [General function prediction only]	98.79
PLN03127	447	Elongation factor Tu; Provisional	98.77
PRK12740	668	elongation factor G; Reviewed	98.76
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.73
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.72
PTZ00141	446	elongation factor 1- alpha; Provisional	98.68
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.67
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.66
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.66
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.65
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.65
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.65
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.64
PLN03126	478	Elongation factor Tu; Provisional	98.63
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.62
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.59
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.56
PRK12739	691	elongation factor G; Reviewed	98.55
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.55
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.5
PRK13796	365	GTPase YqeH; Provisional	98.5
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.49
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.48
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.45
COG0536	369	Obg Predicted GTPase [General function prediction	98.44
PRK01889	356	GTPase RsgA; Reviewed	98.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.37
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.37
KOG0090	238	consensus Signal recognition particle receptor, be	98.37
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.3
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.29
COG0218	200	Predicted GTPase [General function prediction only	98.27
COG1084	346	Predicted GTPase [General function prediction only	98.26
COG1162	301	Predicted GTPases [General function prediction onl	98.18
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.18
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.18
COG1163	365	DRG Predicted GTPase [General function prediction	98.16
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.14
PRK00007	693	elongation factor G; Reviewed	98.13
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.11
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.11
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.11
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.1
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.09
PRK07560	731	elongation factor EF-2; Reviewed	98.09
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.09
PRK09602	396	translation-associated GTPase; Reviewed	98.07
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.04
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.99
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.98
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.96
PTZ00416	836	elongation factor 2; Provisional	97.92
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.85
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.84
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.82
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.77
COG3596	296	Predicted GTPase [General function prediction only	97.77
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.74
KOG0099	379	consensus G protein subunit Galphas, small G prote	97.74
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	97.68
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.66
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.6
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.58
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.57
KOG0460	449	consensus Mitochondrial translation elongation fac	97.57
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.53
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.5
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.49
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.46
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.44
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.37
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.35
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.35
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.3
KOG3886	295	consensus GTP-binding protein [Signal transduction	97.28
cd03110	179	Fer4_NifH_child This protein family's function is	97.25
COG1161	322	Predicted GTPases [General function prediction onl	97.02
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.0
KOG0466	466	consensus Translation initiation factor 2, gamma s	96.98
KOG0465	721	consensus Mitochondrial elongation factor [Transla	96.93
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.9
KOG3887	347	consensus Predicted small GTPase involved in nucle	96.86
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.76
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	96.73
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	96.6
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	96.6
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.53
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	96.37
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.36
PTZ00258	390	GTP-binding protein; Provisional	96.3
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.16
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.05
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	95.94
KOG2484	435	consensus GTPase [General function prediction only	95.86
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	95.8
KOG0467	887	consensus Translation elongation factor 2/ribosome	95.62
KOG2423	572	consensus Nucleolar GTPase [General function predi	95.43
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	95.39
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.35
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	95.19
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.18
KOG1143	591	consensus Predicted translation elongation factor	95.07
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	95.05
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	94.86
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	94.83
PHA02518	211	ParA-like protein; Provisional	94.56
TIGR00064	272	ftsY signal recognition particle-docking protein F	94.51
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	94.42
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	94.37
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	94.35
KOG4273	418	consensus Uncharacterized conserved protein [Funct	94.35
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	94.17
KOG0410	410	consensus Predicted GTP binding protein [General f	94.07
COG1149	284	MinD superfamily P-loop ATPase containing an inser	93.96
PRK09601	364	GTP-binding protein YchF; Reviewed	93.78
cd03111	106	CpaE_like This protein family consists of proteins	93.62
PRK14974	336	cell division protein FtsY; Provisional	93.28
cd02036	179	MinD Bacterial cell division requires the formatio	93.05
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	92.75
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	92.04
PRK10416	318	signal recognition particle-docking protein FtsY;	92.02
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	91.92
cd03112	158	CobW_like The function of this protein family is u	91.75
KOG0464	753	consensus Elongation factor G [Translation, riboso	91.69
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	91.21
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	90.44
TIGR00959	428	ffh signal recognition particle protein. This mode	90.07
cd02117	212	NifH_like This family contains the NifH (iron prot	89.91
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	89.9
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	89.84
PRK00771	437	signal recognition particle protein Srp54; Provisi	89.8
COG3523	1188	IcmF Type VI protein secretion system component Va	89.51
cd03115	173	SRP The signal recognition particle (SRP) mediates	89.08
COG5019	373	CDC3 Septin family protein [Cell division and chro	88.4
PRK10867	433	signal recognition particle protein; Provisional	88.16
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	87.42
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	87.06
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	86.49
COG0523	323	Putative GTPases (G3E family) [General function pr	86.48
KOG2486	320	consensus Predicted GTPase [General function predi	86.21
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	86.08
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	85.63
KOG0780	483	consensus Signal recognition particle, subunit Srp	85.03
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	84.84
cd03114	148	ArgK-like The function of this protein family is u	84.33
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	84.2
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	83.97
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	83.95
PRK13849	231	putative crown gall tumor protein VirC1; Provision	83.86
CHL00175	281	minD septum-site determining protein; Validated	83.81
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	83.7
PRK10818	270	cell division inhibitor MinD; Provisional	83.04
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	82.94
cd02032	267	Bchl_like This family of proteins contains bchL an	82.51
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	82.16
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	82.13
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	81.71
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	80.24

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-32  Score=194.08  Aligned_cols=135  Identities=41%  Similarity=0.708  Sum_probs=122.5

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      +.+||||  |||||||+++...||++|||+|||||+++.+||+.+..|+.++.++...++|.+|||||+|+.+.+.++.+
T Consensus        58 iKlQIWD--TAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~  135 (205)
T KOG0084|consen   58 IKLQIWD--TAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTE  135 (205)
T ss_pred             EEEEeee--ccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHH
Confidence            3677777  99999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceecc
Q 031249           85 EGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGY  141 (163)
Q Consensus        85 ~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (163)
                      +++.++.+++++ ++|+||+++.||++.|..|...+.++...+.........+.+++.
T Consensus       136 ~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~  193 (205)
T KOG0084|consen  136 EAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKG  193 (205)
T ss_pred             HHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence            999999999999 999999999999999999999999988877766554444444443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.6e-33  Score=194.04  Aligned_cols=147  Identities=38%  Similarity=0.691  Sum_probs=125.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      +.+.|||  |||+|+|.++.++||++|+++|+|||+++.+||..+..|++++.+..++++-+.|+|||.|+.+.+++..+
T Consensus        54 ikfeIWD--TAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~  131 (200)
T KOG0092|consen   54 IKFEIWD--TAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFE  131 (200)
T ss_pred             EEEEEEE--cCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHH
Confidence            4566777  99999999999999999999999999999999999999999999988888888999999999998999999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCccCC
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS  163 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (163)
                      ++..+++..++.|+|+||+++.||+++|..|.+.+.....+......+.+.+.-+....          .+...++||+
T Consensus       132 ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~----------~~~~~~~~C~  200 (200)
T KOG0092|consen  132 EAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQ----------EPARPSGCCA  200 (200)
T ss_pred             HHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccccccccccceecccCC----------CCcCcCCcCC
Confidence            99999999999999999999999999999999999887776654222222222222111          5667788885

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.7e-31  Score=189.70  Aligned_cols=157  Identities=46%  Similarity=0.786  Sum_probs=134.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      +..||||  |||||||+++...||++|.|+++|||++...+|+.+..|+.+++.+.+++++++|||||+||...+.++.+
T Consensus        63 vkaqIWD--TAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te  140 (222)
T KOG0087|consen   63 VKAQIWD--TAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTE  140 (222)
T ss_pred             EEEeeec--ccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchh
Confidence            3567787  99999999999999999999999999999999999999999999999899999999999999988999999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCc---eeccCCCCCCCCCCCCCCcCCCcc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGI---KVGYGRGQGPSGARDGTVSQRGGC  161 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  161 (163)
                      ++..+++..++.++++||.++.||+..|..++..|+....++...........   ..++..+..+.+...-++.++++|
T Consensus       141 ~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~c  220 (222)
T KOG0087|consen  141 DGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGC  220 (222)
T ss_pred             hhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCC
Confidence            99999999999999999999999999999999999999888876666553222   223333333334444467778888


Q ss_pred             CC
Q 031249          162 CS  163 (163)
Q Consensus       162 ~~  163 (163)
                      |+
T Consensus       221 c~  222 (222)
T KOG0087|consen  221 CS  222 (222)
T ss_pred             CC
Confidence            86

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.9e-31  Score=186.13  Aligned_cols=134  Identities=69%  Similarity=1.106  Sum_probs=125.5

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      +++||||  |+|+|.|+++++.||++|-|+|+|||++..+||..+..|+..++++..++..++|+|||+|+...++|..+
T Consensus        55 IKlqiwD--taGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~E  132 (216)
T KOG0098|consen   55 IKLQIWD--TAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKE  132 (216)
T ss_pred             EEEEEEe--cCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHH
Confidence            4566777  99999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCC-ceec
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSG-IKVG  140 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~-~~~~  140 (163)
                      +++.|++++|+.++++||+++.+|++.|..+...+.+..+.+.....+..++ ++++
T Consensus       133 EGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~~~~~~~~k~k~k~~  189 (216)
T KOG0098|consen  133 EGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGVFDDINESKGKIKIG  189 (216)
T ss_pred             HHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcccccccccccceeec
Confidence            9999999999999999999999999999999999999999999888888777 4444

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-30  Score=185.92  Aligned_cols=120  Identities=48%  Similarity=0.873  Sum_probs=113.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      +.+|+||  |+|||+|..+.+.|++.|+++++|||++++.||+.+..|++.+.++...++|++|||||+|+...++|+.+
T Consensus        61 i~lQiWD--taGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e  138 (207)
T KOG0078|consen   61 IKLQIWD--TAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKE  138 (207)
T ss_pred             EEEEEEE--cccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHH
Confidence            4677777  99999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      .++++|.++|+.|+|+||++|.||++.|..|.+.+..+....
T Consensus       139 ~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  139 RGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence            999999999999999999999999999999999999865554

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=7.5e-29  Score=169.84  Aligned_cols=155  Identities=39%  Similarity=0.662  Sum_probs=134.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CC-CeEEEEeeCCCCCCCCcc
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PN-MSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~-~p~ilv~nK~D~~~~~~v   81 (163)
                      .+.+||||  |||||+|+++.+.||+++-|+++|||+++.+||+.+..|+++...+.. |. +.+.|||+|.|+...++|
T Consensus        57 riklqlwd--tagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV  134 (213)
T KOG0091|consen   57 RIKLQLWD--TAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV  134 (213)
T ss_pred             EEEEEEee--ccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc
Confidence            35778888  999999999999999999999999999999999999999999877665 44 445788999999999999


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCcc
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC  161 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (163)
                      +.++++.++...|+.|+|+||+++.||++.|..|.+.+...+.+++...+-.-.+.+......-.   .+..-..+++.|
T Consensus       135 t~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~---~s~~~~~P~k~c  211 (213)
T KOG0091|consen  135 TAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIP---RSPSRKQPSKPC  211 (213)
T ss_pred             cHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCC---CcccccCCCCCC
Confidence            99999999999999999999999999999999999999999999988888888888875554433   223334566778


Q ss_pred             CC
Q 031249          162 CS  163 (163)
Q Consensus       162 ~~  163 (163)
                      ||
T Consensus       212 ~C  213 (213)
T KOG0091|consen  212 QC  213 (213)
T ss_pred             CC
Confidence            76

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-29  Score=177.27  Aligned_cols=124  Identities=42%  Similarity=0.637  Sum_probs=112.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC-CCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +.+||||  |||||||+.+++.|++++.++|+|||+++..||+....|++.++..+.. ++-++|||||.||.+.+++..
T Consensus        71 vrLQlWD--TAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~  148 (221)
T KOG0094|consen   71 VRLQLWD--TAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI  148 (221)
T ss_pred             EEEEEEe--cccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhH
Confidence            5678888  9999999999999999999999999999999999999999999998876 488899999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA  130 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~  130 (163)
                      +++...+++++..|+++||+.|.||..+|..+...+.........++
T Consensus       149 eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~~~~~~~  195 (221)
T KOG0094|consen  149 EEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEVLEILSK  195 (221)
T ss_pred             HHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccccccccc
Confidence            99999999999999999999999999999998777776655333333

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=3.8e-29  Score=170.58  Aligned_cols=122  Identities=35%  Similarity=0.697  Sum_probs=113.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |+|||+|..+-+.||++++++++|||++|.+||+.+..|..+++......+-+++||||+|+.+++.++.++
T Consensus        63 ~L~IWD--TAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qe  140 (218)
T KOG0088|consen   63 DLHIWD--TAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQE  140 (218)
T ss_pred             eeeeee--ccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHH
Confidence            456666  999999999999999999999999999999999999999999999887778999999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  129 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~  129 (163)
                      +..+++.-|..|+++||+.+.||.++|+.|....++.....+..
T Consensus       141 Ae~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~  184 (218)
T KOG0088|consen  141 AEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRT  184 (218)
T ss_pred             HHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999999999999999999999999999988877655543

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.6e-28  Score=165.73  Aligned_cols=131  Identities=37%  Similarity=0.588  Sum_probs=116.8

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +|..+.|.+|||||+|+|+.+...|++..+++++|||+++.+||.....|+++++... +.+|-+|||||.|+++.+.+.
T Consensus        53 ~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~  131 (198)
T KOG0079|consen   53 NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVD  131 (198)
T ss_pred             CCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeee
Confidence            4555555555599999999999999999999999999999999999999999999887 579999999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH-hhcccccccCC
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI-QEGALDAVNDQ  134 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~-~~~~~~~~~~~  134 (163)
                      .++++.|+...++.+||+||+.+.|++.+|.-|.+++++.. .++....++..
T Consensus       132 t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~~~~r~~~  184 (198)
T KOG0079|consen  132 TEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESVEQQRADA  184 (198)
T ss_pred             hHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcHHHHhhcc
Confidence            99999999999999999999999999999999999998887 44444444443

>PLN03108 Rab family protein; Provisional

Probab=99.96  E-value=1.9e-27  Score=174.16  Aligned_cols=155  Identities=79%  Similarity=1.211  Sum_probs=142.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|+++|..++..+++++|++++|||+++..+|..+..|+..+........|+++++||.|+.+.+.+..++
T Consensus        56 ~l~l~D--t~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~  133 (210)
T PLN03108         56 KLQIWD--TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE  133 (210)
T ss_pred             EEEEEe--CCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHH
Confidence            455666  999999999999999999999999999999999999999998877665679999999999998777788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCccC
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC  162 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (163)
                      +..+++.++++++++||+++.||+++|.++++.+.+...+......++..+...+.+.-+..++.+++++++-.|||
T Consensus       134 ~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
T PLN03108        134 GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC  210 (210)
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence            99999999999999999999999999999999999988888888888889999999988889999999999999999

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2e-28  Score=165.12  Aligned_cols=121  Identities=39%  Similarity=0.724  Sum_probs=114.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      .+.+|+||  |+|+|+|+.+...|+++|+++|++||+++.+||..++.|.-.+..+...+.|+|||+||+|+.+++.++.
T Consensus        69 RiklQiwD--TagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~  146 (193)
T KOG0093|consen   69 RIKLQIWD--TAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISH  146 (193)
T ss_pred             EEEEEEEe--cccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeH
Confidence            35788888  9999999999999999999999999999999999999999999988888899999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      +.+..++.+.|+.|||.||+.+.||+++|+.++..|-+.+.+.
T Consensus       147 e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  147 ERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999988776654

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.9e-28  Score=163.62  Aligned_cols=155  Identities=51%  Similarity=0.773  Sum_probs=137.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      +.+||||  |+|||+|++..+.||++|-++++|||+++.++|+++-.|+..++....+.+-++|+|||.|+.++++++..
T Consensus        58 vKLQIWD--TAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtfl  135 (214)
T KOG0086|consen   58 VKLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFL  135 (214)
T ss_pred             EEEEEee--cccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHH
Confidence            4667777  99999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCC--CCCCCCCCCCCcCCCcc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRG--QGPSGARDGTVSQRGGC  161 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  161 (163)
                      ++..++.+..+.+.++|+.+|+||++.|-...+.|+.+.+..+..++...++++-|-.+=  +.++++.-.-..+..+|
T Consensus       136 EAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C  214 (214)
T KOG0086|consen  136 EASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC  214 (214)
T ss_pred             HHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999998775542  34444433444444444

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=3.4e-28  Score=166.22  Aligned_cols=120  Identities=43%  Similarity=0.671  Sum_probs=108.1

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .|..+.+-.|||||||+|+.+.+.||++|.|+|+|||++..++|..+..|++++.-+.. +++-.++|+||+|...++.+
T Consensus        56 dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V  135 (209)
T KOG0080|consen   56 DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVV  135 (209)
T ss_pred             cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccc
Confidence            34444444444999999999999999999999999999999999999999999977764 67788999999998778999


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +.+++..+++.+++.|+|+||++.++|...|++|+..|++-
T Consensus       136 ~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~t  176 (209)
T KOG0080|consen  136 DREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIET  176 (209)
T ss_pred             cHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999998864

>cd04120 Rab12 Rab12 subfamily

Probab=99.95  E-value=1e-26  Score=169.27  Aligned_cols=120  Identities=43%  Similarity=0.738  Sum_probs=107.2

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |+|+++|..+|..|++++|++|+|||+++++||+.+..|+..+.+....+.|++|||||+|+.+.+++..+
T Consensus        49 v~l~iwD--taGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~  126 (202)
T cd04120          49 IRLQIWD--TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQ  126 (202)
T ss_pred             EEEEEEe--CCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence            4556777  99999999999999999999999999999999999999999988776567999999999999877889989


Q ss_pred             HHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           85 EGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        85 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      ++..+++.. ++.++++||++|.||+++|+++++.+.......
T Consensus       127 ~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~~~~  169 (202)
T cd04120         127 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLD  169 (202)
T ss_pred             HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhCccc
Confidence            999999875 788999999999999999999999887654443

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=7.5e-27  Score=168.47  Aligned_cols=117  Identities=38%  Similarity=0.684  Sum_probs=106.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |+|+++|..++..+++++|++|||||++++.||+.+..|+.++.+.. ++.|++|||||.|+.+.+.++.+
T Consensus        55 ~~l~iwD--t~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~  131 (189)
T cd04121          55 VKLQLWD--TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATE  131 (189)
T ss_pred             EEEEEEe--CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHH
Confidence            3556676  99999999999999999999999999999999999999999997765 57999999999999877788999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      ++..+++..+++++++||+++.||+++|+++++.+..+..
T Consensus       132 ~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         132 QAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHG  171 (189)
T ss_pred             HHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998875444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PLN03110 Rab GTPase; Provisional

Probab=99.95  E-value=1.8e-26  Score=169.73  Aligned_cols=155  Identities=44%  Similarity=0.751  Sum_probs=122.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.+....+.|+++|+||+|+.+.+.+..+
T Consensus        61 ~~l~l~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~  138 (216)
T PLN03110         61 VKAQIWD--TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEE  138 (216)
T ss_pred             EEEEEEE--CCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHH
Confidence            3677777  99999999999999999999999999999999999999999998876667999999999999777778888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCccCC
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS  163 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (163)
                      ++..++..++++++++||+++.|++++|++++..+.+..............+  .+.+..+.........+.+.+|||+
T Consensus       139 ~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~  215 (216)
T PLN03110        139 DGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAAN--SGLPGQGTTINVADTSGNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccccccccCccc--ccCcCcCCcccccCccCCCCCCCcC
Confidence            9999999899999999999999999999999999988765444333221111  1111111111112234678889995

>cd04126 Rab20 Rab20 subfamily

Probab=99.95  E-value=7.9e-27  Score=171.82  Aligned_cols=144  Identities=28%  Similarity=0.439  Sum_probs=118.9

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-------   77 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~-------   77 (163)
                      ..+.|||  |+|+++|..++..+++++|++|+|||++++++|..+..|+..+.+...++.|++||+||+|+.+       
T Consensus        44 ~~l~iwD--t~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~  121 (220)
T cd04126          44 YNISIWD--TAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQ  121 (220)
T ss_pred             EEEEEEe--CCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccc
Confidence            3567777  9999999999999999999999999999999999999988888766556789999999999865       


Q ss_pred             ------------CCccCHHHHHHHHHHcC--------------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccc
Q 031249           78 ------------RRAVSKEEGEQFAKENG--------------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAV  131 (163)
Q Consensus        78 ------------~~~v~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~  131 (163)
                                  .+.+..+++..+++..+              ++|+|+||++|.||+++|..+++.+.....++..+..
T Consensus       122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~  201 (220)
T cd04126         122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN  201 (220)
T ss_pred             cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                        57788999999998876              6799999999999999999999999877666654221


Q ss_pred             cCCCCceeccCCCCCCCCCCCCCCcCCCccC
Q 031249          132 NDQSGIKVGYGRGQGPSGARDGTVSQRGGCC  162 (163)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (163)
                      .  .          +..=...+.+.++++||
T Consensus       202 ~--~----------~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         202 R--T----------QGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             h--h----------hccccCCCcccCCCCCC
Confidence            1  1          11112344678888998

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6e-27  Score=159.94  Aligned_cols=122  Identities=36%  Similarity=0.629  Sum_probs=111.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      -+||||  |||||+|+++...++++|.+|+++||+++++||-.+..|+.+++.+.- .+..+|+.|||.|+.+.+++...
T Consensus        68 hLQlWD--TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~  145 (219)
T KOG0081|consen   68 HLQLWD--TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSED  145 (219)
T ss_pred             EEeeec--cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHH
Confidence            466777  999999999999999999999999999999999999999999976553 45678999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  129 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~  129 (163)
                      ++..++..+++||||+||-++.||++..+.|+..+.++++.--..
T Consensus       146 qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v~~  190 (219)
T KOG0081|consen  146 QAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCVEK  190 (219)
T ss_pred             HHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999988765543

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.95  E-value=3.3e-26  Score=166.42  Aligned_cols=146  Identities=36%  Similarity=0.597  Sum_probs=117.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEeeCCCCCCCCcc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+....    ...+|++||+||.|+...+.+
T Consensus        51 ~l~l~D--t~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~  128 (201)
T cd04107          51 RLQLWD--IAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK  128 (201)
T ss_pred             EEEEEE--CCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc
Confidence            345565  99999999999999999999999999999999999999999886532    246899999999999765678


Q ss_pred             CHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCc
Q 031249           82 SKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGG  160 (163)
Q Consensus        82 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (163)
                      ..+++..+++..+ ..++++||+++.||+++|++|++.+.+.......+.+..+.....-     +    ......+.++
T Consensus       129 ~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~  199 (201)
T cd04107         129 DGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPEDGSVIDL-----K----QTTTKKKSKG  199 (201)
T ss_pred             CHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCccccccc-----c----cceeccccCC
Confidence            8899999999998 6799999999999999999999999877655554444333222111     1    2344556669


Q ss_pred             cC
Q 031249          161 CC  162 (163)
Q Consensus       161 ~~  162 (163)
                      ||
T Consensus       200 ~~  201 (201)
T cd04107         200 CC  201 (201)
T ss_pred             CC
Confidence            99

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.94  E-value=4.9e-26  Score=164.20  Aligned_cols=138  Identities=36%  Similarity=0.565  Sum_probs=116.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .++|||  |+|+++|..++..+++++|++|||||+++..+|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+.
T Consensus        48 ~l~i~D--t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~  125 (190)
T cd04144          48 MLEVLD--TAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS  125 (190)
T ss_pred             EEEEEE--CCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC
Confidence            366677  999999999999999999999999999999999999999998876542   468999999999997777788


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCccC
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC  162 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (163)
                      ..++..++..++++++++||+++.|++++|+++++.+.+......                  .+.....-...|+++||
T Consensus       126 ~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~  187 (190)
T cd04144         126 TEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ------------------GPKGGPTKKKEKKKRKC  187 (190)
T ss_pred             HHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccC------------------CCcCCCCCcccccccCc
Confidence            888888998889999999999999999999999988775555431                  23444555667777887


Q ss_pred             C
Q 031249          163 S  163 (163)
Q Consensus       163 ~  163 (163)
                      |
T Consensus       188 ~  188 (190)
T cd04144         188 V  188 (190)
T ss_pred             e
Confidence            5

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=6.2e-26  Score=162.00  Aligned_cols=115  Identities=42%  Similarity=0.654  Sum_probs=103.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..|+++||++|+|||++++.+|+.+..|+..+.....++.|++||+||+|+.+.+.+..++
T Consensus        30 ~l~iwD--t~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e  107 (176)
T PTZ00099         30 RLQLWD--TAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEE  107 (176)
T ss_pred             EEEEEE--CCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHH
Confidence            445555  999999999999999999999999999999999999999999977655678999999999997666788889


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +..++..++..++++||+++.||+++|.+|++.+.+.
T Consensus       108 ~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~  144 (176)
T PTZ00099        108 GMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL  144 (176)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            9999998999999999999999999999999887653

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.94  E-value=9.5e-26  Score=167.14  Aligned_cols=118  Identities=27%  Similarity=0.500  Sum_probs=103.4

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC------
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------   77 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~------   77 (163)
                      ..++|||  |+|+++|..+++.|++++|++|+|||+++..||+.+ ..|+..+.+.. +..|++|||||.|+.+      
T Consensus        61 v~l~iwD--TaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~  137 (232)
T cd04174          61 VELSLWD--TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLM  137 (232)
T ss_pred             EEEEEEe--CCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhh
Confidence            3456666  999999999999999999999999999999999984 78999998765 5689999999999864      


Q ss_pred             ------CCccCHHHHHHHHHHcCC-eEEEEcCCCCC-CHHHHHHHHHHHHHHHHhh
Q 031249           78 ------RRAVSKEEGEQFAKENGL-LFLEASARTAQ-NVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        78 ------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~lf~~l~~~~~~~~~~  125 (163)
                            .+.+..+++..+++..++ .|+|+||+++. ||+++|..++..+.+...+
T Consensus       138 ~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         138 ELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             hhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence                  256889999999999998 59999999998 8999999999988775333

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.8e-26  Score=152.64  Aligned_cols=154  Identities=55%  Similarity=0.872  Sum_probs=129.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+||||  |+|+|+|+...+.|++++-+.+.|||++...+++.+..|+...+...+++..+++++||.|+...+.++.+
T Consensus        60 iklqiwd--tagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~ye  137 (215)
T KOG0097|consen   60 IKLQIWD--TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYE  137 (215)
T ss_pred             EEEEEee--cccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHH
Confidence            3566676  99999999999999999999999999999999999999999999888899999999999999989999999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCcc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC  161 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (163)
                      ++..++++.|+-|+++||++|.+|++.|-+..+++.++.........+-..+.+-.+ +.++..+-++-...++-+|
T Consensus       138 eak~faeengl~fle~saktg~nvedafle~akkiyqniqdgsldlnaaesgvq~k~-~~p~~~~l~se~~~~kd~c  213 (215)
T KOG0097|consen  138 EAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDLNAAESGVQHKP-SQPSRTSLSSEATGAKDQC  213 (215)
T ss_pred             HHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCcccccchhccCcCCC-CCCCccccccCCCCccccC
Confidence            999999999999999999999999999999999999999888877665554443222 1112222233334456667

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=5.1e-27  Score=156.14  Aligned_cols=120  Identities=41%  Similarity=0.757  Sum_probs=110.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      +.+|+||  |+|||+|++....|+++||+++++||+.+..||+..+.|+.++.++....+.+.+++||+|+..++.+..+
T Consensus        47 vklqiwd--tagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~d  124 (192)
T KOG0083|consen   47 VKLQIWD--TAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRD  124 (192)
T ss_pred             EEEEEee--ccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccc
Confidence            3566666  99999999999999999999999999999999999999999999988778899999999999777899999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      +++.+++.+++||+++||++|.||+-.|-.|.+.+.++...-
T Consensus       125 dg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~~~  166 (192)
T KOG0083|consen  125 DGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKMGA  166 (192)
T ss_pred             hHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999888765443

>cd04111 Rab39 Rab39 subfamily

Probab=99.94  E-value=2.8e-25  Score=162.84  Aligned_cols=156  Identities=46%  Similarity=0.789  Sum_probs=127.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.+... ...|++||+||.|+.+.+.+..+
T Consensus        53 ~l~i~D--t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~  130 (211)
T cd04111          53 KLQLWD--TAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTRE  130 (211)
T ss_pred             EEEEEe--CCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHH
Confidence            455666  999999999999999999999999999999999999999999977654 35788999999999877778889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCC-CCCCCCCC-CCCcCCCccC
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRG-QGPSGARD-GTVSQRGGCC  162 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~  162 (163)
                      ++..+++.++++++++||+++.||+++|++|.+.+.+++..........-.+.+-+.... ..+.--++ ...++.+.||
T Consensus       131 ~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
T cd04111         131 EAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCC  210 (211)
T ss_pred             HHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCC
Confidence            999999999999999999999999999999999998887666545555544444443332 33333333 4567888999


Q ss_pred             C
Q 031249          163 S  163 (163)
Q Consensus       163 ~  163 (163)
                      |
T Consensus       211 ~  211 (211)
T cd04111         211 C  211 (211)
T ss_pred             C
Confidence            7

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.8e-26  Score=156.16  Aligned_cols=120  Identities=43%  Similarity=0.754  Sum_probs=109.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+||||  |+|+|+|+++...|++.||++|+|||++-..+|..+.+|+.++.++.+.++-.|+||||+|+.++++++...
T Consensus        57 klqiwd--tagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qi  134 (213)
T KOG0095|consen   57 KLQIWD--TAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQI  134 (213)
T ss_pred             EEEEee--ccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHH
Confidence            455555  999999999999999999999999999999999999999999999998888889999999998888999999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ++++.+....-|+++||+..+||+.+|..+...++.......
T Consensus       135 geefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar~~d  176 (213)
T KOG0095|consen  135 GEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQND  176 (213)
T ss_pred             HHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence            999999888889999999999999999999988876655443

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.94  E-value=1.3e-25  Score=156.70  Aligned_cols=118  Identities=34%  Similarity=0.642  Sum_probs=107.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCC--CC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAH--RR   79 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~--~~   79 (163)
                      -+||||  |||||||.++.-.+|++||++++|||+++++||+.+..|.+++.....    ...|+||+|||+|+..  .+
T Consensus        59 tlQiWD--TAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r  136 (210)
T KOG0394|consen   59 TLQIWD--TAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR  136 (210)
T ss_pred             EEEEEe--cccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc
Confidence            467788  999999999999999999999999999999999999999999977665    2489999999999865  27


Q ss_pred             ccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           80 AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        80 ~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      .++...+..||...| ++|||+|||...||++.|..+.+.++.....
T Consensus       137 ~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  137 QVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             eeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence            899999999998765 8999999999999999999999999988765

>cd04125 RabA_like RabA-like subfamily

Probab=99.94  E-value=8.3e-25  Score=157.38  Aligned_cols=120  Identities=38%  Similarity=0.674  Sum_probs=108.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|+++|..++..+++++|++|||||++++.+|..+..|+..+........|+++++||.|+.+.+.+..++
T Consensus        50 ~~~i~D--t~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~  127 (188)
T cd04125          50 KLQIWD--TNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNI  127 (188)
T ss_pred             EEEEEE--CCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHH
Confidence            456666  999999999999999999999999999999999999999999988765668999999999998777788888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      +..++...+++++++||+++.|++++|.+|++.+..+.....
T Consensus       128 ~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~  169 (188)
T cd04125         128 AKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE  169 (188)
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            888998889999999999999999999999999987665554

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.93  E-value=6.8e-25  Score=161.19  Aligned_cols=116  Identities=32%  Similarity=0.502  Sum_probs=104.6

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCcc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ..++|||  |+|++.|..++..+++++|++|||||++++.+|+.+..|+..+.+...   .+.|+++|+||+|+.+.+.+
T Consensus        50 ~~~~i~D--t~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v  127 (215)
T cd04109          50 VTLQVWD--IGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV  127 (215)
T ss_pred             EEEEEEE--CCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence            4566777  999999999999999999999999999999999999999999987643   34689999999999877778


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ..+++..+++.++++++++||++|.||+++|+++++.+...
T Consensus       128 ~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         128 KDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            88899999999999999999999999999999999998865

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04133 Rop_like Rop subfamily

Probab=99.93  E-value=2.6e-25  Score=158.74  Aligned_cols=112  Identities=30%  Similarity=0.603  Sum_probs=99.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCCC----
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRR----   79 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~----   79 (163)
                      ..++|||  |+|+++|..++..+++++|++|+|||++++.||+.+ ..|+..+.+.. ++.|++|||||+|+.+++    
T Consensus        49 v~l~i~D--t~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~  125 (176)
T cd04133          49 VNLGLWD--TAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLA  125 (176)
T ss_pred             EEEEEEE--CCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhh
Confidence            3455666  999999999999999999999999999999999998 67999997765 579999999999996542    


Q ss_pred             ------ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           80 ------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        80 ------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                            .+..+++..+++..+. .|+|+||+++.||+++|+.+++.+
T Consensus       126 ~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         126 DHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             hccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence                  4788999999999998 599999999999999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04122 Rab14 Rab14 subfamily

Probab=99.93  E-value=6.3e-25  Score=154.86  Aligned_cols=114  Identities=66%  Similarity=1.040  Sum_probs=103.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.....++.|+++|+||+|+.+.+.++.++
T Consensus        52 ~l~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~  129 (166)
T cd04122          52 KLQIWD--TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEE  129 (166)
T ss_pred             EEEEEE--CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHH
Confidence            345555  999999999999999999999999999999999999999999877665678999999999998877788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +..+++..+++++++||+++.||+++|.+++..+.+
T Consensus       130 ~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         130 AKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.93  E-value=5.2e-25  Score=158.01  Aligned_cols=111  Identities=28%  Similarity=0.549  Sum_probs=99.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH-------   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~-------   77 (163)
                      .++|||  |+|+++|..+++.+++++|++|+|||++++.||+.+ ..|++.+.+.. +..|++|||||.|+.+       
T Consensus        54 ~l~iwD--taG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~  130 (182)
T cd04172          54 ELSLWD--TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVE  130 (182)
T ss_pred             EEEEEE--CCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHH
Confidence            456666  999999999999999999999999999999999997 78999998866 5799999999999854       


Q ss_pred             -----CCccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHH
Q 031249           78 -----RRAVSKEEGEQFAKENGL-LFLEASARTAQN-VEEAFIKTAAKI  119 (163)
Q Consensus        78 -----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~lf~~l~~~~  119 (163)
                           .+.++.+++.++++..++ +|+|+||+++.| |+++|..+++.+
T Consensus       131 ~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         131 LSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             HHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence                 245889999999999996 899999999998 999999998854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04110 Rab35 Rab35 subfamily

Probab=99.93  E-value=1.8e-24  Score=157.20  Aligned_cols=118  Identities=37%  Similarity=0.675  Sum_probs=104.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... ...|++||+||+|+.+...+..++
T Consensus        56 ~l~l~D--~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~  132 (199)
T cd04110          56 KLQIWD--TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETED  132 (199)
T ss_pred             EEEEEe--CCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHH
Confidence            455666  99999999999999999999999999999999999999999987755 568999999999998766777888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      +..++...+.+++++||+++.||+++|++|.+.+.......
T Consensus       133 ~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~  173 (199)
T cd04110         133 AYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDN  173 (199)
T ss_pred             HHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhcc
Confidence            88899888999999999999999999999999997654433

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04112 Rab26 Rab26 subfamily

Probab=99.93  E-value=1.9e-24  Score=156.06  Aligned_cols=118  Identities=43%  Similarity=0.762  Sum_probs=105.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|+.+..|+..+.+....+.|+++|+||.|+..++.+..++
T Consensus        51 ~~~i~D--t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~  128 (191)
T cd04112          51 KLQIWD--TAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKRED  128 (191)
T ss_pred             EEEEEe--CCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHH
Confidence            455666  999999999999999999999999999999999999999999988765678999999999997667778888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      +..+++.++.+++++||+++.|++++|.+|++.+.....+
T Consensus       129 ~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~  168 (191)
T cd04112         129 GERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE  168 (191)
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence            8899999999999999999999999999999998766433

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=1.4e-24  Score=154.43  Aligned_cols=115  Identities=29%  Similarity=0.462  Sum_probs=103.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.||+.+..|+..+.+... +++|+++|+||+|+.+.+.++.+
T Consensus        51 ~l~i~D--t~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~  128 (172)
T cd04141          51 LLDILD--TAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE  128 (172)
T ss_pred             EEEEEe--CCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHH
Confidence            456666  999999999999999999999999999999999999999888876543 57999999999999777788889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ++..+++..+++++++||+++.||+++|++|++.+.+.
T Consensus       129 ~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~  166 (172)
T cd04141         129 EGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRK  166 (172)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999887763

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01875 RhoG RhoG subfamily

Probab=99.93  E-value=1.5e-24  Score=156.73  Aligned_cols=113  Identities=26%  Similarity=0.526  Sum_probs=99.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |+|+++|..+++.|++++|++|+|||++++.||+.+. .|+..+.+.. ++.|++|||||.|+.+.      
T Consensus        52 ~l~i~D--t~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~  128 (191)
T cd01875          52 SLNLWD--TAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKK  128 (191)
T ss_pred             EEEEEE--CCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHH
Confidence            456666  9999999999999999999999999999999999997 5888887654 57999999999999653      


Q ss_pred             ------CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                            +.+..+++..+++..+ .+++++||+++.||+++|+++++.+..
T Consensus       129 ~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         129 LKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence                  2367788999999988 589999999999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.92  E-value=5.2e-24  Score=157.04  Aligned_cols=117  Identities=26%  Similarity=0.513  Sum_probs=98.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .+.|||  |+|+++|..+++.+++++|++|+|||++++++|+.+. .|...+.... ++.|++|||||+|+.++      
T Consensus        50 ~L~iwD--t~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~  126 (222)
T cd04173          50 ELNMWD--TSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRE  126 (222)
T ss_pred             EEEEEe--CCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhh
Confidence            455666  9999999999999999999999999999999999985 5776665544 67999999999998542      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHHHHHHhh
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQN-VEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~lf~~l~~~~~~~~~~  125 (163)
                            ..+..+++..++++.+. +|+||||+++.+ |+++|..+....+.....
T Consensus       127 ~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         127 LSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             hhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCC
Confidence                  13677899999999995 899999999885 999999999987665443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04131 Rnd Rnd subfamily

Probab=99.92  E-value=2e-24  Score=154.51  Aligned_cols=112  Identities=30%  Similarity=0.560  Sum_probs=99.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH-------   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~-------   77 (163)
                      .++|||  |+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.+.. +..|++|||||.|+.+       
T Consensus        50 ~l~iwD--t~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~  126 (178)
T cd04131          50 ELSLWD--TSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLME  126 (178)
T ss_pred             EEEEEE--CCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHH
Confidence            455666  999999999999999999999999999999999996 78999998876 5789999999999854       


Q ss_pred             -----CCccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHHH
Q 031249           78 -----RRAVSKEEGEQFAKENGL-LFLEASARTAQN-VEEAFIKTAAKIL  120 (163)
Q Consensus        78 -----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~lf~~l~~~~~  120 (163)
                           .+.++.+++.++++..++ +|+|+||+++.+ |+++|..+++..+
T Consensus       127 ~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         127 LSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             HHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence                 235889999999999997 799999999995 9999999998644

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=99.92  E-value=3.2e-24  Score=152.98  Aligned_cols=116  Identities=36%  Similarity=0.664  Sum_probs=104.5

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..++|||  |+|+++|..++..+++++|++++|||++++++|..+..|+..+..... ++.|+++|+||+|+.+.+.+..
T Consensus        63 ~~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~  140 (180)
T cd04127          63 IHLQLWD--TAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE  140 (180)
T ss_pred             EEEEEEe--CCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH
Confidence            3456666  999999999999999999999999999999999999999999977543 4689999999999987777888


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +++..+++..+++++++||+++.|++++|++|++.+.++
T Consensus       141 ~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         141 EQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999999888754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PTZ00369 Ras-like protein; Provisional

Probab=99.92  E-value=6.7e-24  Score=152.91  Aligned_cols=120  Identities=37%  Similarity=0.587  Sum_probs=106.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++.++|+.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+
T Consensus        54 ~l~i~D--t~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~  131 (189)
T PTZ00369         54 LLDILD--TAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG  131 (189)
T ss_pred             EEEEEe--CCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence            456677  999999999999999999999999999999999999999999877643 46899999999999776677888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ++..+++.++.+++++||+++.||+++|.+|++.+.+...+..
T Consensus       132 ~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~~~  174 (189)
T PTZ00369        132 EGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDM  174 (189)
T ss_pred             HHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            8888888889999999999999999999999999887655553

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.92  E-value=1.4e-23  Score=150.70  Aligned_cols=118  Identities=31%  Similarity=0.546  Sum_probs=101.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC----Cc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR----RA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~----~~   80 (163)
                      .++|||  |||+++|..++..+++++|++|||||+++..||+.+. .|+..+.... ++.|+++|+||.|+...    +.
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  126 (187)
T cd04132          50 ELALWD--TAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRK  126 (187)
T ss_pred             EEEEEE--CCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCC
Confidence            456666  9999999999999999999999999999999999986 4888776544 56899999999998553    24


Q ss_pred             cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           81 VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        81 v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      +..+++..++..++. +++++||+++.||+++|..+++.+.....+.
T Consensus       127 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~  173 (187)
T cd04132         127 VTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKA  173 (187)
T ss_pred             cCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            667889999999998 8999999999999999999999988766554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=99.92  E-value=1.3e-23  Score=147.74  Aligned_cols=111  Identities=38%  Similarity=0.723  Sum_probs=101.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..+++++|++++|||++++.||+.+..|++.+........|+++|+||.|+.+.+.+..++
T Consensus        50 ~l~i~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~  127 (161)
T cd04117          50 RIQIWD--TAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQ  127 (161)
T ss_pred             EEEEEe--CCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHH
Confidence            456666  999999999999999999999999999999999999999999987665579999999999998777788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      +..+++..+.+++++||+++.||+++|.+|++.
T Consensus       128 ~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         128 GNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.92  E-value=1.7e-23  Score=147.81  Aligned_cols=114  Identities=50%  Similarity=0.880  Sum_probs=104.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||+++.++|..+..|+..+.+....+.|+++|+||.|+.+.+.+..++
T Consensus        53 ~l~l~D--~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~  130 (167)
T cd01867          53 KLQIWD--TAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEE  130 (167)
T ss_pred             EEEEEe--CCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHH
Confidence            566777  999999999999999999999999999999999999999999987665679999999999998777778888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +..++..++.+++++||+++.||+++|+++++.+..
T Consensus       131 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         131 GEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            889999999999999999999999999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01865 Rab3 Rab3 subfamily

Probab=99.92  E-value=2e-23  Score=147.18  Aligned_cols=114  Identities=42%  Similarity=0.737  Sum_probs=103.4

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+++||  |+|+++|..++..+++++|++++|||+++..+|+.+..|++.+.+......|+++|+||+|+.+.+.+..+
T Consensus        50 ~~~~l~D--t~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~  127 (165)
T cd01865          50 VKLQIWD--TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSE  127 (165)
T ss_pred             EEEEEEE--CCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHH
Confidence            4567777  99999999999999999999999999999999999999999998776567899999999999877777788


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ++..+++..+++++++||+++.|++++|++++..+.
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         128 RGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            888899989999999999999999999999988654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.91  E-value=1.2e-23  Score=152.48  Aligned_cols=108  Identities=25%  Similarity=0.437  Sum_probs=94.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~-------   77 (163)
                      .++|||  |||+++  .+...+++++|++|+|||++++.||+.+. .|+..+.... ++.|++|||||+|+..       
T Consensus        67 ~l~iwD--TaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~  141 (195)
T cd01873          67 SLRLWD--TFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVN  141 (195)
T ss_pred             EEEEEe--CCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhh
Confidence            455555  999986  35677999999999999999999999997 5999887765 5789999999999853       


Q ss_pred             ------------CCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           78 ------------RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        78 ------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                                  .+.++.+++..+++.++++|+|+||+++.||+++|+.+++.
T Consensus       142 ~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         142 RARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             hcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                        36788999999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.91  E-value=2.1e-23  Score=146.21  Aligned_cols=114  Identities=39%  Similarity=0.712  Sum_probs=106.2

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  ++|+++|..++..+++++|++|+|||+++++||+.+..|++.+....+.+.|++|+|||.|+.+.++++.+
T Consensus        48 ~~l~i~D--~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~  125 (162)
T PF00071_consen   48 VNLEIWD--TSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVE  125 (162)
T ss_dssp             EEEEEEE--ETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHH
T ss_pred             ccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhh
Confidence            3566776  89999999999999999999999999999999999999999999988657999999999999877889999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ++..+++.++.+|+++||+++.+|.++|..+++.+.
T Consensus       126 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  126 EAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.91  E-value=1.3e-23  Score=149.75  Aligned_cols=111  Identities=22%  Similarity=0.465  Sum_probs=96.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |+|+++|..++..+++++|++|||||++++++|+.+. .|+..+.... ++.|++||+||+|+...      
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~  126 (175)
T cd01874          50 TLGLFD--TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEK  126 (175)
T ss_pred             EEEEEE--CCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHH
Confidence            455666  9999999999999999999999999999999999997 4888887654 56899999999998543      


Q ss_pred             ------CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                            +.+..+++..+++..+ ..|+++||++|.|++++|+.++...
T Consensus       127 l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         127 LAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             hhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence                  4577888999998887 6899999999999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04175 Rap1 Rap1 subgroup

Probab=99.91  E-value=1.8e-23  Score=147.05  Aligned_cols=113  Identities=36%  Similarity=0.582  Sum_probs=100.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |+|+++|..++..+++++|++++|||+++..+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  127 (164)
T cd04175          50 MLEILD--TAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE  127 (164)
T ss_pred             EEEEEE--CCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHH
Confidence            344565  999999999999999999999999999999999999999999876543 57999999999999776677777


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ++..+++..+++++++||+++.|++++|.++.+.+.
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         128 QGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             HHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence            888888888999999999999999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04136 Rap_like Rap-like subfamily

Probab=99.91  E-value=2e-23  Score=146.27  Aligned_cols=112  Identities=37%  Similarity=0.597  Sum_probs=99.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |||+++|..++..+++++|++++|||+++..+|+.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  127 (163)
T cd04136          50 MLEILD--TAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSRE  127 (163)
T ss_pred             EEEEEE--CCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHH
Confidence            345666  999999999999999999999999999999999999999999977543 56899999999999776677777


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++..+++.++.+++++||+++.|+.++|+++++.+
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         128 EGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            88888888888999999999999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.91  E-value=2.6e-23  Score=146.42  Aligned_cols=113  Identities=49%  Similarity=0.862  Sum_probs=103.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||++++++|..+..|+..+.....++.|+++++||.|+.+.+.+..++
T Consensus        52 ~~~i~D--~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~  129 (166)
T cd01869          52 KLQIWD--TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSE  129 (166)
T ss_pred             EEEEEE--CCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHH
Confidence            567777  999999999999999999999999999999999999999999987665678999999999997777788889


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +..+++..+++++++||+++.|++++|.++.+.+.
T Consensus       130 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         130 AQEFADELGIPFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             HHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=2.8e-23  Score=151.01  Aligned_cols=113  Identities=29%  Similarity=0.566  Sum_probs=98.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |+|+++|..++..|++++|++|+|||+++..||..+..|+.++.+.. .++|++|||||+|+.. +.+..+
T Consensus        44 ~~l~iwD--t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~  119 (200)
T smart00176       44 IRFNVWD--TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAK  119 (200)
T ss_pred             EEEEEEE--CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHH
Confidence            4566676  99999999999999999999999999999999999999999998765 5799999999999854 445544


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      . ..+++..++.|+++||+++.||.++|++|++.+.+.
T Consensus       120 ~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      120 S-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             H-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            4 467788889999999999999999999999988654

Ran is involved in the active transport of proteins through nuclear pores.

>PLN03118 Rab family protein; Provisional

Probab=99.91  E-value=8.1e-23  Score=149.68  Aligned_cols=120  Identities=48%  Similarity=0.688  Sum_probs=100.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH-HHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      +..+.++.|||||+++|..++..+++++|++|+|||+++.++|..+.. |...+..... .+.|+++|+||.|+...+.+
T Consensus        59 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i  138 (211)
T PLN03118         59 GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV  138 (211)
T ss_pred             CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc
Confidence            334444444499999999999999999999999999999999999976 5555544332 45799999999999876777


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ..++...++...++.++++||+++.|++++|++|...+.+..
T Consensus       139 ~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        139 SREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            788888888888999999999999999999999999987653

>cd04118 Rab24 Rab24 subfamily

Probab=99.91  E-value=1.4e-22  Score=146.20  Aligned_cols=115  Identities=32%  Similarity=0.581  Sum_probs=99.7

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC----CccC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVS   82 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~----~~v~   82 (163)
                      ++|||  |+|+++|..++..+++++|++++|||+++..+|+.+..|++.+.... ++.|+++|+||.|+.+.    +.+.
T Consensus        52 l~i~D--~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~  128 (193)
T cd04118          52 LGIWD--TAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVD  128 (193)
T ss_pred             EEEEE--CCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccC
Confidence            34565  99999999999999999999999999999999999999999987754 56899999999998542    3455


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      .+++..++..++.+++++||+++.|++++|+++.+.+.+...
T Consensus       129 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  170 (193)
T cd04118         129 FHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            677788888888999999999999999999999999976553

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.91  E-value=4.2e-23  Score=149.43  Aligned_cols=123  Identities=36%  Similarity=0.527  Sum_probs=112.4

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCc
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~   80 (163)
                      +.+..+.+..+||+|++.|..|...|++++|+|++||++++..||+.+..+++.+.+... ..+|+++||||+|+...+.
T Consensus        46 v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~  125 (196)
T KOG0395|consen   46 VDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQ  125 (196)
T ss_pred             ECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccc
Confidence            356788888999999999999999999999999999999999999999999999955443 4589999999999988899


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      ++.+++..++..++++|+|+||+.+.+|+++|..|++.+.....
T Consensus       126 V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~  169 (196)
T KOG0395|consen  126 VSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE  169 (196)
T ss_pred             cCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999888333

>cd04128 Spg1 Spg1p

Probab=99.90  E-value=5.9e-23  Score=147.37  Aligned_cols=113  Identities=25%  Similarity=0.426  Sum_probs=96.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC-----CCc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-----RRA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~-----~~~   80 (163)
                      .++|||  |+|+++|..++..+++++|++++|||++++.+|..+..|+..+.+......| ++|+||+|+..     .+.
T Consensus        50 ~l~iwD--t~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~  126 (182)
T cd04128          50 TFSIWD--LGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQE  126 (182)
T ss_pred             EEEEEe--CCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhh
Confidence            456666  9999999999999999999999999999999999999999999876544567 68899999842     111


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ...+++..+++..+.+++++||+++.||+++|+++++.+.+
T Consensus       127 ~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         127 EITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             hhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            22456778888889999999999999999999999988865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04176 Rap2 Rap2 subgroup

Probab=99.90  E-value=4.8e-23  Score=144.61  Aligned_cols=112  Identities=30%  Similarity=0.500  Sum_probs=99.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |+|+++|..++..+++++|++++|||+++..+|..+..|+..+.+... .++|+++|+||+|+.+.+.+...
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~  127 (163)
T cd04176          50 VLEILD--TAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSA  127 (163)
T ss_pred             EEEEEE--CCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHH
Confidence            356677  999999999999999999999999999999999999999999977543 57999999999999766667777


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++..++..++.+++++||+++.|+.++|.++++++
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         128 EGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             HHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            78888888888999999999999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.90  E-value=5.7e-23  Score=146.38  Aligned_cols=110  Identities=28%  Similarity=0.519  Sum_probs=96.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |+|+++|..++..+++++|++|||||+++++||..+. .|+..+.... ++.|++||+||.|+.+.      
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~  126 (174)
T cd01871          50 NLGLWD--TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEK  126 (174)
T ss_pred             EEEEEE--CCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHH
Confidence            455666  9999999999999999999999999999999999986 5888887654 57999999999998542      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                            +.++.+++..+++.++. +++++||+++.||+++|+.+++.
T Consensus       127 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         127 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             HhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence                  24788899999999984 89999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01866 Rab2 Rab2 subfamily

Probab=99.90  E-value=1.5e-22  Score=143.04  Aligned_cols=115  Identities=76%  Similarity=1.157  Sum_probs=104.4

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.|||  |+|+++|..++..+++.+|+++||||++++.+|..+..|+..+.+...++.|+++|+||.|+.+.+.+..+
T Consensus        53 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~  130 (168)
T cd01866          53 IKLQIWD--TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYE  130 (168)
T ss_pred             EEEEEEE--CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHH
Confidence            3566777  99999999999999999999999999999999999999999998876577999999999999866678888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ++..++...++.++++||+++.|++++|.++.+.+.+
T Consensus       131 ~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         131 EGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            8888999899999999999999999999999888754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.90  E-value=1.6e-22  Score=141.89  Aligned_cols=113  Identities=34%  Similarity=0.666  Sum_probs=101.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-----CCCeEEEEeeCCCCCCCCc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-----PNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~D~~~~~~   80 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.+...     ...|+++|+||+|+.+++.
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  127 (168)
T cd04119          50 RVNFFD--LSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA  127 (168)
T ss_pred             EEEEEE--CCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccc
Confidence            455666  999999999999999999999999999999999999999999987653     3689999999999976566


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +..++...++...+++++++||+++.|++++|++|++.+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         128 VSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            7888888899888999999999999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04134 Rho3 Rho3 subfamily

Probab=99.90  E-value=8.3e-23  Score=147.27  Aligned_cols=113  Identities=34%  Similarity=0.601  Sum_probs=97.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC----
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR----   79 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~----   79 (163)
                      ..++|||  |+|+++|..++..+++++|++|+|||+++..+|+.+. .|+..+.... ++.|++||+||+|+.+.+    
T Consensus        48 ~~l~i~D--t~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~  124 (189)
T cd04134          48 IELSLWD--TAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERD  124 (189)
T ss_pred             EEEEEEE--CCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHH
Confidence            3466666  9999999999999999999999999999999999886 5898887754 579999999999986543    


Q ss_pred             --------ccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           80 --------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        80 --------~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                              .+..+++..+++..+ ++|+++||+++.||+++|.++++.+.
T Consensus       125 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         125 DLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence                    355677788888777 68999999999999999999998886

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.90  E-value=2.6e-22  Score=141.07  Aligned_cols=112  Identities=54%  Similarity=0.920  Sum_probs=102.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |||+++|..++..++++++++|+|||+++..+|..+..|+..+.+....+.|+++|+||.|+.+.+.+..++
T Consensus        53 ~~~l~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~  130 (165)
T cd01868          53 KAQIWD--TAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEE  130 (165)
T ss_pred             EEEEEe--CCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHH
Confidence            567777  999999999999999999999999999999999999999999988765568999999999998777778888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ...++...+++++++||+++.|++++|++++..+
T Consensus       131 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         131 AKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            8889888889999999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.90  E-value=2.3e-22  Score=140.78  Aligned_cols=111  Identities=36%  Similarity=0.621  Sum_probs=100.0

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |||+++|..++..+++++|++++|||++++++|..+..|+..+.+.. .+.|+++|+||.|+..+..+..+
T Consensus        51 ~~~~i~D--~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~  127 (162)
T cd04106          51 VRLMLWD--TAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNE  127 (162)
T ss_pred             EEEEEee--CCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHH
Confidence            3566666  99999999999999999999999999999999999999999987654 56999999999999777778888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ++..+++..+++++++||+++.|++++|++|...
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         128 EAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            8999999999999999999999999999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.90  E-value=1.5e-22  Score=149.24  Aligned_cols=113  Identities=30%  Similarity=0.586  Sum_probs=98.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |+|+++|..++..|++++|++|+|||+++..+|..+..|+..+.+.. .+.|++|||||+|+.+ +.+..+
T Consensus        62 ~~l~i~D--t~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~  137 (219)
T PLN03071         62 IRFYCWD--TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK  137 (219)
T ss_pred             EEEEEEE--CCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHH
Confidence            3566666  99999999999999999999999999999999999999999998765 5799999999999854 345555


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ++ .+++..+++|+++||+++.||+++|++|++.+.+.
T Consensus       138 ~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        138 QV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             HH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            55 67777889999999999999999999999988654

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.89  E-value=3e-22  Score=140.58  Aligned_cols=113  Identities=40%  Similarity=0.626  Sum_probs=100.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+++||  |||+++|..++..+++++|++++|||+++.++|+.+..|+..+.+... .+.|+++|+||+|+...+.+..+
T Consensus        49 ~l~i~D--t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~  126 (164)
T smart00173       49 LLDILD--TAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTE  126 (164)
T ss_pred             EEEEEE--CCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHH
Confidence            455666  999999999999999999999999999999999999999988876543 46899999999999776667778


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ++..+++..+.+++++||+++.|++++|++|++.+.
T Consensus       127 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      127 EGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             HHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            888888888999999999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.89  E-value=1.5e-22  Score=143.52  Aligned_cols=112  Identities=31%  Similarity=0.558  Sum_probs=98.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC-----
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR-----   79 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~-----   79 (163)
                      .+++||  |+|+++|..++..+++++|++|+|||+++.+||+.+. .|+..+.+.. ++.|++||+||+|+....     
T Consensus        47 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~  123 (174)
T smart00174       47 ELGLWD--TAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRE  123 (174)
T ss_pred             EEEEEE--CCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhh
Confidence            466666  9999999999999999999999999999999999986 5999887765 579999999999986522     


Q ss_pred             -------ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           80 -------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        80 -------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                             .++.+++..+++..+. .++++||+++.||+++|+.+++.+.
T Consensus       124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      124 LSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             hhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence                   3777888899999986 8999999999999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.89  E-value=2.5e-22  Score=140.75  Aligned_cols=112  Identities=33%  Similarity=0.563  Sum_probs=99.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+++||  |||+++|..++..+++++|++++|||+++..+|..+..|+..+.+... .+.|+++++||+|+...+.+..+
T Consensus        51 ~~~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~  128 (164)
T cd04145          51 ILDILD--TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSRE  128 (164)
T ss_pred             EEEEEE--CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHH
Confidence            456676  999999999999999999999999999999999999999999876532 56899999999999776667778


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++..+++..+++++++||+++.||+++|+++++.+
T Consensus       129 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         129 EGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             HHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            88888888889999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04113 Rab4 Rab4 subfamily

Probab=99.89  E-value=3.3e-22  Score=140.04  Aligned_cols=112  Identities=62%  Similarity=0.959  Sum_probs=102.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |+|+++|..++..+++++|++|+|||+++..+|..+..|+..+.....++.|++|++||.|+.+.+.+..+
T Consensus        49 ~~l~l~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~  126 (161)
T cd04113          49 VKLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFL  126 (161)
T ss_pred             EEEEEEE--CcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHH
Confidence            3567777  99999999999999999999999999999999999999999988776678999999999999777778888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ++..++...+..++++||+++.|++++|+++++.
T Consensus       127 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         127 EASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04140 ARHI_like ARHI subfamily

Probab=99.89  E-value=2.1e-22  Score=141.87  Aligned_cols=110  Identities=32%  Similarity=0.472  Sum_probs=97.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .+++||  |+|+++|..++..+++.+|++|+|||+++.++|+.+..|++.+.+...   ++.|+++|+||+|+.+.+++.
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~  127 (165)
T cd04140          50 TLQITD--TTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVS  127 (165)
T ss_pred             EEEEEE--CCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeec
Confidence            456666  999999999999999999999999999999999999999888866432   568999999999997766777


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      .+++..++..++++++++||+++.|++++|++|+.
T Consensus       128 ~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         128 SNEGAACATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             HHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence            88888888888999999999999999999999975

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01864 Rab19 Rab19 subfamily

Probab=99.89  E-value=5.3e-22  Score=139.71  Aligned_cols=111  Identities=47%  Similarity=0.835  Sum_probs=100.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++++|||++++.+|..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        53 ~l~i~D--~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  130 (165)
T cd01864          53 KLQIWD--TAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEE  130 (165)
T ss_pred             EEEEEE--CCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHH
Confidence            566777  999999999999999999999999999999999999999999987655679999999999998777777888


Q ss_pred             HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q 031249           86 GEQFAKENGL-LFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        86 ~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      +..+++..+. .++++||+++.|++++|+++.+.
T Consensus       131 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         131 ACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             HHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            8889988886 58999999999999999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.89  E-value=7.7e-22  Score=140.02  Aligned_cols=114  Identities=32%  Similarity=0.594  Sum_probs=97.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCc--cC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA--VS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~--v~   82 (163)
                      .++|||  |+|+++|..++..+++++|++++|||++++++|..+..|+..+.+... ...|+++|+||.|+.+...  +.
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~  127 (170)
T cd04108          50 SLQLWD--TAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALM  127 (170)
T ss_pred             EEEEEe--CCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccccc
Confidence            456666  999999999999999999999999999999999999999999866543 3478999999999855333  34


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .+++..++..++.+++++||+++.|++++|+.|.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         128 EQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            566778888888899999999999999999999888754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.89  E-value=6.4e-22  Score=139.84  Aligned_cols=112  Identities=32%  Similarity=0.598  Sum_probs=97.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+++||  |+|++++..++..+++.+|++|+|||+++..+|..+..|+..+..... ++|+++|+||+|+.+ +.+. .
T Consensus        49 ~~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~  123 (166)
T cd00877          49 IRFNVWD--TAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-A  123 (166)
T ss_pred             EEEEEEE--CCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-H
Confidence            3556666  999999999999999999999999999999999999999999988763 799999999999964 3343 3


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +...+++..+++++++||+++.||+++|++|.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         124 KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            4456777778899999999999999999999988864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.89  E-value=9.2e-22  Score=138.10  Aligned_cols=112  Identities=32%  Similarity=0.571  Sum_probs=99.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+++||  |+|++++..++..+++++|++++|||+++..+|..+..|++.+.+.. ...|+++|+||.|+.+..++...
T Consensus        52 ~~l~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~  128 (164)
T cd04101          52 VELFIFD--SAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDA  128 (164)
T ss_pred             EEEEEEE--CCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHH
Confidence            3455666  99999999999999999999999999999999999999999988765 56899999999999776677777


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++..+....+.+++++||+++.|++++|+.+.+.+
T Consensus       129 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         129 QAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            77778888888999999999999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04116 Rab9 Rab9 subfamily

Probab=99.88  E-value=1.3e-21  Score=138.30  Aligned_cols=110  Identities=35%  Similarity=0.649  Sum_probs=97.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .++|||  |+|+++|..++..+++++|++++|||+++..+|+.+..|+..+.....    .+.|+++|+||.|+. .+.+
T Consensus        55 ~l~i~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~  131 (170)
T cd04116          55 TLQIWD--TAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQV  131 (170)
T ss_pred             EEEEEe--CCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-cccc
Confidence            456666  999999999999999999999999999999999999999998866442    458999999999986 4567


Q ss_pred             CHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..+++.++++.++. +++++||+++.|+.++|.++++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         132 STEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             CHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            78889999988884 79999999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=99.88  E-value=1.1e-21  Score=137.80  Aligned_cols=111  Identities=33%  Similarity=0.574  Sum_probs=95.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.+.. ++.|+++|+||.|+..  .. .++
T Consensus        50 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~--~~-~~~  123 (161)
T cd04124          50 LVDFWD--TAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDP--SV-TQK  123 (161)
T ss_pred             EEEEEe--CCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCch--hH-HHH
Confidence            455666  99999999999999999999999999999999999999999997754 5689999999999843  12 344


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ...++...+++++++||+++.|++++|+.+++.+.++
T Consensus       124 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         124 KFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            5566777788999999999999999999999888765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.88  E-value=1.2e-21  Score=136.64  Aligned_cols=111  Identities=36%  Similarity=0.628  Sum_probs=98.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+++||  |+|+++|..++..|++++|++++|||+++..+|+.+..|+..+.+... .+.|+++|+||+|+.+ +.+...
T Consensus        50 ~~~i~D--t~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~  126 (162)
T cd04138          50 LLDILD--TAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSR  126 (162)
T ss_pred             EEEEEE--CCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHH
Confidence            356677  999999999999999999999999999999999999999999877643 5689999999999865 456677


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++..+++..+.+++++||+++.|++++|+++++.+
T Consensus       127 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         127 QGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             HHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            88888888899999999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.88  E-value=2e-21  Score=136.02  Aligned_cols=115  Identities=60%  Similarity=0.946  Sum_probs=104.0

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+++||  |+|+++|..++..+++.+|++|+|||++++.+++.+..|+..+.....+..|+++++||+|+....++..+
T Consensus        49 ~~~~l~D--~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~  126 (164)
T smart00175       49 VKLQIWD--TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSRE  126 (164)
T ss_pred             EEEEEEE--CCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHH
Confidence            3566777  99999999999999999999999999999999999999999998876567999999999998766677888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .+..+++..+++++++|++++.|++++|+++.+.+.+
T Consensus       127 ~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      127 EAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            8888999899999999999999999999999988754

Rab GTPases are implicated in vesicle trafficking.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.88  E-value=1.7e-21  Score=137.94  Aligned_cols=113  Identities=36%  Similarity=0.701  Sum_probs=100.5

Q ss_pred             ceeeEeeecccchhhhh-hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            5 QESFFWSLLQAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~-~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      ..++|||  |+|+++|. .++..+++++|++++|||++++.+|..+..|+..+..... .++|+++|+||.|+.+.+.+.
T Consensus        51 ~~~~i~D--t~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  128 (170)
T cd04115          51 IKVQLWD--TAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVP  128 (170)
T ss_pred             EEEEEEe--CCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCC
Confidence            3566666  99999997 5889999999999999999999999999999999977643 569999999999998777788


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCC---CCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASART---AQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~lf~~l~~~~  119 (163)
                      .+++..+++..+++++++||++   +.+++++|..+++.+
T Consensus       129 ~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         129 TDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            8888899999999999999999   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04177 RSR1 RSR1 subgroup

Probab=99.88  E-value=1.7e-21  Score=137.63  Aligned_cols=114  Identities=34%  Similarity=0.566  Sum_probs=101.5

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..+++||  |+|+++|..+++.+++++|++++|||++++++|+.+..|...+.+... .+.|+++++||.|+.+.+.+..
T Consensus        49 ~~~~i~D--t~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~  126 (168)
T cd04177          49 CDLEILD--TAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR  126 (168)
T ss_pred             EEEEEEe--CCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCH
Confidence            3567777  999999999999999999999999999999999999999999876433 5799999999999977677777


Q ss_pred             HHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +++..+++.++ ++++++||+++.||+++|.+++.+++
T Consensus       127 ~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         127 EDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             HHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            88888888888 78999999999999999999998765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.88  E-value=3e-21  Score=135.23  Aligned_cols=113  Identities=50%  Similarity=0.854  Sum_probs=102.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |||++++..++..+++++|++|||||++++++|..+..|+..+.....+..|+++++||+|+...+.++.+
T Consensus        50 ~~~~i~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~  127 (163)
T cd01860          50 VKFEIWD--TAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTE  127 (163)
T ss_pred             EEEEEEe--CCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHH
Confidence            3566776  99999999999999999999999999999999999999999998776567999999999999766677888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +...++...++.++++||+++.|+.++|++|++.+
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         128 EAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            88889998899999999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.88  E-value=2.7e-21  Score=144.83  Aligned_cols=138  Identities=20%  Similarity=0.294  Sum_probs=106.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh---------cCCCCeEEEEeeCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---------ANPNMSIMLVGNKCD   74 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ilv~nK~D   74 (163)
                      +..++|..|||+|+++|..++..++.++|++|+|||+++.+||+.+..|++++.+.         ...++|++||+||+|
T Consensus        45 ~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~D  124 (247)
T cd04143          45 GEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKAD  124 (247)
T ss_pred             CEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECcc
Confidence            43444444449999999999999999999999999999999999999999998654         224689999999999


Q ss_pred             CCCCCccCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCC
Q 031249           75 LAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGR  143 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (163)
                      +.+.+++..+++..++.. .++.++++||+++.||+++|++|+....  .........+...++..+...
T Consensus       125 l~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~--~p~e~~~~~~~~~~~~~~~~~  192 (247)
T cd04143         125 RDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK--LPNEMSPSLHRKISVQYGDAL  192 (247)
T ss_pred             chhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc--cccccCccccceeeeeecccc
Confidence            976667788888877654 4678999999999999999999998653  222223444455555555543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.88  E-value=1.8e-21  Score=137.04  Aligned_cols=113  Identities=35%  Similarity=0.491  Sum_probs=98.0

Q ss_pred             eeeEeeecccchhhh-hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCCCCccC
Q 031249            6 ESFFWSLLQAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~-~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .++|||  |+|++++ ...+..+++++|++|+|||++++.+|+.+..|+..+....  ..+.|+++|+||+|+.+.+.+.
T Consensus        48 ~~~i~D--~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~  125 (165)
T cd04146          48 SLEILD--TAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS  125 (165)
T ss_pred             EEEEEE--CCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC
Confidence            356666  9999863 5567889999999999999999999999999999887754  2469999999999987667788


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCC-CCHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTA-QNVEEAFIKTAAKIL  120 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~lf~~l~~~~~  120 (163)
                      .+++..+++..+.+++++||+++ .||+++|+.+++.+.
T Consensus       126 ~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         126 TEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            88889999999999999999999 599999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01861 Rab6 Rab6 subfamily

Probab=99.88  E-value=3.2e-21  Score=134.82  Aligned_cols=111  Identities=45%  Similarity=0.754  Sum_probs=100.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |||++++..++..+++++|++++|||++++.+|+.+..|+..+......+.|+++++||+|+.+.+.+..++
T Consensus        50 ~l~~~D--~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~  127 (161)
T cd01861          50 RLQLWD--TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEE  127 (161)
T ss_pred             EEEEEE--CCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHH
Confidence            466777  999999999999999999999999999999999999999999977665569999999999997667778888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ...+++..+.+++++||+++.|++++|+++.+.
T Consensus       128 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         128 GEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             HHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            888888889999999999999999999999764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.87  E-value=2.5e-21  Score=137.46  Aligned_cols=109  Identities=28%  Similarity=0.521  Sum_probs=94.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~-------   77 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.+|+.+. .|+..+.... ++.|+++++||.|+.+       
T Consensus        49 ~~~i~D--t~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  125 (173)
T cd04130          49 RLQLCD--TAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQ  125 (173)
T ss_pred             EEEEEE--CCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHH
Confidence            455666  9999999999999999999999999999999999985 6888887643 5689999999999853       


Q ss_pred             -----CCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHH
Q 031249           78 -----RRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        78 -----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                           .+.+..+++..+++..+. .++++||+++.||+++|+.++-
T Consensus       126 ~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         126 LARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             HhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence                 346778889999999888 7999999999999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04123 Rab21 Rab21 subfamily

Probab=99.87  E-value=4.9e-21  Score=133.62  Aligned_cols=112  Identities=40%  Similarity=0.752  Sum_probs=101.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.+||  |+|++++..+++.+++++|++++|||+++..+++.+..|++.+.+....++|+++++||+|+...+.+..++
T Consensus        50 ~~~~~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~  127 (162)
T cd04123          50 DLAIWD--TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSE  127 (162)
T ss_pred             EEEEEE--CCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHH
Confidence            466777  999999999999999999999999999999999999999999988776679999999999998766777788


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +..+++..+.+++++|++++.|++++|+++.+.+
T Consensus       128 ~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         128 AEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            8888888999999999999999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.87  E-value=2.6e-21  Score=135.86  Aligned_cols=106  Identities=16%  Similarity=0.319  Sum_probs=91.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC--CCCccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~--~~~~v~   82 (163)
                      .++|||  |+|++.     ..+++++|++++|||++++.||+.+..|+..+..... +..|+++||||.|+.  ..+.+.
T Consensus        48 ~l~i~D--~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~  120 (158)
T cd04103          48 LLLIRD--EGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVID  120 (158)
T ss_pred             EEEEEE--CCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccC
Confidence            466677  999976     4577899999999999999999999999999987654 568999999999984  246788


Q ss_pred             HHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           83 KEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        83 ~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .+++.++++.. ++.|++|||+++.||+++|..+++.
T Consensus       121 ~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         121 DARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             HHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            88888898876 4899999999999999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.86  E-value=5.5e-21  Score=137.00  Aligned_cols=114  Identities=17%  Similarity=0.249  Sum_probs=89.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..++|||  |||+++|..+|..+++++|++|||||+++.+++..+..++..+.... .+++|++|++||+|++..  ..
T Consensus        60 ~~~~~i~D--~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~  135 (181)
T PLN00223         60 NISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MN  135 (181)
T ss_pred             CEEEEEEE--CCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CC
Confidence            45678888  99999999999999999999999999999999998888777764422 246899999999998653  34


Q ss_pred             HHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENG-----LLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .++....+.-..     +.++++||++|+||.++|++|.+.+..
T Consensus       136 ~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            444333332111     235689999999999999999887654

>cd04149 Arf6 Arf6 subfamily

Probab=99.86  E-value=3.2e-21  Score=136.60  Aligned_cols=110  Identities=19%  Similarity=0.300  Sum_probs=90.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..++|||  |+|+++|..+|..+++++|++|||||++++.+|..+..|+..+.... ..++|++||+||+|+.+  .+.
T Consensus        52 ~~~~~l~D--t~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~  127 (168)
T cd04149          52 NVKFNVWD--VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMK  127 (168)
T ss_pred             CEEEEEEE--CCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCC
Confidence            45678888  99999999999999999999999999999999999888887775432 25689999999999854  356


Q ss_pred             HHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFAKE-----NGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      .+++..++..     ...+++++||++|.||+++|++|.+
T Consensus       128 ~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         128 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            6776665432     2246899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.86  E-value=7.4e-22  Score=137.54  Aligned_cols=132  Identities=29%  Similarity=0.469  Sum_probs=116.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      .+..++||  |+|++.|+.+...||++|.+.++||+-+|..||+++..|++.+.... ..+|.++|-||+|+.++..+..
T Consensus        68 dvr~mlWd--tagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~  144 (246)
T KOG4252|consen   68 DVRSMLWD--TAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDK  144 (246)
T ss_pred             HHHHHHHH--hccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcch
Confidence            34567788  99999999999999999999999999999999999999999998876 5699999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc-ccccccCCCCce
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG-ALDAVNDQSGIK  138 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~-~~~~~~~~~~~~  138 (163)
                      .+++.+++.....++.+|++...||..+|..|.+.+.+.+... ....++..++.+
T Consensus       145 ~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn  200 (246)
T KOG4252|consen  145 GEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSN  200 (246)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCC
Confidence            9999999999999999999999999999999999999887763 333344443333

>cd04148 RGK RGK subfamily

Probab=99.86  E-value=1.9e-20  Score=138.22  Aligned_cols=118  Identities=28%  Similarity=0.314  Sum_probs=99.8

Q ss_pred             eeeEeeecccchhhhhhchhhhcc-CCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYR-GAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~-~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      .+.|||  |+|++.  .+...+++ ++|++++|||+++..+|+.+..|+..+.+... .++|+++|+||+|+.+.+.+..
T Consensus        51 ~l~i~D--t~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~  126 (221)
T cd04148          51 TLVVID--HWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV  126 (221)
T ss_pred             EEEEEe--CCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH
Confidence            455666  999983  34455677 99999999999999999999999999877543 4699999999999977777888


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      +++..++..++++++++||+++.||+++|+++++.+.......+
T Consensus       127 ~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~  170 (221)
T cd04148         127 QEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE  170 (221)
T ss_pred             HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence            88888988889999999999999999999999999976555544

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04158 ARD1 ARD1 subfamily

Probab=99.86  E-value=9.8e-21  Score=134.05  Aligned_cols=115  Identities=18%  Similarity=0.287  Sum_probs=95.0

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+++||  |||++++..+|..+++++|+++||||++++.+|..+..|+..+.+... .+.|++|++||+|+.+  .++
T Consensus        42 ~~~i~l~D--t~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~  117 (169)
T cd04158          42 NLKFTIWD--VGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALS  117 (169)
T ss_pred             CEEEEEEE--CCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCC
Confidence            45677777  999999999999999999999999999999999999999888865432 4589999999999854  366


Q ss_pred             HHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENG------LLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        83 ~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      .+++..++...+      +.++++||+++.||+++|++|.+.+...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         118 VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence            777776664332      2588999999999999999998776543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04142 RRP22 RRP22 subfamily

Probab=99.85  E-value=1.7e-20  Score=136.26  Aligned_cols=118  Identities=17%  Similarity=0.184  Sum_probs=95.7

Q ss_pred             eeeEeeecccchhhhhh--------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEeeCCC
Q 031249            6 ESFFWSLLQAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCD   74 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~--------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ilv~nK~D   74 (163)
                      .++|||  |+|.++|..        +...+++++|++|||||++++.||+.+..|++.+.+..   ..++|+++|+||+|
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D  127 (198)
T cd04142          50 DLHILD--VPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD  127 (198)
T ss_pred             EEEEEe--CCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence            455666  898765432        23456799999999999999999999999999887764   35699999999999


Q ss_pred             CCCCCccCHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           75 LAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      +.+.+.+..+++..++. .++++|+++||++|.||+++|+.+++.+..+-..
T Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         128 QQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             ccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence            97766677777777654 5688999999999999999999999888865444

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.85  E-value=5e-21  Score=136.87  Aligned_cols=116  Identities=34%  Similarity=0.589  Sum_probs=102.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .+.|||  |||||.|+.+++..|.++|.||++|++++++||+.+.. |+.++++.. +++|+||||+|.|+.++      
T Consensus        54 ~L~LwD--TAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~  130 (198)
T KOG0393|consen   54 ELGLWD--TAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEK  130 (198)
T ss_pred             EEeeee--cCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHH
Confidence            345566  99999999999999999999999999999999999755 999999988 78999999999999742      


Q ss_pred             ------CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           79 ------RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                            ..++.+++..++++.| ..|+||||+++.|+.++|+..+...+....
T Consensus       131 l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  131 LQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             HHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence                  2477889999999999 559999999999999999999998877544

>cd04135 Tc10 TC10 subfamily

Probab=99.85  E-value=2.2e-20  Score=132.33  Aligned_cols=110  Identities=25%  Similarity=0.489  Sum_probs=96.0

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC-------
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR-------   78 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~-------   78 (163)
                      +++||  |+|+++|..++..+++++|++++|||++++.+|+.+. .|+..+.+. .++.|+++++||+|+.+.       
T Consensus        50 ~~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~  126 (174)
T cd04135          50 LGLYD--TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARL  126 (174)
T ss_pred             EEEEe--CCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHH
Confidence            55676  9999999999999999999999999999999999986 588888765 467999999999998543       


Q ss_pred             -----CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           79 -----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        79 -----~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                           +.+..+++..+++..+. +++++||+++.||+++|+.++..+
T Consensus       127 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         127 NDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence                 35677888899998886 699999999999999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01862 Rab7 Rab7 subfamily

Probab=99.85  E-value=5.4e-20  Score=129.81  Aligned_cols=116  Identities=39%  Similarity=0.682  Sum_probs=100.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+++||  |||++.|..++..+++++|++|+|||++++++|..+..|...+.....    .++|+++|+||+|+..++.+
T Consensus        50 ~~~~~D--~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  127 (172)
T cd01862          50 TLQIWD--TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV  127 (172)
T ss_pred             EEEEEe--CCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc
Confidence            345666  999999999999999999999999999999999999888887765542    36899999999999755666


Q ss_pred             CHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        82 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ..++...+++..+ .+++++|++++.|++++|+++.+.+.+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         128 STKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             CHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            7788888888887 78999999999999999999999887763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04114 Rab30 Rab30 subfamily

Probab=99.85  E-value=5.9e-20  Score=129.47  Aligned_cols=112  Identities=46%  Similarity=0.777  Sum_probs=99.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|+++|..++..+++.+|++++|||+++..+|..+..|+..+......+.|+++|+||+|+.+.+.+..+.
T Consensus        57 ~~~~~D--~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~  134 (169)
T cd04114          57 KLQIWD--TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQR  134 (169)
T ss_pred             EEEEEE--CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH
Confidence            456666  999999999999999999999999999999999999999998877665679999999999997767777777


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ...+.+....+++++||+++.|+.++|+++.+.+
T Consensus       135 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         135 AEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             HHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            7778777778899999999999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.85  E-value=2.1e-20  Score=131.18  Aligned_cols=110  Identities=18%  Similarity=0.276  Sum_probs=85.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      ...++|||  |+|+++|..+|..+++++|++|||||+++..+|..+..|+..+... .....|++|++||+|+.+.  ..
T Consensus        43 ~~~~~l~D--~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~  118 (159)
T cd04150          43 NISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MS  118 (159)
T ss_pred             CEEEEEEE--CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CC
Confidence            35567777  9999999999999999999999999999999999998887777543 2245899999999998542  33


Q ss_pred             HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      .++......     ..++.++++||++|.||+++|++|.+
T Consensus       119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            333322221     12334789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01863 Rab18 Rab18 subfamily

Probab=99.85  E-value=7.3e-20  Score=128.05  Aligned_cols=111  Identities=46%  Similarity=0.830  Sum_probs=98.4

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..++|||  |+|+++|..++..+++++|++++|||+++..+|+.+..|+..+.+... .+.|+++|+||+|+.. ..+..
T Consensus        49 ~~~~l~D--~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~  125 (161)
T cd01863          49 VKLAIWD--TAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTR  125 (161)
T ss_pred             EEEEEEE--CCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCH
Confidence            3566777  999999999999999999999999999999999999999999877653 5799999999999864 45667


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ++...++...+++++++||+++.|++++|+++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         126 EEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            88888998899999999999999999999999865

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.85  E-value=5e-21  Score=135.07  Aligned_cols=111  Identities=21%  Similarity=0.312  Sum_probs=91.2

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+++||  |+|+++|..+|..+++++|++|||||+++..+|..+..|+..+.... +++|+++|+||.|+...+.+..
T Consensus        43 ~~~l~i~D--t~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~  119 (164)
T cd04162          43 DAIMELLE--IGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQE  119 (164)
T ss_pred             CeEEEEEE--CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHH
Confidence            45677787  99999999999999999999999999999999999989988886544 5799999999999866443321


Q ss_pred             ----HHHHHHHHHcCCeEEEEcCCC------CCCHHHHHHHHHH
Q 031249           84 ----EEGEQFAKENGLLFLEASART------AQNVEEAFIKTAA  117 (163)
Q Consensus        84 ----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~lf~~l~~  117 (163)
                          .++..++++.++.++++||++      ++||+++|+.++.
T Consensus       120 i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         120 IHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence                123455566678899998888      9999999998863

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.84  E-value=9.3e-20  Score=127.48  Aligned_cols=113  Identities=38%  Similarity=0.609  Sum_probs=99.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+++||  |+|++++..++..+++++|++++|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.+.....
T Consensus        49 ~~~i~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~  126 (164)
T cd04139          49 QLNILD--TAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSE  126 (164)
T ss_pred             EEEEEE--CCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHH
Confidence            456666  999999999999999999999999999999999999999998877643 57999999999999764556677


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +...++..++++++++||+++.|++++|+++.+.+.
T Consensus       127 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         127 EAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             HHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            788888888999999999999999999999987765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.84  E-value=4.3e-20  Score=131.58  Aligned_cols=112  Identities=18%  Similarity=0.289  Sum_probs=88.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      ...++|||  |||++++..+|..|++++|++|||||++++.+++.+..|+..+.... ..+.|++||+||.|+.+.  ..
T Consensus        56 ~~~l~l~D--~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~  131 (175)
T smart00177       56 NISFTVWD--VGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MK  131 (175)
T ss_pred             CEEEEEEE--CCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CC
Confidence            45677888  99999999999999999999999999999999999988888875432 246899999999998542  23


Q ss_pred             HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+++.....     ...+.++++||++|.||+++|++|...+
T Consensus       132 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      132 AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            344333221     1123477899999999999999997764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.84  E-value=6.7e-20  Score=131.44  Aligned_cols=116  Identities=24%  Similarity=0.339  Sum_probs=89.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..++|||  |+|++++..+|..+++++|++|||||+++..+|..+..++..+... .....|++||+||.|+.+  .+.
T Consensus        60 ~~~~~l~D--~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~  135 (182)
T PTZ00133         60 NLKFTMWD--VGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMS  135 (182)
T ss_pred             CEEEEEEE--CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCC
Confidence            45677777  9999999999999999999999999999999999988877776443 224589999999999854  233


Q ss_pred             HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      .+++.....     ...+.++++||++|.|++++|++|.+.+.+.+
T Consensus       136 ~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        136 TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence            343322221     11224678999999999999999998887654

>cd04129 Rho2 Rho2 subfamily

Probab=99.84  E-value=1e-19  Score=130.94  Aligned_cols=113  Identities=29%  Similarity=0.540  Sum_probs=96.3

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC--------
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH--------   77 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~--------   77 (163)
                      +.+||  |+|+++|..+...+++++|+++++||+++.++|..+. .|+..+.+.. ++.|+++|+||.|+..        
T Consensus        51 l~i~D--t~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~  127 (187)
T cd04129          51 LALWD--TAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEY  127 (187)
T ss_pred             EEEEE--CCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCccccccc
Confidence            44555  9999999888888899999999999999999999986 5899887765 4699999999999843        


Q ss_pred             --CCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           78 --RRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        78 --~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                        .+.+..+++..+++..+. +++++||+++.||+++|+++++.+...
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~  175 (187)
T cd04129         128 RTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLV  175 (187)
T ss_pred             ccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence              244566788889999985 799999999999999999999877543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.84  E-value=1.5e-19  Score=128.20  Aligned_cols=111  Identities=30%  Similarity=0.562  Sum_probs=92.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |+|+++|..++..+++++|++++|||+++.++|+.+. .|+..+.+.. .+.|+++|+||.|+...      
T Consensus        50 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  126 (175)
T cd01870          50 ELALWD--TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRE  126 (175)
T ss_pred             EEEEEe--CCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhh
Confidence            345555  9999999999999999999999999999999999885 4888777654 56899999999998542      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                            ..+...++..+++..+. +++++||+++.|++++|+++++.+
T Consensus       127 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         127 LAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             hhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence                  23445677888887775 799999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.83  E-value=1.6e-19  Score=129.54  Aligned_cols=117  Identities=24%  Similarity=0.332  Sum_probs=93.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+++||  |+|+++|..+|..+++++|++++|||+++..++..+..|+.++..... .++|+++|+||+|+.+  ...
T Consensus        51 ~~~l~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~  126 (183)
T cd04152          51 GITFHFWD--VGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALS  126 (183)
T ss_pred             ceEEEEEE--CCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCC
Confidence            34677787  999999999999999999999999999999999998888888765432 4689999999999854  244


Q ss_pred             HHHHHHHHHH--c----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           83 KEEGEQFAKE--N----GLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        83 ~~~~~~~~~~--~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      .++...++..  .    +.+++++||+++.|++++|++|++.+.+.+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~  174 (183)
T cd04152         127 VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence            4555544421  1    2458899999999999999999988865443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04154 Arl2 Arl2 subfamily

Probab=99.83  E-value=8.9e-20  Score=129.46  Aligned_cols=110  Identities=19%  Similarity=0.260  Sum_probs=90.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+++||  |||++++..+|..+++++|++++|||+++..+|.....|+..+... ...+.|+++|+||+|+.+.  ..
T Consensus        57 ~~~l~l~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~  132 (173)
T cd04154          57 GYKLNIWD--VGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LS  132 (173)
T ss_pred             CEEEEEEE--CCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CC
Confidence            44667788  9999999999999999999999999999999999988888877543 2256999999999998653  34


Q ss_pred             HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      .+++..+..     ..+++++++||++|.|++++|++++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         133 EEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            555555543     23567999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01892 Miro2 Miro2 subfamily

Probab=99.83  E-value=6.2e-20  Score=130.06  Aligned_cols=111  Identities=18%  Similarity=0.199  Sum_probs=93.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.+||  |+|++++..++..+++++|++|||||++++.+|+.+..|+..+...  .++|+++|+||+|+.+.+.+...+
T Consensus        55 ~l~~~d--~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~  130 (169)
T cd01892          55 YLILRE--VGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQ  130 (169)
T ss_pred             EEEEEe--cCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccC
Confidence            345565  9999999999999999999999999999999999998888876432  368999999999996554444455


Q ss_pred             HHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        86 ~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ...+++.+++. ++++||+++.|++++|+.+++.+.
T Consensus       131 ~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         131 PDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             HHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            66778888874 799999999999999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.83  E-value=2.6e-19  Score=129.89  Aligned_cols=114  Identities=22%  Similarity=0.288  Sum_probs=95.5

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC-CCccC
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH-RRAVS   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~-~~~v~   82 (163)
                      ..++|||  |+|+++|..++..+++++|++|||||+++..+|+.+..|+..+..... .++|+++|+||.|+.. .+.+.
T Consensus        47 ~~l~i~D--~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~  124 (198)
T cd04147          47 LTLDILD--TSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP  124 (198)
T ss_pred             EEEEEEE--CCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc
Confidence            3566777  999999999999999999999999999999999999999998877654 4699999999999865 34455


Q ss_pred             HHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .++...... .++.+++++||+++.|++++|+++++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         125 AKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             HHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            555554443 45678999999999999999999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.83  E-value=4.3e-19  Score=126.51  Aligned_cols=116  Identities=35%  Similarity=0.511  Sum_probs=101.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |+|+++|..++..++..+|++++|||+++..+|+.+..|+..+.+... .+.|+++++||+|+...+.+..+
T Consensus        50 ~~~l~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~  127 (180)
T cd04137          50 HLEIVD--TAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTE  127 (180)
T ss_pred             EEEEEE--CCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHH
Confidence            356676  999999999999999999999999999999999999999888876542 56899999999999766667777


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +...++..++.+++++||+++.|+.++|+++.+.+....
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         128 EGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            777888888889999999999999999999998876553

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00876 Ras Ras family

Probab=99.83  E-value=3e-19  Score=124.34  Aligned_cols=112  Identities=39%  Similarity=0.619  Sum_probs=100.9

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..+++||  ++|++++..++..+++++|++++|||+++.+++..+..|+..+..... ...|+++++||+|+.....+..
T Consensus        47 ~~~~l~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  124 (160)
T cd00876          47 YTLDILD--TAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSK  124 (160)
T ss_pred             EEEEEEE--CCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecH
Confidence            4567777  999999999999999999999999999999999999999999877664 5799999999999977667778


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      +++..++..++.+++++|++++.|++++|++|.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         125 EEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            88888998888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00154 Rab Rab family

Probab=99.82  E-value=3.7e-19  Score=123.13  Aligned_cols=110  Identities=59%  Similarity=0.931  Sum_probs=99.2

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.+||  +||++.+..++..+++++|++++|||+++++++..+..|+..+........|+++++||+|+........+
T Consensus        49 ~~~~l~D--~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  126 (159)
T cd00154          49 VKLQIWD--TAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTE  126 (159)
T ss_pred             EEEEEEe--cCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHH
Confidence            4566777  99999999999999999999999999999999999999999998876567999999999999755667788


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~  116 (163)
                      +...++...+.+++++|++++.|++++|++|.
T Consensus       127 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         127 EAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             HHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            88889988899999999999999999999985

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04157 Arl6 Arl6 subfamily

Probab=99.81  E-value=3.6e-19  Score=124.46  Aligned_cols=110  Identities=20%  Similarity=0.290  Sum_probs=86.4

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCCCCCc
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ilv~nK~D~~~~~~   80 (163)
                      +..+++||  |||+++|..+|..+++++|++|||||+++..++..+..|+..+.+..   ..++|+++|+||+|+.+.  
T Consensus        44 ~~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--  119 (162)
T cd04157          44 NLSFTAFD--MSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--  119 (162)
T ss_pred             CEEEEEEE--CCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--
Confidence            34567777  99999999999999999999999999999999988888888776532   246999999999998543  


Q ss_pred             cCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           81 VSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        81 v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ....+......     .....++++||+++.|++++|++|.+
T Consensus       120 ~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         120 LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            22333332221     11235899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.81  E-value=1.1e-19  Score=128.53  Aligned_cols=110  Identities=22%  Similarity=0.274  Sum_probs=87.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+++||  |||++++..+|..|++++|++|||||+++..+|..+..|+..+.+... .++|++||+||.|+.+..  +
T Consensus        42 ~~~~~i~D--~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~  117 (167)
T cd04161          42 KYEVCIFD--LGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--L  117 (167)
T ss_pred             CEEEEEEE--CCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--C
Confidence            45677777  999999999999999999999999999999999999999998876432 468999999999986533  2


Q ss_pred             HHHHH------HHHHHcC--CeEEEEcCCCC------CCHHHHHHHHHH
Q 031249           83 KEEGE------QFAKENG--LLFLEASARTA------QNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~------~~~~~~~--~~~~~~Sa~~~------~~i~~lf~~l~~  117 (163)
                      ..+..      .+++..+  +.++++||++|      .|+.+.|+||+.
T Consensus       118 ~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         118 GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            22222      2232223  45788999998      899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01893 Miro1 Miro1 subfamily

Probab=99.80  E-value=1.4e-18  Score=122.56  Aligned_cols=113  Identities=27%  Similarity=0.328  Sum_probs=89.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--C
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~   82 (163)
                      .+++||  |+|.+++...+..+++++|+++||||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+....  .
T Consensus        48 ~~~i~D--t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~  124 (166)
T cd01893          48 PTTIVD--TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGL  124 (166)
T ss_pred             EEEEEe--CCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHH
Confidence            455666  9999999888888899999999999999999999985 5778777654 47999999999999664432  1


Q ss_pred             HHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .++...++..+.  ..++++||+++.|++++|+.+++.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         125 EEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence            233334444443  369999999999999999999887753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.80  E-value=9.6e-19  Score=124.43  Aligned_cols=110  Identities=25%  Similarity=0.322  Sum_probs=87.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+++||  |||+++|..+|..+++++|+++||||+++.+++.....++..+.+... ...|+++++||+|+.+  .+.
T Consensus        58 ~~~~~l~D--~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~  133 (174)
T cd04153          58 NIRFLMWD--IGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMT  133 (174)
T ss_pred             CeEEEEEE--CCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCC
Confidence            45678888  999999999999999999999999999999999888887777754432 4689999999999854  234


Q ss_pred             HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      .++.....     +..+++++++||+++.||+++|++|.+
T Consensus       134 ~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         134 PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            44432222     223456899999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.80  E-value=3.3e-19  Score=124.68  Aligned_cols=110  Identities=19%  Similarity=0.246  Sum_probs=84.4

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHH-hcCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..++|||  |||+++|..+|..+++++|++|+|+|++++.++.....++..+.+ ....+.|+++|+||+|+.+..  .
T Consensus        42 ~~~~~i~D--t~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~  117 (158)
T cd04151          42 NLKFQVWD--LGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--S  117 (158)
T ss_pred             CEEEEEEE--CCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--C
Confidence            45678888  999999999999999999999999999999888777666665533 222468999999999985432  2


Q ss_pred             HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ..+......     ..+.+++++||+++.|++++|++|++
T Consensus       118 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         118 EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            333222111     11246999999999999999999974

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.79  E-value=1.5e-18  Score=122.04  Aligned_cols=111  Identities=30%  Similarity=0.392  Sum_probs=90.3

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..+++||  |||++.+..++..+++++|+++||+|+++..++.....|+..+.+... .++|+++++||+|+.+  ..
T Consensus        48 ~~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~  123 (167)
T cd04160          48 GNARLKFWD--LGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--AL  123 (167)
T ss_pred             CCEEEEEEE--CCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CC
Confidence            345677777  999999999999999999999999999999999988888888765432 5689999999999855  34


Q ss_pred             CHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           82 SKEEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        82 ~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ..++...+...       .+.+++++||+++.|++++|++|.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         124 SVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             CHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            45555555433       2357999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.79  E-value=1.5e-18  Score=124.70  Aligned_cols=112  Identities=23%  Similarity=0.265  Sum_probs=91.9

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+.++++||  |||++++..+|..+++++|++++|+|+++..+|.....|+..+.+... .+.|+++++||+|+..  .+
T Consensus        61 ~~~~~~l~D--~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~  136 (190)
T cd00879          61 GNIKFKTFD--LGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AV  136 (190)
T ss_pred             CCEEEEEEE--CCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--Cc
Confidence            355666777  999999999999999999999999999999999888888888765432 4689999999999853  46


Q ss_pred             CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKE----------------NGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        82 ~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..+++..++..                ....++++||++++|++++|++|.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         137 SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            66777666543                12458999999999999999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00157 Rho Rho (Ras homology) family

Probab=99.79  E-value=3.4e-18  Score=120.50  Aligned_cols=109  Identities=31%  Similarity=0.584  Sum_probs=92.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCCC-----
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRR-----   79 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ilv~nK~D~~~~~-----   79 (163)
                      .+++||  |+|+++|..++..+++.+|++++|||+++..+|..... |+..+.... ...|+++|+||+|+....     
T Consensus        49 ~l~~~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~  125 (171)
T cd00157          49 NLGLWD--TAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKK  125 (171)
T ss_pred             EEEEEe--CCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhh
Confidence            467777  99999999899999999999999999999999988654 777777655 479999999999986543     


Q ss_pred             ------ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHH
Q 031249           80 ------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        80 ------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                            .+..+++..++..++. +++++||+++.|++++|.++++
T Consensus       126 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         126 LEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             cccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence                  3456778888888887 8999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.78  E-value=1.9e-18  Score=120.72  Aligned_cols=109  Identities=23%  Similarity=0.342  Sum_probs=86.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..+.+||  |+|++++..+|..+++++|+++||||+++..++..+..|+..+.+... .+.|+++|+||+|+...  ...
T Consensus        44 ~~l~i~D--~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~  119 (160)
T cd04156          44 LSLTVWD--VGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTA  119 (160)
T ss_pred             eEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCH
Confidence            3567777  999999999999999999999999999999999998888888755322 46899999999998542  333


Q ss_pred             HHHHHHH------HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           84 EEGEQFA------KENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        84 ~~~~~~~------~~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ++.....      ...+.+++++||+++.||+++|++|.+
T Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            4433222      122346899999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.78  E-value=1.7e-18  Score=120.83  Aligned_cols=110  Identities=20%  Similarity=0.248  Sum_probs=89.2

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+||  |||++++..++..+++++|++++|||++++.++..+..|+..+.... ..+.|+++++||+|+....  .
T Consensus        42 ~~~~~i~D--~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~  117 (158)
T cd00878          42 NVSFTVWD--VGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--S  117 (158)
T ss_pred             CEEEEEEE--CCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--C
Confidence            35677777  99999999999999999999999999999999999988888876643 2578999999999986532  3


Q ss_pred             HHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFAKE-----NGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      .++.......     ...+++++||+++.|++++|++|..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         118 VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            3444433322     2356999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.78  E-value=3.7e-18  Score=124.26  Aligned_cols=99  Identities=20%  Similarity=0.361  Sum_probs=82.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-------------------CCCCeE
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-------------------NPNMSI   66 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~   66 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||+++..||+.+..|+.++....                   ...+|+
T Consensus        55 ~l~IwD--taG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi  132 (202)
T cd04102          55 FVELWD--VGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPL  132 (202)
T ss_pred             EEEEEe--cCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceE
Confidence            466776  99999999999999999999999999999999999999999997642                   236899


Q ss_pred             EEEeeCCCCCCCCccCHHH----HHHHHHHcCCeEEEEcCCCCC
Q 031249           67 MLVGNKCDLAHRRAVSKEE----GEQFAKENGLLFLEASARTAQ  106 (163)
Q Consensus        67 ilv~nK~D~~~~~~v~~~~----~~~~~~~~~~~~~~~Sa~~~~  106 (163)
                      +|||||.|+.+++.+..+.    ...++++.+++.++.++.+..
T Consensus       133 ilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         133 LVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             EEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence            9999999997665555443    446788899998888887653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.77  E-value=6e-18  Score=121.48  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=89.0

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+||  |||++++..+|..+++++|++|||+|++++.++.....++..+.+.. ..++|+++|+||+|++.  .++
T Consensus        60 ~~~~~~~D--~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~  135 (184)
T smart00178       60 NIKFTTFD--LGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AAS  135 (184)
T ss_pred             CEEEEEEE--CCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCC
Confidence            45566777  99999999999999999999999999999999988888887775432 24689999999999853  456


Q ss_pred             HHHHHHHHHH------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           83 KEEGEQFAKE------------NGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        83 ~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .+++......            ....+++|||+++.|++++++||..+
T Consensus       136 ~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      136 EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            6665544321            12248999999999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.77  E-value=1.3e-17  Score=118.98  Aligned_cols=113  Identities=27%  Similarity=0.423  Sum_probs=92.9

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..+.+||  .+|++.++.+|+.|++++|++|||+|+++.+.+......+..+..... .++|+++++||+|+++  ..
T Consensus        56 ~~~~~~~~d--~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~  131 (175)
T PF00025_consen   56 KGYSLTIWD--LGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AM  131 (175)
T ss_dssp             TTEEEEEEE--ESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SS
T ss_pred             CcEEEEEEe--ccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cc
Confidence            466788888  699999999999999999999999999999888888887777755432 5799999999999854  45


Q ss_pred             CHHHHHHHHHHc------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKEN------GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        82 ~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..+++.......      .+.++.|||.+|+|+.+.|+||.+++
T Consensus       132 ~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  132 SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             THHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             hhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            666666544322      33489999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01890 LepA LepA subfamily

Probab=99.75  E-value=1.9e-17  Score=117.74  Aligned_cols=106  Identities=24%  Similarity=0.245  Sum_probs=82.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..++.....|.... .   .++|+++|+||+|+.+..  ....
T Consensus        68 ~~~l~D--t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~~~~  139 (179)
T cd01890          68 LLNLID--TPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--PERV  139 (179)
T ss_pred             EEEEEE--CCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--HHHH
Confidence            455666  9999999999999999999999999999877666665554332 2   358999999999985421  2233


Q ss_pred             HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        86 ~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ...+++.++++   ++++||++|.|++++|++|.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         140 KQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            34566666664   89999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.75  E-value=6.9e-17  Score=118.54  Aligned_cols=111  Identities=30%  Similarity=0.569  Sum_probs=94.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|+++|..++..++++++++++|||+++..+|..+..|+..+.... .+.|+++++||+|+.+ +.+..+.
T Consensus        59 ~i~~~D--t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~~  134 (215)
T PTZ00132         59 CFNVWD--TAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKARQ  134 (215)
T ss_pred             EEEEEE--CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHHH
Confidence            445555  99999999999999999999999999999999999999999997664 5689999999999854 3343333


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                       ..++...++.++++|++++.|++++|.+|.+.+..
T Consensus       135 -~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        135 -ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN  169 (215)
T ss_pred             -HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence             45677788899999999999999999999988764

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.5e-16  Score=111.59  Aligned_cols=116  Identities=20%  Similarity=0.289  Sum_probs=96.3

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCc
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~   80 (163)
                      |.+..+.+||  .+|+++++++|+.|+++.+++|||+|.+|.+-+..+...+..+..... ...|+++.+||.|++.  .
T Consensus        58 ykn~~f~vWD--vGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--a  133 (181)
T KOG0070|consen   58 YKNISFTVWD--VGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--A  133 (181)
T ss_pred             EcceEEEEEe--cCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--c
Confidence            4467888999  799999999999999999999999999999999888887777766554 5799999999999954  4


Q ss_pred             cCHHHHHHHHHHcCC-----eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAKENGL-----LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        81 v~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .+..++........+     .+..++|.+|+|+.+.++++...+..
T Consensus       134 ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  134 LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            566666555444433     38889999999999999999887754

>PLN00023 GTP-binding protein; Provisional

Probab=99.71  E-value=1e-16  Score=123.08  Aligned_cols=88  Identities=22%  Similarity=0.500  Sum_probs=76.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC------------CCCeEEEEeeCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------------PNMSIMLVGNKC   73 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ilv~nK~   73 (163)
                      .++|||  |+|+++|..++..|++++|++|+|||+++..+|+.+..|++.+.....            .++|++|||||+
T Consensus        84 ~LqIWD--TAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~  161 (334)
T PLN00023         84 FVELWD--VSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA  161 (334)
T ss_pred             EEEEEE--CCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence            467777  999999999999999999999999999999999999999999987531            248999999999


Q ss_pred             CCCCCC---c---cCHHHHHHHHHHcCC
Q 031249           74 DLAHRR---A---VSKEEGEQFAKENGL   95 (163)
Q Consensus        74 D~~~~~---~---v~~~~~~~~~~~~~~   95 (163)
                      |+.+.+   .   +..++++++++..++
T Consensus       162 DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        162 DIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccccccccccccccHHHHHHHHHHcCC
Confidence            996542   2   357899999999884

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.70  E-value=4.8e-16  Score=106.95  Aligned_cols=117  Identities=22%  Similarity=0.325  Sum_probs=96.0

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCc
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~   80 (163)
                      +.+..+++||  .+||..+++.|+.||..+||+|+|+|..|...++.....+..+.... -.+.|++|++||.|++.  .
T Consensus        57 ~~~~~L~iwD--vGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~  132 (185)
T KOG0073|consen   57 YKGYTLNIWD--VGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--A  132 (185)
T ss_pred             ecceEEEEEE--cCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--c
Confidence            5567888888  79999999999999999999999999999999988877776664422 25689999999999963  3


Q ss_pred             cCHHHH------HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           81 VSKEEG------EQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        81 v~~~~~------~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +..+++      ..+++....+++.||+.+|+++.+.|.||...+.++
T Consensus       133 l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  133 LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence            444443      344455667899999999999999999999988874

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.70  E-value=2.3e-16  Score=109.16  Aligned_cols=110  Identities=21%  Similarity=0.290  Sum_probs=85.4

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+||  |+|++++..++..+++++|++++|+|+++..++.....|+..+.... ..++|+++|+||.|+.+..  .
T Consensus        43 ~~~~~~~D--~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~  118 (159)
T cd04159          43 NVTLKVWD--LGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--S  118 (159)
T ss_pred             CEEEEEEE--CCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--C
Confidence            44567777  99999999999999999999999999999999988877777765432 2468999999999986532  2


Q ss_pred             HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ..+.....     .....+++++|++++.|++++|++|.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         119 VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            22222111     112356899999999999999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.69  E-value=2.8e-16  Score=110.69  Aligned_cols=110  Identities=17%  Similarity=0.125  Sum_probs=83.7

Q ss_pred             eeeEeeecccchh----hhhhchhhhc---cCCcEEEEEEECCCh-HHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCC
Q 031249            6 ESFFWSLLQAGQE----SFRSITRSYY---RGAAGALLVYDITRR-ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDL   75 (163)
Q Consensus         6 ~~~l~d~Dt~G~e----~~~~~~~~~~---~~ad~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~   75 (163)
                      .+.|||  |||..    .+..++..++   +.+|++++|+|+++. ++++.+..|++.+.....  ...|+++|+||+|+
T Consensus        49 ~~~l~D--tpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  126 (170)
T cd01898          49 SFVVAD--IPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL  126 (170)
T ss_pred             eEEEEe--cCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence            778888  99963    3333444444   459999999999998 789998889988876542  35899999999998


Q ss_pred             CCCCccCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .+...+ .+....+... .+.+++++||+++.|++++|+++.+.
T Consensus       127 ~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         127 LDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            664433 3344445555 36789999999999999999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=99.69  E-value=4.3e-16  Score=110.18  Aligned_cols=108  Identities=20%  Similarity=0.280  Sum_probs=84.9

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..+.+||  |+|++++..+|..+++++|++++|+|+++..++.....++..+.+.. ...+|+++++||.|+.+..  
T Consensus        56 ~~~~~~~~D--~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--  131 (173)
T cd04155          56 DGFKLNVWD--IGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--  131 (173)
T ss_pred             CCEEEEEEE--CCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--
Confidence            355677887  99999999999999999999999999999999988877777765432 2468999999999985422  


Q ss_pred             CHHHHHHHHHHcCC--------eEEEEcCCCCCCHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGL--------LFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        82 ~~~~~~~~~~~~~~--------~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ..++.   ....++        +++++||++++|++++|++|.+
T Consensus       132 ~~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         132 PAEEI---AEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             CHHHH---HHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            22332   233332        3789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.69  E-value=9e-17  Score=108.78  Aligned_cols=114  Identities=21%  Similarity=0.298  Sum_probs=88.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .+.+.+||  .+|+++|+++|+.|++.+++++||+|+.|++........+..+..... .++|+++.|||.|++.  .+.
T Consensus        64 nvtiklwD--~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~  139 (186)
T KOG0075|consen   64 NVTIKLWD--LGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALS  139 (186)
T ss_pred             ceEEEEEe--cCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--ccc
Confidence            45677888  799999999999999999999999999999888877777776654432 5799999999999855  233


Q ss_pred             HHHHHH-----HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQ-----FAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ......     -.....+.+|.+|++...|++.+..||+++...
T Consensus       140 ~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  140 KIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence            322211     112223458999999999999999999887643

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.68  E-value=5.8e-17  Score=113.72  Aligned_cols=134  Identities=33%  Similarity=0.534  Sum_probs=109.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~   80 (163)
                      ++++|||  .+||++|..|...|++.+++.++|||++...+|+....|.+.+-....    .+.|+++.+||+|......
T Consensus        75 vRlqLwd--IagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~  152 (229)
T KOG4423|consen   75 VRLQLWD--IAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK  152 (229)
T ss_pred             HHHHHhc--chhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh
Confidence            4678999  799999999999999999999999999999999999999999844332    4689999999999854221


Q ss_pred             c-CHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceec
Q 031249           81 V-SKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG  140 (163)
Q Consensus        81 v-~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~  140 (163)
                      . .......+.+++|+. .+++|++.+.++.+.-+.+++.++.+-.+...+.......+++.
T Consensus       153 ~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~  214 (229)
T KOG4423|consen  153 NEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQPIKSSAVDGDKINLR  214 (229)
T ss_pred             hhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccCCcccccccccccCcc
Confidence            1 135667788899987 99999999999999999999999988766665555555544443

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.67  E-value=9.7e-16  Score=119.28  Aligned_cols=116  Identities=13%  Similarity=0.034  Sum_probs=89.1

Q ss_pred             cceeeEeeecccchhh----hhhch---hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCC
Q 031249            4 SQESFFWSLLQAGQES----FRSIT---RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCD   74 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~----~~~~~---~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D   74 (163)
                      +..+.|||  |||.-+    ...+.   ..+++.++++|+|+|+++.++++++..|++++..+..  .++|+++|+||+|
T Consensus       205 ~~~~~i~D--~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiD  282 (335)
T PRK12299        205 YKSFVIAD--IPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKID  282 (335)
T ss_pred             CcEEEEEe--CCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcc
Confidence            34688888  899632    12233   3356679999999999988789999999999977643  3689999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +.+...+..+....++...+.+++++||+++.||+++|++|.+.+.+
T Consensus       283 L~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        283 LLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             cCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            86544444344555556667889999999999999999999887654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.67  E-value=5.3e-16  Score=109.13  Aligned_cols=111  Identities=20%  Similarity=0.150  Sum_probs=79.0

Q ss_pred             cceeeEeeecccchhhhh---------hchhhhccCCcEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            4 SQESFFWSLLQAGQESFR---------SITRSYYRGAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~---------~~~~~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      +.+++|||  |||+....         .........+|++|+|+|+++..++  .....|+..+.... .+.|+++|+||
T Consensus        46 ~~~~~i~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK  122 (168)
T cd01897          46 YLRWQVID--TPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNK  122 (168)
T ss_pred             ceEEEEEE--CCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEc
Confidence            45778888  99974211         0111112346899999999987654  55566888776543 46899999999


Q ss_pred             CCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        73 ~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .|+.+...+.  +...+....+.+++++||+++.|++++|+++.+.+
T Consensus       123 ~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         123 IDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             cccCchhhHH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            9986543332  24455555567899999999999999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.67  E-value=1.2e-15  Score=104.05  Aligned_cols=120  Identities=22%  Similarity=0.343  Sum_probs=102.6

Q ss_pred             eeeEeeecccchhhh-hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            6 ESFFWSLLQAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~-~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      .+.|+|  |+|...+ ..+-+.|+.-+|+|++||+..|++||+.+..+-+.|-+..+ ..+|+++++||+|+.+++++..
T Consensus        61 ~l~lyD--TaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~  138 (198)
T KOG3883|consen   61 QLRLYD--TAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM  138 (198)
T ss_pred             eEEEee--cccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence            456666  9998777 56778899999999999999999999988776666655444 4599999999999999899999


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      +-+..|++.-.+..+++++.+...+-+.|..+...+..-+.+..
T Consensus       139 d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~  182 (198)
T KOG3883|consen  139 DVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKST  182 (198)
T ss_pred             HHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCccccc
Confidence            99999999999999999999999999999999887766554443

>cd04171 SelB SelB subfamily

Probab=99.65  E-value=2.7e-15  Score=104.77  Aligned_cols=106  Identities=22%  Similarity=0.118  Sum_probs=75.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      +..+++||  |||+++|......+++++|++++|+|+++   .++++.+    ..+...  ...|+++++||+|+.+...
T Consensus        50 ~~~~~~~D--tpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~  121 (164)
T cd04171          50 GKRLGFID--VPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDW  121 (164)
T ss_pred             CcEEEEEE--CCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHH
Confidence            45678888  99999998877788999999999999987   3333332    222222  1248999999999865321


Q ss_pred             --cCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           81 --VSKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        81 --v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                        ...++.......   .+.+++++||+++.|++++|+.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         122 LELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence              112334444444   3567999999999999999998753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.63  E-value=1.8e-15  Score=103.79  Aligned_cols=98  Identities=17%  Similarity=0.100  Sum_probs=74.9

Q ss_pred             eEeeecccch-----hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            8 FFWSLLQAGQ-----ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         8 ~l~d~Dt~G~-----e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .+||  |||+     +.|..+.. .++++|++|+|||++++.++.. ..|...+      ..|+++|+||+|+.+ +...
T Consensus        38 ~~iD--t~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~  106 (142)
T TIGR02528        38 GAID--TPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVD  106 (142)
T ss_pred             eeec--CchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccC
Confidence            4565  9997     34554544 5899999999999999998765 2343321      249999999999865 3445


Q ss_pred             HHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHH
Q 031249           83 KEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~  116 (163)
                      .+++..+++..+. +++++||+++.|++++|+++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       107 IERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            6777778877776 699999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.62  E-value=8.1e-15  Score=101.83  Aligned_cols=106  Identities=17%  Similarity=0.149  Sum_probs=80.0

Q ss_pred             cceeeEeeecccchhhhhh------chhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFRS------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~------~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +..+.|||  |||++.+..      ++..++.  .+|++|+|+|+++.....   .++..+.+   .++|+++++||+|+
T Consensus        42 ~~~~~liD--tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl  113 (158)
T cd01879          42 GKEIEIVD--LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDE  113 (158)
T ss_pred             CeEEEEEE--CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhh
Confidence            45667777  999988765      3566665  999999999998764432   34444443   35899999999999


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .....+.. ....+....+.+++++||.++.|+.++|+++...
T Consensus       114 ~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         114 AEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             cccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            66444433 3456777778899999999999999999998775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.62  E-value=2e-14  Score=105.33  Aligned_cols=120  Identities=38%  Similarity=0.537  Sum_probs=92.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC-----
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR-----   79 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~-----   79 (163)
                      .+++||  |+|+++|..++..|+.+++++++|||.++ ..+++....|++.+........|+++++||+|+....     
T Consensus        55 ~~~~~D--t~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~  132 (219)
T COG1100          55 KLQLWD--TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEE  132 (219)
T ss_pred             EEEeec--CCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHH
Confidence            356666  99999999999999999999999999999 5556667789999988765569999999999997653     


Q ss_pred             -------ccCHHHHHHHHHHc---CCeEEEEcCC--CCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           80 -------AVSKEEGEQFAKEN---GLLFLEASAR--TAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        80 -------~v~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                             ..............   ...++++|++  .+.+|.++|..++..+.+......
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         133 ILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             HHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence                   22222222222222   3338999999  999999999999999987654443

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.61  E-value=4.8e-15  Score=101.38  Aligned_cols=114  Identities=25%  Similarity=0.420  Sum_probs=94.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-----Cc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-----RA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-----~~   80 (163)
                      .+.|||  .+|+++|..+++...+++-+++|+||.+.+.++..+..|+.+.+..+...+| |+||||.|+--+     ++
T Consensus        70 sfSIwd--lgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~  146 (205)
T KOG1673|consen   70 SFSIWD--LGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQE  146 (205)
T ss_pred             EEEEEe--cCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHH
Confidence            455666  7999999999999999999999999999999999999999999887766667 778999996321     11


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ....+++.+++..+.+.++||+....||..+|.-++..+...
T Consensus       147 ~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  147 TISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence            112346677888889999999999999999999998887654

>cd01878 HflX HflX subfamily

Probab=99.61  E-value=5.7e-15  Score=107.39  Aligned_cols=105  Identities=19%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             eeeEeeecccchh---------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQE---------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e---------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      .+.|||  |||..         .|...+ ..+.++|++++|+|+++..++.....|.+.+......+.|+++|+||+|+.
T Consensus        90 ~~~i~D--t~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~  166 (204)
T cd01878          90 EVLLTD--TVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL  166 (204)
T ss_pred             eEEEeC--CCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence            677777  99972         233222 246789999999999998888887777777766544568999999999986


Q ss_pred             CCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           77 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        77 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      +....     .........+++++||+++.|++++|++|...
T Consensus       167 ~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         167 DDEEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             ChHHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence            53221     13344456679999999999999999999765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.60  E-value=3.2e-14  Score=96.77  Aligned_cols=111  Identities=50%  Similarity=0.792  Sum_probs=85.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+||  ++|+..+...+..+++.+|++++|+|+++..++..+..|+ ..+.......+|+++++||+|+.......
T Consensus        44 ~~~~~l~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~  121 (157)
T cd00882          44 KVKLQIWD--TAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS  121 (157)
T ss_pred             EEEEEEEe--cCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence            34566666  9999999988899999999999999999999998887773 22233333679999999999986543322


Q ss_pred             HHH-HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249           83 KEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        83 ~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~  116 (163)
                      ... ..........+++++|+.++.|+++++++|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            222 3344555678899999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=4.3e-15  Score=103.25  Aligned_cols=116  Identities=28%  Similarity=0.377  Sum_probs=93.0

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ...++.+||  .+||+..+++|..||..+|++|+++|+++++-|+.....++.+.... -.+.|+++.+||.|+.+.  .
T Consensus        67 ~~~~l~fwd--lgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~  142 (197)
T KOG0076|consen   67 CNAPLSFWD--LGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--M  142 (197)
T ss_pred             ccceeEEEE--cCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--h
Confidence            356889999  69999999999999999999999999999999988777777664433 368999999999998653  2


Q ss_pred             CHHHHHHH---HHH---cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQF---AKE---NGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        82 ~~~~~~~~---~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ...++...   +..   ...++.+|||.+|+||.+...|+++.+.++
T Consensus       143 ~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  143 EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            33333322   222   235699999999999999999999988766

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=1.6e-14  Score=97.23  Aligned_cols=114  Identities=19%  Similarity=0.321  Sum_probs=91.2

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCc
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      |.++.|.+||  .+|+++.+++|+.||.+..++|||.|..+.+..+++...+..+... .....|+++.+||.|++.  .
T Consensus        58 ykN~kfNvwd--vGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A  133 (180)
T KOG0071|consen   58 YKNVKFNVWD--VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--A  133 (180)
T ss_pred             eeeeEEeeee--ccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--c
Confidence            5677888999  7999999999999999999999999999988888777655555333 335789999999999965  4


Q ss_pred             cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        81 v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..++++..+..--.     ..+.+++|.++++..+.|.||...+
T Consensus       134 ~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  134 MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            56677766554322     2388999999999999999997643

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.59  E-value=1.1e-14  Score=105.29  Aligned_cols=101  Identities=19%  Similarity=0.135  Sum_probs=71.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc-cC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~-v~   82 (163)
                      +..++|||  |||+++|..++..+++++|++++|||+++.. +.....++..+..   .++|+++++||+|+.+... ..
T Consensus        64 ~~~~~l~D--tpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~  137 (194)
T cd01891          64 DTKINIVD--TPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEV  137 (194)
T ss_pred             CEEEEEEE--CCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHH
Confidence            34567777  9999999999999999999999999998742 2333344444433   3589999999999864321 11


Q ss_pred             HHHHHHHHHH-------cCCeEEEEcCCCCCCHHH
Q 031249           83 KEEGEQFAKE-------NGLLFLEASARTAQNVEE  110 (163)
Q Consensus        83 ~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~  110 (163)
                      .+++..+...       .+++++++||++|.|+.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         138 VDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN  172 (194)
T ss_pred             HHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence            2344444422       367799999999987743

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.58  E-value=1.3e-14  Score=102.50  Aligned_cols=113  Identities=18%  Similarity=0.143  Sum_probs=81.9

Q ss_pred             cceeeEeeecccchhh----hhhch---hhhccCCcEEEEEEECCCh------HHHHHHHHHHHHHHHhcC-------CC
Q 031249            4 SQESFFWSLLQAGQES----FRSIT---RSYYRGAAGALLVYDITRR------ETFNHLSSWLEDARQHAN-------PN   63 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~----~~~~~---~~~~~~ad~~i~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~   63 (163)
                      +.++.|||  |||...    ...++   ..+++++|++++|+|+++.      .++..+..|...+.....       ..
T Consensus        43 ~~~~~i~D--tpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (176)
T cd01881          43 GARIQVAD--IPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA  120 (176)
T ss_pred             CCeEEEEe--ccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence            56777888  999632    23333   3357889999999999988      578877777777754432       35


Q ss_pred             CeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .|+++|+||+|+..................+.+++++||+++.|++++++++...
T Consensus       121 ~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         121 KPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             CCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            8999999999986544333322233444456679999999999999999998654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.58  E-value=3.3e-14  Score=99.78  Aligned_cols=110  Identities=16%  Similarity=0.148  Sum_probs=75.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-   82 (163)
                      +..+.+||  |||++.|..++..+++.+|++++|+|+++..... ....+..+..   .++|+++|+||+|+.+..... 
T Consensus        49 ~~~~~iiD--tpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~  122 (168)
T cd01887          49 IPGITFID--TPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERV  122 (168)
T ss_pred             cceEEEEe--CCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHH
Confidence            45677777  9999999999999999999999999998742111 1112222332   358999999999986421100 


Q ss_pred             HHHHHHHHH----H--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAK----E--NGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~----~--~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ......+..    .  ...+++++|++++.|++++|++|.+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         123 KNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             HHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence            011111111    1  125699999999999999999998764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.57  E-value=5.7e-14  Score=98.62  Aligned_cols=106  Identities=23%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE   87 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~   87 (163)
                      .+|-+|||||+||..||..+.++++++|+++|.+....+ .....+..+....  ..|++|++||.|+.+  ..+++++.
T Consensus        69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~  143 (187)
T COG2229          69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIR  143 (187)
T ss_pred             eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHH
Confidence            344445999999999999999999999999999999988 5566777776554  289999999999965  45778887


Q ss_pred             HHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           88 QFAKEN--GLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        88 ~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ++.+..  ..++++.+|..+++..+.+..++..
T Consensus       144 e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         144 EALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            777655  7889999999999999998888765

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.57  E-value=3.5e-14  Score=110.45  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             ceeeEeeecccchhhh----hhchhhh---ccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEeeC
Q 031249            5 QESFFWSLLQAGQESF----RSITRSY---YRGAAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNK   72 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~----~~~~~~~---~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK   72 (163)
                      ..++|||  |||....    ..+...+   ++.+|++++|+|+++.   ++++++..|.+++..+..  ..+|++||+||
T Consensus       205 ~~~~i~D--~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK  282 (329)
T TIGR02729       205 RSFVIAD--IPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNK  282 (329)
T ss_pred             eEEEEEe--CCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeC
Confidence            4677777  8997422    2233344   4579999999999986   678888888888866542  46899999999


Q ss_pred             CCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        73 ~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +|+.+... ..+....+.+..+.+++++||+++.||+++++++.+.+
T Consensus       283 ~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       283 IDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            99865422 23344456666678899999999999999999997653

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.57  E-value=1.4e-14  Score=108.45  Aligned_cols=96  Identities=22%  Similarity=0.285  Sum_probs=79.8

Q ss_pred             hhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249           18 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL   96 (163)
Q Consensus        18 e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~   96 (163)
                      |+|..+.+.+++++|++++|||++++. +|..+..|+..+..   .++|++||+||+|+.+++.+..+.+..+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            889999999999999999999999877 89999999987654   3589999999999965444433444444 357889


Q ss_pred             EEEEcCCCCCCHHHHHHHHHH
Q 031249           97 FLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        97 ~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.55  E-value=4.1e-14  Score=99.27  Aligned_cols=102  Identities=15%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             Eeeecccch-----hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            9 FWSLLQAGQ-----ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         9 l~d~Dt~G~-----e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +||  |||.     +.+..++ ..++.+|++++|+|+++..++..  .|+..+    ..+.|+++++||.|+.+   ...
T Consensus        41 ~iD--tpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~  108 (158)
T PRK15467         41 DID--TPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADV  108 (158)
T ss_pred             ccc--CCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccH
Confidence            455  9996     3333333 34789999999999998876633  343333    13579999999999854   345


Q ss_pred             HHHHHHHHHcCC--eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGL--LFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        84 ~~~~~~~~~~~~--~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +....++...++  +++++||++++|++++|+.+.+.+.+.
T Consensus       109 ~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        109 AATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             HHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence            667777777775  799999999999999999986655443

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.55  E-value=6.9e-14  Score=96.16  Aligned_cols=109  Identities=33%  Similarity=0.467  Sum_probs=84.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh-HHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      ..+.+||  |+|++++..++..+.++++++++++|.... .++.... .|...+......+.|+++++||.|+.... ..
T Consensus        50 ~~~~~~D--~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~  126 (161)
T TIGR00231        50 YKFNLLD--TAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LK  126 (161)
T ss_pred             EEEEEEE--CCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hh
Confidence            3455666  999999999999999999999999999877 6776665 66666665553378999999999986533 33


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~  116 (163)
                      ......+......+++++||+++.|+.++|++|-
T Consensus       127 ~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       127 THVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             HHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            3333344444456799999999999999999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.55  E-value=5.2e-14  Score=116.99  Aligned_cols=106  Identities=21%  Similarity=0.214  Sum_probs=81.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|...+..+++.+|++|+|+|+++..++.....|...+.    .+.|+++|+||+|+....  ....
T Consensus        71 ~l~liD--TPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~  142 (595)
T TIGR01393        71 VLNLID--TPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERV  142 (595)
T ss_pred             EEEEEE--CCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHH
Confidence            456666  99999999999999999999999999998766666555554432    247999999999985421  2223


Q ss_pred             HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        86 ~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..++.+.+++.   ++++||+++.|++++|+++.+.+
T Consensus       143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            34555556653   89999999999999999998765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK04213 GTP-binding protein; Provisional

Probab=99.54  E-value=9.1e-15  Score=106.06  Aligned_cols=106  Identities=20%  Similarity=0.183  Sum_probs=73.3

Q ss_pred             eeeEeeecccc-----------hhhhhhchhhhcc----CCcEEEEEEECCChHHHH----------HHHHHHHHHHHhc
Q 031249            6 ESFFWSLLQAG-----------QESFRSITRSYYR----GAAGALLVYDITRRETFN----------HLSSWLEDARQHA   60 (163)
Q Consensus         6 ~~~l~d~Dt~G-----------~e~~~~~~~~~~~----~ad~~i~v~d~~~~~s~~----------~~~~~~~~l~~~~   60 (163)
                      .+++||  |||           ++++..++..+++    .++++++|+|.++...+.          ....++..+..  
T Consensus        53 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  128 (201)
T PRK04213         53 DFILTD--LPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--  128 (201)
T ss_pred             ceEEEe--CCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--
Confidence            577888  999           7888888888765    357888888876532210          00112222222  


Q ss_pred             CCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           61 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---------LFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        61 ~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                       .++|+++|+||+|+.+..   .+....+.+..++         +++++||+++ |++++|++|.+.+.
T Consensus       129 -~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        129 -LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             -cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence             358999999999985432   3445556666654         4899999999 99999999988754

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.54  E-value=5.8e-14  Score=102.33  Aligned_cols=107  Identities=23%  Similarity=0.221  Sum_probs=74.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      ..+.|||  |||+++|...+...+..+|++++|+|++++    ++++.+    ..+...  ...|+++++||+|+.+...
T Consensus        83 ~~i~~iD--tPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~~~~--~~~~iiivvNK~Dl~~~~~  154 (203)
T cd01888          83 RHVSFVD--CPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AALEIM--GLKHIIIVQNKIDLVKEEQ  154 (203)
T ss_pred             cEEEEEE--CCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHHHHc--CCCcEEEEEEchhccCHHH
Confidence            3566666  999999988888888899999999999873    233322    222222  1247999999999864221


Q ss_pred             c--CHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           81 V--SKEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        81 v--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .  ..+++..++..+   +.+++++||+++.|++++|+.+.+.+
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            1  112333344332   56799999999999999999987643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.54  E-value=4.4e-14  Score=114.88  Aligned_cols=117  Identities=17%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             ccceeeEeeecccch----------hhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQ----------ESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~----------e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ++..+.|||  |||.          +.|..+. ..+++++|++|+|||+++..++.++. ++..+..   .++|+++|+|
T Consensus       257 ~~~~~~l~D--TaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~N  330 (472)
T PRK03003        257 GGKTWRFVD--TAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFN  330 (472)
T ss_pred             CCEEEEEEE--CCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence            466788888  9994          5555544 34689999999999999988887763 4444443   3589999999


Q ss_pred             CCCCCCCCcc--CHHHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           72 KCDLAHRRAV--SKEEGEQ-FAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        72 K~D~~~~~~v--~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      |+|+.+....  ...+... +......+++++||++|.||+++|+.+.+.+......
T Consensus       331 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~  387 (472)
T PRK03003        331 KWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTR  387 (472)
T ss_pred             CcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            9999642111  0111211 2222346799999999999999999998877544433

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.53  E-value=1.7e-13  Score=107.50  Aligned_cols=107  Identities=20%  Similarity=0.152  Sum_probs=77.9

Q ss_pred             ccceeeEeeecccch---------hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249            3 FSQESFFWSLLQAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~---------e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      ++.++.|||  |+|.         +.|...+ ..+++||++++|+|++++.++..+..|...+......+.|+++|+||+
T Consensus       235 ~~~~i~l~D--T~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~  311 (351)
T TIGR03156       235 DGGEVLLTD--TVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKI  311 (351)
T ss_pred             CCceEEEEe--cCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEee
Confidence            356777777  9997         3444433 358899999999999998888877666666655443468999999999


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        74 D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      |+.....     ..... ....+++++||+++.|++++++.|.+.
T Consensus       312 Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       312 DLLDEPR-----IERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             cCCChHh-----HHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            9854221     11111 223468999999999999999998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01894 EngA1 EngA1 subfamily

Probab=99.52  E-value=1e-13  Score=96.01  Aligned_cols=104  Identities=16%  Similarity=0.052  Sum_probs=72.5

Q ss_pred             cceeeEeeecccchhhhhh--------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~--------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +..+.+||  |||...+..        .+..+++.+|++++|+|..+..+.... .+...+...   +.|+++|+||+|+
T Consensus        44 ~~~~~i~D--tpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~  117 (157)
T cd01894          44 GREFILID--TGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDN  117 (157)
T ss_pred             CeEEEEEE--CCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECccc
Confidence            34455666  999877543        344578899999999999875444332 233333332   4899999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .+....     .......+. +++++|++++.|++++|+++++.
T Consensus       118 ~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         118 IKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             CChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            653221     223334565 68999999999999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=1.1e-13  Score=93.66  Aligned_cols=117  Identities=18%  Similarity=0.259  Sum_probs=87.8

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHH-HHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      |.+.++++||  .+|+-..+++|+.||.+.|++|||+|.+|.+........+-.+ .+..-....++|++||.|.+.  .
T Consensus        59 yKNLk~~vwd--LggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~  134 (182)
T KOG0072|consen   59 YKNLKFQVWD--LGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--A  134 (182)
T ss_pred             cccccceeeE--ccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--h
Confidence            3467899999  5999999999999999999999999999988776655544444 333224578899999999743  2


Q ss_pred             cCHHHHHHH-----HHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           81 VSKEEGEQF-----AKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        81 v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ....++...     .+..-..+++.||.++.|+++.++||.+.+.++
T Consensus       135 ~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  135 LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence            333333222     222235699999999999999999999887653

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.50  E-value=1.6e-13  Score=110.55  Aligned_cols=108  Identities=19%  Similarity=0.096  Sum_probs=82.9

Q ss_pred             ccceeeEeeecccchhhhhhc--------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      ++.++.+||  |||++++...        ...+++++|++++|||++++.+++..  |+..+..   .++|+++|+||+|
T Consensus       249 ~g~~v~l~D--TaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~D  321 (442)
T TIGR00450       249 NGILIKLLD--TAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKID  321 (442)
T ss_pred             CCEEEEEee--CCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECcc
Confidence            466778888  9998655432        24578999999999999998887765  6666543   3589999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      +.+.      +...+++..+.+++++||++ .||+++|+.|.+.+.+...
T Consensus       322 l~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       322 LKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFYS  364 (442)
T ss_pred             CCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence            8542      12345566778899999998 6999999999998877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.50  E-value=2.8e-13  Score=96.62  Aligned_cols=109  Identities=22%  Similarity=0.187  Sum_probs=79.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--   82 (163)
                      ..+.|||  |||+.++...+..+++.+|++++|+|+.+..+... ..++..+..   .+.|+++++||+|+..+....  
T Consensus        62 ~~~~liD--tpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~  135 (189)
T cd00881          62 RRVNFID--TPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEV  135 (189)
T ss_pred             EEEEEEe--CCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHH
Confidence            3456666  99999999999999999999999999987654433 234444443   358999999999986522211  


Q ss_pred             HHHHHHHHHH--------------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKE--------------NGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+++......              ...+++++||+++.|++++|.++...+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         136 LREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            2233333332              245699999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.48  E-value=8.7e-13  Score=105.48  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=85.6

Q ss_pred             cceeeEeeecccchhh----hhhchhhh---ccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEee
Q 031249            4 SQESFFWSLLQAGQES----FRSITRSY---YRGAAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGN   71 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~----~~~~~~~~---~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ilv~n   71 (163)
                      +..+.|||  |||...    ...+...|   ++.++++|+|+|+++.   ++++++..|.+++..+..  ..+|++||+|
T Consensus       205 ~~~~~laD--~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N  282 (424)
T PRK12297        205 GRSFVMAD--IPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN  282 (424)
T ss_pred             CceEEEEE--CCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence            45678888  899632    22344444   4569999999999864   677888888888877643  3689999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |+|+..    ..+....+.+..+.+++++||+++.|+++++++|.+.+...
T Consensus       283 K~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        283 KMDLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999843    23455666666677899999999999999999998876554

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.48  E-value=2.7e-13  Score=110.30  Aligned_cols=108  Identities=19%  Similarity=0.149  Sum_probs=77.2

Q ss_pred             ccceeeEeeecccchh--------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQE--------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e--------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      ++..+.|||  |||.+        .+...+..+++.+|++|||||+++..++.+ ..+...+..   .++|+++|+||+|
T Consensus        84 ~~~~~~l~D--T~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~D  157 (472)
T PRK03003         84 NGRRFTVVD--TGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVD  157 (472)
T ss_pred             CCcEEEEEe--CCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcc
Confidence            355677887  99975        344556778999999999999998766543 334444443   3589999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +...   ..+....+  ..++ .++++||++|.|++++|++++..+.+
T Consensus       158 l~~~---~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        158 DERG---EADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCcc---chhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence            8532   11222222  2343 35799999999999999999988754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.48  E-value=4e-13  Score=108.02  Aligned_cols=114  Identities=19%  Similarity=0.119  Sum_probs=78.2

Q ss_pred             ccceeeEeeecccchhhhhhc----------h-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSI----------T-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~----------~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ++..+.|||  |||..++..+          . ..+++.+|++|+|+|+++..+..+. .++..+.+   .++|+++|+|
T Consensus       218 ~~~~~~liD--T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~N  291 (429)
T TIGR03594       218 NGKKYLLID--TAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVN  291 (429)
T ss_pred             CCcEEEEEE--CCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEE
Confidence            355678888  9997554332          1 2468899999999999988776654 33444433   3589999999


Q ss_pred             CCCCCCCCccCHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVSKEEGEQ-FAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      |+|+.++ ....++... +...    ...+++++||++|.|++++|+++...+....
T Consensus       292 K~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       292 KWDLVKD-EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             CcccCCC-HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999631 111222222 2222    2467999999999999999999988765543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.48  E-value=3.9e-13  Score=111.43  Aligned_cols=100  Identities=22%  Similarity=0.262  Sum_probs=75.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .+.|||  |||+++|..++...++.+|++|+|+|+++.   ++++.    +..+..   .++|+++++||+|+.+   ..
T Consensus       136 ~i~~iD--TPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~----i~~~~~---~~vPiIVviNKiDl~~---~~  203 (587)
T TIGR00487       136 MITFLD--TPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA----ISHAKA---ANVPIIVAINKIDKPE---AN  203 (587)
T ss_pred             EEEEEE--CCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH----HHHHHH---cCCCEEEEEECccccc---CC
Confidence            677777  999999999999999999999999999873   33332    222222   3589999999999854   23


Q ss_pred             HHHHHHHHHHcC---------CeEEEEcCCCCCCHHHHHHHHHH
Q 031249           83 KEEGEQFAKENG---------LLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        83 ~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      .+++...+...+         .+++++||++|.|+.++|+++..
T Consensus       204 ~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       204 PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            344444433332         46999999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.47  E-value=2.2e-13  Score=110.10  Aligned_cols=103  Identities=21%  Similarity=0.146  Sum_probs=77.8

Q ss_pred             ccceeeEeeecccchhhhhhc--------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      ++.++.|||  |||.+.+...        ...+++++|++++|||++++.++++...|..      ..+.|+++|+||+|
T Consensus       261 ~g~~i~l~D--T~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~D  332 (449)
T PRK05291        261 DGIPLRLID--TAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKAD  332 (449)
T ss_pred             CCeEEEEEe--CCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhh
Confidence            466788888  9998765432        2347889999999999999877775433332      24589999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +.+.....        ...+.+++++||+++.|++++++++.+.+..
T Consensus       333 L~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        333 LTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             ccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            86532221        3345679999999999999999999888754

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.46  E-value=6.5e-13  Score=110.59  Aligned_cols=108  Identities=20%  Similarity=0.200  Sum_probs=80.5

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |||+++|...+..+++.+|++|+|+|+++.........|.... .   .+.|+++|+||+|+....  ...
T Consensus        74 ~~lnLiD--TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~--~~~  145 (600)
T PRK05433         74 YILNLID--TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAAD--PER  145 (600)
T ss_pred             EEEEEEE--CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCccc--HHH
Confidence            3456666  9999999999999999999999999999865554444443322 2   358999999999985421  122


Q ss_pred             HHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        85 ~~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ....+....++.   ++++||+++.|+.+++++|...+.
T Consensus       146 v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        146 VKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             HHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            233444555654   899999999999999999987654

>TIGR00436 era GTP-binding protein Era

Probab=99.45  E-value=1.2e-12  Score=99.42  Aligned_cols=106  Identities=17%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             eeeEeeecccchhhhh--------hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            6 ESFFWSLLQAGQESFR--------SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~--------~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      .+.|||  |||.....        .....+++++|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+
T Consensus        49 qii~vD--TPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~  121 (270)
T TIGR00436        49 QIIFID--TPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF  121 (270)
T ss_pred             EEEEEE--CcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC
Confidence            455565  99964321        12345788999999999999876654  334444443   3589999999999864


Q ss_pred             CCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           78 RRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        78 ~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ... .......+....++ +++++||++|.|++++++++.+.+
T Consensus       122 ~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436       122 KDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             HHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            222 22334445444454 699999999999999999987764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.44  E-value=8.3e-13  Score=112.23  Aligned_cols=103  Identities=19%  Similarity=0.283  Sum_probs=75.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      +..+.|||  |||++.|..++...++.+|++|||||+++   +++++.+    ..+.   ..++|+||++||+|+++.  
T Consensus       336 ~~~ItfiD--TPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~~a~---~~~vPiIVviNKiDl~~a--  404 (787)
T PRK05306        336 GGKITFLD--TPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----NHAK---AAGVPIIVAINKIDKPGA--  404 (787)
T ss_pred             CEEEEEEE--CCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----HHHH---hcCCcEEEEEECcccccc--
Confidence            44566666  99999999999999999999999999988   3344332    2222   245899999999998542  


Q ss_pred             cCHHHHHH-------HHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           81 VSKEEGEQ-------FAKENG--LLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        81 v~~~~~~~-------~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                       ..+....       +...++  ++++++||++|.|++++|++|...
T Consensus       405 -~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        405 -NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             -CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence             1222221       223333  679999999999999999998753

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.44  E-value=1.8e-13  Score=92.35  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=84.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .|++-.||.+|+...+..|..||.+.|++|||+|.+|..-|+.+.+.+.++.+... ..+|+++.+||.|+....  ..+
T Consensus        61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa--~~e  138 (185)
T KOG0074|consen   61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA--KVE  138 (185)
T ss_pred             cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc--chH
Confidence            34554455899999999999999999999999999999999998887777755443 569999999999986532  223


Q ss_pred             HHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           85 EGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        85 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      +...-+.     ....++.+|||.+++++.+..+|+..
T Consensus       139 eia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  139 EIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             HHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence            3222222     22245899999999999999888754

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.44  E-value=1.2e-12  Score=110.58  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=76.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ..+.|||  |||++.|..++..+++.+|++|+|+|+++.   ++++.+    ..+..   .++|+++++||+|+...   
T Consensus       295 ~kItfiD--TPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I----~~~k~---~~iPiIVViNKiDl~~~---  362 (742)
T CHL00189        295 QKIVFLD--TPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI----NYIQA---ANVPIIVAINKIDKANA---  362 (742)
T ss_pred             eEEEEEE--CCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH----HHHHh---cCceEEEEEECCCcccc---
Confidence            4556666  999999999999999999999999999874   444433    22222   35899999999998642   


Q ss_pred             CHHHHHHH-------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           82 SKEEGEQF-------AKENG--LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        82 ~~~~~~~~-------~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..+++...       ...++  ++++++||++|.|++++|+++....
T Consensus       363 ~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        363 NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            22322222       22233  6799999999999999999987763

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.44  E-value=6.4e-13  Score=110.50  Aligned_cols=108  Identities=16%  Similarity=0.149  Sum_probs=81.0

Q ss_pred             ccceeeEeeecccchhhhhhc------hhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSI------TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~------~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      ++..+++||  |||++++...      .+.++  +++|++++|+|.++.+.   ...+..++.+   .++|+++++||+|
T Consensus        39 ~~~~i~lvD--tPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~D  110 (591)
T TIGR00437        39 QGEDIEIVD--LPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVD  110 (591)
T ss_pred             CCeEEEEEE--CCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhH
Confidence            455678888  9999887654      44444  37999999999987432   2233333333   3589999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +.+.+.+. .+...+.+..+++++++||+++.|++++|+++.+..
T Consensus       111 l~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       111 EAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             HHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            86554443 456778888899999999999999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK15494 era GTPase Era; Provisional

Probab=99.44  E-value=1.3e-12  Score=102.23  Aligned_cols=108  Identities=20%  Similarity=0.274  Sum_probs=74.3

Q ss_pred             ccceeeEeeecccchhh-hhhch-------hhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCC
Q 031249            3 FSQESFFWSLLQAGQES-FRSIT-------RSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~-~~~~~-------~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      ++..+.|||  |||..+ +..+.       ..+++++|+++||+|..+  ++.... .|+..+...   +.|+++|+||+
T Consensus        98 ~~~qi~~~D--TpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKi  170 (339)
T PRK15494         98 KDTQVILYD--TPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKI  170 (339)
T ss_pred             CCeEEEEEE--CCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhh
Confidence            345667777  999843 33222       234789999999999765  344443 355555443   36778999999


Q ss_pred             CCCCCCccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           74 DLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        74 D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      |+.+.   ...++..++....  ..++++||+++.|++++|++|...+.
T Consensus       171 Dl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        171 DIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             cCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence            98542   2445555555443  46999999999999999999987653

>cd01889 SelB_euk SelB subfamily

Probab=99.43  E-value=1.4e-12  Score=94.11  Aligned_cols=111  Identities=16%  Similarity=0.031  Sum_probs=72.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--   81 (163)
                      +..+.+||  |||+..+........+.+|++++|+|+.+.........+.  +...  .+.|+++++||+|+......  
T Consensus        67 ~~~~~i~D--tpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~  140 (192)
T cd01889          67 NLQITLVD--CPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERER  140 (192)
T ss_pred             CceEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHH
Confidence            34556666  9999776443334566789999999998754433322222  1122  24799999999998642211  


Q ss_pred             CHHHHHHHH-H------HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFA-K------ENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        82 ~~~~~~~~~-~------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ..++..... .      ..+++++++||+++.|+++++++|..++.
T Consensus       141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            122222211 1      13567999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=2.5e-12  Score=103.30  Aligned_cols=108  Identities=19%  Similarity=0.168  Sum_probs=83.7

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE   87 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~   87 (163)
                      .|-++||||++.|..|+..-.+-+|++|||++++|.    -..+.++.+...+..++|++++.||+|.++   ..+....
T Consensus        56 ~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG----v~pQTiEAI~hak~a~vP~iVAiNKiDk~~---~np~~v~  128 (509)
T COG0532          56 GITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG----VMPQTIEAINHAKAAGVPIVVAINKIDKPE---ANPDKVK  128 (509)
T ss_pred             eEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC----cchhHHHHHHHHHHCCCCEEEEEecccCCC---CCHHHHH
Confidence            455567999999999999999999999999999985    223344445444446799999999999864   3455555


Q ss_pred             HHHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           88 QFAKENGL---------LFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        88 ~~~~~~~~---------~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      .-..++|+         .++++||++|+|+.+|+..++-....+
T Consensus       129 ~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         129 QELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             HHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence            54555553         489999999999999999988776666

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.43  E-value=1.2e-12  Score=90.46  Aligned_cols=101  Identities=20%  Similarity=0.135  Sum_probs=74.1

Q ss_pred             cceeeEeeecccchhhhhh--------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~--------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +.++.+||  |||...+..        ....++..+|++++|+|+++..+......+..      ....|+++++||+|+
T Consensus        48 ~~~~~i~D--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~  119 (157)
T cd04164          48 GIPVRLID--TAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDL  119 (157)
T ss_pred             CEEEEEEE--CCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhc
Confidence            34677777  999755432        22346789999999999998776665433322      245899999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+....       .......+++++||+++.|+++++++|...+
T Consensus       120 ~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         120 LPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             CCcccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            654332       3344467799999999999999999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.4e-13  Score=96.99  Aligned_cols=112  Identities=30%  Similarity=0.519  Sum_probs=94.0

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+..||  |+|+|++..+...|+-.+.++|++||++..-++..+..|.+.+.+.+ .++|+++.|||.|..+. .+ ..
T Consensus        59 irf~~wd--tagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r-~~-k~  133 (216)
T KOG0096|consen   59 IRFNVWD--TAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKAR-KV-KA  133 (216)
T ss_pred             EEEEeee--cccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceecccc-cc-cc
Confidence            4555566  99999999999999999999999999999999999999999998877 45999999999997543 22 22


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +...+.+..++.++++||+++.|++..|-++.+.+.-
T Consensus       134 k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  134 KPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             ccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence            3334555667889999999999999999999987754

>PRK11058 GTPase HflX; Provisional

Probab=99.41  E-value=4e-12  Score=101.99  Aligned_cols=110  Identities=15%  Similarity=0.088  Sum_probs=77.0

Q ss_pred             eeeEeeecccchhhh--hhch------hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            6 ESFFWSLLQAGQESF--RSIT------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~--~~~~------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      ++.|||  |+|..+.  ..++      ...+++||++|+|+|++++.++..+..|...+......+.|+++|+||+|+..
T Consensus       246 ~~~l~D--TaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~  323 (426)
T PRK11058        246 ETVLAD--TVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD  323 (426)
T ss_pred             eEEEEe--cCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence            666777  9997432  2222      23468999999999999988887775555545444334689999999999854


Q ss_pred             CCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           78 RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        78 ~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ...   ....  ....+.+ ++++||++|.|++++++++...+...
T Consensus       324 ~~~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        324 DFE---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSGE  364 (426)
T ss_pred             chh---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence            211   1111  1123555 58899999999999999999887543

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.40  E-value=4.2e-12  Score=103.02  Aligned_cols=117  Identities=15%  Similarity=0.076  Sum_probs=80.7

Q ss_pred             cceeeEeeecccchh----hhhhc---hhhhccCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhcC-----------
Q 031249            4 SQESFFWSLLQAGQE----SFRSI---TRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHAN-----------   61 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e----~~~~~---~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~-----------   61 (163)
                      +..+.|||  |||.-    ....+   .-.++.++|++|+|+|+++.    +.+.++..+..++..+..           
T Consensus       205 ~~~f~laD--tPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l  282 (500)
T PRK12296        205 DTRFTVAD--VPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDL  282 (500)
T ss_pred             CeEEEEEE--CCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhh
Confidence            45677777  89952    11122   22356789999999999753    355566666666654431           


Q ss_pred             CCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           62 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        62 ~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ..+|++||+||+|+++...+ .+.........+++++++||+++.|+++++.+|.+.+....
T Consensus       283 ~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        283 AERPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             cCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            35899999999999653322 22233334455788999999999999999999988876644

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.40  E-value=5e-12  Score=104.86  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=75.6

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc---
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA---   80 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~---   80 (163)
                      +.|||  |||++.|..++..+++.+|+++||||+++   +++++.+.    .+..   .++|+++++||+|+.....   
T Consensus        71 l~~iD--TpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~  141 (590)
T TIGR00491        71 LLFID--TPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHE  141 (590)
T ss_pred             EEEEE--CCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhcc
Confidence            56666  99999999999999999999999999987   55555442    2222   2589999999999853110   


Q ss_pred             -cC--------HHHH------------HHHHH------------Hc--CCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           81 -VS--------KEEG------------EQFAK------------EN--GLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        81 -v~--------~~~~------------~~~~~------------~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                       .+        ....            .++.+            .+  ..+++++||++|+|+++++.++.....+.+
T Consensus       142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l  219 (590)
T TIGR00491       142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL  219 (590)
T ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence             00        0000            01111            12  256999999999999999998876555433

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.40  E-value=3.3e-12  Score=106.15  Aligned_cols=109  Identities=21%  Similarity=0.167  Sum_probs=80.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR   79 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~   79 (163)
                      +..+.|||  |||+++|...+..++.++|++++|+|+++   +++++.+.    .+..   .++| +++++||+|+.+..
T Consensus        49 ~~~v~~iD--tPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~  119 (581)
T TIGR00475        49 DYRLGFID--VPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEE  119 (581)
T ss_pred             CEEEEEEE--CCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHH
Confidence            34566777  99999999888889999999999999988   45554432    2222   2466 99999999996533


Q ss_pred             cc--CHHHHHHHHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           80 AV--SKEEGEQFAKEN----GLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        80 ~v--~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .+  ..+++..+++.+    +.+++++||+++.|+++++..+...+..
T Consensus       120 ~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       120 EIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            22  123455555554    4679999999999999999988765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.40  E-value=2.9e-12  Score=92.18  Aligned_cols=107  Identities=23%  Similarity=0.183  Sum_probs=75.4

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--CHHH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEE   85 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~~~~   85 (163)
                      .+..+||||+.+|.......++.+|++|+|+|+.+..... ....+..+...   ++|+++++||+|+... ..  ..++
T Consensus        71 ~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~-~~~~~~~~  145 (188)
T PF00009_consen   71 KITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEK-ELEEIIEE  145 (188)
T ss_dssp             EEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHH-HHHHHHHH
T ss_pred             ceeecccccccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhh-hHHHHHHH
Confidence            4444459999999998888899999999999998753322 33445555554   4889999999998621 11  0112


Q ss_pred             HH-HHHHHc------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           86 GE-QFAKEN------GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        86 ~~-~~~~~~------~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .. .+.+..      .++++++||.+|.|+.++++.+.+.+
T Consensus       146 ~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  146 IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            22 333333      24699999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd00880 Era_like Era (E

Probab=99.40  E-value=2.3e-12  Score=88.51  Aligned_cols=109  Identities=20%  Similarity=0.129  Sum_probs=76.9

Q ss_pred             cceeeEeeecccchhhhhh-------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRS-------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~-------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ...+.+||  |+|...+..       .+..+++.+|++++|+|..+..+..... ++.....   ...|+++++||.|+.
T Consensus        44 ~~~~~~~D--t~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~  117 (163)
T cd00880          44 LGPVVLID--TPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLL  117 (163)
T ss_pred             CCcEEEEE--CCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccC
Confidence            34677777  999766543       3445889999999999999877666544 3344333   458999999999986


Q ss_pred             CCCccCHH---HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           77 HRRAVSKE---EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        77 ~~~~v~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ....+...   .........+.+++++|++++.|++++++++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         118 PEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             ChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            53322211   1122233345679999999999999999999765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01895 EngA2 EngA2 subfamily

Probab=99.37  E-value=1.3e-11  Score=86.52  Aligned_cols=110  Identities=20%  Similarity=0.109  Sum_probs=73.9

Q ss_pred             ccceeeEeeecccchhhh----------hhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESF----------RSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~----------~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      .+.++.+||  |||..+.          ..+. ..+++++|++++|+|++++.+.... .++..+..   .+.|+++++|
T Consensus        48 ~~~~~~iiD--tpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~n  121 (174)
T cd01895          48 DGKKYTLID--TAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVN  121 (174)
T ss_pred             CCeeEEEEE--CCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEe
Confidence            345677888  9996332          2111 2356799999999999988766543 33344333   2489999999


Q ss_pred             CCCCCCCCccCHHHHHH-HHHHc----CCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVSKEEGEQ-FAKEN----GLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      |+|+.+......++... +.+..    ..+++++||+++.|++++++.+.+.
T Consensus       122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         122 KWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            99986543222233222 22333    3579999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.37  E-value=3.5e-12  Score=102.64  Aligned_cols=106  Identities=20%  Similarity=0.097  Sum_probs=72.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHH--HHHHhcCCCCeEEEEeeCCCCCCCCc-
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE--DARQHANPNMSIMLVGNKCDLAHRRA-   80 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~--~l~~~~~~~~p~ilv~nK~D~~~~~~-   80 (163)
                      +..+.|||  |||+++|.......+..+|++++|+|+++.+++.. .++..  .+.... ...|+++++||+|+.+... 
T Consensus        84 ~~~i~iiD--tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~  159 (426)
T TIGR00483        84 KYEVTIVD--CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYDEE  159 (426)
T ss_pred             CeEEEEEE--CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCccHH
Confidence            45667777  99999997766667899999999999998754321 11111  122222 2357999999999864211 


Q ss_pred             ---cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 031249           81 ---VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        81 ---v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~  113 (163)
                         ...+++..+++..+     ++++++||+++.|+.+++.
T Consensus       160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence               11345566676665     4699999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.37  E-value=5.1e-12  Score=101.09  Aligned_cols=111  Identities=22%  Similarity=0.179  Sum_probs=76.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--C
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~   82 (163)
                      ..+.|||  |||+++|...+...+..+|++++|+|+++........+.+..+...  ...|+++++||+|+.+....  .
T Consensus        80 ~~i~liD--tPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        80 RRVSFVD--APGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             cEEEEEE--CCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHH
Confidence            4566776  9999999988888888999999999998642111222223333222  12578999999998653211  1


Q ss_pred             HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+++..+....   +.+++++||+++.|+++++++|...+
T Consensus       156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            23344444433   56799999999999999999997654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.36  E-value=3e-12  Score=85.14  Aligned_cols=66  Identities=38%  Similarity=0.658  Sum_probs=55.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHH---HHHHHHhcCCCCeEEEEeeCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+++||  ++|++.+...+..++..+|++++|||+++..||+.+..+   +..+.... .++|++||+||.|
T Consensus        51 ~~~~~d--~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   51 SLQFWD--FGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEE--ESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EEEEEe--cCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            467888  899999999888889999999999999999999987554   55555533 5599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.32  E-value=2.8e-11  Score=96.13  Aligned_cols=114  Identities=16%  Similarity=0.054  Sum_probs=81.1

Q ss_pred             eeeEeeecccchhhh-------hhchhhhccCCcEEEEEEECC---ChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031249            6 ESFFWSLLQAGQESF-------RSITRSYYRGAAGALLVYDIT---RRETFNHLSSWLEDARQHAN--PNMSIMLVGNKC   73 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~-------~~~~~~~~~~ad~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~   73 (163)
                      .+.|+|  |||..+-       ......+++++|++++|+|++   +.+.++.+..|++++.....  ...|++||+||+
T Consensus       208 ~i~~vD--tPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKi  285 (390)
T PRK12298        208 SFVVAD--IPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKI  285 (390)
T ss_pred             EEEEEe--CCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCC
Confidence            466666  9996431       111223678999999999988   45667777788888876532  358999999999


Q ss_pred             CCCCCCccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           74 DLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        74 D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |+.....+ .+....+.+..+  .+++++||+++.+++++++.|.+.+.+.
T Consensus       286 Dl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        286 DLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             ccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            98653332 233444555444  3689999999999999999998877543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.32  E-value=2.3e-11  Score=97.83  Aligned_cols=108  Identities=18%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             ccceeeEeeecccch--------hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQ--------ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~--------e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      ++..+.|||  |||.        +.+...+..+++.+|+++||+|+.+..+..+ ..+.+.+++.   ++|+++|+||+|
T Consensus        45 ~~~~~~liD--TpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D  118 (429)
T TIGR03594        45 GGREFILID--TGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKID  118 (429)
T ss_pred             CCeEEEEEE--CCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECcc
Confidence            355677777  9995        5566677788999999999999987544433 1233333332   489999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +.+....    ... ....++ +++++||.++.|+.++++++...+..
T Consensus       119 ~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       119 GKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             CCccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence            8653321    112 234566 69999999999999999999877643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.30  E-value=3.1e-11  Score=102.66  Aligned_cols=118  Identities=19%  Similarity=0.143  Sum_probs=80.0

Q ss_pred             ccceeeEeeecccch----------hhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQ----------ESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~----------e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      .+..+.|||  |||.          +.|..+. ..+++.+|++++|+|+++..++.+.. ++..+..   .++|+++|+|
T Consensus       496 ~~~~~~liD--TaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~N  569 (712)
T PRK09518        496 DGEDWLFID--TAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFN  569 (712)
T ss_pred             CCCEEEEEE--CCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence            456777887  9995          3343333 33578999999999999987777653 4444433   3589999999


Q ss_pred             CCCCCCCCccCHHHHHH-HHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249           72 KCDLAHRRAVSKEEGEQ-FAKEN----GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  128 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~  128 (163)
                      |+|+.+...  .+.... +...+    ..+++++||+++.|++++|+.+.+..........+
T Consensus       570 K~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T  629 (712)
T PRK09518        570 KWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPT  629 (712)
T ss_pred             chhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence            999864211  122222 22221    24579999999999999999998887664443333

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.30  E-value=1.7e-11  Score=101.94  Aligned_cols=111  Identities=17%  Similarity=0.143  Sum_probs=80.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc-C
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-S   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v-~   82 (163)
                      +..+.|||  |||+++|...+..+++.+|++++|+|+.+.. ......|+..+...   ++|+++++||+|+.+.+.. .
T Consensus        63 ~~kinlID--TPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v  136 (594)
T TIGR01394        63 GTKINIVD--TPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEV  136 (594)
T ss_pred             CEEEEEEE--CCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHH
Confidence            45566666  9999999999999999999999999998642 33445566666553   4899999999998643211 1


Q ss_pred             HHHHHHHHH-------HcCCeEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAK-------ENGLLFLEASARTAQ----------NVEEAFIKTAAKIL  120 (163)
Q Consensus        83 ~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~lf~~l~~~~~  120 (163)
                      ..+...+..       ...++++++||+++.          ++..+|+.++..+.
T Consensus       137 ~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       137 VDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             HHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            233333332       234679999999995          78888888876653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.30  E-value=2.4e-11  Score=97.29  Aligned_cols=106  Identities=23%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+.|||  |||+++|..........+|++++|+|+++.    ++.+.+    ..+...  ...|+++|+||+|+.+....
T Consensus        86 ~i~liD--tPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l----~~l~~~--~i~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         86 RVSFVD--APGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL----MALDII--GIKNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             EEEEEE--CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH----HHHHHc--CCCcEEEEEEeeccccchhH
Confidence            466666  999999876555556678999999999853    333322    222222  12478999999998653221


Q ss_pred             --CHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           82 --SKEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        82 --~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                        ..+++..+++..   +.+++++||+++.|++++++.|...+
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence              123344444332   46799999999999999999987654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.30  E-value=2.8e-11  Score=97.55  Aligned_cols=102  Identities=21%  Similarity=0.192  Sum_probs=72.0

Q ss_pred             ccceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            3 FSQESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      ++..+.|||  |||.+.        +......+++.+|++|||+|+.+..+..+  +..|+.   +.   +.|+++|+||
T Consensus        47 ~~~~~~liD--T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK  118 (435)
T PRK00093         47 LGREFILID--TGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNK  118 (435)
T ss_pred             CCcEEEEEE--CCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEEC
Confidence            355677787  999876        33345667899999999999987543322  223332   22   5899999999


Q ss_pred             CCCCCCCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHH
Q 031249           73 CDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        73 ~D~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      +|+.+.    ......+ ...++. ++++||+++.|+.++|+.++.
T Consensus       119 ~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        119 VDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             ccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            997431    1222222 345664 899999999999999999987

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.29  E-value=2e-11  Score=98.40  Aligned_cols=112  Identities=22%  Similarity=0.159  Sum_probs=75.9

Q ss_pred             ccceeeEeeecccchh----------hhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQE----------SFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e----------~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      .+..+.+||  |||..          .|..+. ..+++.+|++|+|+|+++..+..+. .++..+.+   .++|+++++|
T Consensus       219 ~~~~~~lvD--T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~N  292 (435)
T PRK00093        219 DGQKYTLID--TAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVN  292 (435)
T ss_pred             CCeeEEEEE--CCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEE
Confidence            455678887  99953          333222 2378899999999999987766654 33344433   3489999999


Q ss_pred             CCCCCCCCccCHHHHH-HHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVSKEEGE-QFAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~-~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |+|+.+...  .++.. .+...    ...+++++||+++.|++++|+.+.+.....
T Consensus       293 K~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        293 KWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             CccCCCHHH--HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999864221  11221 12222    246799999999999999999988766544

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.29  E-value=2.4e-11  Score=88.88  Aligned_cols=104  Identities=17%  Similarity=0.081  Sum_probs=68.7

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc-
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v-   81 (163)
                      ++.++.|||  |||+++|...+...++.+|++|+|+|+++...-. ....+..+.. . ...++|+|+||+|+.+.... 
T Consensus        75 ~~~~~~liD--TpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~-~-~~~~iIvviNK~D~~~~~~~~  149 (208)
T cd04166          75 PKRKFIIAD--TPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL-L-GIRHVVVAVNKMDLVDYSEEV  149 (208)
T ss_pred             CCceEEEEE--CCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH-c-CCCcEEEEEEchhcccCCHHH
Confidence            345677777  9999998776677889999999999998753211 1122222222 2 12457889999998642211 


Q ss_pred             ---CHHHHHHHHHHcCC---eEEEEcCCCCCCHHHH
Q 031249           82 ---SKEEGEQFAKENGL---LFLEASARTAQNVEEA  111 (163)
Q Consensus        82 ---~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l  111 (163)
                         ...+...+++.+++   +++++||+++.|+.+.
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence               12344555666664   4899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04163 Era Era subfamily

Probab=99.28  E-value=4.4e-11  Score=83.00  Aligned_cols=108  Identities=19%  Similarity=0.124  Sum_probs=71.5

Q ss_pred             ceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            5 QESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ..+.+||  |||...        +.......+..+|++++|+|+++..+.. ...++..+...   +.|+++++||+|+.
T Consensus        51 ~~~~liD--tpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---~~~~iiv~nK~Dl~  124 (168)
T cd04163          51 AQIIFVD--TPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS---KTPVILVLNKIDLV  124 (168)
T ss_pred             eEEEEEE--CCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh---CCCEEEEEEchhcc
Confidence            3456666  999543        2234455788999999999999862111 12233444433   47999999999986


Q ss_pred             CCCccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           77 HRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        77 ~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .......+....+....+ .+++++|++++.+++++++.|.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            322222233333444442 579999999999999999998654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.28  E-value=6.2e-11  Score=85.33  Aligned_cols=108  Identities=16%  Similarity=0.149  Sum_probs=71.8

Q ss_pred             eeeEeeecccc----------hhhhhhchhhhccCC---cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            6 ESFFWSLLQAG----------QESFRSITRSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         6 ~~~l~d~Dt~G----------~e~~~~~~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      .+.|||  |||          ++++..+...+++.+   +++++|+|.++..+..+. .+.+.+..   .+.|+++++||
T Consensus        71 ~l~l~D--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK  144 (196)
T PRK00454         71 KLRLVD--LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTK  144 (196)
T ss_pred             eEEEeC--CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEEC
Confidence            455566  999          466666777777654   678899998775443321 12222322   35899999999


Q ss_pred             CCCCCCCccC--HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           73 CDLAHRRAVS--KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        73 ~D~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .|+.+..+..  .+++.........+++++||+++.|++++|+.|...+
T Consensus       145 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        145 ADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            9986532221  1223344444467899999999999999999987654

>PRK00089 era GTPase Era; Reviewed

Probab=99.27  E-value=5.7e-11  Score=91.07  Aligned_cols=109  Identities=18%  Similarity=0.107  Sum_probs=72.3

Q ss_pred             eeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031249            7 SFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR   78 (163)
Q Consensus         7 ~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~   78 (163)
                      .++..+||||...        +.......+.++|++++|+|+++..+- ....+++.+..   .+.|+++|+||+|+...
T Consensus        53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~  128 (292)
T PRK00089         53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKD  128 (292)
T ss_pred             ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCC
Confidence            3444455999533        223345577899999999999883211 11223333332   35899999999999643


Q ss_pred             CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           79 RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        79 ~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +.........+.+..+ .+++++||+++.|++++++++...+
T Consensus       129 ~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l  170 (292)
T PRK00089        129 KEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence            2222334445555444 4599999999999999999998765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.27  E-value=3.8e-11  Score=102.11  Aligned_cols=107  Identities=17%  Similarity=0.095  Sum_probs=73.3

Q ss_pred             cceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +..+.+||  |||.+.        +......+++.+|++|||+|+++..+..+ ..|...++.   .++|+++|+||+|+
T Consensus       322 ~~~~~liD--T~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~  395 (712)
T PRK09518        322 GTDFKLVD--TGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDD  395 (712)
T ss_pred             CEEEEEEe--CCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECccc
Confidence            45677777  999653        34455668899999999999986422221 234555543   35899999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ....    .....+. ..++ ..+++||+++.||.++|++++..+..
T Consensus       396 ~~~~----~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        396 QASE----YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             ccch----hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence            5421    1122221 2233 36789999999999999999887743

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.26  E-value=8.7e-11  Score=98.18  Aligned_cols=107  Identities=17%  Similarity=0.142  Sum_probs=75.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR   79 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~   79 (163)
                      +..+.|||  |||+++|.......+.++|++++|+|+++   +++.+.+    ..+...   ++| ++||+||+|+.++.
T Consensus        50 g~~i~~ID--tPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~  120 (614)
T PRK10512         50 GRVLGFID--VPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEA  120 (614)
T ss_pred             CcEEEEEE--CCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHH
Confidence            44567777  99999998777777899999999999987   3343332    223222   245 57999999986532


Q ss_pred             ccC--HHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           80 AVS--KEEGEQFAKENG---LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        80 ~v~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+.  .+++..++...+   .+++++||++|.|++++++.|....
T Consensus       121 ~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        121 RIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            221  234445555444   5699999999999999999987543

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1.2e-10  Score=93.88  Aligned_cols=110  Identities=16%  Similarity=0.068  Sum_probs=83.6

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE   87 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~   87 (163)
                      .+.++||||+..|..|+..-.+-+|++++|+.++|.    -..+.++.+......++|+|+.+||+|.++   -+++.+.
T Consensus       202 ~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~  274 (683)
T KOG1145|consen  202 SITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG----VMPQTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVK  274 (683)
T ss_pred             EEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC----ccHhHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHH
Confidence            345566999999999999999999999999999885    233344455555556799999999999754   4556655


Q ss_pred             HHHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           88 QFAKENGL---------LFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        88 ~~~~~~~~---------~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      .-+...|+         .++++||++|+|++.|-+.++-...-+..
T Consensus       275 ~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdL  320 (683)
T KOG1145|consen  275 RELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDL  320 (683)
T ss_pred             HHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhc
Confidence            44444443         48999999999999999888766554443

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.24  E-value=3.4e-11  Score=96.90  Aligned_cols=106  Identities=20%  Similarity=0.075  Sum_probs=69.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc--
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--   80 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--   80 (163)
                      +..+.|||  |||+++|.......++.+|++|+|+|+++...+.. ...++..+...  ...|+++++||+|+.+...  
T Consensus        83 ~~~i~liD--tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         83 KYYFTIVD--CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             CeEEEEEE--CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHH
Confidence            44566666  99999987655566789999999999987211211 12222223222  1247999999999864211  


Q ss_pred             --cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 031249           81 --VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        81 --v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~  113 (163)
                        ...+++..+++..+     .+++++||++|.|+++++.
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence              11245555665555     4599999999999988653

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.24  E-value=1.5e-10  Score=96.35  Aligned_cols=106  Identities=19%  Similarity=0.212  Sum_probs=74.4

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc---
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA---   80 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~---   80 (163)
                      +.|||  |||+++|..++...++.+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+...-.   
T Consensus        73 i~~iD--TPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~  143 (586)
T PRK04004         73 LLFID--TPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTE  143 (586)
T ss_pred             EEEEE--CCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhc
Confidence            56777  99999999999999999999999999987   66666543    2222   3589999999999842100   


Q ss_pred             -cC--------HH-----------HHHHHHHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           81 -VS--------KE-----------EGEQFAKEN---------------GLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        81 -v~--------~~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                       ..        ..           +........               .++++++||.++.|+.+++..+.....+
T Consensus       144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~  219 (586)
T PRK04004        144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR  219 (586)
T ss_pred             CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence             00        00           011111211               2468999999999999999988755443

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.23  E-value=8.4e-11  Score=85.75  Aligned_cols=72  Identities=15%  Similarity=0.257  Sum_probs=58.4

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCC-cEEEEEEECCCh-HHHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGA-AGALLVYDITRR-ETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~a-d~~i~v~d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~ilv~nK~D~~~   77 (163)
                      +..++|||  |||++++..++..+++++ +++|||+|+.+. .++..+..|+..+...   ..+.+|+++++||+|+..
T Consensus        47 ~~~~~l~D--~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          47 GKKFRLVD--VPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CceEEEEE--CCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            45677888  999999999999999999 999999999987 6777777766554322   125799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.22  E-value=4.2e-11  Score=88.28  Aligned_cols=103  Identities=22%  Similarity=0.160  Sum_probs=66.5

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      .+..+.+||  |||+.+|...+...++.+|++|+|+|+++...   |.   .....+..... . ...|+++++||+|+.
T Consensus        75 ~~~~i~liD--tpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~iiivvNK~Dl~  150 (219)
T cd01883          75 EKYRFTILD--APGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-L-GVKQLIVAVNKMDDV  150 (219)
T ss_pred             CCeEEEEEE--CCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-c-CCCeEEEEEEccccc
Confidence            355667777  99999888777777889999999999987421   11   11222222222 2 236899999999986


Q ss_pred             CC--CccC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 031249           77 HR--RAVS----KEEGEQFAKENG-----LLFLEASARTAQNVE  109 (163)
Q Consensus        77 ~~--~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  109 (163)
                      ..  ....    .+++..+....+     .+++++||++|.|++
T Consensus       151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            31  1111    122333344443     459999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK10218 GTP-binding protein; Provisional

Probab=99.21  E-value=1.1e-10  Score=97.18  Aligned_cols=111  Identities=14%  Similarity=0.035  Sum_probs=75.8

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc-c
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-V   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~-v   81 (163)
                      .+..+.|||  |||+.+|...+..+++.+|++|+|+|+++..... ...++..+..   .++|.++++||+|+...+. -
T Consensus        66 ~~~~inliD--TPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~  139 (607)
T PRK10218         66 NDYRINIVD--TPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDW  139 (607)
T ss_pred             CCEEEEEEE--CCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhH
Confidence            345667777  9999999999999999999999999998753322 2334444443   3488999999999864211 1


Q ss_pred             CHHHHHHHHHH-------cCCeEEEEcCCCCC----------CHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKE-------NGLLFLEASARTAQ----------NVEEAFIKTAAKI  119 (163)
Q Consensus        82 ~~~~~~~~~~~-------~~~~~~~~Sa~~~~----------~i~~lf~~l~~~~  119 (163)
                      ..+++..+...       ..++++.+||.+|.          ++..+|+.++..+
T Consensus       140 vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        140 VVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             HHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            12233333211       34679999999998          4666666655544

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.21  E-value=2.2e-10  Score=85.45  Aligned_cols=67  Identities=18%  Similarity=0.149  Sum_probs=52.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      +..+.|||  |||+.+|...+..+++.+|++++|+|+++.... ....++..+...   ++|+++++||+|+.
T Consensus        63 ~~~i~liD--TPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          63 DTKVNLID--TPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             CEEEEEEe--CCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            44566666  999999999999999999999999999886443 234555555443   48999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.20  E-value=1e-10  Score=80.15  Aligned_cols=99  Identities=21%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             eeecccc----hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249           10 WSLLQAG----QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus        10 ~d~Dt~G----~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      +.+||||    ...|+.-+.....+||.+++|.|++++.+.-.     ..+...  ...|+|-|+||+|+... ....+.
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~  110 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIER  110 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHH
Confidence            4567999    46666666777789999999999998754322     111111  24799999999999732 346788


Q ss_pred             HHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHH
Q 031249           86 GEQFAKENGLL-FLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        86 ~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~  116 (163)
                      ++++++..|+. +|++|+.+++||+++.+.|-
T Consensus       111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            88899999986 89999999999999998873

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.20  E-value=4.8e-11  Score=83.28  Aligned_cols=104  Identities=21%  Similarity=0.237  Sum_probs=70.5

Q ss_pred             ccceeeEeeecccchhhh------hhchhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESF------RSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~------~~~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+..+.|+|  +||.-.+      ..+...++  ...|++|+|.|+++.+   .-.....++.+.   ++|+++++||+|
T Consensus        45 ~~~~~~lvD--lPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D  116 (156)
T PF02421_consen   45 GDQQVELVD--LPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMD  116 (156)
T ss_dssp             TTEEEEEEE------SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHH
T ss_pred             cCceEEEEE--CCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHH
Confidence            356777777  8994222      22344444  6899999999998753   223445555554   499999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  115 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l  115 (163)
                      ...++.+.. +...+.+..+++++++||++++|++++++.+
T Consensus       117 ~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  117 EAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             HHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             HHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            765444432 3566777889999999999999999998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.20  E-value=1.6e-10  Score=87.17  Aligned_cols=114  Identities=17%  Similarity=0.092  Sum_probs=77.0

Q ss_pred             cceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      ..+.|+..+||||..+        ........+.++|+++||.|+++...-. ....++.++.   .+.|+++++||+|.
T Consensus        51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~  126 (298)
T COG1159          51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDK  126 (298)
T ss_pred             cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEcccc
Confidence            3477888888999432        2233455678999999999998753221 1234444544   34799999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..++.........+.....+ .++++||+++.|++.+.+.+..++.+
T Consensus       127 ~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         127 VKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             CCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            66544212333333333343 49999999999999999888766543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.19  E-value=4.2e-10  Score=98.10  Aligned_cols=106  Identities=25%  Similarity=0.284  Sum_probs=74.0

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-   82 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-   82 (163)
                      +.|||  |||++.|..+....+..+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+....... 
T Consensus       528 i~fiD--TPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~  598 (1049)
T PRK14845        528 LLFID--TPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISE  598 (1049)
T ss_pred             EEEEE--CCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCcccccccc
Confidence            67777  99999999988888999999999999987   55555443    2332   247999999999985321110 


Q ss_pred             ---------------HHHHH----HH---HHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 ---------------KEEGE----QF---AKEN---------------GLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ---------------~~~~~----~~---~~~~---------------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                                     ..+..    .+   ..+.               .++++++||++|+|+++++..|......
T Consensus       599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence                           00110    01   1111               2468999999999999999888655444

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.18  E-value=1.1e-10  Score=83.25  Aligned_cols=98  Identities=16%  Similarity=0.195  Sum_probs=65.0

Q ss_pred             eeeEeeecccch----------hhhhhchhhhccC---CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            6 ESFFWSLLQAGQ----------ESFRSITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         6 ~~~l~d~Dt~G~----------e~~~~~~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      .+.+||  |||.          +.+..+...|++.   +|++++|+|+++..+.... .++..+..   .++|+++++||
T Consensus        65 ~~~liD--tpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK  138 (179)
T TIGR03598        65 GFRLVD--LPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTK  138 (179)
T ss_pred             cEEEEe--CCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEEC
Confidence            567787  9993          4455566666664   5899999999875544443 23333433   25899999999


Q ss_pred             CCCCCCCcc--CHHHHHHHHHHcC--CeEEEEcCCCCCCHH
Q 031249           73 CDLAHRRAV--SKEEGEQFAKENG--LLFLEASARTAQNVE  109 (163)
Q Consensus        73 ~D~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  109 (163)
                      +|+.+....  ..++++..+...+  .+++++||++++|++
T Consensus       139 ~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       139 ADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            998643211  2344444555543  469999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01855 YqeH YqeH

Probab=99.16  E-value=2.8e-10  Score=81.97  Aligned_cols=96  Identities=22%  Similarity=0.137  Sum_probs=67.7

Q ss_pred             hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHH-----HH
Q 031249           18 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KE   92 (163)
Q Consensus        18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~-----~~   92 (163)
                      +.|..++..+++++|++++|+|+.+....     |...+.... .++|+++|+||+|+... .........+.     +.
T Consensus        22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~   94 (190)
T cd01855          22 DFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhh
Confidence            34678899999999999999999875421     222222222 45899999999998653 23334444343     23


Q ss_pred             cCC---eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           93 NGL---LFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        93 ~~~---~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .+.   +++++||+++.|++++++.+...+.
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            333   5899999999999999999987763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.16  E-value=7.9e-10  Score=82.30  Aligned_cols=109  Identities=24%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             CccceeeEeeecccchhhhh-------hchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHH-----------------
Q 031249            2 FFSQESFFWSLLQAGQESFR-------SITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDA-----------------   56 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~-------~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l-----------------   56 (163)
                      +++..+++||  |||..+..       .....+++++|++++|+|+++.. ....+...++..                 
T Consensus        44 ~~~~~i~l~D--tpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~  121 (233)
T cd01896          44 YKGAKIQLLD--LPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKK  121 (233)
T ss_pred             ECCeEEEEEE--CCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEe
Confidence            3567788888  99974332       12345789999999999998755 333332222210                 


Q ss_pred             ------------------------HHhc---------------------C---CCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249           57 ------------------------RQHA---------------------N---PNMSIMLVGNKCDLAHRRAVSKEEGEQ   88 (163)
Q Consensus        57 ------------------------~~~~---------------------~---~~~p~ilv~nK~D~~~~~~v~~~~~~~   88 (163)
                                              .++.                     .   ..+|+++|+||+|+.     ..++...
T Consensus       122 ~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~  196 (233)
T cd01896         122 KGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDL  196 (233)
T ss_pred             cCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHH
Confidence                                    0000                     0   126999999999984     3455555


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           89 FAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++.  ..+++++||+++.|++++|+.+.+.+
T Consensus       197 ~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         197 LAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             Hhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            544  34589999999999999999998754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.14  E-value=8.6e-10  Score=79.97  Aligned_cols=99  Identities=19%  Similarity=0.158  Sum_probs=66.9

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccC---
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---   82 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~---   82 (163)
                      .++..+||||+.+|.......+..+|++++|+|+...-.- ....++..+...   ++| +|+++||+|+....+..   
T Consensus        65 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~  140 (195)
T cd01884          65 RHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELV  140 (195)
T ss_pred             eEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHH
Confidence            4455566999999887777788899999999999864221 223344444443   366 77899999986422211   


Q ss_pred             HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 031249           83 KEEGEQFAKENG-----LLFLEASARTAQNVE  109 (163)
Q Consensus        83 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  109 (163)
                      .+++..+....+     .+++++||.+|.++.
T Consensus       141 ~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         141 EMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             HHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence            234555555544     569999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.14  E-value=5.6e-10  Score=95.39  Aligned_cols=108  Identities=12%  Similarity=0.108  Sum_probs=80.4

Q ss_pred             ccceeeEeeecccchhhhhhc----------hhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            3 FSQESFFWSLLQAGQESFRSI----------TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~----------~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      ++..+.+||  |||...+...          ...++  ..+|++++|+|.++.+..   ..+..++.+.   ++|+++++
T Consensus        48 ~~~~i~lvD--tPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVl  119 (772)
T PRK09554         48 TDHQVTLVD--LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVAL  119 (772)
T ss_pred             CceEEEEEE--CCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEE
Confidence            345677887  9998776432          23343  489999999999885432   2344555443   48999999


Q ss_pred             eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ||+|+.+.+.+ ..+...+.+..+++++++|+.++.|++++.+.+....
T Consensus       120 NK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        120 NMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            99998655444 3556778888999999999999999999998887654

>cd01859 MJ1464 MJ1464

Probab=99.10  E-value=3.2e-10  Score=79.13  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEE
Q 031249           20 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE   99 (163)
Q Consensus        20 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~   99 (163)
                      +..+++...+++|++|+|+|+.++..... ..+...+..   .++|+++|+||+|+.+....  .....+....+.++++
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            35577888899999999999987543332 122222222   35899999999998532111  1111233445678999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHH
Q 031249          100 ASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus       100 ~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999977654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.10  E-value=4.3e-10  Score=88.18  Aligned_cols=95  Identities=21%  Similarity=0.192  Sum_probs=70.2

Q ss_pred             hhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249           18 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL   96 (163)
Q Consensus        18 e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~   96 (163)
                      +|-..+.+..+.++|.+++|+|+.++. .+..+..|+..+..   .++|++||+||+|+.+..+.  +........+++.
T Consensus        77 pR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~  151 (352)
T PRK12289         77 PRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQ  151 (352)
T ss_pred             ccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCe
Confidence            344556677899999999999998765 45556777766633   45899999999999542211  2222333567889


Q ss_pred             EEEEcCCCCCCHHHHHHHHHH
Q 031249           97 FLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        97 ~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ++++||.++.|++++++.+..
T Consensus       152 v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        152 PLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEEEEcCCCCCHHHHhhhhcc
Confidence            999999999999999988854

>cd04167 Snu114p Snu114p subfamily

Probab=99.10  E-value=3.8e-10  Score=82.79  Aligned_cols=65  Identities=25%  Similarity=0.227  Sum_probs=50.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      .+.|||  |||+++|...+..+++.+|++++|+|+++..++.. ..++..+..   .+.|+++++||+|+.
T Consensus        72 ~i~iiD--tpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          72 LFNIID--TPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEE--CCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            455555  99999998888999999999999999987765543 344444433   248999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK09866 hypothetical protein; Provisional

Probab=99.09  E-value=2e-09  Score=89.16  Aligned_cols=110  Identities=14%  Similarity=0.116  Sum_probs=73.4

Q ss_pred             eeeEeeecccchhh-----hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            6 ESFFWSLLQAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~-----~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      ..|+..+||||...     ...+....++++|+++||+|++...+..+ ....+.+.+.. ...|+++|+||+|+.++..
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence            34666677999643     23344557999999999999987544443 22344444432 2259999999999854322


Q ss_pred             cCHHHHHHHHH----HcCC---eEEEEcCCCCCCHHHHHHHHHH
Q 031249           81 VSKEEGEQFAK----ENGL---LFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        81 v~~~~~~~~~~----~~~~---~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      -..+....+..    ..++   .++++||+.|.|++.+++.+..
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            22344444432    2222   4999999999999999999876

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.09  E-value=2.4e-09  Score=79.29  Aligned_cols=105  Identities=18%  Similarity=0.085  Sum_probs=67.2

Q ss_pred             eeeEeeecccchhhhhhchhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-
Q 031249            6 ESFFWSLLQAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-   82 (163)
                      .+.|.  ||||+++|.......+  ..+|++++|+|++.... .....++..+...   ++|+++++||+|+.+..... 
T Consensus        85 ~i~li--DtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~~~  158 (224)
T cd04165          85 LVTFI--DLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANILQE  158 (224)
T ss_pred             EEEEE--ECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHHHH
Confidence            34454  5999999965433333  37899999999876533 2223444545443   48999999999985432211 


Q ss_pred             -HHHHHHHHHH--------------------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 031249           83 -KEEGEQFAKE--------------------------NGLLFLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        83 -~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~lf~~l~  116 (163)
                       .++...++..                          ...+++.+|+.+|.|++++...|.
T Consensus       159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence             1222222221                          123799999999999999887763

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.08  E-value=1.3e-09  Score=86.79  Aligned_cols=109  Identities=22%  Similarity=0.226  Sum_probs=84.0

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      |..+.|-.+||||+=.|..-....+..|.|+++|+|++..---+.+...|-.+..    +.-++-|+||+|++..   .+
T Consensus        73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~A---dp  145 (603)
T COG0481          73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAA---DP  145 (603)
T ss_pred             CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCC---CH
Confidence            4566777777999999998888889999999999999987544555555555543    4689999999999763   23


Q ss_pred             HHH-HHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHH
Q 031249           84 EEG-EQFAKENGLL---FLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        84 ~~~-~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +.. .++-.-.|++   .+.+||++|.||+++++.+++.+
T Consensus       146 ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         146 ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhC
Confidence            433 3444556765   89999999999999998887765

>PRK00098 GTPase RsgA; Reviewed

Probab=99.06  E-value=8.2e-10  Score=85.05  Aligned_cols=95  Identities=22%  Similarity=0.190  Sum_probs=68.9

Q ss_pred             hhhhhchhhhc-------cCCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH
Q 031249           18 ESFRSITRSYY-------RGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF   89 (163)
Q Consensus        18 e~~~~~~~~~~-------~~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~   89 (163)
                      +|...+++...       .++|++++|+|+.++.++.. +..|+..+..   .++|+++|+||+|+.+... ...+....
T Consensus        61 ~R~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~  136 (298)
T PRK00098         61 ERKNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLAL  136 (298)
T ss_pred             CCCceEECCCCccccceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHH
Confidence            44555555554       89999999999988765444 4667776654   3589999999999953221 12233444


Q ss_pred             HHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249           90 AKENGLLFLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        90 ~~~~~~~~~~~Sa~~~~~i~~lf~~l~  116 (163)
                      .+..+++++++||+++.|+++++..+.
T Consensus       137 ~~~~g~~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        137 YRAIGYDVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             HHHCCCeEEEEeCCCCccHHHHHhhcc
Confidence            556788999999999999999998763

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.8e-09  Score=87.28  Aligned_cols=108  Identities=23%  Similarity=0.246  Sum_probs=79.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+..+.-+||||+-+|..-....+.-+||+|+|+|++..---+....++..+..    +.-+|.|+||+|++..   .++
T Consensus       123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~a---dpe  195 (650)
T KOG0462|consen  123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSA---DPE  195 (650)
T ss_pred             CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCC---CHH
Confidence            345555556999999999999999999999999999986544444455555533    4678999999999763   234


Q ss_pred             HHH-HHHHHcCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGE-QFAKENGL---LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~-~~~~~~~~---~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ... ++-..+++   +++.+||++|.+++++++.+++.+
T Consensus       196 ~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  196 RVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             HHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence            433 23334444   489999999999999888887655

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.04  E-value=1.3e-09  Score=80.54  Aligned_cols=67  Identities=25%  Similarity=0.228  Sum_probs=50.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      .+++..|||||+++|......+++.+|++++|+|++...+... ...+.....   .++|+++++||+|+.
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence            3444444499999999999999999999999999998755543 233333333   347999999999974

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd00066 G-alpha G protein alpha subunit

Probab=99.04  E-value=2e-09  Score=83.53  Aligned_cols=119  Identities=19%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHAN-PNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~ilv~n   71 (163)
                      ++..+.+||  ++|+...+..|..++.+++++|||+|+++.          ..+.+....++.+..... .++|++|++|
T Consensus       159 ~~~~~~~~D--vgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N  236 (317)
T cd00066         159 KNLKFRMFD--VGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN  236 (317)
T ss_pred             cceEEEEEC--CCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence            456677777  899999999999999999999999999873          345555555555544332 5699999999


Q ss_pred             CCCCCCCC----------------ccCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRR----------------AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        72 K~D~~~~~----------------~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      |.|+.+++                .-..+.+..+...          ..+-+..++|.+..++..+|+.+...++...
T Consensus       237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            99963210                1123344333221          1122566789999999999999988887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.04  E-value=1.1e-09  Score=84.01  Aligned_cols=85  Identities=19%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             ccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCC
Q 031249           28 YRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  106 (163)
Q Consensus        28 ~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  106 (163)
                      +.++|.+++|+|++++. ++..+..|+..+...   ++|+++|+||+|+.++.  ............+++++++||+++.
T Consensus        76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g~  150 (287)
T cd01854          76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTGE  150 (287)
T ss_pred             EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCCc
Confidence            88999999999999887 788888888877653   48999999999985431  1112223344578899999999999


Q ss_pred             CHHHHHHHHHH
Q 031249          107 NVEEAFIKTAA  117 (163)
Q Consensus       107 ~i~~lf~~l~~  117 (163)
                      |+++++..|..
T Consensus       151 gi~~L~~~L~~  161 (287)
T cd01854         151 GLDELREYLKG  161 (287)
T ss_pred             cHHHHHhhhcc
Confidence            99999887753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.04  E-value=2.8e-09  Score=85.10  Aligned_cols=95  Identities=19%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccC--
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS--   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~--   82 (163)
                      .+.|||  |||+++|......-+..+|++++|+|+++...-. ...++..+...   ++| +|+++||+|+.+..+..  
T Consensus        76 ~i~~iD--tPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~  149 (394)
T PRK12736         76 HYAHVD--CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLEL  149 (394)
T ss_pred             EEEEEE--CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHH
Confidence            455555  9999998776666678899999999998642211 22333334332   467 67889999986432221  


Q ss_pred             -HHHHHHHHHHcC-----CeEEEEcCCCCC
Q 031249           83 -KEEGEQFAKENG-----LLFLEASARTAQ  106 (163)
Q Consensus        83 -~~~~~~~~~~~~-----~~~~~~Sa~~~~  106 (163)
                       .+++..++...+     .+++++||+++.
T Consensus       150 i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        150 VEMEVRELLSEYDFPGDDIPVIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence             234555555555     469999999983

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.02  E-value=1.4e-09  Score=88.06  Aligned_cols=98  Identities=19%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHH-------HHHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCC
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFN-------HLSSWLEDARQHANPNM-SIMLVGNKCDLAHRR   79 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~ilv~nK~D~~~~~   79 (163)
                      .+..+||||+++|.......+..+|++|+|+|+++. .|+       ...+++..+..   .++ ++|+++||+|+.+. 
T Consensus        86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~-  160 (447)
T PLN00043         86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP-  160 (447)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch-
Confidence            444455999999999888899999999999999872 232       22333333322   235 57889999997521 


Q ss_pred             cc-------CHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 031249           80 AV-------SKEEGEQFAKENG-----LLFLEASARTAQNVEE  110 (163)
Q Consensus        80 ~v-------~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  110 (163)
                      ..       ..+++..+++..+     ++++++||.+|.|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11       1345666777666     5599999999999854

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.02  E-value=2.8e-09  Score=85.13  Aligned_cols=95  Identities=19%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCccC--
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS--   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~~~~v~--   82 (163)
                      .+.|||  |||+++|..........+|++++|+|+++..... ..+++..+...   ++|.+ +++||+|+.+..+..  
T Consensus        76 ~~~liD--tpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~  149 (394)
T TIGR00485        76 HYAHVD--CPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLEL  149 (394)
T ss_pred             EEEEEE--CCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHH
Confidence            456666  9999999765555667889999999998732211 12333334332   36655 689999986532221  


Q ss_pred             -HHHHHHHHHHcC-----CeEEEEcCCCCC
Q 031249           83 -KEEGEQFAKENG-----LLFLEASARTAQ  106 (163)
Q Consensus        83 -~~~~~~~~~~~~-----~~~~~~Sa~~~~  106 (163)
                       .+++..++..++     ++++++||.++.
T Consensus       150 ~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       150 VEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHhcCCCccCccEEECcccccc
Confidence             234566666665     579999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.01  E-value=2.4e-09  Score=84.49  Aligned_cols=95  Identities=26%  Similarity=0.317  Sum_probs=71.8

Q ss_pred             hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH----HHHH
Q 031249           17 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FAKE   92 (163)
Q Consensus        17 ~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~----~~~~   92 (163)
                      .++|..+...+.+.++++++|+|+.+..     ..|.+.+.+.. .+.|+++|+||+|+.. +.+..++...    +++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence            5788899999999999999999987643     23445555443 2579999999999865 3344444443    3556


Q ss_pred             cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 031249           93 NGL---LFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        93 ~~~---~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .++   .++++||+++.|++++|+.+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   38999999999999999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.01  E-value=6.2e-10  Score=90.30  Aligned_cols=115  Identities=25%  Similarity=0.280  Sum_probs=86.4

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH-HHHHHHHhcC--CCCeEEEEeeCCCCCCCCcc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHAN--PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~--~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..|.|  |+-.+.-......-++.||++.+||+++++.+++.+.. |+..+++..+  .++|+||||||.|......-
T Consensus        56 vpt~ivD--~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   56 VPTSIVD--TSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             CceEEEe--cccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            3455555  77655555566788999999999999999999999866 9999988664  57999999999998654322


Q ss_pred             CHHH-HHHHHHHcC-Ce-EEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEE-GEQFAKENG-LL-FLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +.+. ..-+..++. +. +++|||++..++.++|+...+.++.
T Consensus       134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIH  176 (625)
T ss_pred             chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence            2222 223333332 33 8999999999999999998887764

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.99  E-value=7e-09  Score=84.05  Aligned_cols=109  Identities=17%  Similarity=0.115  Sum_probs=70.6

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEE   85 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~   85 (163)
                      ++..+||||+++|-.....-+..+|++++|+|++....-....+.+..+.. . .-.|+++++||+|+.+...+.  .++
T Consensus       118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-l-gi~~iIVvlNKiDlv~~~~~~~~~~e  195 (460)
T PTZ00327        118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-M-KLKHIIILQNKIDLVKEAQAQDQYEE  195 (460)
T ss_pred             eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-c-CCCcEEEEEecccccCHHHHHHHHHH
Confidence            455566999999977666677899999999999863101111222222222 2 124789999999986422211  123


Q ss_pred             HHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           86 GEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        86 ~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      +..+...   ...+++++||+++.|++.|++.|...
T Consensus       196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~  231 (460)
T PTZ00327        196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ  231 (460)
T ss_pred             HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence            3333322   25679999999999999888888653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.98  E-value=3.6e-09  Score=82.99  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc-CHHHHHHHHHHcCCeEEEEcCCCCC
Q 031249           28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASARTAQ  106 (163)
Q Consensus        28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v-~~~~~~~~~~~~~~~~~~~Sa~~~~  106 (163)
                      ..++|.+++|++.+...++..+..|+..+..   .++|++||+||+|+.+..+. ...+........+++++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999988899999999875543   35899999999999653211 1122233345668899999999999


Q ss_pred             CHHHHHHHHHH
Q 031249          107 NVEEAFIKTAA  117 (163)
Q Consensus       107 ~i~~lf~~l~~  117 (163)
                      |++++++.|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999988854

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.97  E-value=8.6e-09  Score=81.95  Aligned_cols=121  Identities=19%  Similarity=0.091  Sum_probs=82.6

Q ss_pred             ccceeeEeeecccchhh----------hhhc-hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQES----------FRSI-TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~----------~~~~-~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ++..+.+.|  |||..+          |... ....+..+|.+++|.|++.+-+-++. .....+.+   .+.+++++.|
T Consensus       224 ~~~~~~liD--TAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvN  297 (444)
T COG1160         224 DGRKYVLID--TAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVN  297 (444)
T ss_pred             CCeEEEEEE--CCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEE
Confidence            466777777  999644          3322 23367899999999999987655543 33333433   3589999999


Q ss_pred             CCCCCCCCccCHHHHHHHHH-Hc----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249           72 KCDLAHRRAVSKEEGEQFAK-EN----GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  129 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~~~~-~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~  129 (163)
                      |+|+.++.....++.+.... .+    ..+++.+||+++.++..+|+.+............++
T Consensus       298 KWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts  360 (444)
T COG1160         298 KWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTS  360 (444)
T ss_pred             ccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHH
Confidence            99987754445555433322 22    346899999999999999999977766554444443

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.96  E-value=5.8e-09  Score=72.49  Aligned_cols=105  Identities=18%  Similarity=0.220  Sum_probs=67.3

Q ss_pred             eeeEeeecccc----------hhhhhhchhhhcc---CCcEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            6 ESFFWSLLQAG----------QESFRSITRSYYR---GAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         6 ~~~l~d~Dt~G----------~e~~~~~~~~~~~---~ad~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      .+.+||  |+|          .+.+..++..|+.   +.+++++++|.+...+  ...+..|+..   .   ..|+++++
T Consensus        46 ~~~~~D--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~  117 (170)
T cd01876          46 KFRLVD--LPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVL  117 (170)
T ss_pred             eEEEec--CCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEE
Confidence            455666  898          3456666666665   4578999999876532  2223333332   2   37999999


Q ss_pred             eCCCCCCCCccC--HHHHHHHHH--HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVS--KEEGEQFAK--ENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        71 nK~D~~~~~~v~--~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ||+|+.......  ........+  ....+++++|++++.++.+++++|.+.
T Consensus       118 nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         118 TKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            999985432211  112222222  234568999999999999999999765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>smart00275 G_alpha G protein alpha subunit

Probab=98.96  E-value=9.7e-09  Score=80.51  Aligned_cols=121  Identities=19%  Similarity=0.166  Sum_probs=84.7

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHAN-PNMSIMLVG   70 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~ilv~   70 (163)
                      +++..+.+||  .+|+..++..|..++.+++++|||+|+++.          ..+.+....++.+..... .++|++|++
T Consensus       181 ~~~~~~~~~D--vgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~  258 (342)
T smart00275      181 VKKLFFRMFD--VGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFL  258 (342)
T ss_pred             ECCeEEEEEe--cCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence            3466778888  799999999999999999999999999873          245555555666554322 569999999


Q ss_pred             eCCCCCCCC---------------ccCHHHHHHHHH-----Hc------CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           71 NKCDLAHRR---------------AVSKEEGEQFAK-----EN------GLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        71 nK~D~~~~~---------------~v~~~~~~~~~~-----~~------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      ||.|+..++               .-..+.+..+..     ..      .+-++.++|.+..++..+|+.+...+.+...
T Consensus       259 NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      259 NKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             ecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            999974210               012233333221     11      1235677899999999999998888776543

Subunit of G proteins that contains the guanine nucleotide binding site

>cd04169 RF3 RF3 subfamily

Probab=98.95  E-value=7.7e-09  Score=78.47  Aligned_cols=69  Identities=19%  Similarity=0.146  Sum_probs=51.4

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      ++..+.|||  |||+++|......+++.+|++|+|+|+++.... ....+++....   .++|+++++||+|+..
T Consensus        69 ~~~~i~liD--TPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          69 RDCVINLLD--TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             CCEEEEEEE--CCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            355677777  999999988778889999999999999875322 22334444333   3589999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12735 elongation factor Tu; Reviewed

Probab=98.94  E-value=9.8e-09  Score=82.03  Aligned_cols=96  Identities=17%  Similarity=0.167  Sum_probs=62.5

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCcc---CH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAV---SK   83 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~~~~v---~~   83 (163)
                      ++..+||||+++|.......+..+|++++|+|+.+...- ....++..+..   .++|.+ +++||+|+.+..+.   ..
T Consensus        76 ~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~  151 (396)
T PRK12735         76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVE  151 (396)
T ss_pred             EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHH
Confidence            334444999999877666777899999999999874321 22234444433   246755 57999998642221   12


Q ss_pred             HHHHHHHHHcC-----CeEEEEcCCCCCC
Q 031249           84 EEGEQFAKENG-----LLFLEASARTAQN  107 (163)
Q Consensus        84 ~~~~~~~~~~~-----~~~~~~Sa~~~~~  107 (163)
                      .++..++..++     ++++++||.++.+
T Consensus       152 ~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        152 MEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HHHHHHHHHcCCCcCceeEEecchhcccc
Confidence            24555666554     5689999999853

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.93  E-value=6.5e-09  Score=82.83  Aligned_cols=109  Identities=17%  Similarity=0.150  Sum_probs=76.6

Q ss_pred             CccceeeEeeecccchhhhhhc--------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249            2 FFSQESFFWSLLQAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      ++|.+++|.|  |||.+.....        ....++.||.++||+|.+.+.+-.+. ..+.    ....++|+++|.||.
T Consensus       262 i~G~pv~l~D--TAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~  334 (454)
T COG0486         262 LNGIPVRLVD--TAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKA  334 (454)
T ss_pred             ECCEEEEEEe--cCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEech
Confidence            4688999998  9997654432        34568899999999999985332222 1122    233568999999999


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        74 D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |+........     .....+.+++.+|++++.|++.+.+.|.+.+...
T Consensus       335 DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         335 DLVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             hcccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            9966433211     1112244689999999999999999998777665

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.93  E-value=1.3e-08  Score=80.86  Aligned_cols=106  Identities=17%  Similarity=0.052  Sum_probs=70.8

Q ss_pred             cceeeEeeecccchhhhh---------hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            4 SQESFFWSLLQAGQESFR---------SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~---------~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +.+|.+.|  |+|.+...         ......+..||++|||+|....-+-.+ ....+.++.   .++|++||+||+|
T Consensus        50 ~~~f~lID--TgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr~---~~kpviLvvNK~D  123 (444)
T COG1160          50 GREFILID--TGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPAD-EEIAKILRR---SKKPVILVVNKID  123 (444)
T ss_pred             CceEEEEE--CCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEEccc
Confidence            44566666  99965322         234456789999999999876433322 122233332   3489999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ...     .++...-...+|+ .++.+||.+|.|+.+++++++..+.
T Consensus       124 ~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         124 NLK-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             Cch-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence            742     1222222234455 4899999999999999999998874

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.92  E-value=1.7e-08  Score=83.26  Aligned_cols=67  Identities=21%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      +..+.|||  |||+++|......+++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+.
T Consensus        78 ~~~inliD--TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         78 DCLINLLD--TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CEEEEEEE--CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            45667777  999999998888889999999999999875322 23344444433   358999999999975

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.91  E-value=9.8e-09  Score=82.27  Aligned_cols=102  Identities=21%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--   82 (163)
                      ..+.|||  |||+++|.......+..+|++|+|+|+.....-+. .+.+..+....  ..++++++||+|+.+.....  
T Consensus        80 ~~~~liD--tPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~  154 (406)
T TIGR02034        80 RKFIVAD--TPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFE  154 (406)
T ss_pred             eEEEEEe--CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC--CCcEEEEEEecccccchHHHHH
Confidence            3455555  99999997766667889999999999876432111 11222222222  24688999999986422111  


Q ss_pred             --HHHHHHHHHHcC---CeEEEEcCCCCCCHHHH
Q 031249           83 --KEEGEQFAKENG---LLFLEASARTAQNVEEA  111 (163)
Q Consensus        83 --~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l  111 (163)
                        .++...+.+..+   .+++++||++|.|+.+.
T Consensus       155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence              122333444444   35999999999998863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK13768 GTPase; Provisional

Probab=98.89  E-value=1.4e-08  Score=76.44  Aligned_cols=109  Identities=18%  Similarity=0.193  Sum_probs=69.3

Q ss_pred             eeeEeeecccchhhh---hhchhhhccC-----CcEEEEEEECCChHHHHHHH--HHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            6 ESFFWSLLQAGQESF---RSITRSYYRG-----AAGALLVYDITRRETFNHLS--SWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~---~~~~~~~~~~-----ad~~i~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      .+.+||  |||+.++   ...+..+++.     ++++++|+|+....+..+..  .|+....... .++|+++|+||+|+
T Consensus        98 ~~~~~d--~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~  174 (253)
T PRK13768         98 DYVLVD--TPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADL  174 (253)
T ss_pred             CEEEEe--CCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhh
Confidence            567777  9998764   3344444433     89999999996543332221  2232222222 35899999999998


Q ss_pred             CCCCccCHHHHHH----------------------------HHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQ----------------------------FAKENG--LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        76 ~~~~~v~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+..+.  ++...                            ..+..+  .+++++|++++.|++++++++.+.+
T Consensus       175 ~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        175 LSEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             cCchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            654322  11111                            122333  4689999999999999999997654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.88  E-value=7.5e-09  Score=84.39  Aligned_cols=103  Identities=17%  Similarity=0.082  Sum_probs=63.6

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.|||  |||+++|.......+..+|++++|+|++....-.. ...+..+....  ..|+++++||+|+.+..+...+
T Consensus       107 ~~i~~iD--TPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        107 RKFIIAD--TPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             cEEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence            3455555  99999997655555799999999999976421111 11111122211  2478999999998642211112


Q ss_pred             ----HHHHHHHHcC----CeEEEEcCCCCCCHHHHH
Q 031249           85 ----EGEQFAKENG----LLFLEASARTAQNVEEAF  112 (163)
Q Consensus        85 ----~~~~~~~~~~----~~~~~~Sa~~~~~i~~lf  112 (163)
                          +...+.+..+    .+++++||+++.|+.++-
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence                2223333333    569999999999998653

>PRK13351 elongation factor G; Reviewed

Probab=98.88  E-value=2.3e-08  Score=85.03  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=53.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|||  |||+.+|...+..+++.+|++++|+|+++....... ..+..+...   ++|+++++||+|+..
T Consensus        72 ~~~i~liD--tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~~---~~p~iiviNK~D~~~  139 (687)
T PRK13351         72 NHRINLID--TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADRY---GIPRLIFINKMDRVG  139 (687)
T ss_pred             CEEEEEEE--CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHhc---CCCEEEEEECCCCCC
Confidence            45666776  999999999999999999999999999987655543 333444332   589999999999863

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=9.2e-09  Score=71.46  Aligned_cols=113  Identities=15%  Similarity=0.145  Sum_probs=83.6

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCc
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~   80 (163)
                      +++..+.-+|  .+|+..-+..|+.|+..+|+++|.+|+.|.+-|......++.+.... ....|+++.+||+|.+..  
T Consensus        61 Ig~m~ftt~D--LGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--  136 (193)
T KOG0077|consen   61 IGGMTFTTFD--LGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--  136 (193)
T ss_pred             ecCceEEEEc--cccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--
Confidence            3455666666  79999999999999999999999999999999988877777764433 256999999999998653  


Q ss_pred             cCHHHHHHHHH---HcC--------------CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAK---ENG--------------LLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        81 v~~~~~~~~~~---~~~--------------~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..+++......   ..+              +.++.||...+.+..+.|.|+...
T Consensus       137 ~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  137 ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence            34444322111   111              237889998888888888887654

>CHL00071 tufA elongation factor Tu

Probab=98.84  E-value=2.5e-08  Score=79.99  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=65.8

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccC---
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---   82 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~---   82 (163)
                      .++..+||||+++|.......+..+|++++|+|+..... .....++..+...   ++| +|+++||+|+.+..+..   
T Consensus        75 ~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~  150 (409)
T CHL00071         75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELV  150 (409)
T ss_pred             eEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHH
Confidence            345556699999987766777889999999999986432 2223344444432   467 77899999986532211   


Q ss_pred             HHHHHHHHHHcC-----CeEEEEcCCCCCCH
Q 031249           83 KEEGEQFAKENG-----LLFLEASARTAQNV  108 (163)
Q Consensus        83 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~i  108 (163)
                      .+++..+++..+     ++++++||.++.++
T Consensus       151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        151 ELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            234555555544     56999999998754

>PRK00049 elongation factor Tu; Reviewed

Probab=98.81  E-value=6.9e-08  Score=77.19  Aligned_cols=97  Identities=16%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCccC---
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---   82 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~~~~v~---   82 (163)
                      .++..+||||+++|.......+..+|++++|+|+..... .....++..+...   ++|.+ +++||+|+.+..+..   
T Consensus        75 ~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~  150 (396)
T PRK00049         75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELV  150 (396)
T ss_pred             eEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHH
Confidence            345555699999987766677899999999999986432 2223344444433   47875 589999986422211   


Q ss_pred             HHHHHHHHHHcC-----CeEEEEcCCCCCC
Q 031249           83 KEEGEQFAKENG-----LLFLEASARTAQN  107 (163)
Q Consensus        83 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~  107 (163)
                      ..++..+....+     .+++++||.++.+
T Consensus       151 ~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        151 EMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence            123444444433     5689999998753

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.80  E-value=2e-08  Score=66.74  Aligned_cols=98  Identities=19%  Similarity=0.112  Sum_probs=74.3

Q ss_pred             eecccc----hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249           11 SLLQAG----QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG   86 (163)
Q Consensus        11 d~Dt~G----~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~   86 (163)
                      ++||||    +.++++-+.....++|.+++|-.++++.+.-.     .-+...  ...|+|-|.+|.|+.++.  ..+..
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~  111 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDA--DISLV  111 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccchH--hHHHH
Confidence            778999    56666666777889999999999999754221     011111  236799999999997643  35677


Q ss_pred             HHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHH
Q 031249           87 EQFAKENGLL-FLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        87 ~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      +.|+.+.|.. +|++|+.++.|+++++..|..
T Consensus       112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            8888888865 999999999999999988754

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.80  E-value=2e-08  Score=76.38  Aligned_cols=67  Identities=18%  Similarity=0.115  Sum_probs=49.6

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      .++..+||||+.+|...+..+++.+|++|+|+|+.+...-. ...++..+...   ++|+++++||+|+.+
T Consensus        64 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~~p~ivviNK~D~~~  130 (270)
T cd01886          64 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---NVPRIAFVNKMDRTG  130 (270)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---CCCEEEEEECCCCCC
Confidence            34444559999999988999999999999999997743222 22344444443   489999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.79  E-value=4.2e-08  Score=82.75  Aligned_cols=100  Identities=20%  Similarity=0.123  Sum_probs=64.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--   83 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~--   83 (163)
                      .+.|+|  |||+++|.......+..+|++++|+|++....-. ....+..+....  ..|++|++||+|+.+......  
T Consensus       105 ~~~liD--tPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~~  179 (632)
T PRK05506        105 KFIVAD--TPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFDE  179 (632)
T ss_pred             eEEEEE--CCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHHHHH
Confidence            455555  9999998765556788999999999997643211 112222222221  257899999999864211111  


Q ss_pred             --HHHHHHHHHcCC---eEEEEcCCCCCCHHH
Q 031249           84 --EEGEQFAKENGL---LFLEASARTAQNVEE  110 (163)
Q Consensus        84 --~~~~~~~~~~~~---~~~~~Sa~~~~~i~~  110 (163)
                        .+...+.+..++   +++++||+++.|+.+
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              223334455554   489999999999874

>COG2262 HflX GTPases [General function prediction only]

Probab=98.79  E-value=2e-07  Score=73.32  Aligned_cols=120  Identities=18%  Similarity=0.131  Sum_probs=81.2

Q ss_pred             ceeeEeeecccch---------hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            5 QESFFWSLLQAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         5 ~~~~l~d~Dt~G~---------e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      ..+.+-|  |-|-         +.|.+. -.-..+||.++.|+|++++.-.+.+.....-+.+..-..+|+|+|.||+|+
T Consensus       240 ~~vlLtD--TVGFI~~LP~~LV~AFksT-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~  316 (411)
T COG2262         240 RKVLLTD--TVGFIRDLPHPLVEAFKST-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL  316 (411)
T ss_pred             ceEEEec--CccCcccCChHHHHHHHHH-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence            3455555  8882         333332 224568999999999999976666666666665554456899999999997


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccccc
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN  132 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~  132 (163)
                      ..+..    ....+..... ..+.+||+++.|++.+...|...+...........+.
T Consensus       317 ~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~  368 (411)
T COG2262         317 LEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPY  368 (411)
T ss_pred             cCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence            55332    1111212222 5899999999999999999988887666555544444

>PLN03127 Elongation factor Tu; Provisional

Probab=98.77  E-value=6e-08  Score=78.59  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=58.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccCH-
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSK-   83 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~~-   83 (163)
                      ..++..+||||+++|.......+..+|++++|+|+++...- ...+.+..+...   ++| +|+++||+|+.+..+... 
T Consensus       123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~  198 (447)
T PLN03127        123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLEL  198 (447)
T ss_pred             CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHH
Confidence            34666777999998876555556679999999998764322 223344444433   478 578899999865322111 


Q ss_pred             --HHHHHHHHHcC-----CeEEEEcCC
Q 031249           84 --EEGEQFAKENG-----LLFLEASAR  103 (163)
Q Consensus        84 --~~~~~~~~~~~-----~~~~~~Sa~  103 (163)
                        .+...+....+     ++++++|+.
T Consensus       199 i~~~i~~~l~~~~~~~~~vpiip~Sa~  225 (447)
T PLN03127        199 VEMELRELLSFYKFPGDEIPIIRGSAL  225 (447)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEeccc
Confidence              12333333322     568888875

>PRK12740 elongation factor G; Reviewed

Probab=98.76  E-value=9.1e-08  Score=81.21  Aligned_cols=67  Identities=16%  Similarity=0.113  Sum_probs=51.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      +..+.|||  |||+.+|...+..+++.+|++++|+|++........ ..+..+..   .++|+++++||+|+.
T Consensus        59 ~~~i~liD--tPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         59 GHKINLID--TPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             CEEEEEEE--CCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence            45666776  999999988888999999999999999886554433 33344433   358999999999985

>cd01858 NGP_1 NGP-1

Probab=98.73  E-value=5.9e-08  Score=67.80  Aligned_cols=92  Identities=15%  Similarity=0.080  Sum_probs=57.2

Q ss_pred             hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCC
Q 031249           25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  104 (163)
Q Consensus        25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  104 (163)
                      ...++++|.+++|.|+.++.... ...+.+.+... ..++|+++|+||+|+.++..+ ......+.+.+....+.+||++
T Consensus         3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            34578999999999998864221 11222333322 235899999999998542211 1111222222223357899999


Q ss_pred             CCCHHHHHHHHHHHH
Q 031249          105 AQNVEEAFIKTAAKI  119 (163)
Q Consensus       105 ~~~i~~lf~~l~~~~  119 (163)
                      +.|++++++.+....
T Consensus        80 ~~~~~~L~~~l~~~~   94 (157)
T cd01858          80 PFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999886643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.72  E-value=6.5e-08  Score=68.59  Aligned_cols=98  Identities=14%  Similarity=0.082  Sum_probs=65.4

Q ss_pred             cch-hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249           15 AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN   93 (163)
Q Consensus        15 ~G~-e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~   93 (163)
                      ||+ .+........+++||.+++|+|+.++...... .+++.+     .++|+++|+||+|+.+...  .....++.+..
T Consensus         3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~   74 (171)
T cd01856           3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESK   74 (171)
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhc
Confidence            564 45555678889999999999999875432221 122222     2478999999999853211  11111222333


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           94 GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        94 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +..++.+||+++.|++++.+.+...+.
T Consensus        75 ~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          75 GEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            456899999999999999999887753

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.68  E-value=1.2e-07  Score=76.78  Aligned_cols=100  Identities=21%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HH---HHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC--C
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH--R   78 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~--~   78 (163)
                      .+..+||||+++|.......+..+|++++|+|++...   .|   ....+.+..+...   ++| +|+++||+|...  -
T Consensus        86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~~  162 (446)
T PTZ00141         86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVNY  162 (446)
T ss_pred             EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccchh
Confidence            3444459999999887778889999999999998642   11   1223333333332   355 678999999532  0


Q ss_pred             Cc----cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 031249           79 RA----VSKEEGEQFAKENG-----LLFLEASARTAQNVEE  110 (163)
Q Consensus        79 ~~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  110 (163)
                      .+    ...+++..++...+     ++++++|+.+|+|+.+
T Consensus       163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            11    11233444444444     4699999999999864

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.67  E-value=1.8e-07  Score=71.44  Aligned_cols=106  Identities=18%  Similarity=0.178  Sum_probs=74.1

Q ss_pred             Eeeecccchhhhhh----c---hhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC
Q 031249            9 FWSLLQAGQESFRS----I---TRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA   76 (163)
Q Consensus         9 l~d~Dt~G~e~~~~----~---~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~~   76 (163)
                      +-.-|.||.-+-.+    |   .-..+..++.++||+|++..   ..++++..++.++..+..  .+.|.++|+||+|++
T Consensus       246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            44445788533222    2   23356789999999999987   667777777777655443  578999999999985


Q ss_pred             CCCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHH
Q 031249           77 HRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        77 ~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      +.   ......++.+...-+ ++++||+.+++++++++.|-+
T Consensus       326 ea---e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  326 EA---EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             hH---HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence            32   112235566655544 999999999999999887743

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.66  E-value=2.8e-07  Score=69.93  Aligned_cols=86  Identities=17%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.|||  |||+.+|...+..+++.+|++++|+|+++...... ...++.+..   .++|+++++||+|....  ...
T Consensus        63 ~~~i~liD--tPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~---~~~p~iivvNK~D~~~~--~~~  134 (268)
T cd04170          63 GHKINLID--TPGYADFVGETRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE---AGIPRIIFINKMDRERA--DFD  134 (268)
T ss_pred             CEEEEEEE--CcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCccCCC--CHH
Confidence            44566766  99999998888999999999999999987644432 233333433   35899999999998542  112


Q ss_pred             HHHHHHHHHcCCeE
Q 031249           84 EEGEQFAKENGLLF   97 (163)
Q Consensus        84 ~~~~~~~~~~~~~~   97 (163)
                      .....+...++.++
T Consensus       135 ~~~~~l~~~~~~~~  148 (268)
T cd04170         135 KTLAALQEAFGRPV  148 (268)
T ss_pred             HHHHHHHHHhCCCe
Confidence            33344444555543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.66  E-value=1.8e-07  Score=72.70  Aligned_cols=53  Identities=11%  Similarity=0.107  Sum_probs=36.1

Q ss_pred             CCeEEEEeeCCCCCCCCccCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHH-HHHHHH
Q 031249           63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFI-KTAAKI  119 (163)
Q Consensus        63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~-~l~~~~  119 (163)
                      .+|+|+++||.|+.....    ....+.... ...++.+||+.+.++.++.+ .+.+.+
T Consensus       214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l  268 (318)
T cd01899         214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD  268 (318)
T ss_pred             CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence            479999999999743221    111222233 45699999999999999876 465554

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.65  E-value=1.5e-07  Score=80.11  Aligned_cols=94  Identities=16%  Similarity=0.064  Sum_probs=62.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.|||  |||+.+|...+..+++.+|+++||+|+.+....... .++..+..   .++|+++++||+|+....  ..
T Consensus        74 ~~~i~liD--TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~  145 (689)
T TIGR00484        74 GHRINIID--TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FL  145 (689)
T ss_pred             CeEEEEEE--CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HH
Confidence            44566666  999999988889999999999999999876544432 33444443   348999999999986522  12


Q ss_pred             HHHHHHHHHcCCe----EEEEcCCCC
Q 031249           84 EEGEQFAKENGLL----FLEASARTA  105 (163)
Q Consensus        84 ~~~~~~~~~~~~~----~~~~Sa~~~  105 (163)
                      .....+...++..    .+++|+..+
T Consensus       146 ~~~~~i~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       146 RVVNQIKQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHHHHHHHHhCCCceeEEeccccCCC
Confidence            2233444444432    455565544

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.65  E-value=3.4e-07  Score=63.84  Aligned_cols=87  Identities=17%  Similarity=0.088  Sum_probs=56.3

Q ss_pred             cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 031249           32 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  111 (163)
Q Consensus        32 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  111 (163)
                      |.+++|+|+.++.+...  .++.. ......++|+++|+||+|+.+...+ ......+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988765543  23331 1111245899999999998542111 01111232333556899999999999999


Q ss_pred             HHHHHHHHHHH
Q 031249          112 FIKTAAKILQN  122 (163)
Q Consensus       112 f~~l~~~~~~~  122 (163)
                      ++.+.+...+.
T Consensus        77 ~~~i~~~~~~~   87 (155)
T cd01849          77 ESAFTKQTNSN   87 (155)
T ss_pred             HHHHHHHhHHH
Confidence            99998765433

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.65  E-value=2.1e-07  Score=71.03  Aligned_cols=102  Identities=18%  Similarity=0.244  Sum_probs=67.9

Q ss_pred             eeecccchhh-hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249           10 WSLLQAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ   88 (163)
Q Consensus        10 ~d~Dt~G~e~-~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~   88 (163)
                      |.   |||.. ........++.+|++++|+|+.++.+...  ..+..+.    .++|+++|+||+|+.+...  ......
T Consensus         3 Wf---pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~   71 (276)
T TIGR03596         3 WF---PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLK   71 (276)
T ss_pred             cC---hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHH
Confidence            66   88754 34456778999999999999977644332  1122221    2479999999999853211  111111


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           89 FAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      .....+.+++.+||+++.|++++.+.+.+.+...
T Consensus        72 ~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        72 YFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            2233456789999999999999998887776543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.64  E-value=1.7e-07  Score=66.96  Aligned_cols=72  Identities=21%  Similarity=0.330  Sum_probs=47.9

Q ss_pred             cceeeEeeecccchhhhhhc-hhh--hccCCcEEEEEEECCC-hHHHHHHHHHHHHH-HHhc--CCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSI-TRS--YYRGAAGALLVYDITR-RETFNHLSSWLEDA-RQHA--NPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~-~~~--~~~~ad~~i~v~d~~~-~~s~~~~~~~~~~l-~~~~--~~~~p~ilv~nK~D~~   76 (163)
                      +..+.+.|  +||+++.+.. +..  +...+.++|||+|.+. ...+.++.+++-.+ ....  ...+|++|++||.|+.
T Consensus        48 ~~~~~lvD--~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~  125 (181)
T PF09439_consen   48 GKKLRLVD--IPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF  125 (181)
T ss_dssp             GTCECEEE--ETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred             CCEEEEEE--CCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence            44666777  8999998874 443  5889999999999874 45566655544433 2222  2569999999999985


Q ss_pred             C
Q 031249           77 H   77 (163)
Q Consensus        77 ~   77 (163)
                      .
T Consensus       126 ~  126 (181)
T PF09439_consen  126 T  126 (181)
T ss_dssp             T
T ss_pred             c
Confidence            5

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PLN03126 Elongation factor Tu; Provisional

Probab=98.63  E-value=2.1e-07  Score=75.95  Aligned_cols=99  Identities=14%  Similarity=0.079  Sum_probs=65.4

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.|+|  |||+++|.......+..+|++++|+|+.+...- ...+++..+...   ++| +++++||+|+.+..+..
T Consensus       143 ~~~i~liD--tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~  216 (478)
T PLN03126        143 NRHYAHVD--CPGHADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELL  216 (478)
T ss_pred             CcEEEEEE--CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHH
Confidence            34555665  999999987667777899999999998865322 223444444433   467 77899999986532211


Q ss_pred             ---HHHHHHHHHHc-----CCeEEEEcCCCCCCH
Q 031249           83 ---KEEGEQFAKEN-----GLLFLEASARTAQNV  108 (163)
Q Consensus        83 ---~~~~~~~~~~~-----~~~~~~~Sa~~~~~i  108 (163)
                         .+++..+++..     .++++++|+.++.++
T Consensus       217 ~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        217 ELVELEVRELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence               12445555554     356999999887543

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=2.6e-07  Score=77.35  Aligned_cols=112  Identities=18%  Similarity=0.210  Sum_probs=78.1

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC-C----C
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-H----R   78 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~-~----~   78 (163)
                      +.++|  |||+|.|..++.....-||.+|+|+|+...   ++.+.    ++.++.+   ++|+||.+||+|.. .    +
T Consensus       542 ~lvId--tpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~r---ktpFivALNKiDRLYgwk~~p  612 (1064)
T KOG1144|consen  542 LLVID--TPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRMR---KTPFIVALNKIDRLYGWKSCP  612 (1064)
T ss_pred             eEEec--CCCchhhhhhhhccccccceEEEEeehhccCCcchhHH----HHHHHhc---CCCeEEeehhhhhhcccccCC
Confidence            44444  999999999999999999999999999763   33333    3444443   48999999999952 1    0


Q ss_pred             -CccC----------HH--------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           79 -RAVS----------KE--------EGEQFAKENG---------------LLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        79 -~~v~----------~~--------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                       ..+-          ..        .+.+|+. .|               ++++++||..|+||-+|+-+|+......+.
T Consensus       613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaE-QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~  691 (1064)
T KOG1144|consen  613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAE-QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV  691 (1064)
T ss_pred             CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence             0000          00        0111221 11               247899999999999999999999888876


Q ss_pred             hccc
Q 031249          125 EGAL  128 (163)
Q Consensus       125 ~~~~  128 (163)
                      ++-.
T Consensus       692 ~kl~  695 (1064)
T KOG1144|consen  692 EKLA  695 (1064)
T ss_pred             HHHh
Confidence            6543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.59  E-value=4e-07  Score=67.61  Aligned_cols=118  Identities=20%  Similarity=0.322  Sum_probs=75.7

Q ss_pred             ccceeeEeeecccchhhhhh-----chhhhccCCcEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFRS-----ITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~-----~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +...++|||  .||+..+-.     .....+++++++|||+|+.+.+   .+..+...++.+.+.. ++..+.++..|+|
T Consensus        46 ~~~~l~iwD--~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D  122 (232)
T PF04670_consen   46 SFLPLNIWD--CPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMD  122 (232)
T ss_dssp             TSCEEEEEE--E-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CC
T ss_pred             CCcEEEEEE--cCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecc
Confidence            456889999  699865533     3577899999999999998433   3444555666666665 7899999999999


Q ss_pred             CCCCCc--cC----HHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           75 LAHRRA--VS----KEEGEQFAKENG---LLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        75 ~~~~~~--v~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      +..+..  ..    .+++...+...+   +.++.+|.-+ ..+.+.|..++..++.+..
T Consensus       123 ~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  123 LLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             CS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence            854211  11    122334444555   6688888877 5777777777776665443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.56  E-value=2.7e-07  Score=63.36  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=51.9

Q ss_pred             hhhccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249           25 RSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  102 (163)
Q Consensus        25 ~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  102 (163)
                      ...++++|++++|+|+.++.+..  .+..++...   . .++|+++|+||+|+.++..  ........+..+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            45678999999999998876544  233333322   1 4589999999999854221  22333445555678999999


Q ss_pred             CCCCC
Q 031249          103 RTAQN  107 (163)
Q Consensus       103 ~~~~~  107 (163)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            88653

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12739 elongation factor G; Reviewed

Probab=98.55  E-value=1.1e-06  Score=75.06  Aligned_cols=68  Identities=16%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|+|  |||+.+|...+...++.+|++|+|+|+.+...-.. ...+..+..   .++|+++++||+|+..
T Consensus        72 ~~~i~liD--TPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         72 GHRINIID--TPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             CEEEEEEc--CCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            33455555  99999998888999999999999999987543322 233444433   3489999999999863

>TIGR00503 prfC peptide chain release factor 3

Probab=98.55  E-value=3.7e-07  Score=75.39  Aligned_cols=69  Identities=19%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      ++..+.|||  |||+.+|......+++.+|++|+|+|+++... .....+++....   .++|+++++||+|+..
T Consensus        78 ~~~~inliD--TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        78 RDCLVNLLD--TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             CCeEEEEEE--CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            345566666  99999998877778999999999999987421 122334443333   3589999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.50  E-value=8.8e-07  Score=68.69  Aligned_cols=97  Identities=22%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH--HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC---
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS--SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---   82 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~---   82 (163)
                      .|+.-||||+|+|....-.-...||.+|+++|+-..- .+...  .++..+..    -..++|..||+||.+=.+--   
T Consensus        87 kFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e~~F~~  161 (431)
T COG2895          87 KFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSEEVFEA  161 (431)
T ss_pred             eEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC----CcEEEEEEeeecccccCHHHHHH
Confidence            3445569999999987777888999999999985431 11111  12333322    25788889999997632211   


Q ss_pred             -HHHHHHHHHHcCCe---EEEEcCCCCCCHH
Q 031249           83 -KEEGEQFAKENGLL---FLEASARTAQNVE  109 (163)
Q Consensus        83 -~~~~~~~~~~~~~~---~~~~Sa~~~~~i~  109 (163)
                       ..+...++...++.   ++++||..|+||-
T Consensus       162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence             23345577777764   9999999999976

>PRK13796 GTPase YqeH; Provisional

Probab=98.50  E-value=1.4e-06  Score=69.03  Aligned_cols=93  Identities=26%  Similarity=0.369  Sum_probs=62.8

Q ss_pred             hhhhhchhhhccCCc-EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH----HHH
Q 031249           18 ESFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----AKE   92 (163)
Q Consensus        18 e~~~~~~~~~~~~ad-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~----~~~   92 (163)
                      +.|..+.... ..+| .+++|+|+.|..     ..|...+.+.. .+.|+++|+||+|+.. +....+++..+    ++.
T Consensus        57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence            4455544444 4445 999999988743     23445554433 2579999999999964 33444444434    455


Q ss_pred             cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 031249           93 NGL---LFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        93 ~~~---~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .++   .++.+||+++.|++++++.+.+.
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            565   48999999999999999998654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.49  E-value=8.2e-07  Score=68.11  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             eeecccchhhh-hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249           10 WSLLQAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ   88 (163)
Q Consensus        10 ~d~Dt~G~e~~-~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~   88 (163)
                      |.   |||..- .......++.+|++|+|+|+.++.+...  .++..+..    ++|+++|.||+|+.+...  .+....
T Consensus         6 wf---pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~   74 (287)
T PRK09563          6 WF---PGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIE   74 (287)
T ss_pred             Cc---HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHH
Confidence            76   887543 3456778899999999999977644332  12222221    479999999999843210  111122


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           89 FAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      .....+.+++.+|++++.|++++.+.+...+...
T Consensus        75 ~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         75 YFEEQGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            2233456789999999999999998887776543

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.48  E-value=1.3e-06  Score=66.69  Aligned_cols=114  Identities=18%  Similarity=0.112  Sum_probs=70.8

Q ss_pred             cceeeEeeecccch------hhhhh------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            4 SQESFFWSLLQAGQ------ESFRS------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~------e~~~~------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ...-|+..+||||.      .++..      --+..+.+||++++|+|+++....-. ...+..+.++.  .+|-+||.|
T Consensus       117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmn  193 (379)
T KOG1423|consen  117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMN  193 (379)
T ss_pred             cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeecc
Confidence            34567777779993      12111      12446779999999999997332211 22334444443  489999999


Q ss_pred             CCCCCCCCccCH----------------HHHHHHHHHc------------CCe-EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVSK----------------EEGEQFAKEN------------GLL-FLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        72 K~D~~~~~~v~~----------------~~~~~~~~~~------------~~~-~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      |.|....+.+..                +...++....            +++ +|++||++|.||+++-++|+.+..
T Consensus       194 kid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  194 KIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             chhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            999765432211                1111121111            122 899999999999999999987654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.45  E-value=2.3e-06  Score=62.05  Aligned_cols=110  Identities=10%  Similarity=0.032  Sum_probs=66.5

Q ss_pred             eeeEeeecccchhhhhhch-----hhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSIT-----RSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR   79 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~-----~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~   79 (163)
                      .+.+||  |||........     ...+.++|.+++|.+.    .|.... .+++.+.+.   +.|+++|+||+|+....
T Consensus        53 ~l~l~D--tpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~  123 (197)
T cd04104          53 NVTLWD--LPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSN  123 (197)
T ss_pred             CceEEe--CCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhh
Confidence            567777  89964332222     2336789999998542    233333 456666554   47999999999984311


Q ss_pred             c-----------cCHHHHHH----HHHHcC--C-eEEEEcCC--CCCCHHHHHHHHHHHHHHHHh
Q 031249           80 A-----------VSKEEGEQ----FAKENG--L-LFLEASAR--TAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        80 ~-----------v~~~~~~~----~~~~~~--~-~~~~~Sa~--~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      .           ...++..+    .....+  . ++|.+|+.  .+.++..+.+.+...+-+...
T Consensus       124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            1           00112222    222222  2 48999998  568888888888887776543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.44  E-value=1.5e-06  Score=67.12  Aligned_cols=117  Identities=15%  Similarity=0.082  Sum_probs=78.1

Q ss_pred             eeeEeeecccchhh----hhhchhh---hccCCcEEEEEEECCChH---HHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031249            6 ESFFWSLLQAGQES----FRSITRS---YYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHAN--PNMSIMLVGNKC   73 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~----~~~~~~~---~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~   73 (163)
                      .|.+=|  .||.-.    -..+-..   .+..+.++++|+|++..+   ..++...+..++.++..  .++|.+||+||+
T Consensus       208 sfv~AD--IPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKi  285 (369)
T COG0536         208 SFVVAD--IPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKI  285 (369)
T ss_pred             cEEEec--CcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEecc
Confidence            355555  687422    1223333   456799999999998644   46667777777766653  468999999999


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           74 DLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        74 D~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      |++...+........+.+..+.. .+.+||.++.|++++...+.+.+.....
T Consensus       286 D~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         286 DLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETKA  337 (369)
T ss_pred             CCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhhh
Confidence            97553332223333344444444 2229999999999999999888887753

>PRK01889 GTPase RsgA; Reviewed

Probab=98.40  E-value=1.6e-06  Score=68.45  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 031249           28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQ  106 (163)
Q Consensus        28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~  106 (163)
                      +.++|.+++|++++..-....+..++..+...   ++|.+||+||+|+.++.   .+....+.. ..+++++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            58999999999997554555566666666554   47779999999996531   112222222 346789999999999


Q ss_pred             CHHHHHHHHH
Q 031249          107 NVEEAFIKTA  116 (163)
Q Consensus       107 ~i~~lf~~l~  116 (163)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888773

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.37  E-value=1.8e-06  Score=69.20  Aligned_cols=112  Identities=17%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      +++..+.|.|  |||+..|..-.+..+.-.|++++++|+....-- .....++...+   .+.+.|||.||+|.+..+..
T Consensus        65 ~~~~~INIvD--TPGHADFGGEVERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~  138 (603)
T COG1217          65 YNGTRINIVD--TPGHADFGGEVERVLSMVDGVLLLVDASEGPMP-QTRFVLKKALA---LGLKPIVVINKIDRPDARPD  138 (603)
T ss_pred             cCCeEEEEec--CCCcCCccchhhhhhhhcceEEEEEEcccCCCC-chhhhHHHHHH---cCCCcEEEEeCCCCCCCCHH
Confidence            4565666666  999999999999999999999999999874311 12233333333   34677899999998763211


Q ss_pred             C-HHHHHHHH-------HHcCCeEEEEcCCCCC----------CHHHHHHHHHHHH
Q 031249           82 S-KEEGEQFA-------KENGLLFLEASARTAQ----------NVEEAFIKTAAKI  119 (163)
Q Consensus        82 ~-~~~~~~~~-------~~~~~~~~~~Sa~~~~----------~i~~lf~~l~~~~  119 (163)
                      . .++...+.       .+..++++..|+++|.          +...+|+.+++++
T Consensus       139 ~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         139 EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            0 12222232       2345788888988863          4556666666554

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=1.2e-06  Score=67.29  Aligned_cols=111  Identities=21%  Similarity=0.140  Sum_probs=73.4

Q ss_pred             eeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc--cCHHHHH
Q 031249           10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGE   87 (163)
Q Consensus        10 ~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--v~~~~~~   87 (163)
                      -.+|.||+|-.-+..-.-..=.|++++|++++.+..--+..+.+-.+.-.  .-+.++++-||+|+....+  ...+++.
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qIk  166 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQIK  166 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHHH
Confidence            34459999986554444445579999999988643322233333333221  1257899999999976322  2234555


Q ss_pred             HHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           88 QFAKEN---GLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        88 ~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +|.+..   +.+++++||..+.||+.+++.|.+.+-.-
T Consensus       167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            565543   45799999999999999999988776543

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=8.2e-06  Score=59.25  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             ccceeeEeeecccchhhhhhchhhhcc---CCcEEEEEEECC-ChHHHHHHHH-HHHHHHHhc--CCCCeEEEEeeCCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYR---GAAGALLVYDIT-RRETFNHLSS-WLEDARQHA--NPNMSIMLVGNKCDL   75 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~---~ad~~i~v~d~~-~~~s~~~~~~-~~~~l~~~~--~~~~p~ilv~nK~D~   75 (163)
                      +...+.|.|  .||+.+.+.....+++   .+-+++||+|.. ......+..+ ++.-+....  ...+|+++..||.|+
T Consensus        80 gs~~~~LVD--~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl  157 (238)
T KOG0090|consen   80 GSENVTLVD--LPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL  157 (238)
T ss_pred             cCcceEEEe--CCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence            345567788  7999999988888887   799999999964 3444555544 444444442  356899999999998


Q ss_pred             CC
Q 031249           76 AH   77 (163)
Q Consensus        76 ~~   77 (163)
                      ..
T Consensus       158 ~t  159 (238)
T KOG0090|consen  158 FT  159 (238)
T ss_pred             hh
Confidence            64

>TIGR00101 ureG urease accessory protein UreG

Probab=98.30  E-value=3.3e-06  Score=61.46  Aligned_cols=79  Identities=19%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE--EEEeeCCCCCCCCccCHHHHHHHHHH--cCCeEEEEcCCCCC
Q 031249           31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI--MLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQ  106 (163)
Q Consensus        31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~--ilv~nK~D~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~  106 (163)
                      +|.+|.|+|+.+.++...  .+..        .+..  ++++||+|+........+.....++.  .+.+++++|+++|+
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~  182 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE  182 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            688999999987655321  1111        1233  89999999864212223344444443  45679999999999


Q ss_pred             CHHHHHHHHHHHH
Q 031249          107 NVEEAFIKTAAKI  119 (163)
Q Consensus       107 ~i~~lf~~l~~~~  119 (163)
                      |++++|+++.++.
T Consensus       183 gi~el~~~i~~~~  195 (199)
T TIGR00101       183 GLDTVIDWIEHYA  195 (199)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.29  E-value=5.9e-06  Score=64.57  Aligned_cols=122  Identities=20%  Similarity=0.225  Sum_probs=82.4

Q ss_pred             CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHH-------HHHHHHHHHHHHHhcC----CCCeEEEEe
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSSWLEDARQHAN----PNMSIMLVG   70 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s-------~~~~~~~~~~l~~~~~----~~~p~ilv~   70 (163)
                      +.+.++.+.|  .+||.--+..|.+++.+++++|||.+++..+.       .+.+.+-++.+....+    .++++||++
T Consensus       192 ~k~~~f~~~D--vGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL  269 (354)
T KOG0082|consen  192 IKGLKFRMFD--VGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL  269 (354)
T ss_pred             eCCCceEEEe--CCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence            4567788888  89999999999999999999999999876332       2223332333322222    469999999


Q ss_pred             eCCCCCCCCc---------------cCHHHHHHHHHH--------c--CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           71 NKCDLAHRRA---------------VSKEEGEQFAKE--------N--GLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        71 nK~D~~~~~~---------------v~~~~~~~~~~~--------~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      ||.|+-+++.               -..+++..+...        .  .+-+..++|.+..+|..+|......++....+
T Consensus       270 NK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk  349 (354)
T KOG0082|consen  270 NKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK  349 (354)
T ss_pred             ecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999843211               123333332211        1  12256668999999999999999988876544

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.27  E-value=1e-05  Score=58.27  Aligned_cols=108  Identities=14%  Similarity=0.131  Sum_probs=72.5

Q ss_pred             eeEeeecccc----------hhhhhhchhhhccC---CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249            7 SFFWSLLQAG----------QESFRSITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         7 ~~l~d~Dt~G----------~e~~~~~~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      +.|.|  .||          .+++..++..|++.   -.++++++|+.....-.+. +.++.+.+.   ++|++|++||+
T Consensus        72 ~~lVD--lPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~  145 (200)
T COG0218          72 LRLVD--LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKA  145 (200)
T ss_pred             EEEEe--CCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEcc
Confidence            55666  688          57778888888864   6788888898765433332 455555553   59999999999


Q ss_pred             CCCCCCccCHHHHHHHHHHcC----Ce--EEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           74 DLAHRRAVSKEEGEQFAKENG----LL--FLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        74 D~~~~~~v~~~~~~~~~~~~~----~~--~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      |.....+.. ......++...    ..  ++..|+.++.|++++-..|.+.+..
T Consensus       146 DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         146 DKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            986643321 22233333322    22  7788999999999998888776643

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.26  E-value=1e-05  Score=62.31  Aligned_cols=112  Identities=21%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             cceeeEeeecccch-----hhhhhc----hhhhccCCcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            4 SQESFFWSLLQAGQ-----ESFRSI----TRSYYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~-----e~~~~~----~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      ..++|+.|  |||.     +....+    +...-+=+++++|+||.+...  +.+.-..+++++...-  ..|+++|.||
T Consensus       214 ~~R~QvID--TPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK  289 (346)
T COG1084         214 YLRIQVID--TPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINK  289 (346)
T ss_pred             CceEEEec--CCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEec
Confidence            45788888  9994     111111    111223378999999987644  4555556777777665  3899999999


Q ss_pred             CCCCCCCccCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           73 CDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        73 ~D~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .|..+...  .+++......- +.....+++..+.+++.+-..+.....+
T Consensus       290 ~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         290 IDIADEEK--LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ccccchhH--HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhc
Confidence            99864333  23333333333 4447788888888888777777666443

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.18  E-value=1.5e-05  Score=60.95  Aligned_cols=98  Identities=21%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             hhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249           18 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL   96 (163)
Q Consensus        18 e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~   96 (163)
                      +|...+.+.-+.+.|-+++|+++.+++ +...+..++-.....   ++..+|++||+|+.++.....++........+++
T Consensus        67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~  143 (301)
T COG1162          67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYP  143 (301)
T ss_pred             cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCee
Confidence            566667777777889999999888765 455555665555443   4666788999999764333223455566778999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHH
Q 031249           97 FLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        97 ~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ++.+|++++.+++++...+...
T Consensus       144 v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         144 VLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             EEEecCcCcccHHHHHHHhcCC
Confidence            9999999999999888877543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.18  E-value=1.3e-05  Score=66.82  Aligned_cols=106  Identities=18%  Similarity=0.141  Sum_probs=74.5

Q ss_pred             ccceeeEeeecccchhhhh------hchhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~------~~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+..+++.|  .||.=...      ...+.|+.  +.|+++-|.|+++.+---   ..--++.+   -+.|++++.|+.|
T Consensus        48 ~~~~i~ivD--LPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnL---yltlQLlE---~g~p~ilaLNm~D  119 (653)
T COG0370          48 KGHEIEIVD--LPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNL---YLTLQLLE---LGIPMILALNMID  119 (653)
T ss_pred             cCceEEEEe--CCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHH---HHHHHHHH---cCCCeEEEeccHh
Confidence            456678888  69842221      13344443  579999999999864211   22223333   3589999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      .-+++.+ .-+..++.+..|+|+++++|++|.|++++...+.+
T Consensus       120 ~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~  161 (653)
T COG0370         120 EAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIE  161 (653)
T ss_pred             hHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence            8665444 34556678888999999999999999999988865

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=7e-06  Score=64.91  Aligned_cols=104  Identities=21%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHHHHHHHHH--HHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLE--DARQHANPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~--~l~~~~~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ..+-.+|+||+..|-.-.-.-+..||++|||+|+.+.+   .|..-.+..+  .+.... .-..+|++.||.|+++=++-
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde~  163 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCHH
Confidence            34556669999999887777888999999999998753   2211112111  122222 23568888999998752221


Q ss_pred             CHH----HHHHHHHHcCC-----eEEEEcCCCCCCHHHH
Q 031249           82 SKE----EGEQFAKENGL-----LFLEASARTAQNVEEA  111 (163)
Q Consensus        82 ~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~i~~l  111 (163)
                      -.+    +...+.+..|+     +|+++|+..|+|+.+.
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            122    23335555554     4999999999997653

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.16  E-value=4.5e-05  Score=58.77  Aligned_cols=50  Identities=26%  Similarity=0.189  Sum_probs=39.2

Q ss_pred             CeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +|.++|.||+|+..     .++...+.+..  .++.+||+.+.|++++.+.|...+-
T Consensus       240 ~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         240 KPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             eeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            79999999999843     45555555444  7899999999999999998877653

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.14  E-value=2.8e-06  Score=63.51  Aligned_cols=110  Identities=19%  Similarity=0.210  Sum_probs=57.1

Q ss_pred             eeeEeeecccchhhhhhchhhhc--------cCCcEEEEEEECC---ChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYY--------RGAAGALLVYDIT---RRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~--------~~ad~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+.|+|  ||||.++...|....        ...-++++++|+.   ++..|-.  .++-.+......+.|.|.|.||+|
T Consensus        92 ~y~l~D--tPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFD--TPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE----SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GG
T ss_pred             cEEEEe--CCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccC
Confidence            455666  999988877665544        5667899999975   3434432  222222111113589999999999


Q ss_pred             CCCCC--cc-----------------CH---HHHHHHHHHcCC--eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           75 LAHRR--AV-----------------SK---EEGEQFAKENGL--LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        75 ~~~~~--~v-----------------~~---~~~~~~~~~~~~--~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +.+..  ..                 ..   .....+...++.  .++++|+.+++++.+++..+-+.+
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            96521  00                 00   011111222232  599999999999999998886543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK00007 elongation factor G; Reviewed

Probab=98.13  E-value=2e-05  Score=67.33  Aligned_cols=92  Identities=17%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE   87 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~   87 (163)
                      ++..+||||+.+|..-....++.+|++++|+|+...-.... ...+..+.+.   ++|+++++||+|+.+..  ......
T Consensus        76 ~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~--~~~~~~  149 (693)
T PRK00007         76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD--FYRVVE  149 (693)
T ss_pred             EEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC--HHHHHH
Confidence            44445599999887767778899999999999876543333 2334444443   47999999999986532  223333


Q ss_pred             HHHHHcCCe----EEEEcCCCC
Q 031249           88 QFAKENGLL----FLEASARTA  105 (163)
Q Consensus        88 ~~~~~~~~~----~~~~Sa~~~  105 (163)
                      .+...++..    .+++|+.++
T Consensus       150 ~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        150 QIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHHHhCCCeeeEEecCccCCc
Confidence            444444432    455666554

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.11  E-value=1.9e-05  Score=63.09  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=77.0

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH----------HHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDARQHAN-PNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~~p~ilv~n   71 (163)
                      .+..+.++|  ++|+...+..|..++.+++++|||+++++-+          .+.+...+++.+..... ...|++|++|
T Consensus       234 ~~~~~~~~D--vGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~ln  311 (389)
T PF00503_consen  234 GSRKFRLID--VGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLN  311 (389)
T ss_dssp             TTEEEEEEE--ETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred             cccccceec--CCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeee
Confidence            456778888  7999999999999999999999999986421          23444455555544332 4699999999


Q ss_pred             CCCCCC-----CC-----------c--cCHHHHHHHHHH-c-----------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           72 KCDLAH-----RR-----------A--VSKEEGEQFAKE-N-----------GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        72 K~D~~~-----~~-----------~--v~~~~~~~~~~~-~-----------~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      |.|+-.     ..           .  -..+.+..+... +           .+.+..++|.+..++..+|+.+...|
T Consensus       312 K~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  312 KIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             -HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            999621     11           0  123444443322 1           12356889999899999998886643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01850 CDC_Septin CDC/Septin

Probab=98.11  E-value=1.3e-05  Score=61.19  Aligned_cols=74  Identities=12%  Similarity=0.095  Sum_probs=45.7

Q ss_pred             hhcc--CCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc--cCHHHHHHHHHHcCCeEEEE
Q 031249           26 SYYR--GAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLEA  100 (163)
Q Consensus        26 ~~~~--~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--v~~~~~~~~~~~~~~~~~~~  100 (163)
                      ..+.  .+|+++|+++.+.. .+... ...++.+..    .+|+++|+||+|+....+  .....+.+.+..++++++..
T Consensus       108 ~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~  182 (276)
T cd01850         108 PRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK----RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKF  182 (276)
T ss_pred             ccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc----cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECC
Confidence            3444  47777777776641 12111 234444432    489999999999865322  23455667788889998877


Q ss_pred             cCCC
Q 031249          101 SART  104 (163)
Q Consensus       101 Sa~~  104 (163)
                      ....
T Consensus       183 ~~~~  186 (276)
T cd01850         183 PEDE  186 (276)
T ss_pred             CCCc
Confidence            6543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.11  E-value=2.8e-05  Score=60.79  Aligned_cols=113  Identities=13%  Similarity=0.040  Sum_probs=69.5

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--CHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKE   84 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~~~   84 (163)
                      +-+..+||+|...-..   .....+|.+++|.+....+....+.   ..+.+     ..-++|+||.|+.+....  ...
T Consensus       149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence            3444455999653322   2466799999997755454444332   21222     223899999998653211  112


Q ss_pred             HHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 031249           85 EGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA  130 (163)
Q Consensus        85 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~  130 (163)
                      +.......       +..+++.+||.++.||+++++.+.+++....+....+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~  270 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA  270 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence            22222221       22579999999999999999999988776555554443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.10  E-value=2.4e-05  Score=57.14  Aligned_cols=81  Identities=17%  Similarity=0.135  Sum_probs=52.2

Q ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc--CCeEEEEcCCCCCC
Q 031249           30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASARTAQN  107 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~  107 (163)
                      ..+..+.|+|+.+.+....  .. ...     ...|.++++||+|+.+.......+.....+..  ..+++++||+++.|
T Consensus       123 ~~~~~i~Vvd~~~~d~~~~--~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~g  194 (207)
T TIGR00073       123 GEHMRVVLLSVTEGDDKPL--KY-PGM-----FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEG  194 (207)
T ss_pred             ccCeEEEEEecCcccchhh--hh-HhH-----HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            3456677888775432111  11 111     13578999999999653222233444444443  37799999999999


Q ss_pred             HHHHHHHHHHH
Q 031249          108 VEEAFIKTAAK  118 (163)
Q Consensus       108 i~~lf~~l~~~  118 (163)
                      ++++|+++.++
T Consensus       195 v~~l~~~i~~~  205 (207)
T TIGR00073       195 LDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHHh
Confidence            99999999774

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=7.3e-06  Score=66.02  Aligned_cols=120  Identities=19%  Similarity=0.156  Sum_probs=76.3

Q ss_pred             CccceeeEeeecccchhhh-hh--------chhhhccCCcEEEEEEEC--CChHHHHHHHHHHHHHHHhc------CCCC
Q 031249            2 FFSQESFFWSLLQAGQESF-RS--------ITRSYYRGAAGALLVYDI--TRRETFNHLSSWLEDARQHA------NPNM   64 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~-~~--------~~~~~~~~ad~~i~v~d~--~~~~s~~~~~~~~~~l~~~~------~~~~   64 (163)
                      ++|.++.|.|  |||..+- ..        --...+..||.+++|+|+  .+..+-..+...++....-.      ....
T Consensus       313 ~~G~~v~L~D--TAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~  390 (531)
T KOG1191|consen  313 VNGVPVRLSD--TAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQ  390 (531)
T ss_pred             cCCeEEEEEe--ccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEecccccc
Confidence            5788888888  9997551 11        124467899999999999  33333333334444432211      1247


Q ss_pred             eEEEEeeCCCCCCC-CccCHHHHHHHHHHcC---Ce-EEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           65 SIMLVGNKCDLAHR-RAVSKEEGEQFAKENG---LL-FLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        65 p~ilv~nK~D~~~~-~~v~~~~~~~~~~~~~---~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      |++++.||.|+..+ .+.+ .....+....+   ++ ..++|++++++++.+.+.+.+.+.....
T Consensus       391 ~~i~~~nk~D~~s~~~~~~-~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  391 RIILVANKSDLVSKIPEMT-KIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEechhhccCcccccc-CCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            99999999998653 1221 11111111122   33 5669999999999999999998887766

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.09  E-value=2.4e-05  Score=67.21  Aligned_cols=68  Identities=21%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ...++..+||||+.+|.......++.+|++|+|+|+...-... ....+....+.   +.|+++++||+|..
T Consensus        85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc---CCCeEEEEECchhh
Confidence            3566666779999999888888999999999999988653222 22333333332   36789999999974

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.09  E-value=5.4e-06  Score=71.07  Aligned_cols=67  Identities=21%  Similarity=0.165  Sum_probs=47.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ..++..+||||+.+|.......++.+|++|+|+|+.+....+. ...+..+..   .+.|+++++||+|..
T Consensus        85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhcc
Confidence            4444445599999998888899999999999999887432222 122233322   347889999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.07  E-value=3.5e-05  Score=61.69  Aligned_cols=51  Identities=20%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH-HHHHHHH
Q 031249           63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE-AFIKTAA  117 (163)
Q Consensus        63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-lf~~l~~  117 (163)
                      .+|+++|+||.|+....    .....+....+..++.+||+.+.++.+ +.+.+++
T Consensus       217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~  268 (396)
T PRK09602        217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLID  268 (396)
T ss_pred             CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence            48999999999974311    112222222344589999999999888 4444443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=1.2e-05  Score=61.19  Aligned_cols=86  Identities=23%  Similarity=0.227  Sum_probs=58.7

Q ss_pred             ecccchhhhhhchhhhccCCcEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCCccC---HH
Q 031249           12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAHRRAVS---KE   84 (163)
Q Consensus        12 ~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~-p~ilv~nK~D~~~~~~v~---~~   84 (163)
                      +|.||+..|-...-.-...+|+.|+|++++|..   +.+.+    -..++   -++ .++++.||+|+.++.++.   ..
T Consensus        80 VDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarq---vGvp~ivvflnK~Dmvdd~ellelVem  152 (394)
T COG0050          80 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQ---VGVPYIVVFLNKVDMVDDEELLELVEM  152 (394)
T ss_pred             ccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhh---cCCcEEEEEEecccccCcHHHHHHHHH
Confidence            568999999876666677899999999999853   33321    11222   345 456779999998755433   24


Q ss_pred             HHHHHHHHcCCe-----EEEEcCCC
Q 031249           85 EGEQFAKENGLL-----FLEASART  104 (163)
Q Consensus        85 ~~~~~~~~~~~~-----~~~~Sa~~  104 (163)
                      +.+.++..++++     ++.-||..
T Consensus       153 EvreLLs~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         153 EVRELLSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HHHHHHHHcCCCCCCcceeechhhh
Confidence            567788888875     66666644

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=7.1e-05  Score=59.71  Aligned_cols=108  Identities=17%  Similarity=0.057  Sum_probs=71.1

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ   88 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~   88 (163)
                      +-.+|+||+++|-.-.-.-+...|.++||++.++.-.-+. .+.+..+.- . .-...++|+||.|..++.++ .+...+
T Consensus        52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qt-gEhL~iLdl-l-gi~~giivltk~D~~d~~r~-e~~i~~  127 (447)
T COG3276          52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQT-GEHLLILDL-L-GIKNGIIVLTKADRVDEARI-EQKIKQ  127 (447)
T ss_pred             eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhh-HHHHHHHHh-c-CCCceEEEEeccccccHHHH-HHHHHH
Confidence            3445599999998766677778999999999965322221 112222221 1 12345999999998764322 233333


Q ss_pred             HHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           89 FAKEN---GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        89 ~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +....   ..+++.+|+++++||+++-+.|....-
T Consensus       128 Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         128 ILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             HHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            33333   355899999999999999999987764

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.98  E-value=3e-05  Score=59.92  Aligned_cols=103  Identities=14%  Similarity=-0.032  Sum_probs=61.8

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--H
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--E   84 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~--~   84 (163)
                      +-+..+||+|.-.-.   ...+..+|.++++-....   -.++..+...+.     .+|.++++||+|+........  .
T Consensus       127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence            334445599853221   235677899998865433   234433333332     367899999999864321110  0


Q ss_pred             HH----HHHHH---HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           85 EG----EQFAK---ENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        85 ~~----~~~~~---~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ..    ..+..   .+..+++++||+++.|++++++++.+...
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            00    11111   12245899999999999999999988744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.96  E-value=6.4e-05  Score=49.61  Aligned_cols=79  Identities=23%  Similarity=0.320  Sum_probs=58.0

Q ss_pred             hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEE
Q 031249           21 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA  100 (163)
Q Consensus        21 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~  100 (163)
                      ..+...+++.++++++||+.++.+++..+  |...+......+.|.++++||.|+.+...+..++..        .++++
T Consensus        37 ~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~  106 (124)
T smart00010       37 DVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAET  106 (124)
T ss_pred             hhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHH
Confidence            33456678899999999999999998765  777776655567899999999998543334433333        34567


Q ss_pred             cCCCCCCHH
Q 031249          101 SARTAQNVE  109 (163)
Q Consensus       101 Sa~~~~~i~  109 (163)
                      |++++.++.
T Consensus       107 s~~~~~~~~  115 (124)
T smart00010      107 SAKTPEEGE  115 (124)
T ss_pred             hCCCcchhh
Confidence            888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PTZ00416 elongation factor 2; Provisional

Probab=97.92  E-value=2.4e-05  Score=68.10  Aligned_cols=67  Identities=25%  Similarity=0.228  Sum_probs=50.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ...+..+||||+.+|..-....++.+|++|+|+|+...-.... ...++.+...   ++|+++++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence            3455566699999998888888999999999999987533332 3344555443   48999999999985

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.85  E-value=4.1e-05  Score=66.77  Aligned_cols=67  Identities=24%  Similarity=0.212  Sum_probs=50.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ...+..+||||+..|..-....++.+|++|+|+|+...-.... ...++.+..   .++|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence            4455566699999998888888899999999999987643332 233444444   348999999999985

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.84  E-value=7.3e-05  Score=61.45  Aligned_cols=89  Identities=24%  Similarity=0.296  Sum_probs=66.1

Q ss_pred             cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe-EEEEcCCCCCC
Q 031249           29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQN  107 (163)
Q Consensus        29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~  107 (163)
                      ..+|++.++||.+++.+|.-+...++.-...  ...|++.|++|.|+.+..+...-.-.+++.+++++ .+.+|.+....
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s  571 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS  571 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence            6799999999999999999877766555433  56999999999999764322222227799999987 56667765444


Q ss_pred             HHHHHHHHHHHHH
Q 031249          108 VEEAFIKTAAKIL  120 (163)
Q Consensus       108 i~~lf~~l~~~~~  120 (163)
                       .++|..|+....
T Consensus       572 -~~lf~kL~~~A~  583 (625)
T KOG1707|consen  572 -NELFIKLATMAQ  583 (625)
T ss_pred             -chHHHHHHHhhh
Confidence             788888876653

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.82  E-value=0.00047  Score=49.79  Aligned_cols=114  Identities=14%  Similarity=0.073  Sum_probs=61.9

Q ss_pred             cceeeEeeecccchhhhh-------h-c---hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEe
Q 031249            4 SQESFFWSLLQAGQESFR-------S-I---TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP--NMSIMLVG   70 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~-------~-~---~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ilv~   70 (163)
                      +..+.++|  |||-....       . +   +.....+.|++|||.++.+ .+-. ....++.+.+....  -.+++++.
T Consensus        48 ~~~i~viD--TPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~  123 (196)
T cd01852          48 GRRVNVID--TPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLF  123 (196)
T ss_pred             CeEEEEEE--CcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEE
Confidence            44455555  99953321       1 1   2223468999999999876 2221 22344444443221  25789999


Q ss_pred             eCCCCCCCCccC------HHHHHHHHHHcCCeEEEEcC-----CCCCCHHHHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVS------KEEGEQFAKENGLLFLEASA-----RTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        71 nK~D~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa-----~~~~~i~~lf~~l~~~~~~  121 (163)
                      |+.|...+..+.      ......+.+..+-.++..+.     ..+.++.++++.+-+.+.+
T Consensus       124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         124 TRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             ECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            999975533211      12344455555555555544     3455666666665544443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.77  E-value=0.00019  Score=47.26  Aligned_cols=61  Identities=18%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             cceeeEeeecccchhh----------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            4 SQESFFWSLLQAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      +..+.|+|  |||...          +....+ .+..+|+++||+|..+... +....+++.+.    ...|+++|+||
T Consensus        46 ~~~~~~vD--tpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   46 NKKFILVD--TPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TEEEEEEE--SSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             eeeEEEEe--CCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            44556666  999421          222333 3489999999999877322 22334445553    35899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG3596 Predicted GTPase [General function prediction only]

Probab=97.77  E-value=0.00018  Score=54.40  Aligned_cols=115  Identities=14%  Similarity=0.171  Sum_probs=76.7

Q ss_pred             CccceeeEeeecccchhh-------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            2 FFSQESFFWSLLQAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~-------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +.+..+.|||  |||-++       ++.+...++...|.++++.++.|+.---+. .++..+.... .+.|++++.|..|
T Consensus        84 ~~~~~l~lwD--tPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D  159 (296)
T COG3596          84 YDGENLVLWD--TPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQAD  159 (296)
T ss_pred             ccccceEEec--CCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhh
Confidence            4567888999  899544       667788899999999999999887432222 3444444333 3479999999999


Q ss_pred             CCCCC-------ccCHH--------HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           75 LAHRR-------AVSKE--------EGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        75 ~~~~~-------~v~~~--------~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ...+-       ..+..        ++....+...  .+++.++...+-|++.+...+++.+-
T Consensus       160 ~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         160 RAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             hhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            64321       01111        1221111111  35788889999999999999988765

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00036  Score=54.49  Aligned_cols=117  Identities=15%  Similarity=0.087  Sum_probs=69.3

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC-Cc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR-RA   80 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~-~~   80 (163)
                      .++++|+-.+|.||+...-..+-.-..-.|..++|+|+.....-+.++ -.+.++..     ...++|+||+|...+ +.
T Consensus        66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----~klvvvinkid~lpE~qr  140 (522)
T KOG0461|consen   66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----KKLVVVINKIDVLPENQR  140 (522)
T ss_pred             ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----cceEEEEeccccccchhh
Confidence            356778888889998775544444555678899999987643222222 23444433     357888888886432 11


Q ss_pred             -cC-HHHHHHHHHHc---C----CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           81 -VS-KEEGEQFAKEN---G----LLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        81 -v~-~~~~~~~~~~~---~----~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                       -. .+...++.+..   +    .+++++||..|.--++.+.+|...+.+++-
T Consensus       141 ~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if  193 (522)
T KOG0461|consen  141 ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF  193 (522)
T ss_pred             hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence             11 12223333322   2    579999999995555555555555554443

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=97.74  E-value=0.00014  Score=54.70  Aligned_cols=71  Identities=14%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHhcC-CCCeEEEEeeC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHAN-PNMSIMLVGNK   72 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK   72 (163)
                      -++|+++|  .+||..-+..|-+.+.+.-++|||..++.-          ..++....+++.++.++. ..+.+||++||
T Consensus       201 kv~FhMfD--VGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNK  278 (379)
T KOG0099|consen  201 KVNFHMFD--VGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNK  278 (379)
T ss_pred             ccceeeec--cCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecH
Confidence            45788888  799999999999999999999999987641          123333445555554433 34789999999


Q ss_pred             CCCC
Q 031249           73 CDLA   76 (163)
Q Consensus        73 ~D~~   76 (163)
                      .|+.
T Consensus       279 qDll  282 (379)
T KOG0099|consen  279 QDLL  282 (379)
T ss_pred             HHHH
Confidence            9974

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=97.68  E-value=0.00039  Score=56.57  Aligned_cols=96  Identities=13%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             CcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH---HHHHHHcCCeEEEEcCCCC
Q 031249           31 AAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG---EQFAKENGLLFLEASARTA  105 (163)
Q Consensus        31 ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~---~~~~~~~~~~~~~~Sa~~~  105 (163)
                      --+++|+.|++-..  |..+-..++..++-.- .++|+|+|+||+|+.....+..+..   ..+....++++++.|+.+.
T Consensus       248 raaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e  326 (620)
T KOG1490|consen  248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE  326 (620)
T ss_pred             hhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence            45788889988644  4444444555554433 5689999999999876666665543   3444555688999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhcc
Q 031249          106 QNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus       106 ~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      +||.++-.+....++...-+..
T Consensus       327 egVm~Vrt~ACe~LLa~RVE~K  348 (620)
T KOG1490|consen  327 EGVMDVRTTACEALLAARVEQK  348 (620)
T ss_pred             hceeeHHHHHHHHHHHHHHHHH
Confidence            9999999988888877765544

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=8.9e-05  Score=60.93  Aligned_cols=103  Identities=19%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHHHHHHHH--HHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWL--EDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~--~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .+..+|+||+..|.+-.-.-...||.+++|+|++...   .|+...+..  ..+.+..+ -..++|++||.|+.+=.+--
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~R  334 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQDR  334 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHHH
Confidence            3444569999999887777788999999999997532   333211211  22233332 35789999999986522211


Q ss_pred             HH----HHHHHH-HHcCC-----eEEEEcCCCCCCHHHH
Q 031249           83 KE----EGEQFA-KENGL-----LFLEASARTAQNVEEA  111 (163)
Q Consensus        83 ~~----~~~~~~-~~~~~-----~~~~~Sa~~~~~i~~l  111 (163)
                      .+    ....++ +..|+     .|++||+..|+|+...
T Consensus       335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            22    233445 44454     5999999999986533

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.60  E-value=0.00036  Score=40.18  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             cCCcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249           29 RGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus        29 ~~ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +=.++++|++|++...  +.++-..++++++..- .++|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            3468999999998654  4555556777777654 5799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>smart00053 DYNc Dynamin, GTPase

Probab=97.58  E-value=0.00028  Score=52.81  Aligned_cols=68  Identities=10%  Similarity=0.009  Sum_probs=43.4

Q ss_pred             eeEeeecccchh-------------hhhhchhhhccC-CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            7 SFFWSLLQAGQE-------------SFRSITRSYYRG-AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         7 ~~l~d~Dt~G~e-------------~~~~~~~~~~~~-ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      ..|..+||||-.             ....+...|+++ .+.+++|+|+...-+-.+...+.+.+..   ...|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence            455556699953             123367778884 5699999988653222232333344433   45899999999


Q ss_pred             CCCCC
Q 031249           73 CDLAH   77 (163)
Q Consensus        73 ~D~~~   77 (163)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.00011  Score=62.46  Aligned_cols=66  Identities=18%  Similarity=0.102  Sum_probs=50.7

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ..|..+||||+=+|..-....++-+|++++|+|+...-..+ ....+++..++   ++|.+++.||.|..
T Consensus        76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~~---~vp~i~fiNKmDR~  141 (697)
T COG0480          76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADKY---GVPRILFVNKMDRL  141 (697)
T ss_pred             eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhhc---CCCeEEEEECcccc
Confidence            45555559999999999999999999999999998753333 23344445444   48999999999974

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.00053  Score=53.44  Aligned_cols=88  Identities=23%  Similarity=0.140  Sum_probs=57.5

Q ss_pred             ecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC---HHHHHH
Q 031249           12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---KEEGEQ   88 (163)
Q Consensus        12 ~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~---~~~~~~   88 (163)
                      +|.||+.+|-...-.-....|++|+|+.++|..--+ ..+.+-..++..  -..++++.||.|++.+.+..   +-++++
T Consensus       122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RE  198 (449)
T KOG0460|consen  122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRE  198 (449)
T ss_pred             CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHH
Confidence            468999999876666677899999999999953221 222222233322  13567779999997543321   235678


Q ss_pred             HHHHcCCe-----EEEEcC
Q 031249           89 FAKENGLL-----FLEASA  102 (163)
Q Consensus        89 ~~~~~~~~-----~~~~Sa  102 (163)
                      ++.++|++     ++.=||
T Consensus       199 lLse~gf~Gd~~PvI~GSA  217 (449)
T KOG0460|consen  199 LLSEFGFDGDNTPVIRGSA  217 (449)
T ss_pred             HHHHcCCCCCCCCeeecch
Confidence            88888864     665554

>cd01882 BMS1 Bms1

Probab=97.53  E-value=0.00089  Score=49.57  Aligned_cols=92  Identities=15%  Similarity=0.061  Sum_probs=52.4

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCCccCHHH-
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAVSKEE-   85 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ilv~nK~D~~~~~~v~~~~-   85 (163)
                      ++..+||||.-  ..+ ...++.+|++++|+|.+....... ..++..+...   +.|. ++|+||.|+.+.... .++ 
T Consensus        84 ~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~-~~~~  155 (225)
T cd01882          84 RLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKT-LRKT  155 (225)
T ss_pred             eEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHH-HHHH
Confidence            34455599854  222 234688999999999876433222 2233444332   3674 559999998642211 122 


Q ss_pred             ---HHH-HHHH--cCCeEEEEcCCCCCC
Q 031249           86 ---GEQ-FAKE--NGLLFLEASARTAQN  107 (163)
Q Consensus        86 ---~~~-~~~~--~~~~~~~~Sa~~~~~  107 (163)
                         +.. +..+  .+.+++.+||++.-.
T Consensus       156 ~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         156 KKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             HHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence               211 2211  235699999998744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00043  Score=55.49  Aligned_cols=84  Identities=20%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG   86 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~   86 (163)
                      ..+..+||||++.|..=.=..+--+|.++.|+|+...-  +.  +.++.+.--+..++|++-+.||.|....  -+.+..
T Consensus        81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi--E~--qT~KLfeVcrlR~iPI~TFiNKlDR~~r--dP~ELL  154 (528)
T COG4108          81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI--EP--QTLKLFEVCRLRDIPIFTFINKLDREGR--DPLELL  154 (528)
T ss_pred             eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCc--cH--HHHHHHHHHhhcCCceEEEeeccccccC--ChHHHH
Confidence            34455569999999864444556799999999987641  11  2233333333357999999999997442  234444


Q ss_pred             HHHHHHcCCe
Q 031249           87 EQFAKENGLL   96 (163)
Q Consensus        87 ~~~~~~~~~~   96 (163)
                      .++-+..++.
T Consensus       155 dEiE~~L~i~  164 (528)
T COG4108         155 DEIEEELGIQ  164 (528)
T ss_pred             HHHHHHhCcc
Confidence            4444455543

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.00018  Score=60.33  Aligned_cols=68  Identities=25%  Similarity=0.316  Sum_probs=52.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +...-+..+||||+-.|..-....++-+|++++|+|+...-.++. ...++...+.   ..|+++|+||.|.
T Consensus       194 ~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq~---~~~i~vviNKiDR  261 (971)
T KOG0468|consen  194 GKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQN---RLPIVVVINKVDR  261 (971)
T ss_pred             CceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHhc---cCcEEEEEehhHH
Confidence            334455667799999999888889999999999999998776654 3344444343   4899999999995

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.46  E-value=0.00032  Score=49.04  Aligned_cols=63  Identities=17%  Similarity=0.154  Sum_probs=42.8

Q ss_pred             eeeEeeecccchh----hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249            6 ESFFWSLLQAGQE----SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         6 ~~~l~d~Dt~G~e----~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      ++.|+|  |||..    ....++..|++.+|++|+|.+++...+-.+...+.+.....   ...+++|.||.
T Consensus       102 ~~~lvD--tPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVD--TPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEE--EEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEe--CCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            456666  99953    33467888999999999999999865544444444444332   24588899984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.44  E-value=0.0036  Score=48.72  Aligned_cols=58  Identities=14%  Similarity=0.307  Sum_probs=45.5

Q ss_pred             CCeEEEEeeCCCCCC----CCcc-------CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           63 NMSIMLVGNKCDLAH----RRAV-------SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        63 ~~p~ilv~nK~D~~~----~~~v-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ++|++||.||+|...    +.+-       ....++.||-.+|...+.+|++...|++-+...|+..++
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence            689999999999732    2111       123467788889999999999999999999999887664

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.37  E-value=0.0023  Score=50.80  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=63.0

Q ss_pred             eeEeeecccchhhhhh--chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249            7 SFFWSLLQAGQESFRS--ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--   82 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~--~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--   82 (163)
                      +.|.|  |.|+|.|-.  +.-.+=...|..++++.+++..+.- ..+.+.-+...   ..|++++.||+|+..+..+.  
T Consensus       203 VsfVD--tvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a~---~lPviVvvTK~D~~~ddr~~~v  276 (527)
T COG5258         203 VSFVD--TVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALAM---ELPVIVVVTKIDMVPDDRFQGV  276 (527)
T ss_pred             EEEEe--cCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhhh---cCCEEEEEEecccCcHHHHHHH
Confidence            44555  999999854  3444567899999999999875432 12333333332   48999999999986532211  


Q ss_pred             HHHHHHHHH----------------------HcC---CeEEEEcCCCCCCHHHHH
Q 031249           83 KEEGEQFAK----------------------ENG---LLFLEASARTAQNVEEAF  112 (163)
Q Consensus        83 ~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~i~~lf  112 (163)
                      .+++..+++                      ..+   .|++.+|+.+++|.+-+.
T Consensus       277 ~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~  331 (527)
T COG5258         277 VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD  331 (527)
T ss_pred             HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH
Confidence            122222211                      111   368999999999965443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.35  E-value=0.0017  Score=52.24  Aligned_cols=88  Identities=11%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             hhhcc-CCcEEEEEE-ECC----ChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 031249           25 RSYYR-GAAGALLVY-DIT----RRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLF   97 (163)
Q Consensus        25 ~~~~~-~ad~~i~v~-d~~----~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~   97 (163)
                      +..+. ++|+.|+|. |.+    .++.+.. -..+++++++..   +|++++.|+.|-..+  .+.+....+...++.++
T Consensus       138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~---kPfiivlN~~dp~~~--et~~l~~~l~eky~vpv  212 (492)
T TIGR02836       138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELN---KPFIILLNSTHPYHP--ETEALRQELEEKYDVPV  212 (492)
T ss_pred             HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcC---CCEEEEEECcCCCCc--hhHHHHHHHHHHhCCce
Confidence            44455 899999999 663    1122333 345888887754   999999999993221  13344456667778887


Q ss_pred             EEEcC--CCCCCHHHHHHHHHH
Q 031249           98 LEASA--RTAQNVEEAFIKTAA  117 (163)
Q Consensus        98 ~~~Sa--~~~~~i~~lf~~l~~  117 (163)
                      +.+|+  .+..+|..+|+.++.
T Consensus       213 l~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       213 LAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             EEEEHHHcCHHHHHHHHHHHHh
Confidence            77776  444556666665543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.35  E-value=0.00095  Score=54.95  Aligned_cols=104  Identities=17%  Similarity=0.344  Sum_probs=79.3

Q ss_pred             hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC--CCccCHHHHHHHH-HHcCCeEEE
Q 031249           24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH--RRAVSKEEGEQFA-KENGLLFLE   99 (163)
Q Consensus        24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~--~~~v~~~~~~~~~-~~~~~~~~~   99 (163)
                      -.+|...+|++||||.+.+..+|+.+..+...+..+.. ..+|+++++++--...  .+.+...++..++ +...+.+|+
T Consensus        89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e  168 (749)
T KOG0705|consen   89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE  168 (749)
T ss_pred             hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence            36688889999999999999999998887777755443 4689999988754322  3444555555554 445677999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249          100 ASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus       100 ~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      .++..|-+++.+|+.+...++....+..
T Consensus       169 t~atyGlnv~rvf~~~~~k~i~~~~~qq  196 (749)
T KOG0705|consen  169 TCATYGLNVERVFQEVAQKIVQLRKYQQ  196 (749)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999998887744433

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.30  E-value=0.0011  Score=50.27  Aligned_cols=114  Identities=18%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             eeEeeecccch-hhhhh-----chhhhccCC--cEEEEEEEC---CChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            7 SFFWSLLQAGQ-ESFRS-----ITRSYYRGA--AGALLVYDI---TRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         7 ~~l~d~Dt~G~-e~~~~-----~~~~~~~~a--d~~i~v~d~---~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +....+||||| |-|..     ++...+...  -++++|+|.   +.+.+|-. +...-.-+.+   ...|+|++.||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence            34445569997 33432     333333332  355566664   33444533 1112222333   3589999999999


Q ss_pred             CCCCCccCH-----HHHHHHHH-------------------H--cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSK-----EEGEQFAK-------------------E--NGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        75 ~~~~~~v~~-----~~~~~~~~-------------------~--~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +.+..-...     +..+....                   +  .++..+-||+.+|.|.++.|..+-..+-++.
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE  267 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence            865321110     00111111                   1  1355899999999999999998877766553

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=97.28  E-value=0.0011  Score=49.15  Aligned_cols=71  Identities=25%  Similarity=0.403  Sum_probs=51.1

Q ss_pred             cceeeEeeecccchhhhhh-----chhhhccCCcEEEEEEECCChHHHHHHH---HHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFRS-----ITRSYYRGAAGALLVYDITRRETFNHLS---SWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~-----~~~~~~~~ad~~i~v~d~~~~~s~~~~~---~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +.-+.+||  .+||+.|-.     -....+++.+++|+|||+...+-..++.   ..++.+.++. |...+....+|.|+
T Consensus        52 nl~LnlwD--cGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDL  128 (295)
T KOG3886|consen   52 NLVLNLWD--CGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDL  128 (295)
T ss_pred             hheeehhc--cCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechh
Confidence            35667788  799985432     3455789999999999998765444443   3455566554 66788889999998


Q ss_pred             CC
Q 031249           76 AH   77 (163)
Q Consensus        76 ~~   77 (163)
                      ..
T Consensus       129 v~  130 (295)
T KOG3886|consen  129 VQ  130 (295)
T ss_pred             cc
Confidence            65

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.25  E-value=0.0032  Score=44.63  Aligned_cols=84  Identities=25%  Similarity=0.243  Sum_probs=56.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      ++.+..+||||...  ......+..+|.++++...+ ..+...+..+++.+.+.   +.|+.+|+||.|...   -...+
T Consensus        92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~~  162 (179)
T cd03110          92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAEE  162 (179)
T ss_pred             CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHHH
Confidence            34444555886432  23345678899999999877 44666777777776654   367899999999633   13456


Q ss_pred             HHHHHHHcCCeEE
Q 031249           86 GEQFAKENGLLFL   98 (163)
Q Consensus        86 ~~~~~~~~~~~~~   98 (163)
                      +.+++++.+++++
T Consensus       163 ~~~~~~~~~~~vl  175 (179)
T cd03110         163 IEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHcCCCeE
Confidence            7778888888754

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.02  E-value=0.0018  Score=50.59  Aligned_cols=92  Identities=23%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             cc-hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249           15 AG-QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN   93 (163)
Q Consensus        15 ~G-~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~   93 (163)
                      +| ..++.......+..+|.++-|.|+-++.+...  ..++.+..    ..|.++|+||.|+.... +..+=...+.++.
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~----~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~   90 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK----EKPKLLVLNKADLAPKE-VTKKWKKYFKKEE   90 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc----cCCcEEEEehhhcCCHH-HHHHHHHHHHhcC
Confidence            55 45677778889999999999999999875543  12233322    35669999999995422 2122222233333


Q ss_pred             CCeEEEEcCCCCCCHHHHHH
Q 031249           94 GLLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        94 ~~~~~~~Sa~~~~~i~~lf~  113 (163)
                      +...+.++++.+.+...+..
T Consensus        91 ~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          91 GIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             CCccEEEEeecccCccchHH
Confidence            56677788888777666664

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.00  E-value=0.008  Score=49.30  Aligned_cols=59  Identities=14%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             CCeEEEEeeCCCCCC----CCc-------cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           63 NMSIMLVGNKCDLAH----RRA-------VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        63 ~~p~ilv~nK~D~~~----~~~-------v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ++|++||++|.|...    +..       ......+.+|-.+|...+.+|++...+++-++..|+..+..
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~  265 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYG  265 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence            479999999999632    111       11234677888899999999999999999888887666544

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.001  Score=51.27  Aligned_cols=106  Identities=19%  Similarity=0.176  Sum_probs=68.2

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--C
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S   82 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~   82 (163)
                      +-.+|.||++-.-+..-.-..-.|++++++..+.    +++-+.+..  -++.+.    +.++++-||+|+..+.+.  .
T Consensus       127 VSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L----khiiilQNKiDli~e~~A~eq  200 (466)
T KOG0466|consen  127 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL----KHIIILQNKIDLIKESQALEQ  200 (466)
T ss_pred             EEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh----ceEEEEechhhhhhHHHHHHH
Confidence            3445689998765433333445688999987664    444444322  112222    568999999999664322  1


Q ss_pred             HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        83 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .+++..|.+..   +.+++++||.-+.||+.+.+.+++.+-
T Consensus       201 ~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  201 HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            23344454433   467999999999999999999887653

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.005  Score=51.35  Aligned_cols=66  Identities=17%  Similarity=0.081  Sum_probs=49.0

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ..|..+||||+-.|.--.+..++--|++++|++....--- .....++++.++.   +|.+-+.||.|..
T Consensus       104 ~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~ry~---vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  104 YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVES-QTETVWRQMKRYN---VPRICFINKMDRM  169 (721)
T ss_pred             ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHhcC---CCeEEEEehhhhc
Confidence            3444555999999999899999999999999997653211 1233455666654   8999999999963

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.90  E-value=0.0027  Score=45.15  Aligned_cols=44  Identities=27%  Similarity=0.148  Sum_probs=28.0

Q ss_pred             cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249           32 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus        32 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      |++++|.|+.++.+... ..+.+.+. ....++|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987643321 12222221 1123589999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.017  Score=43.28  Aligned_cols=116  Identities=22%  Similarity=0.292  Sum_probs=69.8

Q ss_pred             ceeeEeeecccchhhhh-hc--hhhhccCCcEEEEEEECCChHHHHHHHH---HHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031249            5 QESFFWSLLQAGQESFR-SI--TRSYYRGAAGALLVYDITRRETFNHLSS---WLEDARQHANPNMSIMLVGNKCDLAH-   77 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~-~~--~~~~~~~ad~~i~v~d~~~~~s~~~~~~---~~~~l~~~~~~~~p~ilv~nK~D~~~-   77 (163)
                      +++++||  .|||-.|- +-  -...++.+-++|||+|+-+.- .+++..   .+....+. ++++.+=+.+.|.|-.. 
T Consensus        75 inf~v~d--fPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen   75 INFQVWD--FPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             cceEEee--cCCccccCCCccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheeec-CCCceEEEEEEeccCCch
Confidence            4688999  69986543 22  356789999999999986531 233322   33333222 26788888999999533 


Q ss_pred             CCccCH-----HHHHHHHHHcCC-----eEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           78 RRAVSK-----EEGEQFAKENGL-----LFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        78 ~~~v~~-----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      +-.+..     +....-+...|.     .|+.+| .-...|.+.|..+++.++..+.-
T Consensus       151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-IyDHSIfEAFSkvVQkLipqLpt  207 (347)
T KOG3887|consen  151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-IYDHSIFEAFSKVVQKLIPQLPT  207 (347)
T ss_pred             hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-ecchHHHHHHHHHHHHHhhhchh
Confidence            222211     112222222332     355544 44577899999998888776543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.76  E-value=0.0039  Score=47.91  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=38.5

Q ss_pred             CeEEEEeeCCCCCCCCccCHHHHHHHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .+-++|+||+|+........+......+.  ...+++++|+++++|+++++++|...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            56799999999964211123333333333  24679999999999999999999763

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=96.73  E-value=0.0097  Score=46.17  Aligned_cols=80  Identities=6%  Similarity=-0.063  Sum_probs=42.7

Q ss_pred             ccceeeEeeecccchhhhhh-------chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRS-------ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~-------~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~n   71 (163)
                      .|..+.+||  |||......       ....++  ...|++|||..++.......-...++.+...-+  .-.+.||+.|
T Consensus        84 ~G~~l~VID--TPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfT  161 (313)
T TIGR00991        84 AGFTLNIID--TPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLT  161 (313)
T ss_pred             CCeEEEEEE--CCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEE
Confidence            345666666  999654322       122222  269999999765532111111223344433321  1257899999


Q ss_pred             CCCCCCCCccCHH
Q 031249           72 KCDLAHRRAVSKE   84 (163)
Q Consensus        72 K~D~~~~~~v~~~   84 (163)
                      +.|...+...+.+
T Consensus       162 h~d~~~pd~~~~e  174 (313)
T TIGR00991       162 HAQFSPPDGLEYN  174 (313)
T ss_pred             CCccCCCCCCCHH
Confidence            9997644444433

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.0015  Score=51.51  Aligned_cols=67  Identities=15%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             Eeeecccchh-----------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            9 FWSLLQAGQE-----------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         9 l~d~Dt~G~e-----------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +-.+||||.-           .|.....=++..+|.||++||+...+--......+..++.+   .-.+-||+||.|.++
T Consensus       149 vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  149 VTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKIRVVLNKADQVD  225 (532)
T ss_pred             eeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cceeEEEeccccccC
Confidence            4445599941           24445666889999999999987654334444556666543   357889999999865


Q ss_pred             C
Q 031249           78 R   78 (163)
Q Consensus        78 ~   78 (163)
                      .
T Consensus       226 t  226 (532)
T KOG1954|consen  226 T  226 (532)
T ss_pred             H
Confidence            3

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=96.60  E-value=0.038  Score=41.15  Aligned_cols=81  Identities=23%  Similarity=0.255  Sum_probs=54.1

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +...+.+.|. .||.|.|.   +...+++|.+|.|.|.+. .++..... ++++.+... =.++.+|+||.|..      
T Consensus       132 ~~~e~VivDt-EAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg-~k~i~~V~NKv~e~------  198 (255)
T COG3640         132 NRYEVVIVDT-EAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG-IKRIFVVLNKVDEE------  198 (255)
T ss_pred             ccCcEEEEec-ccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC-CceEEEEEeeccch------
Confidence            3456778886 78999987   788899999999999884 45554433 333333331 27899999999952      


Q ss_pred             HHHHHHHHHHcCCe
Q 031249           83 KEEGEQFAKENGLL   96 (163)
Q Consensus        83 ~~~~~~~~~~~~~~   96 (163)
                      .......+...+.+
T Consensus       199 e~~~~~~~~~~~~~  212 (255)
T COG3640         199 EELLRELAEELGLE  212 (255)
T ss_pred             hHHHHhhhhccCCe
Confidence            23344444555543

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.53  E-value=0.0068  Score=43.77  Aligned_cols=53  Identities=25%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             EEEeeCCCCCCCCccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           67 MLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        67 ilv~nK~D~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++|+||.|+...-....+....-+++.  +.+++++|.++|+|++++++++....
T Consensus       146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            789999999664444445555444443  46799999999999999999886643

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.022  Score=48.20  Aligned_cols=91  Identities=18%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             eeEeeecccch---hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            7 SFFWSLLQAGQ---ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         7 ~~l~d~Dt~G~---e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +.+.|  .||.   ....+.+..+..++|++|||..+.+..+..+. +++....+.   +.-++++.||+|....+.-..
T Consensus       208 ivliD--sPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~---KpniFIlnnkwDasase~ec~  281 (749)
T KOG0448|consen  208 IVLID--SPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE---KPNIFILNNKWDASASEPECK  281 (749)
T ss_pred             ceecc--CCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc---CCcEEEEechhhhhcccHHHH
Confidence            34444  7884   45666778899999999999999887655543 333333332   245666788889866544444


Q ss_pred             HHHHHHHHHcCC--------eEEEEcCC
Q 031249           84 EEGEQFAKENGL--------LFLEASAR  103 (163)
Q Consensus        84 ~~~~~~~~~~~~--------~~~~~Sa~  103 (163)
                      +.+..-..+.+.        -+++||++
T Consensus       282 e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  282 EDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             HHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            444444334432        27888865

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.36  E-value=0.02  Score=41.89  Aligned_cols=116  Identities=16%  Similarity=0.080  Sum_probs=59.2

Q ss_pred             ccceeeEeeecccchh-------hhhh-c---hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEE
Q 031249            3 FSQESFFWSLLQAGQE-------SFRS-I---TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP--NMSIMLV   69 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e-------~~~~-~---~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ilv   69 (163)
                      .|..+.++|  |||--       .... +   ......+.|+||||+.+... +-. -...++.+.+.-++  -.-++||
T Consensus        47 ~g~~v~VID--TPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~-~~~~l~~l~~~FG~~~~k~~ivv  122 (212)
T PF04548_consen   47 DGRQVTVID--TPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEE-DREVLELLQEIFGEEIWKHTIVV  122 (212)
T ss_dssp             TTEEEEEEE----SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHH-HHHHHHHHHHHHCGGGGGGEEEE
T ss_pred             cceEEEEEe--CCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHH-HHHHHHHHHHHccHHHHhHhhHH
Confidence            455666666  99931       1111 1   12335679999999998832 211 12233334333221  1458888


Q ss_pred             eeCCCCCCCCccC-------HHHHHHHHHHcCCeEEEEcCC------CCCCHHHHHHHHHHHHHHH
Q 031249           70 GNKCDLAHRRAVS-------KEEGEQFAKENGLLFLEASAR------TAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        70 ~nK~D~~~~~~v~-------~~~~~~~~~~~~~~~~~~Sa~------~~~~i~~lf~~l~~~~~~~  122 (163)
                      .|..|...+..+.       ......+.+..+-.|+.++.+      +...+.++|..+-..+.++
T Consensus       123 fT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  123 FTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            8988865544321       112345566667667777766      2234556665554444443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PTZ00258 GTP-binding protein; Provisional

Probab=96.30  E-value=0.037  Score=44.38  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=28.7

Q ss_pred             CCeEEEEeeCC--CCCCCCccCHHHHHHHHHHc-CCeEEEEcCCCCC
Q 031249           63 NMSIMLVGNKC--DLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQ  106 (163)
Q Consensus        63 ~~p~ilv~nK~--D~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~  106 (163)
                      .+|+++|+|+.  |+.....-..+.+..++... +.+++.+||+-..
T Consensus       220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            48999999999  65211111334555666666 4789999986544

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.16  E-value=0.02  Score=47.04  Aligned_cols=69  Identities=19%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             hccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc---CCeEEEEc
Q 031249           27 YYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN---GLLFLEAS  101 (163)
Q Consensus        27 ~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~---~~~~~~~S  101 (163)
                      .+..+|+|+.++|+-++--|.  ++..++.++.    +.+-.+|+.||.||     ++.+....|+..+   ++++++.|
T Consensus       171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDL-----l~~~qr~aWa~YF~~~ni~~vf~S  241 (562)
T KOG1424|consen  171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADL-----LPPEQRVAWAEYFRQNNIPVVFFS  241 (562)
T ss_pred             HHhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhc-----CCHHHHHHHHHHHHhcCceEEEEe
Confidence            456899999999999986653  3444444442    33678999999999     4456666665544   68888888


Q ss_pred             CCC
Q 031249          102 ART  104 (163)
Q Consensus       102 a~~  104 (163)
                      |..
T Consensus       242 A~~  244 (562)
T KOG1424|consen  242 ALA  244 (562)
T ss_pred             ccc
Confidence            876

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.05  E-value=0.0051  Score=46.38  Aligned_cols=95  Identities=14%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHH-------cCCeEE
Q 031249           26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFL   98 (163)
Q Consensus        26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~-------~~~~~~   98 (163)
                      ....-+|.+++|.-..-.+..+.++.=+-++        .=++|.||.|.+.. .....+.......       +..+++
T Consensus       138 ~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA-~~~~~~l~~~l~l~~~~~~~W~ppV~  208 (266)
T PF03308_consen  138 DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGA-DRTVRDLRSMLHLLREREDGWRPPVL  208 (266)
T ss_dssp             HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHH-HHHHHHHHHHHHHCSTSCTSB--EEE
T ss_pred             HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHH-HHHHHHHHHHHhhccccccCCCCCEE
Confidence            3567789999999876655554433322222        22888999996331 1122333333322       234699


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249           99 EASARTAQNVEEAFIKTAAKILQNIQEGALD  129 (163)
Q Consensus        99 ~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~  129 (163)
                      .+||.++.||+++++.+.++..........+
T Consensus       209 ~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~  239 (266)
T PF03308_consen  209 KTSALEGEGIDELWEAIDEHRDYLKESGELE  239 (266)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHcchHH
Confidence            9999999999999999988776666554433

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=95.94  E-value=0.15  Score=36.19  Aligned_cols=89  Identities=8%  Similarity=0.051  Sum_probs=63.8

Q ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249           30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  109 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  109 (163)
                      ..|-|+|++|.....|+...+.-+..+-..-.-++ +.++++-....+.-.+...++.+++..+..+++.+.-.+..+..
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~  142 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT  142 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence            57999999999999988887776666533222334 44455554444445688999999999999999988887776666


Q ss_pred             HHHHHHHHHH
Q 031249          110 EAFIKTAAKI  119 (163)
Q Consensus       110 ~lf~~l~~~~  119 (163)
                      .+-+.|++.+
T Consensus       143 ~lAqRLL~~l  152 (176)
T PF11111_consen  143 SLAQRLLRML  152 (176)
T ss_pred             HHHHHHHHHH
Confidence            6666665544

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG2484 consensus GTPase [General function prediction only]

Probab=95.86  E-value=0.02  Score=45.59  Aligned_cols=67  Identities=22%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             hhhhhchhhhccCCcEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249           18 ESFRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN   93 (163)
Q Consensus        18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~   93 (163)
                      ..|..-....+..+|+||.|.|+-|+.+-..  +..|   +.+.. .++..|+|+||+|+     |+.+....|+..+
T Consensus       134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~---V~~~~-gnKkLILVLNK~DL-----VPrEv~e~Wl~YL  202 (435)
T KOG2484|consen  134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEA---VLQAH-GNKKLILVLNKIDL-----VPREVVEKWLVYL  202 (435)
T ss_pred             HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHH---HHhcc-CCceEEEEeehhcc-----CCHHHHHHHHHHH
Confidence            4455556677789999999999999876543  2222   22222 34789999999999     5667777776655

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=95.80  E-value=0.054  Score=40.82  Aligned_cols=71  Identities=10%  Similarity=0.044  Sum_probs=39.6

Q ss_pred             cceeeEeeecccchhhhh--h--------chhhhcc--CCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCC--CCeEEE
Q 031249            4 SQESFFWSLLQAGQESFR--S--------ITRSYYR--GAAGALLVYDITRRE-TFNHLSSWLEDARQHANP--NMSIML   68 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~--~--------~~~~~~~--~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~il   68 (163)
                      +..+.+||  |||-....  .        ....|++  ..|+++||..++... .+.+ ...++.+.+....  -.++++
T Consensus        78 g~~i~vID--TPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~iv  154 (249)
T cd01853          78 GFKLNIID--TPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIV  154 (249)
T ss_pred             CeEEEEEE--CCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEE
Confidence            44566666  99954331  0        1233443  578888887665432 2221 2344444433221  157999


Q ss_pred             EeeCCCCCC
Q 031249           69 VGNKCDLAH   77 (163)
Q Consensus        69 v~nK~D~~~   77 (163)
                      |.||.|...
T Consensus       155 V~T~~d~~~  163 (249)
T cd01853         155 VLTHAASSP  163 (249)
T ss_pred             EEeCCccCC
Confidence            999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=95.62  E-value=0.017  Score=49.38  Aligned_cols=60  Identities=28%  Similarity=0.326  Sum_probs=43.9

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+.-+|+||+-+|.+......+=+|++++++|+...   ++..-+    ++.+.   .+..++||+||+|
T Consensus        73 ~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vl----rq~~~---~~~~~~lvinkid  135 (887)
T KOG0467|consen   73 LINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVL----RQAWI---EGLKPILVINKID  135 (887)
T ss_pred             EEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHH----HHHHH---ccCceEEEEehhh
Confidence            344445999999999999999999999999998754   233322    22222   2356799999999

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=95.43  E-value=0.11  Score=41.70  Aligned_cols=86  Identities=16%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             chhhhc---cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcC----C
Q 031249           23 ITRSYY---RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG----L   95 (163)
Q Consensus        23 ~~~~~~---~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~----~   95 (163)
                      +|...|   ..+|++|-|.|+-|+..-.  ...++...+...+-+.+|+|+||+||     ++..-...|...+.    .
T Consensus       203 IW~ELyKViDSSDVvvqVlDARDPmGTr--c~~ve~ylkke~phKHli~vLNKvDL-----VPtwvt~~Wv~~lSkeyPT  275 (572)
T KOG2423|consen  203 IWGELYKVIDSSDVVVQVLDARDPMGTR--CKHVEEYLKKEKPHKHLIYVLNKVDL-----VPTWVTAKWVRHLSKEYPT  275 (572)
T ss_pred             HHHHHHHhhcccceeEEeeeccCCcccc--cHHHHHHHhhcCCcceeEEEeecccc-----ccHHHHHHHHHHHhhhCcc
Confidence            455544   5799999999999875332  23334443333356789999999999     45555555555443    3


Q ss_pred             eEEEEcCCCCCCHHHHHHHH
Q 031249           96 LFLEASARTAQNVEEAFIKT  115 (163)
Q Consensus        96 ~~~~~Sa~~~~~i~~lf~~l  115 (163)
                      --|-.|..+..|-..+++.|
T Consensus       276 iAfHAsi~nsfGKgalI~ll  295 (572)
T KOG2423|consen  276 IAFHASINNSFGKGALIQLL  295 (572)
T ss_pred             eeeehhhcCccchhHHHHHH
Confidence            35666777777755555544

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=95.39  E-value=0.046  Score=41.60  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=54.2

Q ss_pred             CCcEEEEEEECCChH-------HHH----HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH--HHHHHHHHcCCe
Q 031249           30 GAAGALLVYDITRRE-------TFN----HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE--EGEQFAKENGLL   96 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~-------s~~----~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~--~~~~~~~~~~~~   96 (163)
                      -.+|+|+++|+.+..       .+.    .+..-+.++.+......||.||+||+|+...-..-..  ......+.+|+.
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t  104 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT  104 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence            469999999985421       112    2233455555555568999999999998653110000  011122334544


Q ss_pred             EEEEcCCCCCC---HHHHHHHHHHHHHHHHhhc
Q 031249           97 FLEASARTAQN---VEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        97 ~~~~Sa~~~~~---i~~lf~~l~~~~~~~~~~~  126 (163)
                      +-.-.......   +.+.|..++..+.......
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  137 (266)
T PF14331_consen  105 FPYDEDADGDAWAWFDEEFDELVARLNARVLER  137 (266)
T ss_pred             cCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222333333   7777777777777665553

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.35  E-value=0.087  Score=35.87  Aligned_cols=63  Identities=6%  Similarity=0.120  Sum_probs=42.5

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +.++|  +++.  ........+..+|.++++.+.+ ..++..+...++.+.+.. ...++.+|.|+.+.
T Consensus        47 ~VIiD--~p~~--~~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          47 YIIID--TGAG--ISDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             EEEEE--CCCC--CCHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            34444  6653  2333457889999999999876 556666666666665543 34577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=95.19  E-value=0.024  Score=42.30  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=73.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD   74 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D   74 (163)
                      .+.+.|  .+|+..-+..|-.++.+.-.++|+...+.          +...+.-..++..+..+.. .+.++|+++||.|
T Consensus       200 ifrmvD--vGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD  277 (359)
T KOG0085|consen  200 IFRMVD--VGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  277 (359)
T ss_pred             eeeeee--cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence            344555  89999888899999999888888776532          2223333334444444433 4689999999999


Q ss_pred             CCCCCc----------------cCHHHHHHHHHH-c---C-----C-eEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           75 LAHRRA----------------VSKEEGEQFAKE-N---G-----L-LFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        75 ~~~~~~----------------v~~~~~~~~~~~-~---~-----~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +.+++-                ...+-++.+.-. +   +     + --..++|.+.+||.-+|..+...+++..
T Consensus       278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            865322                112223333221 1   1     1 1245678888999999998887777654

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.18  E-value=0.35  Score=37.46  Aligned_cols=94  Identities=14%  Similarity=0.031  Sum_probs=59.2

Q ss_pred             hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHH---------HcCCe
Q 031249           26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK---------ENGLL   96 (163)
Q Consensus        26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~---------~~~~~   96 (163)
                      ...+-+|.+++|.-..-.+..+.++.   -+.+..     =++|+||.|... .+....+.....+         .+..+
T Consensus       160 ~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----Di~vINKaD~~~-A~~a~r~l~~al~~~~~~~~~~~W~pp  230 (323)
T COG1703         160 DIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----DIIVINKADRKG-AEKAARELRSALDLLREVWRENGWRPP  230 (323)
T ss_pred             HHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----heeeEeccChhh-HHHHHHHHHHHHHhhcccccccCCCCc
Confidence            35567899999987665554554433   222222     278899999533 1112222222111         12245


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249           97 FLEASARTAQNVEEAFIKTAAKILQNIQEGAL  128 (163)
Q Consensus        97 ~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~  128 (163)
                      ++.++|..++||+++++.+..+..........
T Consensus       231 v~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~  262 (323)
T COG1703         231 VVTTSALEGEGIDELWDAIEDHRKFLTESGLF  262 (323)
T ss_pred             eeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999998887776665543

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=95.07  E-value=0.27  Score=39.32  Aligned_cols=98  Identities=19%  Similarity=0.197  Sum_probs=59.8

Q ss_pred             eeEeeecccchhhhhhchhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc---
Q 031249            7 SFFWSLLQAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV---   81 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v---   81 (163)
                      +-|.|  .||+.+|....-.-+  -.-|.+.+|++++..-+- ...+.+..+...   ++|++++.+|+|+..+..+   
T Consensus       251 vTfiD--LAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~t  324 (591)
T KOG1143|consen  251 VTFID--LAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKT  324 (591)
T ss_pred             EEEee--cccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHHh---CCCeEEEEEeeccccchhHHHH
Confidence            44555  799999876433222  235778888887754321 123445555554   4999999999998654111   


Q ss_pred             ---------------------CHHHHHHHHHHc----CCeEEEEcCCCCCCHHH
Q 031249           82 ---------------------SKEEGEQFAKEN----GLLFLEASARTAQNVEE  110 (163)
Q Consensus        82 ---------------------~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~  110 (163)
                                           +..++...+.+.    -.|+|-+|..+|+++.-
T Consensus       325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l  378 (591)
T KOG1143|consen  325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL  378 (591)
T ss_pred             HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence                                 122333333332    24688899999999653

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=95.05  E-value=0.03  Score=46.15  Aligned_cols=66  Identities=23%  Similarity=0.224  Sum_probs=47.0

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCC
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      ..|.|.-+|.||+-.|.+-....++-.||++.|+|..+.--.+. ...+ +.+.++    +.-+|+.||.|.
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~ER----IkPvlv~NK~DR  162 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAER----IKPVLVMNKMDR  162 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHhh----ccceEEeehhhH
Confidence            35666666699999999999999999999999999987532221 2222 233332    344788999994

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=94.86  E-value=0.027  Score=45.09  Aligned_cols=105  Identities=23%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC--c--
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRR--A--   80 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~--~--   80 (163)
                      +-.+|+||+..|-.-.-.-..+||..++|.++..   ..-|+.-.+..+...-... .-...|+++||.|.+...  .  
T Consensus       159 ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eR  238 (501)
T KOG0459|consen  159 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER  238 (501)
T ss_pred             EEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhh
Confidence            3445588887777655556678899999998743   2234443333333221111 235678889999975411  0  


Q ss_pred             --cCHHHHHHHHHHcCC------eEEEEcCCCCCCHHHHHH
Q 031249           81 --VSKEEGEQFAKENGL------LFLEASARTAQNVEEAFI  113 (163)
Q Consensus        81 --v~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~lf~  113 (163)
                        ...+....++...|+      .++++|..+|.++.+...
T Consensus       239 y~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  239 YEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence              011233344444443      399999999999887654

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=94.83  E-value=0.29  Score=39.16  Aligned_cols=110  Identities=11%  Similarity=0.151  Sum_probs=52.4

Q ss_pred             eeeEeeecccchhhhhh---chhhhccCCcEEEEEEECCChHHHHHHHHH-HHHHHHhcCCCCeEEEEeeCCCC--C---
Q 031249            6 ESFFWSLLQAGQESFRS---ITRSYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDL--A---   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~---~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~-~~~l~~~~~~~~p~ilv~nK~D~--~---   76 (163)
                      ++.+||++-.|...|..   +-..-+..-|.||++.+-.    |.....+ .+.+++.   ++|+++|-||+|.  .   
T Consensus        87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~  159 (376)
T PF05049_consen   87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER  159 (376)
T ss_dssp             TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence            68999963333333322   2233456779888877632    4343333 3444443   4899999999995  1   


Q ss_pred             --CCCccCH----HHHHHHH----HHcCC---eEEEEcCCCCC--CHHHHHHHHHHHHHHH
Q 031249           77 --HRRAVSK----EEGEQFA----KENGL---LFLEASARTAQ--NVEEAFIKTAAKILQN  122 (163)
Q Consensus        77 --~~~~v~~----~~~~~~~----~~~~~---~~~~~Sa~~~~--~i~~lf~~l~~~~~~~  122 (163)
                        .++....    +++++-+    +..+.   ++|.+|..+-.  ++..+.++|.+.+...
T Consensus       160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence              1112222    2233222    22343   38999987654  4666777776655444

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PHA02518 ParA-like protein; Provisional

Probab=94.56  E-value=0.38  Score=34.61  Aligned_cols=64  Identities=11%  Similarity=0.032  Sum_probs=37.7

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMS-IMLVGNKCDL   75 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~   75 (163)
                      +..+||||.  ...+....+..+|.+|++...+..  .....+..+++.+.... ...| ..++.|+.+.
T Consensus        79 ~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~n~~~~  145 (211)
T PHA02518         79 YVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT-DGLPKFAFIISRAIK  145 (211)
T ss_pred             EEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC-CCCceEEEEEeccCC
Confidence            344448875  345567788899999999987632  23333444444443322 2344 4566777653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=94.51  E-value=0.38  Score=36.74  Aligned_cols=77  Identities=17%  Similarity=0.003  Sum_probs=46.9

Q ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249           30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  109 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  109 (163)
                      ..|..++|.|++-.  .+++.. ...+.+..   .+--+|.||.|....    .-.+..+....++|+..++  +|++++
T Consensus       190 ~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~  257 (272)
T TIGR00064       190 APDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG--VGEKID  257 (272)
T ss_pred             CCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChH
Confidence            48999999998753  223322 23333322   245788999997432    2334445556789988877  677777


Q ss_pred             HHHHHHHHH
Q 031249          110 EAFIKTAAK  118 (163)
Q Consensus       110 ~lf~~l~~~  118 (163)
                      ++-..-.+.
T Consensus       258 dl~~~~~~~  266 (272)
T TIGR00064       258 DLAPFDADW  266 (272)
T ss_pred             hCccCCHHH
Confidence            664433333

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=94.42  E-value=0.44  Score=37.85  Aligned_cols=67  Identities=12%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      ++.++|  -|  .-.......++.++|.+++|.+.+ ..+.+...+.+..+++.+....+..+++||.+...
T Consensus       219 ~~vV~D--lp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~  285 (366)
T COG4963         219 DFVVVD--LP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK  285 (366)
T ss_pred             CeEEEc--CC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence            455666  45  334445678999999999999976 56788889999999988877788899999999744

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=94.37  E-value=0.29  Score=39.23  Aligned_cols=63  Identities=14%  Similarity=0.050  Sum_probs=34.1

Q ss_pred             Eeeecccchhhhhhc--hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            9 FWSLLQAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~--~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      |..+|.+|+|+|-..  .-+.=+--|-..+++-++-.- .--..+.+......   .+|+++|.||+|+
T Consensus       221 iTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALaL---~VPVfvVVTKIDM  285 (641)
T KOG0463|consen  221 ITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALAL---HVPVFVVVTKIDM  285 (641)
T ss_pred             EEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhhh---cCcEEEEEEeecc
Confidence            334458999998652  222223345566666544321 11112223333333   3899999999997

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=94.35  E-value=0.28  Score=44.91  Aligned_cols=49  Identities=16%  Similarity=0.253  Sum_probs=36.0

Q ss_pred             cCCcEEEEEEECCChH-----HH----HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249           29 RGAAGALLVYDITRRE-----TF----NHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus        29 ~~ad~~i~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +-.+|+|+++|+.+..     ..    ..+...+.++.+......||.|+.||+|+..
T Consensus       200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            3589999999986532     11    2344556667666667899999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.35  E-value=0.19  Score=37.97  Aligned_cols=93  Identities=22%  Similarity=0.392  Sum_probs=62.1

Q ss_pred             cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC---------------------------Cc-
Q 031249           29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---------------------------RA-   80 (163)
Q Consensus        29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~---------------------------~~-   80 (163)
                      .-..+++.|||.+....+.++..|+...--.. .+ -++-++||.|.+..                           .. 
T Consensus        77 ~pl~a~vmvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgi  154 (418)
T KOG4273|consen   77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGI  154 (418)
T ss_pred             cceeeEEEEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccc
Confidence            34678999999999999999999987542221 11 23445888886421                           00 


Q ss_pred             ----------------cCHHHHHHHHHHcCCeEEEEcCCCC------------CCHHHHHHHHHHHHHHHH
Q 031249           81 ----------------VSKEEGEQFAKENGLLFLEASARTA------------QNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        81 ----------------v~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~lf~~l~~~~~~~~  123 (163)
                                      .....+..|+.+.++.+++.++.+.            .||+.+|..|-..+-..+
T Consensus       155 setegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgm  225 (418)
T KOG4273|consen  155 SETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGM  225 (418)
T ss_pred             cccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccc
Confidence                            1122346788889999999988542            478888888876654443

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=94.17  E-value=0.49  Score=39.56  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249           45 TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS--ARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        45 s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~~  120 (163)
                      .+.++...++.+++   .++|++|++||.|...+  ...+.+++++.+.|+++..+.  ++-|+|-.++-+.+++.+.
T Consensus       357 Gl~NL~RHIenvr~---FGvPvVVAINKFd~DTe--~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~  429 (557)
T PRK13505        357 GFANLERHIENIRK---FGVPVVVAINKFVTDTD--AEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE  429 (557)
T ss_pred             HHHHHHHHHHHHHH---cCCCEEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence            34566666777765   45999999999997442  235678889999999876544  5667787777777766554

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=94.07  E-value=0.11  Score=40.63  Aligned_cols=107  Identities=21%  Similarity=0.172  Sum_probs=67.8

Q ss_pred             cceeeEeeecccch---------hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE----EEEe
Q 031249            4 SQESFFWSLLQAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI----MLVG   70 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~---------e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~----ilv~   70 (163)
                      |..+.+.|  |-|-         ..|.+. -.....+|.++.|.|++.+..-......+.-+.+..-++.|.    +=|-
T Consensus       225 g~~vlltD--TvGFisdLP~~LvaAF~AT-LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVd  301 (410)
T KOG0410|consen  225 GNFVLLTD--TVGFISDLPIQLVAAFQAT-LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVD  301 (410)
T ss_pred             CcEEEEee--chhhhhhCcHHHHHHHHHH-HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhc
Confidence            44455555  8882         223322 234568999999999999877666666666666654333343    4456


Q ss_pred             eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ||+|..+. .++.+       .++  .+.+||.+|+|.+++.+.+-..+....
T Consensus       302 nkiD~e~~-~~e~E-------~n~--~v~isaltgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  302 NKIDYEED-EVEEE-------KNL--DVGISALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             cccccccc-cCccc-------cCC--ccccccccCccHHHHHHHHHHHhhhhh
Confidence            77776432 22211       112  577899999999999988877665543

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=93.96  E-value=0.4  Score=36.56  Aligned_cols=64  Identities=28%  Similarity=0.319  Sum_probs=48.8

Q ss_pred             hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249           25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL   98 (163)
Q Consensus        25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~   98 (163)
                      -..+.++|.+|+|...| +..+-++...++.+..-   ++|..+|.||.++.    .+  +++.++.+.+++++
T Consensus       180 i~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f---~ip~~iViNr~~~g----~s--~ie~~~~e~gi~il  243 (284)
T COG1149         180 IASLKGADLAILVTEPT-PFGLHDLKRALELVEHF---GIPTGIVINRYNLG----DS--EIEEYCEEEGIPIL  243 (284)
T ss_pred             HHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh---CCceEEEEecCCCC----ch--HHHHHHHHcCCCee
Confidence            34578999999999887 45667777777777664   49999999999652    22  78889999988743

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=93.78  E-value=0.85  Score=36.38  Aligned_cols=42  Identities=12%  Similarity=0.087  Sum_probs=28.8

Q ss_pred             CCeEEEEeeCCCCC-CCCccCHHHHHHHHHHcCCeEEEEcCCC
Q 031249           63 NMSIMLVGNKCDLA-HRRAVSKEEGEQFAKENGLLFLEASART  104 (163)
Q Consensus        63 ~~p~ilv~nK~D~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  104 (163)
                      .+|+++++|+.|.. ....-..+++..++...+.+++++||.-
T Consensus       199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~  241 (364)
T PRK09601        199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI  241 (364)
T ss_pred             cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            48999999998841 1111224556667767788899999853

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=93.62  E-value=0.42  Score=30.92  Aligned_cols=58  Identities=17%  Similarity=0.078  Sum_probs=38.7

Q ss_pred             ecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC-CCeEEEEeeC
Q 031249           12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNK   72 (163)
Q Consensus        12 ~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ilv~nK   72 (163)
                      +||++...  ......+..+|.+|++.+.+ ..++..+..+++.+.+...+ ...+.+|+|+
T Consensus        48 iDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          48 VDLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             EeCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            34776432  23345778899999999755 56777777777777665433 4567777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK14974 cell division protein FtsY; Provisional

Probab=93.28  E-value=0.77  Score=36.22  Aligned_cols=102  Identities=10%  Similarity=-0.013  Sum_probs=57.8

Q ss_pred             Eeeecccchhhhhh-c---hhhh--ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            9 FWSLLQAGQESFRS-I---TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         9 l~d~Dt~G~e~~~~-~---~~~~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+||+|.-.... +   +...  .-..|.++||.|++...   +.......+.+..   .+--+|.||.|....    
T Consensus       225 vVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~---~~~giIlTKlD~~~~----  294 (336)
T PRK14974        225 VVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV---GIDGVILTKVDADAK----  294 (336)
T ss_pred             EEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC---CCCEEEEeeecCCCC----
Confidence            34445999643221 1   1112  22578899999987643   2222233333322   235778999997432    


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      .=-+..++...+.|+..++  +|++++++...-...+.++
T Consensus       295 ~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~~  332 (336)
T PRK14974        295 GGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVDK  332 (336)
T ss_pred             ccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHHH
Confidence            1233345556788988887  6888887765544444443

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=93.05  E-value=1.5  Score=30.46  Aligned_cols=83  Identities=11%  Similarity=-0.048  Sum_probs=49.5

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG   86 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~   86 (163)
                      +.|+|  |+|....  .....+..+|.+|++.+.+. .++..+..+++.+.+..  .....++.|+.+...  ....+..
T Consensus        65 ~viiD--~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~--~~~~~~~  135 (179)
T cd02036          65 YILID--SPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM--VEGGDMV  135 (179)
T ss_pred             EEEEE--CCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc--cchhhHH
Confidence            44555  7764322  23455688999999998764 45666666666665532  235678899998532  1222223


Q ss_pred             HHHHHHcCCeEE
Q 031249           87 EQFAKENGLLFL   98 (163)
Q Consensus        87 ~~~~~~~~~~~~   98 (163)
                      ..+.+.++.+++
T Consensus       136 ~~~~~~~~~~v~  147 (179)
T cd02036         136 EDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHhCCCEE
Confidence            445556676643

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=92.75  E-value=2.4  Score=35.84  Aligned_cols=76  Identities=18%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249           18 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL   96 (163)
Q Consensus        18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~   96 (163)
                      +....|...|+.+-++||+|+-=..-   .+-.... ..+.+..+.+...|+|+||.|+.+.....+..+.+++...-+|
T Consensus       436 d~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP  512 (980)
T KOG0447|consen  436 ETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP  512 (980)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence            44555788999999999999832111   1111112 2233444467889999999999776667788888877654333

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=92.04  E-value=1.1  Score=38.65  Aligned_cols=72  Identities=10%  Similarity=0.055  Sum_probs=40.4

Q ss_pred             cceeeEeeecccchhhhh-------h---chhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CeEEEE
Q 031249            4 SQESFFWSLLQAGQESFR-------S---ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPN--MSIMLV   69 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~-------~---~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ilv   69 (163)
                      +..+.|+|  |||.....       .   .+..+++  ..|++|||..++.......-..+++.+.+.....  .-+|||
T Consensus       165 G~~L~VID--TPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVV  242 (763)
T TIGR00993       165 GVKIRVID--TPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVT  242 (763)
T ss_pred             CceEEEEE--CCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEE
Confidence            44455555  99964321       1   1222444  5899999998764322212224555554443321  467899


Q ss_pred             eeCCCCCC
Q 031249           70 GNKCDLAH   77 (163)
Q Consensus        70 ~nK~D~~~   77 (163)
                      .|..|...
T Consensus       243 FThgD~lp  250 (763)
T TIGR00993       243 LTHAASAP  250 (763)
T ss_pred             EeCCccCC
Confidence            99999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=92.02  E-value=1.5  Score=34.24  Aligned_cols=81  Identities=17%  Similarity=0.083  Sum_probs=48.8

Q ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249           30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  109 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  109 (163)
                      ..+..++|.|++..  .+.+.+. ..+.+..   .+.-+|.||.|....    .=.+..++...++|+..++  +|++++
T Consensus       232 ~p~~~~LVl~a~~g--~~~~~~a-~~f~~~~---~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~  299 (318)
T PRK10416        232 APHEVLLVLDATTG--QNALSQA-KAFHEAV---GLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGID  299 (318)
T ss_pred             CCceEEEEEECCCC--hHHHHHH-HHHHhhC---CCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChh
Confidence            56788999998854  2333322 2222222   345788999996332    2234456677799988888  677787


Q ss_pred             HHHHHHHHHHHHH
Q 031249          110 EAFIKTAAKILQN  122 (163)
Q Consensus       110 ~lf~~l~~~~~~~  122 (163)
                      ++-..-.+.+.+.
T Consensus       300 Dl~~~~~~~~~~~  312 (318)
T PRK10416        300 DLQPFDAEEFVDA  312 (318)
T ss_pred             hCccCCHHHHHHH
Confidence            7654444444333

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=91.92  E-value=1.9  Score=31.86  Aligned_cols=65  Identities=15%  Similarity=0.099  Sum_probs=41.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      .+.|.|  ||+.  ...+....+..+|.+|++...+ ..++..+...+..+.+......++-+|.|+.|.
T Consensus       116 D~viiD--~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~  180 (246)
T TIGR03371       116 DWVLID--VPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDP  180 (246)
T ss_pred             CEEEEE--CCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence            355555  7873  3345567788999999999875 455666653333333322234567789999985

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd03112 CobW_like The function of this protein family is unkown

Probab=91.75  E-value=0.46  Score=33.08  Aligned_cols=64  Identities=11%  Similarity=-0.001  Sum_probs=37.3

Q ss_pred             eeeEeeecccchhhhhhchhh--------hccCCcEEEEEEECCChHHHH-HHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRS--------YYRGAAGALLVYDITRRETFN-HLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~--------~~~~ad~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +.+...+||+|...-..+...        ..-..|++++++|+....... ....+..++....      ++|.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence            455566779996433232221        233689999999976543322 2223445554432      678999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=91.69  E-value=0.029  Score=45.20  Aligned_cols=67  Identities=19%  Similarity=0.232  Sum_probs=49.0

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      |-++.++|  |||+-.|+--.+.+++--||++.|||.+..-.-+.+--|..    ....++|-..++||+|..
T Consensus       101 g~rinlid--tpghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~  167 (753)
T KOG0464|consen  101 GHRINLID--TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKL  167 (753)
T ss_pred             cceEeeec--CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhh
Confidence            45666766  99999999999999999999999999876432222222322    222458888999999963

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=91.21  E-value=1.1  Score=34.47  Aligned_cols=67  Identities=12%  Similarity=0.138  Sum_probs=34.2

Q ss_pred             CCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEEEc
Q 031249           30 GAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLEAS  101 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~~S  101 (163)
                      ..|++||+++.+... +-.++ ..++.+..    .+++|-|+.|.|.....++.  ...+..-+...++.+|...
T Consensus       113 RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~----~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  113 RVHACLYFIPPTGHGLKPLDI-EFMKRLSK----RVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             -EEEEEEEE-TTSSSS-HHHH-HHHHHHTT----TSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S----
T ss_pred             CcceEEEEEcCCCccchHHHH-HHHHHhcc----cccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccc
Confidence            589999999986521 11222 34444433    47899999999975533221  1223444566777755543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=90.44  E-value=1.9  Score=32.64  Aligned_cols=108  Identities=11%  Similarity=0.099  Sum_probs=59.0

Q ss_pred             ccceeeEeeecccc------------------hhhhhhc--------hhhhcc--CCcEEEEEEECCChHHHHHHH-HHH
Q 031249            3 FSQESFFWSLLQAG------------------QESFRSI--------TRSYYR--GAAGALLVYDITRRETFNHLS-SWL   53 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G------------------~e~~~~~--------~~~~~~--~ad~~i~v~d~~~~~s~~~~~-~~~   53 (163)
                      +|++++|-.+||||                  .|+|...        +...+.  ..|+++|.+..+- .++..+. +++
T Consensus       100 ~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDiefl  178 (336)
T KOG1547|consen  100 KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFL  178 (336)
T ss_pred             cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHH
Confidence            46788888899999                  1233222        122233  4788888887664 3344432 345


Q ss_pred             HHHHHhcCCCCeEEEEeeCCCCCC--CCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 031249           54 EDARQHANPNMSIMLVGNKCDLAH--RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  115 (163)
Q Consensus        54 ~~l~~~~~~~~p~ilv~nK~D~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l  115 (163)
                      +.+.+.    +-++-|+-|.|...  ++..-.+.++.-...+++.+++-...+.+.=+..++.-
T Consensus       179 krLt~v----vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~k  238 (336)
T KOG1547|consen  179 KRLTEV----VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDK  238 (336)
T ss_pred             HHHhhh----heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHH
Confidence            555443    45777888999632  11111233444455667777766555444333334433

>TIGR00959 ffh signal recognition particle protein

Probab=90.07  E-value=2.5  Score=34.51  Aligned_cols=84  Identities=13%  Similarity=-0.016  Sum_probs=47.2

Q ss_pred             Eeeecccchhhhhh-chh---h--hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            9 FWSLLQAGQESFRS-ITR---S--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         9 l~d~Dt~G~e~~~~-~~~---~--~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+||||.-.... +..   .  ..-..|.++||.|++..   +++..+...+....   ...=+|.||.|....    
T Consensus       185 vVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~~----  254 (428)
T TIGR00959       185 VVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDAR----  254 (428)
T ss_pred             EEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCccc----
Confidence            44445999533321 111   1  12357889999998754   34444445554333   133566999995321    


Q ss_pred             HHHHHHHHHHcCCeEEEEcC
Q 031249           83 KEEGEQFAKENGLLFLEASA  102 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa  102 (163)
                      .-.+..++...++|+..+..
T Consensus       255 ~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ccHHHHHHHHHCcCEEEEeC
Confidence            12256677778888666554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=89.91  E-value=5.5  Score=28.88  Aligned_cols=86  Identities=13%  Similarity=-0.036  Sum_probs=48.5

Q ss_pred             eEeeecccchhhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCC-eEEEEeeCCCCCCCCccCHH
Q 031249            8 FFWSLLQAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNM-SIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~-p~ilv~nK~D~~~~~~v~~~   84 (163)
                      -+..+||+|.--...+. ....+.||.+|++...+ ..++..+...++.+..... .+. ...++.|+.+..    ...+
T Consensus       118 D~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~  192 (212)
T cd02117         118 DVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETE  192 (212)
T ss_pred             CEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHH
Confidence            34444576644222221 11134799999999864 5556555555555544332 133 345889999852    2344


Q ss_pred             HHHHHHHHcCCeEE
Q 031249           85 EGEQFAKENGLLFL   98 (163)
Q Consensus        85 ~~~~~~~~~~~~~~   98 (163)
                      ...++.+.++.+++
T Consensus       193 ~~~~~~~~~~~~vl  206 (212)
T cd02117         193 LIDAFAERLGTQVI  206 (212)
T ss_pred             HHHHHHHHcCCCEE
Confidence            56677777776644

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=89.90  E-value=0.00032  Score=46.19  Aligned_cols=41  Identities=44%  Similarity=0.674  Sum_probs=24.0

Q ss_pred             EEEEECCChHHHHHHHH-HHHHHHHhcCC-CCeEEEEeeCCCC
Q 031249           35 LLVYDITRRETFNHLSS-WLEDARQHANP-NMSIMLVGNKCDL   75 (163)
Q Consensus        35 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~-~~p~ilv~nK~D~   75 (163)
                      +++||.++.++++.+.. |.....+.... ..|.++++||.|+
T Consensus        36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl   78 (124)
T smart00010       36 IDVYDPTSYESFDVVLQCWRVDDRDSADNKNVPEVLVGNKSDL   78 (124)
T ss_pred             hhhccccccCCCCEEEEEEEccCHHHHHHHhHHHHHhcCCCCC
Confidence            78888888887776644 43333222111 2455666777775

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=89.84  E-value=1.5  Score=34.26  Aligned_cols=99  Identities=15%  Similarity=0.060  Sum_probs=55.0

Q ss_pred             cchhhh-hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249           15 AGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN   93 (163)
Q Consensus        15 ~G~e~~-~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~   93 (163)
                      +|+..- -..+...++..|.||=|=|+--+-|-+.  ..+..+   . +.+|-|+|.||+||-+..+ ...-++.+..+.
T Consensus        30 pgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~---~-~~k~riiVlNK~DLad~~~-~k~~iq~~~~~~  102 (335)
T KOG2485|consen   30 PGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDF---L-PPKPRIIVLNKMDLADPKE-QKKIIQYLEWQN  102 (335)
T ss_pred             chHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHh---c-CCCceEEEEecccccCchh-hhHHHHHHHhhc
Confidence            665432 2245667889999999999876554332  111122   2 3589999999999965322 233344444443


Q ss_pred             CCeEEEEcCCCCCC--HHHHHHHHHHHHH
Q 031249           94 GLLFLEASARTAQN--VEEAFIKTAAKIL  120 (163)
Q Consensus        94 ~~~~~~~Sa~~~~~--i~~lf~~l~~~~~  120 (163)
                      ...++..++....+  +..++..+.....
T Consensus       103 ~~~~~~~~c~~~~~~~v~~l~~il~~~~~  131 (335)
T KOG2485|consen  103 LESYIKLDCNKDCNKQVSPLLKILTILSE  131 (335)
T ss_pred             ccchhhhhhhhhhhhccccHHHHHHHHHH
Confidence            44444444444333  5555544433333

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=89.80  E-value=2  Score=35.14  Aligned_cols=84  Identities=13%  Similarity=0.027  Sum_probs=46.1

Q ss_pred             Eeeecccchhhhhh-ch---hh--hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            9 FWSLLQAGQESFRS-IT---RS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         9 l~d~Dt~G~e~~~~-~~---~~--~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+||||...... +.   ..  ....+|.+++|+|++...   +.....+.+.+..   ..--+|.||.|....    
T Consensus       178 vVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~----  247 (437)
T PRK00771        178 VIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAK----  247 (437)
T ss_pred             EEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCc----
Confidence            44455999654332 11   11  133678999999987642   2223333333322   123567899996331    


Q ss_pred             HHHHHHHHHHcCCeEEEEcC
Q 031249           83 KEEGEQFAKENGLLFLEASA  102 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa  102 (163)
                      .=-+..+....+.|+.+++.
T Consensus       248 ~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ccHHHHHHHHHCcCEEEEec
Confidence            12344566677888666654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.51  E-value=3.4  Score=37.98  Aligned_cols=50  Identities=22%  Similarity=0.307  Sum_probs=35.1

Q ss_pred             ccCCcEEEEEEECCChH----HH-----HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249           28 YRGAAGALLVYDITRRE----TF-----NHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus        28 ~~~ad~~i~v~d~~~~~----s~-----~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      .+-.+|||+..|+.+.-    ..     ..+..-+.++.+......|++|++||.|+..
T Consensus       212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            35689999999986521    11     1233345666666666799999999999854

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=89.08  E-value=5.1  Score=27.93  Aligned_cols=59  Identities=14%  Similarity=0.017  Sum_probs=34.3

Q ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249           30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL   98 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~   98 (163)
                      ..+++++|++......   ...+...+.+..  + ..-+|.||.|....    .-.+..++...++|+.
T Consensus       112 ~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~----~g~~~~~~~~~~~p~~  170 (173)
T cd03115         112 KPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR----GGAALSIRAVTGKPIK  170 (173)
T ss_pred             CCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC----cchhhhhHHHHCcCeE
Confidence            4899999999865432   223344443332  2 35677799997442    2333346666677644

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=88.40  E-value=4.5  Score=32.27  Aligned_cols=65  Identities=12%  Similarity=0.135  Sum_probs=40.6

Q ss_pred             CCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEE
Q 031249           30 GAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLE   99 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~   99 (163)
                      ..|+++|....+.. .+..+. ..++.+.+    .+-+|-|+.|.|.....++.  .+.+.+....+++++|.
T Consensus       133 RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         133 RVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             ceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            47999999986642 222221 23444433    35788889999986644432  23456667788888774

>PRK10867 signal recognition particle protein; Provisional

Probab=88.16  E-value=5.9  Score=32.45  Aligned_cols=63  Identities=13%  Similarity=-0.030  Sum_probs=36.9

Q ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249           30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  102 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  102 (163)
                      ..+.++||.|....   +++....+.+.+..   ...-+|.||.|.....    -.+..+....++|+.+++.
T Consensus       213 ~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rg----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        213 NPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARG----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             CCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc----cHHHHHHHHHCcCEEEEeC
Confidence            56788999998653   23333444444322   1235667999953321    2255666777888666654

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=87.42  E-value=2  Score=30.31  Aligned_cols=66  Identities=12%  Similarity=-0.002  Sum_probs=44.9

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      -+..+||++.....  ....+..+|.+|++.+.+. .+...+..+++.+......-..+.+|.|+.+..
T Consensus        96 D~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~  161 (195)
T PF01656_consen   96 DYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPG  161 (195)
T ss_dssp             SEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred             cceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence            34444577643322  5667889999999999774 557777777777766542223568889999864

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=87.06  E-value=5  Score=32.91  Aligned_cols=80  Identities=11%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             EEEEEEECC--C--hHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC--CCC
Q 031249           33 GALLVYDIT--R--RETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA--RTA  105 (163)
Q Consensus        33 ~~i~v~d~~--~--~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa--~~~  105 (163)
                      |+++..|.+  +  ++++..+. ..+++|++..   +|+++++|-.+=..  .-+.+.+.++...++.+++.+++  .+.
T Consensus       148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~ig---KPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~  222 (492)
T PF09547_consen  148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIG---KPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLRE  222 (492)
T ss_pred             eEEEecCCCccCCChHHHHHHHHHHHHHHHHhC---CCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCH
Confidence            444444543  2  45665554 4778887764   89999999876322  23455667778888988888776  344


Q ss_pred             CCHHHHHHHHHH
Q 031249          106 QNVEEAFIKTAA  117 (163)
Q Consensus       106 ~~i~~lf~~l~~  117 (163)
                      .+|..+++.++-
T Consensus       223 ~DI~~Il~~vLy  234 (492)
T PF09547_consen  223 EDITRILEEVLY  234 (492)
T ss_pred             HHHHHHHHHHHh
Confidence            556666655543

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=86.49  E-value=6.7  Score=29.04  Aligned_cols=62  Identities=13%  Similarity=-0.030  Sum_probs=40.6

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +.|+|  +|+.-.  ......+..+|.+|++...+ ..++..+...++.+....  ..++.++.|+.+.
T Consensus       114 ~viiD--~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~  175 (261)
T TIGR01968       114 YVIID--CPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP  175 (261)
T ss_pred             EEEEe--CCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence            44444  776432  22345567899999999865 566777777777665543  2367788899874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=86.48  E-value=3.3  Score=32.57  Aligned_cols=65  Identities=18%  Similarity=0.061  Sum_probs=39.3

Q ss_pred             CCcEEEEEEECCChHHHHH-HHH-HHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcC--CeEEEEcC
Q 031249           30 GAAGALLVYDITRRETFNH-LSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASA  102 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~-~~~-~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa  102 (163)
                      .-|+++-|+|+........ +.. ...++.-.      =+|++||.|+.+...  .+..+...+..+  .+++.++.
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            4688999999876544322 222 33344332      288999999976442  344455555544  45777776

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=86.21  E-value=0.28  Score=37.61  Aligned_cols=103  Identities=14%  Similarity=0.157  Sum_probs=55.2

Q ss_pred             eEeeecccc----------hhhhhhchhhhccCCc---EEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEeeCC
Q 031249            8 FFWSLLQAG----------QESFRSITRSYYRGAA---GALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         8 ~l~d~Dt~G----------~e~~~~~~~~~~~~ad---~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      .++.+|.||          .+.+..+...|+.+-+   -++++.|++.+  +...+. .++-+-+   .++|+.+|.||+
T Consensus       184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~  258 (320)
T KOG2486|consen  184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKC  258 (320)
T ss_pred             eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehh
Confidence            344455788          3556667777776443   34444555432  222222 1222222   359999999999


Q ss_pred             CCCCCCc----cCHHHHHH----HHH---HcCCeEEEEcCCCCCCHHHHHHHH
Q 031249           74 DLAHRRA----VSKEEGEQ----FAK---ENGLLFLEASARTAQNVEEAFIKT  115 (163)
Q Consensus        74 D~~~~~~----v~~~~~~~----~~~---~~~~~~~~~Sa~~~~~i~~lf~~l  115 (163)
                      |......    -+...+..    +..   .-..+++.+|+.++.|++.++--+
T Consensus       259 DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i  311 (320)
T KOG2486|consen  259 DKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHI  311 (320)
T ss_pred             hhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeeh
Confidence            9643211    01111111    111   112456779999999998876544

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=86.08  E-value=9.2  Score=26.54  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             eeEeeecccchhhhhhchhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-----C
Q 031249            7 SFFWSLLQAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-----R   79 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-----~   79 (163)
                      +-+..+|||+.-.  .......  ..+|.+|+|.... ..+...+..+++.+.+..  ....-+|.|+.+-..+     .
T Consensus        68 yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~~~  142 (169)
T cd02037          68 LDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGKKI  142 (169)
T ss_pred             CCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCCcc
Confidence            3344555887421  1112222  5789999999766 567777888888887754  1234577998874211     1


Q ss_pred             cc-CHHHHHHHHHHcCCeE
Q 031249           80 AV-SKEEGEQFAKENGLLF   97 (163)
Q Consensus        80 ~v-~~~~~~~~~~~~~~~~   97 (163)
                      +. .....+.+++.++.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~  161 (169)
T cd02037         143 YIFGKGGGEKLAEELGVPL  161 (169)
T ss_pred             cccCCccHHHHHHHcCCCE
Confidence            11 1234566777766653

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=85.63  E-value=12  Score=28.69  Aligned_cols=93  Identities=16%  Similarity=0.028  Sum_probs=52.7

Q ss_pred             CccceeeEeeecccchhhhhh-------chhhhccCCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeC-
Q 031249            2 FFSQESFFWSLLQAGQESFRS-------ITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNK-   72 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~-------~~~~~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK-   72 (163)
                      |+|.++|+.|  .||.-.-.+       ..-...+.||.++.|.|++..+.-+. +...++.+--+.+..+|-|.+--| 
T Consensus       106 y~ga~IQllD--LPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk  183 (364)
T KOG1486|consen  106 YNGANIQLLD--LPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKK  183 (364)
T ss_pred             ecCceEEEec--CcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeec
Confidence            5788899988  587432221       23446789999999999998765543 344555553233333444444222 


Q ss_pred             CCCC------CCCccCHHHHHHHHHHcCCe
Q 031249           73 CDLA------HRRAVSKEEGEQFAKENGLL   96 (163)
Q Consensus        73 ~D~~------~~~~v~~~~~~~~~~~~~~~   96 (163)
                      ..-.      .-...++..+..+++++.+.
T Consensus       184 ~gGi~f~~T~~lT~~~ek~i~~ILheykI~  213 (364)
T KOG1486|consen  184 TGGISFNTTVPLTHCDEKLIYTILHEYKIH  213 (364)
T ss_pred             cCCeEEeeeeccccccHHHHHHHHHHHeec
Confidence            2110      01224456666677777654

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.03  E-value=3.3  Score=33.48  Aligned_cols=47  Identities=9%  Similarity=0.044  Sum_probs=29.7

Q ss_pred             ccceeeEeeecccchhh-----hhhchhh-hccCCcEEEEEEECCChHHHHHH
Q 031249            3 FSQESFFWSLLQAGQES-----FRSITRS-YYRGAAGALLVYDITRRETFNHL   49 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~-----~~~~~~~-~~~~ad~~i~v~d~~~~~s~~~~   49 (163)
                      ..+++-++.+||+|..+     |..|... -.-.-|-+|||.|++-.+.-++.
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q  232 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ  232 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence            34577788888999533     3333222 12357999999999876654443

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.84  E-value=6.8  Score=31.30  Aligned_cols=70  Identities=13%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             CCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEEEcCCC
Q 031249           30 GAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLEASART  104 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~  104 (163)
                      ..|+++|.+..+-. .+..+. ..++.+.    ..+.+|-|+-|.|.....++.  ...+.+-+...++++|......
T Consensus       129 RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  129 RVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             ceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence            68999999987642 122221 2233332    347788899999986644432  2345566777788866655543

>cd03114 ArgK-like The function of this protein family is unkown

Probab=84.33  E-value=2.9  Score=28.79  Aligned_cols=57  Identities=12%  Similarity=0.005  Sum_probs=33.3

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +-+..+||+|.....   ..++..||-+|++....-.+.+.-+   ...+.+.     -=+++.||+|
T Consensus        92 ~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~~-----~~~~~~~k~~  148 (148)
T cd03114          92 FDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI---KAGIMEI-----ADIVVVNKAD  148 (148)
T ss_pred             CCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh---hhhHhhh-----cCEEEEeCCC
Confidence            344555599955322   4588999999999987632222211   1122221     2378899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=84.20  E-value=7.3  Score=32.89  Aligned_cols=69  Identities=7%  Similarity=0.008  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249           47 NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS--ARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        47 ~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~~  120 (163)
                      ..+..+++.+++   .++|+||.+|+.....+  ...+.+.+++.+.++.+..+.  ++-|+|-.++.+.+++.+.
T Consensus       388 ~NL~~Hi~n~~~---fg~pvVVaiN~F~~Dt~--~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e  458 (587)
T PRK13507        388 ANLLHHIGTVKK---SGINPVVCINAFYTDTH--AEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN  458 (587)
T ss_pred             HHHHHHHHHHHH---cCCCeEEEeCCCCCCCH--HHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence            334445555554   46999999999875333  234667788888888755443  5667788888777776553

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.97  E-value=6.9  Score=24.71  Aligned_cols=19  Identities=16%  Similarity=0.127  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHcCCeEEEEc
Q 031249           83 KEEGEQFAKENGLLFLEAS  101 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~S  101 (163)
                      ...+...++..++|++.+.
T Consensus        64 ~~~vk~~akk~~ip~~~~~   82 (97)
T PF10087_consen   64 MWKVKKAAKKYGIPIIYSR   82 (97)
T ss_pred             HHHHHHHHHHcCCcEEEEC
Confidence            4666677777777766654

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=83.95  E-value=7.1  Score=32.60  Aligned_cols=69  Identities=13%  Similarity=0.118  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249           47 NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS--ARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        47 ~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~~  120 (163)
                      ..+...++.+++   .+.|+||.+|+.....+  -..+.+++++.+.|..+..+.  ++-|.|-.++.+.+++.+.
T Consensus       343 ~NL~~Hi~n~~~---fg~p~VVaiN~F~~Dt~--~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e  413 (524)
T cd00477         343 ANLRKHIENIKK---FGVPVVVAINKFSTDTD--AELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE  413 (524)
T ss_pred             HHHHHHHHHHHH---cCCCeEEEecCCCCCCH--HHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence            444555555554   46999999999875333  234667788899998866553  5667888888877776553

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=83.86  E-value=8.6  Score=28.57  Aligned_cols=65  Identities=9%  Similarity=-0.016  Sum_probs=41.0

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHH---HhcCCCCeEEEEeeCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR---QHANPNMSIMLVGNKCD   74 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~---~~~~~~~p~ilv~nK~D   74 (163)
                      +-+..+||||...  .+....+..+|.+|+.+..+ ..++..+..++..+.   +..+++.|..++.|.++
T Consensus        84 yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         84 FDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             CCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            3444555898543  44566778899999888765 344544444443332   22345678889999986

>CHL00175 minD septum-site determining protein; Validated

Probab=83.81  E-value=9.9  Score=28.80  Aligned_cols=62  Identities=8%  Similarity=-0.082  Sum_probs=39.4

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +..+|||+.-  .......+..+|.+|+|.+.+ ..++..+..+++.+.+...  ..+.+|.|+.+.
T Consensus       129 ~VIiDtpp~~--~~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~~--~~~~lvvN~~~~  190 (281)
T CHL00175        129 YILIDCPAGI--DVGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANGI--YNVKLLVNRVRP  190 (281)
T ss_pred             EEEEeCCCCC--CHHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcCC--CceEEEEeccCh
Confidence            3444477643  223344557799999998755 5667777777777665331  345678899874

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=83.70  E-value=13  Score=26.32  Aligned_cols=85  Identities=16%  Similarity=0.269  Sum_probs=58.0

Q ss_pred             ccCCcEEEEEEECCCh-------HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEE
Q 031249           28 YRGAAGALLVYDITRR-------ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA  100 (163)
Q Consensus        28 ~~~ad~~i~v~d~~~~-------~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~  100 (163)
                      ++....=.+++|.++-       +-...+..|++++++... ...++||-|-.-...  .....++..+.+..+++++.-
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h  112 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFG-KDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH  112 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCC-CCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence            5555666677777651       123567788999987642 225888888764322  345788899999999998888


Q ss_pred             cCCCCCCHHHHHHHH
Q 031249          101 SARTAQNVEEAFIKT  115 (163)
Q Consensus       101 Sa~~~~~i~~lf~~l  115 (163)
                      .++...+..++...+
T Consensus       113 ~~kKP~~~~~i~~~~  127 (168)
T PF09419_consen  113 RAKKPGCFREILKYF  127 (168)
T ss_pred             CCCCCccHHHHHHHH
Confidence            888886666665554

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PRK10818 cell division inhibitor MinD; Provisional

Probab=83.04  E-value=8  Score=29.07  Aligned_cols=64  Identities=9%  Similarity=-0.072  Sum_probs=38.9

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc----C--CCCeEEEEeeCCCC
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA----N--PNMSIMLVGNKCDL   75 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~--~~~p~ilv~nK~D~   75 (163)
                      +..+|+|+.-..  .....+..+|.+|++.+.+ ..++..+..+++.+....    +  .+.+..++.|+.+.
T Consensus       116 ~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~  185 (270)
T PRK10818        116 FIVCDSPAGIET--GALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (270)
T ss_pred             EEEEeCCCCccH--HHHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence            344447654432  2344568899999999876 456666666666654321    1  12345778898874

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=82.94  E-value=7.6  Score=24.44  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=26.4

Q ss_pred             ecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHH
Q 031249           12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE   54 (163)
Q Consensus        12 ~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~   54 (163)
                      +|+++...  ......+..+|.+|++.+.+ ..++..+..+++
T Consensus        45 iD~p~~~~--~~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          45 IDTPPSLG--LLTRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             EeCcCCCC--HHHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            34776432  22346778899999999865 556766666665

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=82.51  E-value=15  Score=27.66  Aligned_cols=65  Identities=15%  Similarity=0.069  Sum_probs=35.5

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeE-EEEeeCCCC
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSI-MLVGNKCDL   75 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~-ilv~nK~D~   75 (163)
                      +..+||+|...... ....+..||.+|++...+ ..++..+...++.+... ...+.++ .+|.|+.+.
T Consensus       118 ~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~  184 (267)
T cd02032         118 VILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK  184 (267)
T ss_pred             EEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence            44445876432211 223477899999998764 34444444444444322 1234543 467899874

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=82.16  E-value=9.4  Score=31.26  Aligned_cols=85  Identities=6%  Similarity=-0.090  Sum_probs=45.5

Q ss_pred             eeEeeecccchhhhhh-c----hhh-hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            7 SFFWSLLQAGQESFRS-I----TRS-YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~-~----~~~-~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      +.+..+||||...... +    ... ...+.|-++||.|++-.+.-   ....+.+.+..   .+--+|.||.|..... 
T Consensus       183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~---~~~g~IlTKlD~~arg-  255 (429)
T TIGR01425       183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV---DVGSVIITKLDGHAKG-  255 (429)
T ss_pred             CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc---CCcEEEEECccCCCCc-
Confidence            3445555999543322 1    111 12356889999998754322   22334444332   3567889999974321 


Q ss_pred             cCHHHHHHHHHHcCCeEEEEc
Q 031249           81 VSKEEGEQFAKENGLLFLEAS  101 (163)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~S  101 (163)
                         =-+..+....+.|+..++
T Consensus       256 ---G~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       256 ---GGALSAVAATKSPIIFIG  273 (429)
T ss_pred             ---cHHhhhHHHHCCCeEEEc
Confidence               112334555676655554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=82.13  E-value=19  Score=27.03  Aligned_cols=80  Identities=14%  Similarity=0.061  Sum_probs=44.4

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCCCCCCCccCHHHH
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSI-MLVGNKCDLAHRRAVSKEEG   86 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~-ilv~nK~D~~~~~~v~~~~~   86 (163)
                      +..+||+|.-.... ....+..||.+|++... +..++..+...++.+.+.. ..+.++ -++.|+.+.       ....
T Consensus       120 ~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~  190 (270)
T PRK13185        120 VILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLI  190 (270)
T ss_pred             EEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHH
Confidence            33444766432221 22346779999999965 4555666555555544321 245664 478899763       2334


Q ss_pred             HHHHHHcCCeE
Q 031249           87 EQFAKENGLLF   97 (163)
Q Consensus        87 ~~~~~~~~~~~   97 (163)
                      ..+.+.++.++
T Consensus       191 ~~~~~~~g~~v  201 (270)
T PRK13185        191 DKFNEAVGLKV  201 (270)
T ss_pred             HHHHHHcCCCE
Confidence            55666666543

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=81.71  E-value=7.4  Score=29.08  Aligned_cols=102  Identities=9%  Similarity=0.049  Sum_probs=59.0

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH--HHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL--SSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      +.+..+||.|....  +....+..+|.+|+=.-.+..+.-+.+  ..|+.++.+.....+|.-|+.|+..-.. ......
T Consensus        84 ~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~  160 (231)
T PF07015_consen   84 FDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR  160 (231)
T ss_pred             CCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence            33444458874321  234566789999988876644433332  3355666554556799999999987321 111112


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~  113 (163)
                      .+..+..  +++++.+......-..++|.
T Consensus       161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  161 IISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHh--cCCccccccccHHHHHHHHH
Confidence            2233333  58888877766555666665

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=80.24  E-value=21  Score=26.80  Aligned_cols=67  Identities=15%  Similarity=0.084  Sum_probs=37.2

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSI-MLVGNKCDL   75 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~-ilv~nK~D~   75 (163)
                      +-+..+||+|.-....+ ...+..||.+|++... +..++..+...++.+.+.. ..+.++ .+|.|+.+.
T Consensus       116 yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~  184 (268)
T TIGR01281       116 YDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA  184 (268)
T ss_pred             CCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence            33444557764321111 2346789999998765 4455655555555544322 234543 577899874

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		6e-46
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-45
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		7e-41
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-40
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		5e-36
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-35
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-32
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-31
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-28
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		7e-28
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-27
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-27
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-27
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-27
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		7e-27
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-27
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		8e-27
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		8e-27
4fmc_B	171	Espg-Rab1 Complex Length = 171		8e-27
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		8e-27
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		9e-27
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-26
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-26
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-26
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		6e-26
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-26
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		6e-26
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		7e-26
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-26
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		9e-26
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-25
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-25
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-25
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-25
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-25
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-25
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-25
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-25
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-25
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-25
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-25
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		5e-25
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		6e-25
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		7e-25
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		8e-25
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-24
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-24
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-24
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-24
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-24
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-24
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-24
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-24
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-24
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-24
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		6e-24
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-24
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		7e-24
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		7e-24
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		9e-24
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-23
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-23
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-23
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-22
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-22
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-22
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-22
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-22
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-22
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		7e-22
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-21
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-21
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		7e-21
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		7e-21
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-20
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-20
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-18
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		7e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-16
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-16
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-16
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-16
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		9e-16
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-15
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-15
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-15
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-15
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		6e-15
1vg1_A	185	Gdp-bound Rab7 Length = 185		7e-15
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		7e-15
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-14
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-14
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-14
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-14
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-14
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-14
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		5e-14
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-13
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-13
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-13
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		4e-13
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-12
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-12
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-12
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-12
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-12
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-12
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		4e-12
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-12
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		6e-12
4q21_A	189	Molecular Switch For Signal Transduction: Structura		7e-12
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-12
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		7e-12
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		7e-12
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-12
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		8e-12
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		9e-12
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		9e-12
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		9e-12
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-11
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-11
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-11
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-11
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-11
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-11
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-11
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-11
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-11
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-11
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-11
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-11
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-11
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		3e-11
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-11
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-11
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-11
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		3e-11
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-11
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-11
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-11
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		7e-11
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		9e-11
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		9e-11
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-10
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-10
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-10
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-10
1byu_A	216	Canine Gdp-Ran Length = 216		1e-10
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-10
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-10
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-10
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-10
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-10
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-10
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-10
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-10
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-10
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-10
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-10
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-10
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-10
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-10
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-10
3icq_B	171	Karyopherin Nuclear State Length = 171		5e-10
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-10
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		8e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-10
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		9e-10
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-09
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-09
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-09
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-08
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-08
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		4e-08
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-07
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-07
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-07
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-07
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		3e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		8e-07
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		9e-07
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-06
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-06
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-06
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-06
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-06
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-06
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-06
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-06
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-06
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-06
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-06
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-06
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-06
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-06
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-06
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-06
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		4e-06
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		4e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		4e-06
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-05
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-05
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-05
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-05
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-05
1mh1_A	186	Small G-Protein Length = 186		2e-05
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-05
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-05
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-05
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-05
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-05
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		6e-05
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		7e-05
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-05
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		7e-05
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		7e-05
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		7e-05
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		7e-05
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		7e-05
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		8e-05
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		8e-05
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		8e-05
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		8e-05
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		9e-05
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-05
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-05
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-04
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		4e-04
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		4e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		4e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		5e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-04
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		5e-04
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		5e-04

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  179 bits (454), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 98/112 (87%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK D
Sbjct: 78  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126
           L  RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  176 bits (446), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 94/107 (87%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I +
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  162 bits (410), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 91/110 (82%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQ  FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK D
Sbjct: 87  AGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           L  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ
Sbjct: 147 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK D
Sbjct: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           L  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QN
Sbjct: 132 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  146 bits (369), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 86/116 (74%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK D
Sbjct: 82  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD 141
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           L   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD 
Sbjct: 142 LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDP 197

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 87/115 (75%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK D
Sbjct: 67  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129
           L   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD
Sbjct: 127 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 82/106 (77%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK D
Sbjct: 68  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           L   R V+  E  +FA+EN L+FLE SA T ++VEEAF++ A KIL
Sbjct: 128 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 81/106 (76%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK D
Sbjct: 65  AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           L   R V+  E  +FA+EN L+FLE SA T ++VEEAF++ A KIL
Sbjct: 125 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAH RAV  EE + FA+EN LLF E SA  ++NV++AF +    I Q + +  +D     
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL---- 185
Query: 135 SGIKVGYGRGQGPSGARDGTVS 156
            G     G   G S     T+S
Sbjct: 186 -GDSSANGNANGASAPNGPTIS 206

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  119 bits (298), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 86/124 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     ++
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 192
Query: 135 SGIK 138
           S +K
Sbjct: 193 SNVK 196

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 71/98 (72%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 71/98 (72%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 86  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 80/110 (72%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T R++F+++  W+++  ++A  N++ +LVGNKCD
Sbjct: 66  AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           L  +R V+ +EG + A  +G+ F+E SA+ A NVE+AF   A +I + +Q
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 75/111 (67%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L H RAV  +E   FA++N L F+E SA  + NVEEAF     +I + + +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 172

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  115 bits (289), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 56  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 115
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 116 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 82  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 142 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 65  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 125 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  115 bits (289), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 86  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 7/148 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
                     +G    +  +++  GGCC
Sbjct: 185 K-------EDKGNVNLKGQSLTNTGGCC 205

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 71/98 (72%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA GALLVYDIT++ +F ++  WL++ R +A+ N+ I+LVGNK D
Sbjct: 65  AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           L H R ++  +  Q+AK+  L F+E SA  A NVE AF
Sbjct: 125 LKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 76/105 (72%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 90  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F   AA+I
Sbjct: 150 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 69/98 (70%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ I LVGNK D
Sbjct: 68  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
              K G    +G S    G     GGCC
Sbjct: 185 KEDK-GNVNLKGQSLTNTG-----GGCC 206

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 69/98 (70%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ I LVGNK D
Sbjct: 62  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 122 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 74/105 (70%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           +  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 74/105 (70%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           +  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 76/105 (72%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVG KCD
Sbjct: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 125 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 79/115 (68%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 67  AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129
           LAH RAV  +E + FA EN +LF E SA  + NV++AF +    I Q + +  +D
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVD 181

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 75/105 (71%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK D
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
            AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 64  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 123
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 124 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 72/105 (68%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK D
Sbjct: 62  AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 73/105 (69%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT +ETF    +W+++ ++ A+P++ I L GNK D
Sbjct: 65  AGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKAD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA++R V  EE + +A +N LLF+E SA+TA NV + F+  A K+
Sbjct: 125 LANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 72/105 (68%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK D
Sbjct: 60  AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 119
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 120 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 71/111 (63%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK D
Sbjct: 82  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 71/111 (63%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK D
Sbjct: 67  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 177

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 72/105 (68%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 78  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I
Sbjct: 138 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 75/105 (71%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N++ +LVGNK D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE+AF+  AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 75/105 (71%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N++ +LVGNK D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  ++ V     ++FA   G+ FLE SA+ A NVE+AF+  AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D
Sbjct: 60  AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           +   R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 120 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 64  AGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 123
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF E SA+T+ NV E F   A K+ +N
Sbjct: 124 LANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK D
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           +   R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 137 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 181

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK D
Sbjct: 64  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 123
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           +   R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 124 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 168

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D
Sbjct: 60  AGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
               R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R +  A++VYDIT   +F   S W++D R     ++ IMLVGNK D
Sbjct: 59  AGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTD 118
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           LA +R ++ EEGEQ AKE  ++F+E SA+T  NV++ F + A+ +L+
Sbjct: 119 LADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 71/105 (67%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK D
Sbjct: 62  AGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK D
Sbjct: 60  AGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
               R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK D
Sbjct: 83  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++   ++  L  VN+ 
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL--VNNV 200
Query: 135 S 135
           S
Sbjct: 201 S 201

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 70/105 (66%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGAA A++V+D+T + +F     W+++ +   NPNM + L GNK D
Sbjct: 69  AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSD 128
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L   R V+ E+ + +A+ENGL F+E SA+TA NV+E F + A ++
Sbjct: 129 LLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 72/105 (68%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 62  AGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 121
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+
Sbjct: 122 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK D
Sbjct: 83  AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 142
Query: 75  LAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
               R +++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 143 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  105 bits (263), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A  N+  +L+GNK D
Sbjct: 86  AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 75  LAHRRAVSKEEGEQFAKENGLLF-LEASARTAQNVEEAFIKTAAKIL 120
           L+  R VS  E +  A+   +L  +E SA+ + NVEEAF++ A +++
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 70/105 (66%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCD
Sbjct: 62  AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L   R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK D
Sbjct: 63  AGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 70/105 (66%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R +  A++VYDIT   +F+  S W++D R     ++ IMLVGNK D
Sbjct: 71  AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 130
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L+ +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 69/105 (65%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCD
Sbjct: 63  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L   R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 123 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK D
Sbjct: 58  AGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 117
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 118 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK D
Sbjct: 70  AGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 129
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKC 73
           AGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N  +  LVGNK 
Sbjct: 72  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKI 131
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 133
           D    R V + EG +FA+++  LF+EASA+T   V+ AF +   KI+Q    G  ++ N 
Sbjct: 132 D-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQT--PGLWESENQ 188
Query: 134 QSGIKVG 140
            SG   G
Sbjct: 189 NSGPSSG 195

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 62/98 (63%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           +   R VS E G Q A   G  F EASA+   NV++ F
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK D
Sbjct: 73  AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 132
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK D
Sbjct: 63  AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++LVGNKCD
Sbjct: 79  AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L   R V  E+G + A + G  F EASA+   NV++ F +    I + + E
Sbjct: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 64/98 (65%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           +   R V  E+G+  A++ G  F EASA+   +V +AF
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I LVGNK D
Sbjct: 60  AGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119
Query: 75  LAH---RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
                  R V++EEGE+ A+E GLLF E SA+T +NV + F+    KI
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA G +L YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
               R VS E G Q A   G  F EASA+   NV++ F +    I +   E +LD  +  
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE-SLDTAD-- 181
Query: 135 SGIKVGYGRGQGP 147
                  G  QGP
Sbjct: 182 ---PAVTGAKQGP 191

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 67/98 (68%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + + GNKCD
Sbjct: 80  AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCD 139
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           L+  R V  ++ +++A+  G + +E SA+ A N+EE F
Sbjct: 140 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R +A A++VYDIT R++F + + W++D       ++ I LVGNK D
Sbjct: 58  AGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 117
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L   R V+ EEG Q A+E    F E SA+   N++  F KTA+K+
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+ + ++  +LVGNK D
Sbjct: 66  AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 124
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
              R+ V  E+  +FA + G+   E SA+   NVEE F
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
           AGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   NP+  I+L+GN
Sbjct: 92  AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD--IVLIGN 149
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           K DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++ +++
Sbjct: 150 KADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 50/62 (80%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 55  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 114
Query: 75  LA 76
           L 
Sbjct: 115 LT 116

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRSI +SY+R A G LL+YD+T  ++F ++  W++     A+  + IMLVGNK D
Sbjct: 85  AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144
Query: 75  LAH------RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           +        ++ V    GE+ A   G LF E SA+   N+ EA +  A ++
Sbjct: 145 IRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK D
Sbjct: 77  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 136
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L   R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 137 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK D
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L   R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK D
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L   R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKC 73
           AG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + N  I+L GNK 
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129
           DL  +RAV +EE  + A++ G+ + E SA    N+  A I+    ++    E ++D
Sbjct: 138 DLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA-IEMLLDLIMKRMERSVD 192

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
           AG E FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   NP+  I+L+GN
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD--IVLIGN 135
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           K DL  +R V++ +  + A++ G+ + E SA T QNVE++       I++ +++
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
           AG E FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   NP+  I+L+GN
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD--IVLIGN 135
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           K DL  +R V++ +  + A++ G+ + E SA T QNVE++       I++ +++
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + SI   YYRGA  A++V+DI+   T +   +W+   +   + N  I+LV NK D
Sbjct: 101 AGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKID 158
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
             ++  V   E +++A++N LLF++ SA+T  N++  F   A +I +NI
Sbjct: 159 -KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
           AG E FRS+T +++R A G LL +D+T +++F ++ +W    + +A   NP+  I+L+GN
Sbjct: 78  AGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD--IVLIGN 135
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 111
           K DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++G
Sbjct: 65  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           NK DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++ 
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVEL 182
Query: 131 VND 133
            N+
Sbjct: 183 YNE 185

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++G
Sbjct: 65  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           NK DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++ 
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVEL 182
Query: 131 VND 133
            N+
Sbjct: 183 YNE 185

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
           AG E FRS+T +++R A G LL +D+T +++F ++ +W    + +A   NP+  I+L+GN
Sbjct: 78  AGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD--IVLIGN 135
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 111
           K DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F +IT++YYRGA   +LV+  T RE+F  +SSW E        ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           L     +  EE E  AK   L F   S +   NV E F   A K LQ 
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 4   SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANP 62
           +Q+     L  AG E F ++   Y +   G  LVY IT + TFN L    E   R     
Sbjct: 50  AQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD 109
Query: 63  NMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 119
           ++ ++LVGNKCDL   R V KE+G+  A++ N   FLE+SA++  NV E F     +I
Sbjct: 110 DVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++G
Sbjct: 65  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           NK D  +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++ 
Sbjct: 125 NKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVEL 182
Query: 131 VND 133
            N+
Sbjct: 183 YNE 185

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 4   SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANP 62
           +Q+     L  AG E F ++   Y +   G  LVY IT + TFN L    E   R     
Sbjct: 48  AQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD 107
Query: 63  NMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 119
           ++ ++LVGNKCDL   R V KE+G+  A++ N   FLE+SA++  NV E F     +I
Sbjct: 108 DVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKC 73
           AGQE F ++   Y R   G LLV+ +T R +F  +  +     R        ++L+GNK 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           DL H+R V++EEG+Q A++  + ++EASA+   NV++AF     ++++  QE
Sbjct: 121 DLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF-HELVRVIRKFQE 171

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 15  AGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNK 72
           AGQE FR S+ + YYR     + VYD+T   +F+ L +W+E+ +QH   N +  +LVGNK
Sbjct: 77  AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 136
Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 119
           CDL     V  +  ++FA  + +   E SA+   +   VE  F+  A K+
Sbjct: 137 CDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AG E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++G
Sbjct: 65  AGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           NK DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++ 
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVEL 182
Query: 131 VND 133
            N+
Sbjct: 183 YNE 185

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 5   QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN 63
           Q+     L  AG E F ++   Y +   G  LVY IT + TFN L    E   R     +
Sbjct: 49  QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 119
           + ++LVGNKCDL   R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 5   QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN 63
           Q+     L  AG E F ++   Y +   G  LVY IT + TFN L    E   R     +
Sbjct: 49  QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 119
           + ++LVGNKCDL   R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 15  AGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNK 72
           AGQE FR S+ + YYR     + VYD T   +F+ L +W+E+ +QH   N +  +LVGNK
Sbjct: 86  AGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNK 145
Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 119
           CDL     V  +  ++FA  +     E SA+   +   VE  F   A K+
Sbjct: 146 CDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN----MSIMLVG 70
           AGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN N       +++G
Sbjct: 66  AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125
Query: 71  NKCDLAH-RRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           NK D    ++ VS++  ++ AK  G   LFL  SA+ A NV+ AF + A   LQ  Q
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQQNQ 181

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 9   FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMS 65
            W +   GQ     +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     
Sbjct: 60  IWDI--GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 66  IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           + LVGNK DL H R +  E+  +F +ENG      SA+T  +V   F K AA+IL
Sbjct: 118 VALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
           AGQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++G
Sbjct: 68  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 71  NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
           NK D+  R+ VS EE + + K+NG   + E SA+ + NV  AF +   +IL
Sbjct: 128 NKTDIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
           AGQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++G
Sbjct: 66  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 71  NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
           NK D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L
Sbjct: 126 NKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
           AGQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++G
Sbjct: 64  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 71  NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
           NK D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L
Sbjct: 124 NKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
           L  AGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVG
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           NK DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
           L  AGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVG
Sbjct: 59  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 118
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           NK DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
           L  AGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVG
Sbjct: 67  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           NK DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
           L  AGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVG
Sbjct: 57  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           NK DL  +R VS EE +  A +  + ++E SA+T  NV++ F     +I
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 56  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 115
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 116 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  ++ + E   R   + ++ ++LVGNKC
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           DL   R V  ++  + AK  G+ F+E SA+T Q VE+AF     +I Q
Sbjct: 137 DLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 55  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 114
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 115 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAGR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 54  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 113
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 114 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 54  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 113
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 114 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLV 69
           L  AG E + +I  +Y+R   G LLV+ IT  E+F   + + E   R  A  + + +++V
Sbjct: 60  LDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV 119
Query: 70  GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           GNK DL  RR V  EE    A+E G+ ++E SA+T  NV++ F     +I
Sbjct: 120 GNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLV 69
           L  AG E + +I  +Y+R   G LLV+ IT  E+F   + + E   R  A  + + +++V
Sbjct: 56  LDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV 115
Query: 70  GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           GNK DL  RR V  EE    A+E G+ ++E SA+T  NV++ F     +I
Sbjct: 116 GNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKC
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           DLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKC
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           DLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKC
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           DLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKC
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           DLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 10  WSLLQ----AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNM 64
           W++L     AGQE F ++   Y R   G L+VY +T + +F H+  + +   R     + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 65  SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAF 112
            ++LV NK DL H R V++++G++ A +  + ++E SA+    NV++ F
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE F ++   Y R   G LLV+ I  R++FN +   + +  R     +  ++LVGNK 
Sbjct: 65  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA 124
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           DL  +R V + E   F   + + + EASA+   NV+EAF
Sbjct: 125 DLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 10  WSLLQ----AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNM 64
           W++L     AGQE F ++   Y R   G L+VY +T + +F H+  + +   R     + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 65  SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAF 112
            ++LV NK DL H R V++++G++ A +  + ++E SA+    NV++ F
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 10  WSLLQ----AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNM 64
           W++L     AGQE F ++   Y R   G L+VY +T + +F H+  + +   R     + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 65  SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAF 112
            ++LV NK DL H R V++++G++ A +  + ++E SA+    NV++ F
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 10  WSLLQ----AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNM 64
           W++L     AGQE F ++   Y R   G L+VY +T + +F H+  + +   R     + 
Sbjct: 60  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 119
Query: 65  SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAF 112
            ++LV NK DL H R V++++G++ A +  + ++E SA+    NV++ F
Sbjct: 120 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 168

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 50  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           + ++LVGNKCDL   R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 110 VPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGN+CDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNRCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQAG-QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  G QE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
           L  AG E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVG
Sbjct: 59  LDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 118
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           NK DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQA-GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L   GQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
           AGQE F+S+   +YRGA   LL + +  R++F +L +W ++   +A+     +   +++G
Sbjct: 64  AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 71  NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
           NK D    R V+ EE + +  ENG   +LE SA+   NV  AF +   ++L
Sbjct: 124 NKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AG+E + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKC
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           DLA R  V   + +  A+  G+ ++E SA+T Q VE+AF
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 15  AGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNK 72
           AGQE   +I R  + R   G +LVYDIT R +F  +        +   P N++++LVGNK
Sbjct: 84  AGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNK 141
Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKI 119
            DL H R VS EEGE+ A E    F E SA T + N+ E F +   ++
Sbjct: 142 ADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AG E + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA  R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 73
           AGQ+ +  +  S+  G  G +LVY +T   +F  + S  +   + H    + ++LVGNK 
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL+  R V   EG++ A+  G  F+E+SAR  Q  +  F K   +I
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE   ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AG E + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 54  ETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 113
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 114 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AG E + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AG E + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AG E + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AG E + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AG E + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNKCDLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 60  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 118
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 119 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 175

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVG 70
           L  AG E + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVG
Sbjct: 74  LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 133
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           NKCDL   R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 134 NKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 72  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 130
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 131 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 72  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 130
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 131 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE    +   YY GA+GA+L +D+T R T  +L+ W+++ +        I++  NK D
Sbjct: 69  AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKID 128
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 116
           + +R+ +SK+   +  K     + E SA+TA N    F+  A
Sbjct: 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           + ++LVGNK DLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 109 VPMVLVGNKSDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++ +D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    YRGA   +L + +  + ++ N L  W+ + R+ A PN+ I+LVG K 
Sbjct: 65  AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKL 123
Query: 74  DL--------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
           DL         H   ++  +GE+  K+ G   ++E S++T QNV+  F  TA K++
Sbjct: 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKVV 178

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 62  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 120
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 121 VKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 168

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 69  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 127
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 128 VKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 175

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 119
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 120 VKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 167

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 6   ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
           E+    +L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + +
Sbjct: 50  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109
Query: 64  MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           + ++LVGNK DL   R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 110 VPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 69  AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 127
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 128 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 171

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVG 70
           L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVG
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           NK DL   R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 117 NKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVG 70
           L  AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVG
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           NK DL   R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 117 NKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 63  AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 121
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 122 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 165

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 67  AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
           +  R+   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           A QE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNK 
Sbjct: 59  AAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKX 118
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           DLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           A QE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNK 
Sbjct: 59  AAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKX 118
Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           DLA R  V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    YRGA   +L + +  + ++ +++  W+ + R +A P + I+LVG K 
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120
Query: 74  DLAHRR----------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 121
           DL   +           ++  +GE+  K  G  +++E S++T QNV+  F      +LQ
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQ 179

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 14/117 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    YRGA   LL + +  + ++ ++   WL + + +A P + I+LVG K 
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKL 120
Query: 74  DLAHRR----------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           DL   +          +++  +GE+  K  G + +LE S++T QNV+  F  TA ++
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-DTAIRV 176

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNK 72
            G   F ++ R         +LVY IT R++   L    E   +      ++ IMLVGNK
Sbjct: 59  TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118
Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           CD +  R V   E E  A+     F+E SA+   NV+E F
Sbjct: 119 CDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGN 71
           AGQ+ +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGN
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGN 119
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           K DL   R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGN 71
           AGQ+ +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGN
Sbjct: 57  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGN 114
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           K DL   R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 115 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 4   SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANP 62
           S  S    L  AG E F S+   Y +   G +LVY +  +++F  +    +   R     
Sbjct: 48  SSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE 107
Query: 63  NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
            + ++LVGNK DL   R VS  EG   A+E G  F+E SA++   V+E F
Sbjct: 108 KVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGN 71
           AGQ+ +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGN
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGN 119
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           K DL   R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGN 71
           AGQ+ +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGN
Sbjct: 60  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGN 117
Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           K DL   R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 118 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 26  SYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84
           S  +G +  ++VY I  R +F   S   ++  R H   ++ I+LVGNK DLA  R VS E
Sbjct: 73  SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 85  EGEQFAKENGLLFLEASARTAQNVEEAF 112
           EG   A      F+E SA    NV E F
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 12  LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIML 68
           L  AG + ++     Y+ G   A+LV+D++  E+F    +W E    AR      +  +L
Sbjct: 78  LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVL 137
Query: 69  VGNKCDL-AHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKTAAKILQNIQE 125
           V NK DL   R  V  +  + +A  N L F + SA    ++ +  F+  A    +N ++
Sbjct: 138 VANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35  LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
           L+VY IT R +F   + L   L  ARQ    ++ I+LVGNK DL   R VS  EG   A 
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 92  ENGLLFLEASARTAQNVEEAF 112
                F+E SA    NV+E F
Sbjct: 143 VFDXKFIETSAAVQHNVKELF 163

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35  LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
           L+VY IT R +F   + L   L  ARQ    ++ I+LVGNK DL   R VS  EG   A 
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 92  ENGLLFLEASARTAQNVEEAF 112
                F+E SA    NV+E F
Sbjct: 143 VFDCKFIETSAAVQHNVKELF 163

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    YRGA   +L + +  + ++ ++S  W+ + + +A P + I+LVG K 
Sbjct: 64  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKL 122
Query: 74  DLAHRR----------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 121
           DL   +           ++  +GE+  K  G   ++E S+++ +NV+  F      +LQ
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35  LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
           L+VY IT R +F   + L   L  ARQ    ++ I+LVGNK DL   R VS  EG   A 
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAV 142
Query: 92  ENGLLFLEASARTAQNVEEAF 112
                F+E SA    NV+E F
Sbjct: 143 VFDCKFIETSAAVQHNVKELF 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 35  LLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
           L+VY IT R +F   S     L  ARQ    ++ I+LVGNK DL   R VS  EG   A 
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAV 173
Query: 92  ENGLLFLEASARTAQNVEEAF 112
                F+E SA    NV+E F
Sbjct: 174 VFDCKFIETSAAVQHNVKELF 194

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 65  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 64  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 59  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 118
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 59  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 118
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKD 140
Query: 75  LAH----RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 112
           L      RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140
Query: 75  LAH----RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 112
           L      RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 35  LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93
           L+V+ +T R +F+ +   L   R    + ++ ++LVGNK DLA  R VS EEG   A   
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 160
Query: 94  GLLFLEASARTAQNVEEAF 112
               +E SA    N  E F
Sbjct: 161 SCKHIETSAALHHNTRELF 179

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 35  LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93
           L+V+ +T R +F+ +   L   R    + ++ ++LVGNK DLA  R VS EEG   A   
Sbjct: 90  LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 149
Query: 94  GLLFLEASARTAQNVEEAF 112
               +E SA    N  E F
Sbjct: 150 SCKHIETSAALHHNTRELF 168

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75  LAH----RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 112
           L      RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 35  LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93
           L+V+ +T R +F+ +   L   R    + ++ ++LVGNK DLA  R VS EEG   A   
Sbjct: 80  LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139
Query: 94  GLLFLEASARTAQNVEEAF 112
               +E SA    N  E F
Sbjct: 140 SCKHIETSAALHHNTRELF 158

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 64  AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123
Query: 75  L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L    H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH--ANPNMSIMLVGNK 72
            G   F ++ R         +LV+ +T +++   L    +   Q   +  ++ +MLVGNK
Sbjct: 64  TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123
Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
           CD   +R V   E +  A+E    F+E SA+   NV+E F
Sbjct: 124 CD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35  LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
           ++VY +T + +F   + L   L  ARQ    ++ I+LVGNK DL   R VS +EG   A 
Sbjct: 77  VIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAV 134
Query: 92  ENGLLFLEASARTAQNVEEAF 112
                F+E SA    NV+  F
Sbjct: 135 VFDCKFIETSAALHHNVQALF 155

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35  LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
           ++VY +T + +F   + L   L  ARQ    ++ I+LVGNK DL   R VS +EG   A 
Sbjct: 82  VIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAV 139
Query: 92  ENGLLFLEASARTAQNVEEAF 112
                F+E SA    NV+  F
Sbjct: 140 VFDCKFIETSAALHHNVQALF 160

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35  LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
           ++VY +T + +F   + L   L  ARQ    ++ I+LVGNK DL   R VS +EG   A 
Sbjct: 82  VIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAV 139
Query: 92  ENGLLFLEASARTAQNVEEAF 112
                F+E SA    NV+  F
Sbjct: 140 VFDCKFIETSAALHHNVQALF 160

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 61  AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 119
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQ+ +  +   +Y  A+  LL +D+T   +F+++ + W  +   H    + I++VG K 
Sbjct: 90  AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKT 148
Query: 74  DLAHRRA------------VSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTA 116
           DL   ++            V+   G++ A+  G + +LE SAR   NV   F + A
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 63  AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 121
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++   W+ + +++A PN+  +L+G + 
Sbjct: 74  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQI 132
Query: 74  DL------------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
           DL               + +  E+G++ AKE G   ++E SA T + ++  F +    IL
Sbjct: 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 124
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 125 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 120
           DL   +             ++  +G   AKE G + +LE SA T + ++  F +    +L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 121 Q 121
           +
Sbjct: 178 K 178

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 78  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 136
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 137 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +       Y      L+ + I   ++  ++        +H  PN+ I+LVGNK D
Sbjct: 61  AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75  LAHRRAVSKE------------EGEQFAKENGLL-FLEASARTAQNVEEAF 112
           L +    ++E            EG   A   G   ++E SA+T   V E F
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 86  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 86  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AG E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K 
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKL 269
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 69  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 127
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 128 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AG E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K 
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKL 269
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AG E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K 
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKL 269
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           +G   + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K D
Sbjct: 84  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143
Query: 75  L-----------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 107
           L            HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +   ++  ++   W+ + + H  PN+ I+LV NK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKK 139
Query: 74  DL---AHRR---------AVSKEEGEQFA-KENGLLFLEASARTAQNVEEAF 112
           DL    H R          V  ++G   A +     +LE SA+T + V E F
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           +G   + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K D
Sbjct: 63  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 122
Query: 75  L-----------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 107
           L            HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 27  YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP---NMSIMLVGNKCDLAHRRAVSK 83
           Y   A   L+VY +  R++F+  SS+LE    HA     ++  +L+GNK D+A  R V+K
Sbjct: 88  YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK 147
Query: 84  EEGEQFAKENGLLFLEASA 102
            EG   A   G LF E SA
Sbjct: 148 AEGVALAGRFGCLFFEVSA 166

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AG E +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AG E +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 59  AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AG E +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 86  AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
           AG E +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K 
Sbjct: 62  AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 120
Query: 74  DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL   +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 121 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           +G   + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K D
Sbjct: 79  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 138
Query: 75  L-----------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 107
           L            HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 139 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	6e-75
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-74
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-74
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-74
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-73
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-73
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	4e-72
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-71
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-71
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-70
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-70
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-69
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-69
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-69
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	6e-69
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-68
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-68
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-68
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-68
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	6e-68
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-68
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	8e-68
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-67
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-67
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-67
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	5e-67
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	8e-67
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	8e-67
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-66
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	5e-66
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	8e-66
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-65
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-65
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-65
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-64
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-64
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-63
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-63
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-63
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-62
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-60
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-59
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-56
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	7e-53
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-52
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-51
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	5e-51
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	6e-51
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	8e-51
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-51
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-50
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	6e-50
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	3e-49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-48
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-47
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-47
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-46
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-46
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-46
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-45
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-45
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	8e-45
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	6e-44
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-43
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-41
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	6e-38
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	8e-38
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-35
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-28
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-27
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-25
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-24
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-23
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	8e-23
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-22
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-21
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-21
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	9e-21
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-20
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-20
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	8e-20
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	7e-16
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	5e-07
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	9e-07
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-05
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-05
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-05
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-05
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-05
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-05
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	6e-05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-05
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	9e-05
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-04
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	2e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	2e-04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-04

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  220 bits (564), Expect = 6e-75
 Identities = 73/122 (59%), Positives = 90/122 (73%), Gaps = 2/122 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK D
Sbjct: 67  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 126

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD   ++
Sbjct: 127 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD--PER 184

Query: 135 SG 136
            G
Sbjct: 185 MG 186

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  221 bits (564), Expect = 2e-74
 Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 6/154 (3%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LAH RAV  EE + FA+EN LLF E SA  ++NV++AF +    I Q + +  +D  +  
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSS 189

Query: 135 SGIKVGYGRGQGP------SGARDGTVSQRGGCC 162
           +                      +   +    CC
Sbjct: 190 ANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  219 bits (560), Expect = 4e-74
 Identities = 85/114 (74%), Positives = 98/114 (85%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK D
Sbjct: 78  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128
           L  RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G  
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  219 bits (559), Expect = 7e-74
 Identities = 56/148 (37%), Positives = 89/148 (60%), Gaps = 7/148 (4%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
              K       G    +  +++  GGCC
Sbjct: 185 KEDK-------GNVNLKGQSLTNTGGCC 205

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  218 bits (557), Expect = 1e-73
 Identities = 72/115 (62%), Positives = 86/115 (74%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK D
Sbjct: 82  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD 141

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129
           L   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD
Sbjct: 142 LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  217 bits (556), Expect = 1e-73
 Identities = 55/124 (44%), Positives = 86/124 (69%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     ++
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 192

Query: 135 SGIK 138
           S +K
Sbjct: 193 SNVK 196

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  213 bits (546), Expect = 4e-72
 Identities = 75/108 (69%), Positives = 90/108 (83%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK D
Sbjct: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           L  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QN
Sbjct: 132 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  213 bits (544), Expect = 1e-71
 Identities = 56/126 (44%), Positives = 76/126 (60%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L H RAV  +E   FA++N L F+E SA  + NVEEAF     +I + + +  +      
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

Query: 135 SGIKVG 140
                 
Sbjct: 182 DESPGN 187

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  212 bits (542), Expect = 3e-71
 Identities = 51/134 (38%), Positives = 72/134 (53%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 65  AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           +   R VS E G Q A   G  F EASA+   NV++ F +    I + + E    A    
Sbjct: 125 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAV 184

Query: 135 SGIKVGYGRGQGPS 148
           +G K G       +
Sbjct: 185 TGAKQGPQLTDQQA 198

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  210 bits (537), Expect = 1e-70
 Identities = 52/111 (46%), Positives = 71/111 (63%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK D
Sbjct: 82  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  209 bits (534), Expect = 5e-70
 Identities = 50/116 (43%), Positives = 74/116 (63%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK D
Sbjct: 83  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           LA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++   ++  L  
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVN 198

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  207 bits (528), Expect = 3e-69
 Identities = 55/105 (52%), Positives = 72/105 (68%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 86  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L H RAV  +E   FA++NGL F+E SA  + NVE AF     +I
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  207 bits (529), Expect = 3e-69
 Identities = 55/134 (41%), Positives = 76/134 (56%), Gaps = 1/134 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK D
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           +   R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I    L  V + 
Sbjct: 137 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNG 195

Query: 135 SGIKVGYGRGQGPS 148
               +    G G S
Sbjct: 196 KEGNISINSGSGNS 209

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  205 bits (524), Expect = 5e-69
 Identities = 50/108 (46%), Positives = 75/108 (69%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  205 bits (525), Expect = 6e-69
 Identities = 49/111 (44%), Positives = 77/111 (69%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK D
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
            AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++ +   +
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  204 bits (521), Expect = 2e-68
 Identities = 50/116 (43%), Positives = 76/116 (65%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           +  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I   + +     
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  204 bits (521), Expect = 3e-68
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKC 73
           AG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + N  I+L GNK 
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           DL  +RAV +EE  + A++ G+ + E SA    N+  A       I++ ++     +
Sbjct: 138 DLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVDKS 194

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  203 bits (520), Expect = 3e-68
 Identities = 46/111 (41%), Positives = 71/111 (63%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGAA A++V+D+T + +F     W+++ +   NPNM + L GNK D
Sbjct: 69  AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSD 128

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L   R V+ E+ + +A+ENGL F+E SA+TA NV+E F + A ++ +    
Sbjct: 129 LLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  204 bits (521), Expect = 6e-68
 Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 1/122 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKC 73
           AGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   N  I+L+GNK 
Sbjct: 92  AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 151

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 133
           DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++ +++        
Sbjct: 152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQIP 211

Query: 134 QS 135
            +
Sbjct: 212 DT 213

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  203 bits (519), Expect = 6e-68
 Identities = 46/111 (41%), Positives = 67/111 (60%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++LVGNKCD
Sbjct: 79  AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L   R V  E+G + A + G  F EASA+   NV++ F +    I + + E
Sbjct: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  203 bits (519), Expect = 6e-68
 Identities = 45/111 (40%), Positives = 68/111 (61%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           +   R V  E+G+  A++ G  F EASA+   +V +AF +    I   + +
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  202 bits (517), Expect = 8e-68
 Identities = 44/107 (41%), Positives = 69/107 (64%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCD
Sbjct: 63  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L   R V + + + +A     +F+E SA+ A N+ E FI+ + +I  
Sbjct: 123 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  203 bits (518), Expect = 1e-67
 Identities = 51/109 (46%), Positives = 79/109 (72%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 90  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +
Sbjct: 150 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  201 bits (514), Expect = 2e-67
 Identities = 37/107 (34%), Positives = 63/107 (58%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK D
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L   R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  202 bits (517), Expect = 2e-67
 Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 10/148 (6%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK D
Sbjct: 73  AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 132

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           LA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +             D 
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSR-EDM 191

Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
             IK+   + Q  S          GGC 
Sbjct: 192 IDIKLEKPQEQPVSE---------GGCL 210

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  200 bits (512), Expect = 5e-67
 Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+   ++  +LVGNK D
Sbjct: 66  AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND 124

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126
              R+ V  E+  +FA + G+   E SA+   NVEE F      +L+  ++ 
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  200 bits (512), Expect = 8e-67
 Identities = 50/113 (44%), Positives = 74/113 (65%), Gaps = 1/113 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A  N+  +L+GNK D
Sbjct: 86  AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145

Query: 75  LAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEG 126
           L+  R VS  E +  A+   +L  +E SA+ + NVEEAF++ A +++      
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  200 bits (510), Expect = 8e-67
 Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D
Sbjct: 60  AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           +   R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I  
Sbjct: 120 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  200 bits (510), Expect = 1e-66
 Identities = 49/110 (44%), Positives = 76/110 (69%), Gaps = 1/110 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK D
Sbjct: 83  AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 142

Query: 75  LAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
               R +++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 143 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  199 bits (507), Expect = 5e-66
 Identities = 58/127 (45%), Positives = 80/127 (62%), Gaps = 4/127 (3%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKC 73
           AGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N +  MLVGNK 
Sbjct: 72  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 131

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 133
           D    R V + EG +FA+++ +LF+EASA+T   V+ AF +   KI+Q    G  ++ N 
Sbjct: 132 DK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP--GLWESENQ 188

Query: 134 QSGIKVG 140
            SG   G
Sbjct: 189 NSGPSSG 195

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  199 bits (507), Expect = 8e-66
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGN 71
           AG + ++     Y+ G   A+LV+D++  E+F    +W E  +         +  +LV N
Sbjct: 81  AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140

Query: 72  KCDLAH-RRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFIKTAAKILQNIQEGALD 129
           K DL   R  V  +  + +A  N L F + SA    ++ +  F+  A    +N ++    
Sbjct: 141 KTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVAA 200

Query: 130 AVNDQS 135
             +   
Sbjct: 201 FQDACR 206

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  197 bits (502), Expect = 2e-65
 Identities = 49/105 (46%), Positives = 70/105 (66%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R +  A++VYDIT   +F+  S W++D R     ++ IMLVGNK D
Sbjct: 71  AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 130

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L+ +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  197 bits (502), Expect = 2e-65
 Identities = 41/111 (36%), Positives = 70/111 (63%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + + GNKCD
Sbjct: 80  AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCD 139

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L+  R V  ++ +++A+  G + +E SA+ A N+EE F   + +I      
Sbjct: 140 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 190

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  196 bits (500), Expect = 3e-65
 Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGN 71
            GQ     +   Y  GA G LLVYDIT  ++F +L  W    ++    +     + LVGN
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123

Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           K DL H R +  E+  +F +ENG      SA+T  +V   F K AA+IL     
Sbjct: 124 KIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  195 bits (496), Expect = 3e-64
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + SI   YYRGA  A++V+DI+   T +   +W+   +   + N  I+LV NK D
Sbjct: 101 AGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKID 158

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
                 V   E +++A++N LLF++ SA+T  N++  F   A +I +NI 
Sbjct: 159 KNK-FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  195 bits (497), Expect = 3e-64
 Identities = 35/120 (29%), Positives = 59/120 (49%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE    +   YY GA+GA+L +D+T R T  +L+ W+++ +        I++  NK D
Sbjct: 69  AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKID 128

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           + +R+ +SK+   +  K     + E SA+TA N    F+  A           +  VN +
Sbjct: 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLE 188

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  191 bits (489), Expect = 1e-63
 Identities = 44/107 (41%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F +IT++YYRGA   +LV+  T RE+F  +SSW E        ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L     +  EE E  AK   L F   S +   NV E F   A K LQ
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  192 bits (491), Expect = 1e-63
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRSI +SY+R A G LL+YD+T  ++F ++  W++     A+  + IMLVGNK D
Sbjct: 85  AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144

Query: 75  LAH------RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           +        ++ V    GE+ A   G LF E SA+   N+ EA +  A ++ +
Sbjct: 145 IRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  192 bits (490), Expect = 1e-63
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 15  AGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNK 72
           AGQE FR S+ + YYR     + VYD+T   +F+ L +W+E+ +QH   N +  +LVGNK
Sbjct: 77  AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 136

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTA---QNVEEAFIKTAAKILQN 122
           CDL     V  +  ++FA  + +   E SA+      +VE  F+  A K+  +
Sbjct: 137 CDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  190 bits (485), Expect = 1e-62
 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++G
Sbjct: 65  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124

Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
           NK DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+   E  L  
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 184

Query: 131 VNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 162
                 IK+        S            C 
Sbjct: 185 -EFPEPIKLDKNERAKASA---------ESCS 206

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  184 bits (470), Expect = 1e-60
 Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 6/114 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AGQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++G
Sbjct: 64  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123

Query: 71  NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNI 123
           NK D++  R VS EE + + ++NG   + E SA+ A NV  AF +   ++L   
Sbjct: 124 NKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  180 bits (459), Expect = 5e-59
 Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN         +++G
Sbjct: 66  AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125

Query: 71  NKCDLAH-RRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           NK D    ++ VS++  ++ AK  G +     SA+ A NV+ AF + A   LQ  Q
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  174 bits (444), Expect = 4e-56
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D
Sbjct: 72  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVD 130

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           +  R+     +   F ++  L + + SA++  N E+ F+  A K++ +   
Sbjct: 131 IKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  165 bits (419), Expect = 7e-53
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE F ++   Y R   G LLV+ I  R++FN +        R     +  ++LVGNK 
Sbjct: 65  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA 124

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           DL  +R V + E   F   + + + EASA+   NV+EAF +    + + 
Sbjct: 125 DLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  163 bits (414), Expect = 2e-52
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 15  AGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNK 72
             Q       +    +     L+V+ +T R +F+ +   L        + ++ ++LVGNK
Sbjct: 59  WEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
            DLA  R VS EEG   A       +E SA    N  E F     +I  
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  161 bits (409), Expect = 2e-51
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK 
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL  +R VS EE +  A +  + ++E SA+T  NV++ F     +I
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  160 bits (407), Expect = 5e-51
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK 
Sbjct: 74  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 133

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I     E
Sbjct: 134 DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  160 bits (408), Expect = 6e-51
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK 
Sbjct: 70  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 129

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 133
           DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I     E + +    
Sbjct: 130 DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEK--- 186

Query: 134 QSGIKVGYGRGQGPSGARDGTVSQRGGCC 162
                       G    +      R  CC
Sbjct: 187 -----------NGKKKRKSLAKRIRERCC 204

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  160 bits (407), Expect = 8e-51
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQ+ +  +  S+  G  G +LVY +T   +F  + S  +     H    + ++LVGNK 
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL+  R V   EG++ A+  G  F+E+SAR  Q  +  F K   +I
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  160 bits (406), Expect = 9e-51
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 2/113 (1%)

Query: 15  AGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 72
             Q       R    +     L+V+ +T R +F+ +   L        + ++ ++LVGNK
Sbjct: 80  WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
            DLA  R VS EEG   A       +E SA    N  E F     +I      
Sbjct: 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGR 192

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  157 bits (399), Expect = 5e-50
 Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 15  AGQESFRSIT--RSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 71
              E         S  +G +  ++VY I  R +F   S       R H   ++ I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119

Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127
           K DLA  R VS EEG   A      F+E SA    NV E F     ++    ++ A
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDSA 175

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  157 bits (400), Expect = 6e-50
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQ+ +    ++Y     G +LVY +T  ++F  +               + IMLVGNK 
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL   R +S EEG+  A+     FLE+SA+  Q   + F +   + 
Sbjct: 122 DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  155 bits (394), Expect = 3e-49
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
             Q+  R +           ++VY +T + +F   S       R     ++ I+LVGNK 
Sbjct: 57  WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           DL   R VS +EG   A      F+E SA    NV+  F     +I  
Sbjct: 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  153 bits (388), Expect = 2e-48
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++LVGNK 
Sbjct: 59  AGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL   R VS  EG   A+E G  F+E SA++   V+E F +   ++
Sbjct: 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  150 bits (382), Expect = 2e-47
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  +  ++ ++LVGNK 
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS 118

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           DLA  R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 119 DLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  150 bits (382), Expect = 3e-47
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 2/109 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++LV NK 
Sbjct: 74  AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 121
           DL H R V++++G++ A +  + ++E SA+    NV++ F      I Q
Sbjct: 134 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  148 bits (376), Expect = 2e-46
 Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKC
Sbjct: 59  AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118

Query: 74  DLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           DL   R V KE+G+  A++     FLE+SA++  NV E F     +I +
Sbjct: 119 DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  148 bits (376), Expect = 2e-46
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNK 72
            G   F ++ R         +LVY IT R++   L    E   +      ++ IMLVGNK
Sbjct: 59  TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           CD +  R V   E E  A+     F+E SA+   NV+E F +      +
Sbjct: 119 CDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  149 bits (377), Expect = 3e-46
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
            G+  +  +     +     L+VY IT R +F   S       R     ++ I+LVGNK 
Sbjct: 98  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL   R VS  EG   A      F+E SA    NV+E F     ++
Sbjct: 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  145 bits (369), Expect = 3e-45
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 2/125 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKC
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 133
           DL   R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I ++ ++ + D    
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKK 178

Query: 134 QSGIK 138
           +   K
Sbjct: 179 KKKSK 183

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  145 bits (369), Expect = 4e-45
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
           AGQE        + R   G +LVYDIT R +F  +              N++++LVGNK 
Sbjct: 84  AGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 121
           DL H R VS EEGE+ A E    F E SA T + N+ E F +   ++ +
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  145 bits (368), Expect = 6e-45
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ--HANPNMSIMLVGNK 72
            G   F ++ R         +LV+ +T +++   L    +   Q   +  ++ +MLVGNK
Sbjct: 64  TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123

Query: 73  CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 132
           CD   +R V   E +  A+E    F+E SA+   NV+E F +      +      +D   
Sbjct: 124 CDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKR 182

Query: 133 DQSGIKVGYGRG 144
                +    +G
Sbjct: 183 SGKQKRTDRVKG 194

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  144 bits (364), Expect = 8e-45
 Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 3/110 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I LVGNK D
Sbjct: 60  AGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119

Query: 75  LAH---RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
                  R V++EEGE+ A+E GLLF E SA+T +NV + F+    KI  
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  142 bits (361), Expect = 4e-44
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
           A  ++ R+  R Y   A   L+VY +  R++F+  SS+LE    HA     ++  +L+GN
Sbjct: 77  ADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN 135

Query: 72  KCDLAHRRAVSKEEGEQFAKENGLLFLEASART-AQNVEEAFIKTAAKI 119
           K D+A  R V+K EG   A   G LF E SA    ++V+  F +   + 
Sbjct: 136 KLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  142 bits (361), Expect = 6e-44
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKC 73
           AGQE + ++   Y R   G L V+ I   ++F  ++ + E  ++  +  ++ ++LVGNKC
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           DL   R V  ++  + AK  G+ F+E SA+T Q VE+AF     +I Q
Sbjct: 137 DL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  141 bits (358), Expect = 2e-43
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
            G+  +  +     +     L+VY IT R +F   S       R     ++ I+LVGNK 
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL   R VS  EG   A      F+E SA    NV+E F     ++
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  135 bits (343), Expect = 2e-41
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKC 73
           AG+E F S    +    A  L VYD+++ +   + +  WL + +  A  +  ++LVG   
Sbjct: 64  AGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHL 122

Query: 74  DLAHRR---AVSKEEGEQFAKENGL-----LFLEASARTAQNVEEAFIKTAAKILQ 121
           D++  +   A   +  ++   + G           +   +  + +       + L 
Sbjct: 123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  134 bits (339), Expect = 6e-38
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
            GQE   +  + +   ++  +L+ D     T ++   WL    ++      +++V NK D
Sbjct: 106 GGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG-GKSPVIVVMNKID 161

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
                 + +++  +        F   S +    VE       + +L 
Sbjct: 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  126 bits (320), Expect = 8e-38
 Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKC 73
            G    +     +       + V+ +    +F  + ++        N   + ++LVG + 
Sbjct: 75  GGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129

Query: 74  DL--AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQE 125
            +  A+ R +      + + +     + E  A    NVE  F   A K++   ++
Sbjct: 130 AISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  120 bits (303), Expect = 2e-35
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVG- 70
           AG    +     +   A   + V+ +    +F  +S         R      +++ LVG 
Sbjct: 62  AGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 116

Query: 71  -NKCDLAHRRAVSKEEGEQF-AKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128
            ++   +  R V         A      + E  A    NV+  F + A K++   ++  L
Sbjct: 117 QDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176

Query: 129 DA 130
            A
Sbjct: 177 LA 178

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  103 bits (259), Expect = 3e-28
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MFFSQESFFWSLLQAGQESF--RSITRSYYRGAAGALLVYDITR--RETFNHLSSWLEDA 56
           +  +++  ++   Q G E    +           G LL  D++R     F+    ++ + 
Sbjct: 131 LASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNL 190

Query: 57  RQHANP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 115
                     I++V  KCD    R +        +K+N L  +E SAR+  NV+ AF   
Sbjct: 191 YNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTL 249

Query: 116 AAKI 119
              I
Sbjct: 250 VQLI 253

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  101 bits (253), Expect = 1e-27
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y  +   LL + +  R +F+++S+ W  + + +       +LVG K 
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKV 137

Query: 74  DLAH--RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           DL       V+K+EG+   ++ G + ++EAS+     + E F + +   
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF-EKSVDC 185

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 94.7 bits (236), Expect = 2e-25
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 14/117 (11%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    YRGA   +L + +  + ++ ++S  W+ + + +A P + I+LVG K 
Sbjct: 64  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKL 122

Query: 74  DL----------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           DL               ++  +GE+  K  G   ++E S+++ +NV+  F   A ++
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF-DAAIRV 178

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 92.8 bits (231), Expect = 3e-24
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 11/108 (10%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    YRGA   +L + +  + ++ ++   W+ + R+ A PN+ I+LVG K 
Sbjct: 65  AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKL 123

Query: 74  DL--------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL         H   ++  +GE+  K+ G   ++E S++T QNV+  F
Sbjct: 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 89.8 bits (223), Expect = 4e-23
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQ+ +  +   +Y  A+  LL +D+T   +F+++ + W  +        + I++VG K 
Sbjct: 90  AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKT 148

Query: 74  DLAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           DL   ++            V+   G++ A+  G + +LE SAR   NV   F + AA++
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF-QEAAEV 206

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 88.7 bits (220), Expect = 8e-23
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + I   ++  ++   W  + +    PN+ I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKK 139

Query: 74  DL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTAA 117
           DL              +  V  EEG   A       +LE SA+T + V E F    +   
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

Query: 118 KI 119
           ++
Sbjct: 200 QV 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 87.5 bits (217), Expect = 3e-22
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 16/119 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +   ++  ++   W+ + +    PN+ I+LV NK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKK 139

Query: 74  DLAH------------RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           DL              +  V  ++G   A       +LE SA+T + V E F +TA + 
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATRA 197

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 14/118 (11%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y     +L+ + +    +F ++ +      +H  PN  I+LVG K D
Sbjct: 61  AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120

Query: 75  L------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           L                 ++  +G   AKE G + +LE SA T + ++  F   A + 
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF-DEAIRA 177

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 84.1 bits (208), Expect = 5e-21
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 18/119 (15%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F N  + W  + R H  PN  I+LVG K 
Sbjct: 86  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144

Query: 74  DL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 116
           DL                 ++  +G   AKE G + +LE SA T + ++  F   I+  
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 82.8 bits (205), Expect = 9e-21
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 19/120 (15%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           +G   + ++    Y  +   L+ +DI+R ET + +   W  + ++   PN  ++LVG K 
Sbjct: 63  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKS 121

Query: 74  DL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQN-VEEAF---IKTA 116
           DL              +  VS ++G   AK+ G   ++E SA  ++N V + F       
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 81.3 bits (201), Expect = 5e-20
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 19/120 (15%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           +G   + ++    Y  +   L+ +DI+R ET + +   W  + ++   PN  ++LVG K 
Sbjct: 84  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKS 142

Query: 74  DL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQN-VEEAF---IKTA 116
           DL              +  VS ++G   AK+ G   ++E SA  ++N V + F       
Sbjct: 143 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 81.5 bits (201), Expect = 7e-20
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 17/120 (14%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
           +G   + ++    Y  +   LL +DI+R ET  + L  W  +   +  P+  ++L+G K 
Sbjct: 83  SGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKT 141

Query: 74  DLAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQ-NVEEAFIKTAAKI 119
           DL    +            +S E+G   AK+ G   +LE SA T++ ++   F +TA+ +
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF-RTASML 200

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 80.9 bits (200), Expect = 8e-20
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 15/112 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKC 73
           AGQ+ F  +    Y      LL + +    +F +    W+ + R H  P   I+LVG + 
Sbjct: 76  AGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQS 134

Query: 74  DLAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
           DL                 V +E  +  A+E     ++E SA T +N++E F
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 80.2 bits (198), Expect = 1e-19
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 16/119 (13%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKC 73
           AGQE +  +    Y      L+ + +    +F +    W+ + +++A PN+  +L+G + 
Sbjct: 74  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQI 132

Query: 74  DLAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
           DL                 +  E+G++ AKE G   ++E SA T + ++  F   A   
Sbjct: 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF-DEAIIA 190

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 72.3 bits (177), Expect = 7e-16
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 18/119 (15%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
           AG E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K 
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKL 269

Query: 74  DL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 116
           DL                 ++  +G   AKE G + +LE SA T + ++  F   I+  
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI----MLVG- 70
           GQ  + +  +   RG  G + V D        +  S        A   +++    +++  
Sbjct: 83  GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142

Query: 71  NKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127
           NK DL    A+  E        E     LEA A   + V E   + +  +L  +  G+
Sbjct: 143 NKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAGGS 198

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 16/120 (13%)

Query: 16  GQESFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVG 70
           GQ  F   T      +RG    + V D      E    L   +  A +  NP+M+  +  
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFI 136

Query: 71  NKCDLAH-------RRAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           +K D          +R + +   +  A    E   L    ++    ++ EAF K   K++
Sbjct: 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 196

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 46.1 bits (109), Expect = 9e-07
 Identities = 19/149 (12%), Positives = 51/149 (34%), Gaps = 21/149 (14%)

Query: 2   FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFN---HLSSWLEDARQ 58
              Q+ F  +        F       ++     + V+D+   E        +  L+  R+
Sbjct: 59  CGGQDVFMEN-------YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK 111

Query: 59  HANPNMSIMLVGNKCDL--AHRRAVSKEEGEQFAKEN------GLLFLEASARTAQNVEE 110
           + +P+  I ++ +K DL    +R    +   +   E         L    ++   +++ +
Sbjct: 112 Y-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYK 170

Query: 111 AFIKTAAKILQNIQ--EGALDAVNDQSGI 137
           A+ +    ++ N+   +  L    +    
Sbjct: 171 AWSQIVCSLIPNMSNHQSNLKKFKEIMNA 199

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 22/110 (20%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS--IML 68
           G  S R   R YY      + V D   R+        +  ++           +   I++
Sbjct: 60  GLTSIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSELVAMLEEEELRKAILV 112

Query: 69  V-GNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
           V  NK D+    A++  E          K+      + SA     ++EA 
Sbjct: 113 VFANKQDMEQ--AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 22/110 (20%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS--IML 68
           GQ   R   R Y+      + V D T R+        +  A+           +   ++L
Sbjct: 75  GQTGVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHELYALLDEDELRKSLLL 127

Query: 69  V-GNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
           +  NK DL    A S+ E  EQ             +++S++T   + E  
Sbjct: 128 IFANKQDLPD--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
           GQ S R   R YY   A  + V D T ++  +  S  L    Q      + +LV  NK D
Sbjct: 71  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 75  LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
                A+S  E  ++      K+     + +SA   + + E  
Sbjct: 131 QPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---ANPNMSIMLVGNK 72
           GQ  +R++   YY+     + V D + R         L+    H    +  + I+   NK
Sbjct: 76  GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANK 135

Query: 73  CDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
            DL    AV+  +  +       K+       + A   + ++E  
Sbjct: 136 MDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 22/110 (20%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS--IML 68
           GQ+  R + R Y++   G + V D   RE        + +AR+      A   +   ++L
Sbjct: 53  GQDKIRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLL 105

Query: 69  V-GNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
           V  NK DL +  A++  E  ++      +          A +   + E  
Sbjct: 106 VFANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 18/139 (12%)

Query: 16  GQESFRS---ITRSYYRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVG 70
           GQ ++      +   ++     + V D          +L+  +E A +  NP+++I ++ 
Sbjct: 55  GQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLI 113

Query: 71  NKCDL-------AHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAFIKTAAKIL 120
           +K D          +R + +  GE+  +        +   T     ++ EAF +   K++
Sbjct: 114 HKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLI 173

Query: 121 QNIQ--EGALDAVNDQSGI 137
             +   E  LD +   S I
Sbjct: 174 PELSFLENMLDNLIQHSKI 192

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
           GQ+  R + R Y++   G + V D   RE     +  L+   Q      +++LV  NK D
Sbjct: 82  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141

Query: 75  LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
           + +  A+   E  ++      +          A     + +  
Sbjct: 142 MPN--AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 14/118 (11%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGN 71
           GQES RS   +YY      ++V D T RE  +     L   L            +++  N
Sbjct: 69  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFAN 125

Query: 72  KCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           K D+     ++  E  +       K++        A T + + +      +++   ++
Sbjct: 126 KQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 22/110 (20%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS---IM 67
           GQ+S RS  R+Y+    G + V D   R+        ++D ++          ++   ++
Sbjct: 71  GQKSLRSYWRNYFESTDGLIWVVDSADRQ-------RMQDCQRELQSLLVEERLAGATLL 123

Query: 68  LVGNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
           +  NK DL    A+S     E       + +       SA T +++    
Sbjct: 124 IFANKQDLPG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
           GQES RS   +YY      ++V D T RE  +     L     H +   + +L+  NK D
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 75  LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
           +     ++  E  +       K++        A T + + +  
Sbjct: 134 VKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 12/99 (12%)

Query: 18  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77
           + F S+        A  + + DI     F+   S++    + A  N  I+LVGNK DL  
Sbjct: 59  DDFLSMLHRIGESKALVVNIVDI-----FDFNGSFIPGLPRFAADN-PILLVGNKADLLP 112

Query: 78  RRAVSKEEGE---QFAKENGLLFLEA---SARTAQNVEE 110
           R     +      + A+E GL  ++    SA     + +
Sbjct: 113 RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAK 151

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 35  LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG 94
           L + D T  +  +    W  +        + I +V NK D+         E    ++ NG
Sbjct: 88  LFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITVVRNKADIT-------GETLGMSEVNG 139

Query: 95  LLFLEASARTAQNVEE 110
              +  SART + V+ 
Sbjct: 140 HALIRLSARTGEGVDV 155

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ--------HANPNMSIM 67
           GQ  FRS+   Y RG +  + + D   +E        +E ++              + ++
Sbjct: 76  GQPRFRSMWERYCRGVSAIVYMVDAADQE-------KIEASKNELHNLLDKPQLQGIPVL 128

Query: 68  LVGNKCDLAHRRAVSKEE 85
           ++GNK DL    A+ ++E
Sbjct: 129 VLGNKRDLPG--ALDEKE 144

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 22/110 (20%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS---IM 67
           GQ   R   RSY+      + V D   R+         E+  Q          +S   ++
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRK-------RFEETGQELTELLEEEKLSCVPVL 121

Query: 68  LVGNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 112
           +  NK DL    A    E  E       ++        SA T + V++  
Sbjct: 122 IFANKQDLLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.98
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.94
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.93
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.92
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.92
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.92
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.92
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.91
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.91
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.91
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.91
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.91
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.91
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.9
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.9
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.9
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.9
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.9
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.9
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.9
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.9
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.9
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.9
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.9
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.9
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.9
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.9
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.9
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.9
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.9
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.9
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.9
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.89
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.89
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.89
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.89
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.89
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.89
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.89
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.89
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.89
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.89
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.89
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.89
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.89
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.89
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.89
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.89
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.89
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.89
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.89
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.88
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.88
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.88
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.88
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.88
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.88
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.88
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.88
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.87
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.87
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.87
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.87
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.87
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.87
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.86
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.86
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.86
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.86
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.86
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.86
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.86
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.85
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.85
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.85
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.84
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.84
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.84
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.84
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.84
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.84
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.83
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.83
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.83
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.83
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.83
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.82
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.82
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.82
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.81
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.7
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.79
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.79
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.78
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.78
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.78
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.77
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.77
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.77
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.77
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.74
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.74
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.74
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.72
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.69
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.68
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.68
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.67
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.67
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.65
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.64
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.62
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.62
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.61
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.61
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.6
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.58
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.57
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.57
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.56
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.55
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.54
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.54
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.53
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.53
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.52
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.52
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.5
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.5
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.49
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.49
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.49
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.48
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.48
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.44
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.44
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.43
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.43
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.43
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.43
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.43
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.42
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.42
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.42
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.41
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.4
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.4
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.4
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.4
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.38
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.36
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.36
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.34
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.34
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.32
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.29
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.28
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.27
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.27
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.27
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.26
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.22
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.2
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.14
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.11
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.1
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.1
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.09
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.08
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.07
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.05
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.03
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.03
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.01
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.97
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.96
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.95
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.94
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.92
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.89
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.88
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.75
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.75
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.73
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.69
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.68
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.67
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.57
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.53
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.46
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.45
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.37
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.36
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.3
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.29
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.28
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.25
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.2
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.12
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.32
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.91
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.06
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.68
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.37
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.21
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.44
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.27
3cwq_A	209	Para family chromosome partitioning protein; alpha	93.95
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.57
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	92.11
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	91.91
3end_A	307	Light-independent protochlorophyllide reductase ir	91.46
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	90.48
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	90.19
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	88.76
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	88.04
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	87.84
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	86.51
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	86.45
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	86.19
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	80.75
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	80.51
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	80.46
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	80.17

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.98  E-value=9.1e-32  Score=196.83  Aligned_cols=117  Identities=43%  Similarity=0.685  Sum_probs=105.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+|+|..+++.|++++|++|+|||+++..||+.+..|+..+.....+++|++|||||+|+.+.+.++.++
T Consensus        63 ~l~iwD--taGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e  140 (216)
T 4dkx_A           63 RLQLWD--TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEE  140 (216)
T ss_dssp             EEEEEC--CSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEE--CCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHH
Confidence            455555  999999999999999999999999999999999999999999988877889999999999998888999999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      +..+++.++++|+++||++|.||+++|+.|++.+.....
T Consensus       141 ~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          141 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES  179 (216)
T ss_dssp             HHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred             HhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999988865543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=1.9e-26  Score=166.32  Aligned_cols=122  Identities=42%  Similarity=0.761  Sum_probs=110.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|||||+++..+|..+..|+..+........|++||+||+|+.+.+.+..++
T Consensus        58 ~~~l~D--t~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~  135 (206)
T 2bcg_Y           58 KLQIWD--TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDV  135 (206)
T ss_dssp             EEEEEC--CTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred             EEEEEe--CCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence            456666  999999999999999999999999999999999999999999988766679999999999998777788889


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  129 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~  129 (163)
                      +..++...+++++++||+++.||+++|++|.+.+.+.......+
T Consensus       136 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~~~  179 (206)
T 2bcg_Y          136 AKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN  179 (206)
T ss_dssp             HHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999998876655544

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.7e-26  Score=166.45  Aligned_cols=122  Identities=45%  Similarity=0.804  Sum_probs=103.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|||||+++..+|..+..|+..+......++|++||+||+|+.+.+.+..++
T Consensus        63 ~~~i~D--t~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~  140 (223)
T 3cpj_B           63 KAQIWD--TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEE  140 (223)
T ss_dssp             EEEEEC--CTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHH
T ss_pred             EEEEEE--CCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH
Confidence            556666  999999999999999999999999999999999999999999988765679999999999998767788889


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  129 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~  129 (163)
                      +..++...+++++++||+++.||+++|++|.+.+.+...+....
T Consensus       141 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~  184 (223)
T 3cpj_B          141 SKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD  184 (223)
T ss_dssp             HHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC------
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcccC
Confidence            99999999999999999999999999999999998776665543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.93  E-value=5.1e-25  Score=158.23  Aligned_cols=120  Identities=32%  Similarity=0.488  Sum_probs=107.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+.|||  |||+++|..++..+++++|++|+|||+++..+|..+..|+..+..... .+.|++||+||+|+.+.+.+..+
T Consensus        63 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  140 (206)
T 2bov_A           63 QIDILD--TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE  140 (206)
T ss_dssp             EEEEEE--CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEc--CCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHH
Confidence            456666  999999999999999999999999999999999999999999987653 47999999999999877778889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ++..++..++++++++||+++.||+++|++|++.+.++..+..
T Consensus       141 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~  183 (206)
T 2bov_A          141 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS  183 (206)
T ss_dssp             HHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcccccc
Confidence            9999999999999999999999999999999999988754443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.92  E-value=2.3e-24  Score=152.26  Aligned_cols=121  Identities=42%  Similarity=0.797  Sum_probs=96.2

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |||+++|..++..+++++|++|+|||++++.+|..+..|+..+......+.|++||+||+|+.+.+.+..+
T Consensus        57 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  134 (183)
T 2fu5_C           57 IKLQIWD--TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE  134 (183)
T ss_dssp             EEEEEEE--C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHH
T ss_pred             EEEEEEc--CCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHH
Confidence            3566666  99999999999999999999999999999999999999999998876567999999999999877778889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ++..+++..+++++++||+++.||+++|.+|.+.+.+...+..
T Consensus       135 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~~  177 (183)
T 2fu5_C          135 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW  177 (183)
T ss_dssp             HHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999988776554

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.92  E-value=4e-24  Score=152.46  Aligned_cols=121  Identities=45%  Similarity=0.807  Sum_probs=108.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||++++..++..+++++|++|+|||+++..+|..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        66 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  143 (196)
T 3tkl_A           66 KLQIWD--TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT  143 (196)
T ss_dssp             EEEEEE--ECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred             EEEEEE--CCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHH
Confidence            466666  999999999999999999999999999999999999999999988876779999999999998888888899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  128 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~  128 (163)
                      +..++..++++++++||+++.||+++|++|.+.+.++......
T Consensus       144 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~~  186 (196)
T 3tkl_A          144 AKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGAT  186 (196)
T ss_dssp             HHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999887665443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.92  E-value=4.8e-24  Score=153.39  Aligned_cols=119  Identities=35%  Similarity=0.608  Sum_probs=103.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+.|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+.....    .+.|+++|+||+|+. .+.+
T Consensus        58 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~  134 (207)
T 1vg8_A           58 TMQIWD--TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQV  134 (207)
T ss_dssp             EEEEEE--ECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCS
T ss_pred             EEEEEe--CCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-cccc
Confidence            556666  999999999999999999999999999999999999999998876543    368999999999997 4567


Q ss_pred             CHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           82 SKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ..+++..++. ..+++++++||+++.|++++|++|.+.+.+......
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~  181 (207)
T 1vg8_A          135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE  181 (207)
T ss_dssp             CHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhccccc
Confidence            7788888887 667889999999999999999999999988765543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.92  E-value=6.4e-24  Score=152.91  Aligned_cols=117  Identities=43%  Similarity=0.740  Sum_probs=106.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||+++..+|+.+..|+..+......+.|++||+||+|+.+.+.+..++
T Consensus        79 ~l~i~D--t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~  156 (201)
T 2hup_A           79 KLQIWD--TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAE  156 (201)
T ss_dssp             EEEEEC--CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEE--CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHH
Confidence            556666  999999999999999999999999999999999999999999988766679999999999998767788899


Q ss_pred             HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           86 GEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        86 ~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      +..++...++ +++++||+++.||+++|++|.+.+.+...
T Consensus       157 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          157 AQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999 89999999999999999999999876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.92  E-value=1.2e-23  Score=149.98  Aligned_cols=118  Identities=72%  Similarity=1.109  Sum_probs=108.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        71 ~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~  148 (191)
T 2a5j_A           71 KLQIWD--TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREE  148 (191)
T ss_dssp             EEEEEC--CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEE--CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHH
Confidence            556666  999999999999999999999999999999999999999999988766679999999999998777788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      +..++...+++++++||+++.||+++|++|.+.+.++..+
T Consensus       149 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          149 GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999887654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.6e-23  Score=150.67  Aligned_cols=122  Identities=60%  Similarity=0.927  Sum_probs=110.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+...+
T Consensus        75 ~l~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~  152 (200)
T 2o52_A           75 KLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE  152 (200)
T ss_dssp             EEEEEC--CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEEc--CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHH
Confidence            556666  999999999999999999999999999999999999999999988766779999999999997767788889


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  129 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~  129 (163)
                      +..++...+++++++||+++.||+++|++|++.+.++..+....
T Consensus       153 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~~  196 (200)
T 2o52_A          153 ASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD  196 (200)
T ss_dssp             HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999887665543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=8.6e-24  Score=152.57  Aligned_cols=118  Identities=42%  Similarity=0.747  Sum_probs=106.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|+.+..|+..+......+.|+++|+||+|+.+.+++..++
T Consensus        76 ~l~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~  153 (201)
T 2ew1_A           76 KLQIWD--TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQR  153 (201)
T ss_dssp             EEEEEE--ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHH
T ss_pred             EEEEEE--CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence            455666  999999999999999999999999999999999999999999988766679999999999998777788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      +..++...+++++++||+++.||+++|++|.+.+.+....
T Consensus       154 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~  193 (201)
T 2ew1_A          154 AEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999876543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=8.7e-24  Score=150.70  Aligned_cols=118  Identities=39%  Similarity=0.715  Sum_probs=107.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |+|+++|..++..+++++|++|+|||+++..+|+.+..|+..+......+.|++||+||+|+.+.+.+..+
T Consensus        72 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~  149 (191)
T 3dz8_A           72 VKLQIWD--TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTE  149 (191)
T ss_dssp             EEEEEEC--HHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEEe--CCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence            3466666  99999999999999999999999999999999999999999998877677999999999999877788899


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      ++..++...+++++++||+++.||+++|++|++.+.+...
T Consensus       150 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          150 KGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.91  E-value=1.7e-23  Score=148.08  Aligned_cols=123  Identities=59%  Similarity=0.904  Sum_probs=110.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        60 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  137 (186)
T 2bme_A           60 KLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLE  137 (186)
T ss_dssp             EEEEEE--ECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEEe--CCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence            566776  999999999999999999999999999999999999999999987766779999999999997767788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA  130 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~  130 (163)
                      +..++...+++++++||+++.|++++|+++.+.+.+...+....+
T Consensus       138 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~  182 (186)
T 2bme_A          138 ASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDP  182 (186)
T ss_dssp             HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC---
T ss_pred             HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCc
Confidence            999999999999999999999999999999999998877665443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.91  E-value=2.3e-23  Score=144.73  Aligned_cols=115  Identities=26%  Similarity=0.330  Sum_probs=88.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+++||  |+|+++|..++..+++.+|++++|||++++.+|..+..|+..+.... ..++|+++|+||+|+.+.+.+..+
T Consensus        50 ~~~i~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  127 (166)
T 3q72_A           50 SLMVYD--IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVD  127 (166)
T ss_dssp             EEEEEE--CC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHH
T ss_pred             EEEEEE--CCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHH
Confidence            345555  99999999999999999999999999999999999999999997753 257999999999999888889999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ++..++...+++++++||+++.|++++|+++.+.+.++
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          128 EGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.91  E-value=2.7e-23  Score=147.84  Aligned_cols=118  Identities=39%  Similarity=0.723  Sum_probs=107.2

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.|||  |+|+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..+
T Consensus        71 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~  148 (189)
T 2gf9_A           71 IKLQIWD--TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE  148 (189)
T ss_dssp             EEEEEEE--CCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEEe--CCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHH
Confidence            3566666  99999999999999999999999999999999999999999998876567999999999999877778888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      ++..+++.++++++++||+++.|++++|++|.+.+.++.+
T Consensus       149 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  188 (189)
T 2gf9_A          149 DGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN  188 (189)
T ss_dssp             HHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999887653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.91  E-value=3.8e-23  Score=148.49  Aligned_cols=120  Identities=40%  Similarity=0.712  Sum_probs=109.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |||+++|..++..+++++|++|+|||+++..+|..+..|+..+......+.|+++|+||+|+.+.+.+..+
T Consensus        57 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~  134 (203)
T 1zbd_A           57 IKLQIWD--TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE  134 (203)
T ss_dssp             EEEEEEE--ECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHH
T ss_pred             EEEEEEE--CCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHH
Confidence            3566676  99999999999999999999999999999999999999999998876567999999999999887788889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      ++..+++.++++++++||+++.||+++|++|.+.+.+...+.
T Consensus       135 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          135 RGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999998876654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.1e-23  Score=151.90  Aligned_cols=121  Identities=26%  Similarity=0.286  Sum_probs=103.3

Q ss_pred             ccceeeEeeecccchhh-hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCc
Q 031249            3 FSQESFFWSLLQAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~-~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~   80 (163)
                      ++..+++..|||+|++. +..+...|++.+|++|+|||+++..+|+.+..|+..+.+.. ..++|++||+||+|+.+.+.
T Consensus        83 ~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~  162 (211)
T 2g3y_A           83 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE  162 (211)
T ss_dssp             TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC
T ss_pred             CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCce
Confidence            34555555566999887 56677889999999999999999999999999998887542 24699999999999977677


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +..+++..++..++++++++||+++.||+++|++|++.+....
T Consensus       163 v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          163 VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            8888888899999999999999999999999999999886544

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.91  E-value=5.6e-23  Score=144.35  Aligned_cols=120  Identities=37%  Similarity=0.656  Sum_probs=108.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.|||  |||++++..++..+++++|++|+|||++++.++..+..|+..+.... ++.|+++|+||+|+.+.+.+..+
T Consensus        58 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~  134 (181)
T 3tw8_B           58 VKLQIWD--TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETE  134 (181)
T ss_dssp             EEEEEEE--ETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEEc--CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHH
Confidence            3466666  99999999999999999999999999999999999999999998765 57999999999999887788889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ++..++...+++++++||+++.|++++|++|.+.+.+...+..
T Consensus       135 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          135 DAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999988766554

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.91  E-value=3.5e-23  Score=145.68  Aligned_cols=115  Identities=41%  Similarity=0.773  Sum_probs=104.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|..+..|+..+.....++.|+++|+||+|+.+.+.+..++
T Consensus        62 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~  139 (181)
T 2efe_B           62 KFEIWD--TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAED  139 (181)
T ss_dssp             EEEEEE--CCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred             EEEEEe--CCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHH
Confidence            566666  999999999999999999999999999999999999999999988766679999999999998777788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +..+++..+++++++||+++.|++++|++|.+.+.+.
T Consensus       140 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          140 AQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999998876544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.90  E-value=3.6e-23  Score=145.12  Aligned_cols=114  Identities=66%  Similarity=1.045  Sum_probs=104.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        65 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  142 (179)
T 1z0f_A           65 KLQIWD--TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEE  142 (179)
T ss_dssp             EEEEEE--CTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEE--CCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence            556666  999999999999999999999999999999999999999999988776789999999999997777788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +..+++.++++++++||+++.|++++|++|.+.+.+
T Consensus       143 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          143 AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999987754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=4.1e-23  Score=145.19  Aligned_cols=115  Identities=43%  Similarity=0.790  Sum_probs=96.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        61 ~~~~~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~  138 (180)
T 2g6b_A           61 KLQMWD--TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKRED  138 (180)
T ss_dssp             EEEEEE--CCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHH
T ss_pred             EEEEEe--CCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHH
Confidence            556666  999999999999999999999999999999999999999999988766679999999999998877788889


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +..+++..+++++++||+++.|++++|+++.+.+.++
T Consensus       139 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          139 GEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.90  E-value=5.9e-23  Score=142.87  Aligned_cols=114  Identities=45%  Similarity=0.808  Sum_probs=103.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+ ..+.+..++
T Consensus        53 ~~~l~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~  129 (170)
T 1g16_A           53 KLQIWD--TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQ  129 (170)
T ss_dssp             EEEEEC--CTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHH
T ss_pred             EEEEEe--CCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHH
Confidence            455555  99999999999999999999999999999999999999999998877667999999999999 445677888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +..+++..+++++++||+++.|++++|++|.+.+.++
T Consensus       130 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          130 GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=8.7e-23  Score=147.36  Aligned_cols=119  Identities=43%  Similarity=0.789  Sum_probs=106.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|..+..|+..+......+.|+++|+||+|+ ..+.+..++
T Consensus        70 ~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~  146 (213)
T 3cph_A           70 KLQLWD--TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQ  146 (213)
T ss_dssp             EEEEEC--CTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHH
T ss_pred             EEEEEe--CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHH
Confidence            455666  99999999999999999999999999999999999999999998876567999999999999 446677888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      +..++..++++++++||+++.||+++|++|.+.+.+......
T Consensus       147 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  188 (213)
T 3cph_A          147 GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK  188 (213)
T ss_dssp             HHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence            899999999999999999999999999999999888765444

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.90  E-value=3.9e-23  Score=148.27  Aligned_cols=118  Identities=26%  Similarity=0.316  Sum_probs=102.8

Q ss_pred             cceeeEeeecccchhhhhh-chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            4 SQESFFWSLLQAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~-~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      +..+.+..|||+|++++.. ++..+++++|++|+|||+++..+|..+..|+..+..... .+.|++||+||+|+.+.+.+
T Consensus        69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v  148 (195)
T 3cbq_A           69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV  148 (195)
T ss_dssp             TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCS
T ss_pred             CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCc
Confidence            3344444444999998875 888899999999999999999999999999999987653 46999999999999877788


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..+++..++...+++++++||+++.||+++|+++++.+.+
T Consensus       149 ~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          149 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             CHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999988754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.90  E-value=5.2e-24  Score=154.07  Aligned_cols=117  Identities=30%  Similarity=0.591  Sum_probs=98.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCc----
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA----   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~----   80 (163)
                      .++|||  |||+++|..++..+++++|++|+|||++++.+|..+. .|+..+.... ++.|++||+||+|+.+.+.    
T Consensus        58 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  134 (212)
T 2j0v_A           58 NLGLWD--TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLAD  134 (212)
T ss_dssp             EEEEEC--CCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHT
T ss_pred             EEEEEE--CCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCcccccc
Confidence            556666  9999999999999999999999999999999999987 7999998765 4799999999999865433    


Q ss_pred             ----cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           81 ----VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        81 ----v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                          +..+++..++..++. +++++||+++.||+++|++|++.+.+...+
T Consensus       135 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          135 HTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             CSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred             ccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence                377888899999996 899999999999999999999988765433

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.90  E-value=2.5e-23  Score=144.97  Aligned_cols=113  Identities=34%  Similarity=0.674  Sum_probs=96.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        56 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  133 (170)
T 1z08_A           56 NLAIWD--TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE  133 (170)
T ss_dssp             EEEEEE--CCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEEE--CCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHH
Confidence            455555  999999999999999999999999999999999999999999877655579999999999998777788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +..+++..+++++++||+++.|++++|++|.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          134 AESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             HHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.90  E-value=5.4e-23  Score=145.20  Aligned_cols=113  Identities=29%  Similarity=0.520  Sum_probs=103.0

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      ++|||  |+|+++|..++..+++++|++|+|||+++..+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++
T Consensus        68 l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~  145 (183)
T 3kkq_A           68 LDVLD--TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQ  145 (183)
T ss_dssp             EEEEE--CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHH
T ss_pred             EEEEE--CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHH
Confidence            44566  99999999999999999999999999999999999999999986643 3578999999999998878899999


Q ss_pred             HHHHHHHcCCeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASAR-TAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~-~~~~i~~lf~~l~~~~~~  121 (163)
                      +..+++.++++++++||+ ++.||+++|++|.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          146 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999 999999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.90  E-value=3.6e-23  Score=144.13  Aligned_cols=119  Identities=26%  Similarity=0.317  Sum_probs=98.8

Q ss_pred             cceeeEeeecccchhhhhh-chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            4 SQESFFWSLLQAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~-~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      +..+.+..|||+|++++.. ++..+++++|++++|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.+.+
T Consensus        48 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  127 (169)
T 3q85_A           48 KEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV  127 (169)
T ss_dssp             TEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCS
T ss_pred             CeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccC
Confidence            3344444444999999987 788889999999999999999999999999999987654 47999999999999877889


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ..+++..+++..+++++++||+++.|++++|+++++.+..+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          128 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             CHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999987653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.90  E-value=1.1e-22  Score=144.23  Aligned_cols=120  Identities=33%  Similarity=0.624  Sum_probs=108.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..++|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+.+.+.+..
T Consensus        70 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  147 (195)
T 3bc1_A           70 IHLQLWD--TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE  147 (195)
T ss_dssp             EEEEEEE--ECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH
T ss_pred             EEEEEEe--CCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence            3566666  999999999999999999999999999999999999999999987664 5789999999999977677888


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      +++..++...+++++++||+++.|++++|++|.+.+.++....
T Consensus       148 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          148 EEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             HHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999998776543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.90  E-value=2.8e-23  Score=146.46  Aligned_cols=116  Identities=28%  Similarity=0.380  Sum_probs=103.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |||+++|..++..+++++|++++|||+++..+|+.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+
T Consensus        55 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  132 (181)
T 3t5g_A           55 HLQLVD--TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE  132 (181)
T ss_dssp             EEEEEE--CCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHH
T ss_pred             EEEEEe--CCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHH
Confidence            445666  999999999999999999999999999999999999999999876643 46899999999999888889999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ++..+++.++++++++||+++.|++++|++|++.+.+..
T Consensus       133 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          133 EGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.90  E-value=1.1e-22  Score=142.31  Aligned_cols=118  Identities=29%  Similarity=0.333  Sum_probs=97.0

Q ss_pred             eeeEeeecccchhh--hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            6 ESFFWSLLQAGQES--FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~--~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .+++||  |+|+++  +..++..+++.+|++++|||+++..+|..+..|+..+.... ..+.|+++|+||+|+.+.+++.
T Consensus        53 ~~~~~D--~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~  130 (175)
T 2nzj_A           53 TLVVVD--TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVS  130 (175)
T ss_dssp             EEEEEC--CC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSC
T ss_pred             EEEEEe--cCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccC
Confidence            455666  999988  66778889999999999999999999999999999887753 2468999999999998777888


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      .+++..++..++++++++||+++.||+++|++|.+.+.++...
T Consensus       131 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  173 (175)
T 2nzj_A          131 VEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcc
Confidence            8888899999999999999999999999999999988765443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.90  E-value=5.7e-23  Score=146.47  Aligned_cols=118  Identities=45%  Similarity=0.796  Sum_probs=106.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||+++|..++..+++++|++|||||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        75 ~~~i~D--t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~  152 (193)
T 2oil_A           75 KAQIWD--TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEE  152 (193)
T ss_dssp             EEEEEE--ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEEe--CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHH
Confidence            455666  999999999999999999999999999999999999999999987665679999999999997767788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      +..++...+++++++||+++.|++++|++|.+.+.++..+
T Consensus       153 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  192 (193)
T 2oil_A          153 ARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK  192 (193)
T ss_dssp             HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999876543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.90  E-value=1.7e-22  Score=142.98  Aligned_cols=119  Identities=29%  Similarity=0.543  Sum_probs=103.3

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      ++|||  |||++++..++..+++++|++++|||+++..+|..+..|+..+..... .+.|+++|+||+|+.+ +.+..++
T Consensus        54 ~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~  130 (189)
T 4dsu_A           54 LDILD--TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQ  130 (189)
T ss_dssp             EEEEE--CCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHH
T ss_pred             EEEEE--CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHH
Confidence            45566  999999999999999999999999999999999999999999977543 5799999999999974 5677889


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  128 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~  128 (163)
                      +..++..++++++++||+++.|++++|++|.+.+.+...+...
T Consensus       131 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~  173 (189)
T 4dsu_A          131 AQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSK  173 (189)
T ss_dssp             HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhccc
Confidence            9999999999999999999999999999999999887766543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.90  E-value=6.4e-23  Score=147.32  Aligned_cols=121  Identities=26%  Similarity=0.490  Sum_probs=98.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCC-CCc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAH-RRA   80 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~-~~~   80 (163)
                      ..++|||  |||+++|..++..+++++|++|+|||+++..+|..+..|+..+.....   .+.|+++|+||+|+.+ .+.
T Consensus        73 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~  150 (208)
T 2yc2_C           73 VELFLLD--TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ  150 (208)
T ss_dssp             EEEEEEE--TTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C
T ss_pred             EEEEEEE--CCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhcc
Confidence            3566676  999999999999999999999999999999999999999999988765   5799999999999987 677


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHHHHhhcc
Q 031249           81 VSKEEGEQFAKENGLLFLEASART-AQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      +..+++..+++.++++++++||++ +.|++++|++|.+.+.+...+..
T Consensus       151 v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~~~  198 (208)
T 2yc2_C          151 VRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKV  198 (208)
T ss_dssp             CCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHhhH
Confidence            888999999999999999999999 99999999999999987766544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=149.53  Aligned_cols=119  Identities=29%  Similarity=0.443  Sum_probs=103.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|..+..|+..+..... .++|++||+||+|+.+.+.+...
T Consensus        73 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~  150 (201)
T 3oes_A           73 HLHLVD--TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV  150 (201)
T ss_dssp             EEEEEE--ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEE--CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH
Confidence            445666  999999999999999999999999999999999999999999976533 46899999999999887888999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      ++..++..++++++++||+++.||+++|++|.+.+.+.....
T Consensus       151 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~~  192 (201)
T 3oes_A          151 EGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSY  192 (201)
T ss_dssp             HHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999987765443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.90  E-value=4e-23  Score=150.23  Aligned_cols=116  Identities=28%  Similarity=0.505  Sum_probs=102.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||+++..+|.. +..|+..+.... ++.|++||+||+|+.++      
T Consensus        76 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~  152 (214)
T 3q3j_B           76 ELSLWD--TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLME  152 (214)
T ss_dssp             EEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHH
T ss_pred             EEEEEE--CCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhh
Confidence            456666  99999999999999999999999999999999998 688999998875 57999999999999653      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHHHHHHh
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQN-VEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~lf~~l~~~~~~~~~  124 (163)
                            +.+..+++..+++.+++ +++++||+++.| |+++|+++++.+.....
T Consensus       153 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          153 LSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             HHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             hcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence                  66889999999999999 899999999998 99999999998876544

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.90  E-value=7.4e-23  Score=142.25  Aligned_cols=113  Identities=44%  Similarity=0.793  Sum_probs=102.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+.....++.|+++|+||+|+.+.+.+..+
T Consensus        55 ~~~~~~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~  132 (170)
T 1r2q_A           55 VKFEIWD--TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ  132 (170)
T ss_dssp             EEEEEEE--ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEEe--CCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHH
Confidence            3566676  99999999999999999999999999999999999999999998876678999999999999776778888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++..++...+++++++||+++.|++++|++|.+.+
T Consensus       133 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.90  E-value=5.8e-23  Score=149.06  Aligned_cols=121  Identities=34%  Similarity=0.636  Sum_probs=107.6

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..++|||  |+|+++|..++..+++++|++|||||+++..++..+..|+..+..... .++|++||+||+|+.+.+.+..
T Consensus        84 ~~l~l~D--t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~  161 (217)
T 2f7s_A           84 VHLQLWD--TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE  161 (217)
T ss_dssp             EEEEEEE--EESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH
T ss_pred             EEEEEEE--CCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCH
Confidence            4566676  999999999999999999999999999999999999999988865543 5689999999999987777888


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      +++..++...+++++++||+++.||+++|++|.+.+.++.....
T Consensus       162 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~  205 (217)
T 2f7s_A          162 RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV  205 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999988765433

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.90  E-value=5.5e-23  Score=146.83  Aligned_cols=115  Identities=43%  Similarity=0.775  Sum_probs=103.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+++..++
T Consensus        76 ~l~l~D--t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~  153 (192)
T 2il1_A           76 RLQIWD--TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQ  153 (192)
T ss_dssp             EEEEEE--ECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEEe--CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence            456666  999999999999999999999999999999999999999999988766679999999999998777788888


Q ss_pred             HHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           86 GEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        86 ~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +..+++.. +++++++||+++.||+++|++|.+.+.++
T Consensus       154 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          154 GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            98898874 78899999999999999999999988653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.3e-23  Score=148.83  Aligned_cols=112  Identities=26%  Similarity=0.378  Sum_probs=98.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCCCCccCH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      .+.|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+.....  ++.|+++|+||+|+.+ +.+..
T Consensus        57 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~  133 (199)
T 2gf0_A           57 TLQITD--TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDT  133 (199)
T ss_dssp             EEEEEE--CCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCH
T ss_pred             EEEEEe--CCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCH
Confidence            456666  999999999999999999999999999999999999888888866543  3689999999999965 56778


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +++..++..++++++++||+++.||+++|++|.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          134 REAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             HHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            8888899999999999999999999999999987653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.89  E-value=1.2e-22  Score=142.59  Aligned_cols=117  Identities=30%  Similarity=0.505  Sum_probs=104.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+.|||  |+|+++|..++..+++++|++++|||+++..++..+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+
T Consensus        58 ~~~~~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~  135 (181)
T 2fn4_A           58 RLDILD--TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRS  135 (181)
T ss_dssp             EEEEEE--CCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEE--CCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence            455666  99999999999999999999999999999999999999999985443 357899999999999877778889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      ++..++...+++++++||+++.|++++|++|.+.+.+...
T Consensus       136 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          136 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999876554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.89  E-value=2.2e-22  Score=139.95  Aligned_cols=113  Identities=40%  Similarity=0.807  Sum_probs=103.2

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.|||  |||++++..++..+++++|++|+|||+++..++..+..|+..+.....+..|+++|+||+|+.+.+++..+
T Consensus        55 ~~~~~~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~  132 (170)
T 1z0j_A           55 HKFLIWD--TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER  132 (170)
T ss_dssp             EEEEEEE--ECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEEc--CCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHH
Confidence            3566666  99999999999999999999999999999999999999999998876678999999999999877778888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ++..++...+++++++||+++.|++++|++|.+.+
T Consensus       133 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          133 DAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             HHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999998765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.89  E-value=1.5e-22  Score=142.83  Aligned_cols=118  Identities=32%  Similarity=0.493  Sum_probs=106.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+.|||  |||+++|..++..+++.+|++|+|||+++..++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus        67 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  144 (187)
T 2a9k_A           67 QIDILD--TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE  144 (187)
T ss_dssp             EEEEEE--CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEE--CCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHH
Confidence            456666  999999999999999999999999999999999999999999987664 47999999999999776778889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      ++..+++.++++++++||+++.||+++|++|.+.+.++..+
T Consensus       145 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  185 (187)
T 2a9k_A          145 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME  185 (187)
T ss_dssp             HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999998876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.89  E-value=9.1e-23  Score=141.37  Aligned_cols=114  Identities=32%  Similarity=0.506  Sum_probs=100.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+.|||  |||++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+.+++..+
T Consensus        53 ~~~l~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  130 (168)
T 1u8z_A           53 QIDILD--TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE  130 (168)
T ss_dssp             EEEEEE--CCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEE--CCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHH
Confidence            456666  999999999999999999999999999999999999999999987654 47999999999999877778889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ++..+++.++++++++||+++.|++++|+++.+.+.+
T Consensus       131 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          131 EAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999988753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=8.1e-23  Score=145.87  Aligned_cols=115  Identities=37%  Similarity=0.739  Sum_probs=103.9

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..+
T Consensus        72 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~  149 (192)
T 2fg5_A           72 HKFLIWD--TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK  149 (192)
T ss_dssp             EEEEEEE--ECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEEc--CCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence            3566666  99999999999999999999999999999999999999999998876667999999999999776778889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ++..+++..+++++++||+++.||+++|++|.+.+.+
T Consensus       150 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          150 DAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999887643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.89  E-value=6.1e-23  Score=144.07  Aligned_cols=115  Identities=36%  Similarity=0.529  Sum_probs=101.2

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCe-EEEEeeCCCCCCCCcc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMS-IMLVGNKCDLAHRRAV   81 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~ilv~nK~D~~~~~~v   81 (163)
                      ..++|||  |||+++|..++..+++++|++|+|||++++.+++.+..|+..+.....  ...| +++|+||+|+.+.+.+
T Consensus        56 ~~~~~~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~  133 (178)
T 2hxs_A           56 VTLQIWD--IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI  133 (178)
T ss_dssp             EEEEEEE--CTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS
T ss_pred             EEEEEEE--CCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc
Confidence            4667777  999999999999999999999999999999999999999998876432  2345 8999999999776778


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..+++..+++..+++++++||+++.||+++|++|.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          134 KPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999987754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.89  E-value=2.8e-22  Score=143.07  Aligned_cols=113  Identities=27%  Similarity=0.531  Sum_probs=100.7

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC--CccCH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVSK   83 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~--~~v~~   83 (163)
                      ++|||  |||+++|..++..+++++|++|+|||+++..+|..+ ..|+..+.... ++.|++||+||+|+.+.  +.+..
T Consensus        73 ~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~  149 (194)
T 3reg_A           73 LHLWD--TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTK  149 (194)
T ss_dssp             EEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCH
T ss_pred             EEEEE--CCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccH
Confidence            46666  999999999999999999999999999999999997 66888887654 56999999999998753  66888


Q ss_pred             HHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +++..+++.+++. ++++||+++.||+++|++|++.+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          150 QEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999998 99999999999999999999887643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.89  E-value=2.5e-22  Score=143.98  Aligned_cols=116  Identities=27%  Similarity=0.457  Sum_probs=102.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~-------   77 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... ++.|++||+||+|+.+       
T Consensus        69 ~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~  145 (201)
T 2q3h_A           69 RLQLCD--TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIE  145 (201)
T ss_dssp             EEEEEE--CCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHH
T ss_pred             EEEEEE--CCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhh
Confidence            455676  9999999999999999999999999999999999987 6999888765 4799999999999865       


Q ss_pred             -----CCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           78 -----RRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        78 -----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                           .+.+..+++..++..++. +++++||+++.||+++|++|++.+.+...
T Consensus       146 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          146 LDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             HHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             hcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence                 256778889999999887 89999999999999999999999887654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.89  E-value=9.5e-23  Score=145.09  Aligned_cols=115  Identities=21%  Similarity=0.283  Sum_probs=99.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECC------ChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR   79 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~   79 (163)
                      .++|||  |||+++|..++..+++++|++|+|||++      +..+|..+..|+..+.. ...+.|++||+||+|+.+  
T Consensus        75 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--  149 (198)
T 3t1o_A           75 RFHLYT--VPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--  149 (198)
T ss_dssp             EEEEEE--CCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--
T ss_pred             EEEEEe--CCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--
Confidence            456666  9999999999999999999999999999      56778888888888733 236799999999999965  


Q ss_pred             ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           80 AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        80 ~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      .+..+++..++...++ +++++||+++.||+++|++|.+.+.++..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          150 ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            4788999999999999 899999999999999999999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.89  E-value=2.5e-22  Score=142.77  Aligned_cols=112  Identities=14%  Similarity=0.298  Sum_probs=98.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC--CCCccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~--~~~~v~   82 (163)
                      .++|||  |+|+++|.     +++++|++++|||+++..+|+.+..|+..+..... .+.|++||+||+|+.  ..+.+.
T Consensus        68 ~l~i~D--t~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~  140 (184)
T 3ihw_A           68 LLLIRD--EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVID  140 (184)
T ss_dssp             EEEEEE--CSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSC
T ss_pred             EEEEEE--CCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccC
Confidence            445566  99999887     88899999999999999999999999999987653 468999999999984  456788


Q ss_pred             HHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           83 KEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      .+++..++..++ ++++++||+++.||+++|+++++.+.+...
T Consensus       141 ~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          141 DSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence            999999999987 889999999999999999999999887643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=5e-22  Score=141.66  Aligned_cols=112  Identities=25%  Similarity=0.493  Sum_probs=99.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.+|..+. .|+..+.... ++.|+++|+||+|+.+.      
T Consensus        67 ~~~i~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  143 (194)
T 2atx_A           67 LLGLYD--TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLAR  143 (194)
T ss_dssp             EEEEEC--CCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHH
T ss_pred             EEEEEE--CCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhh
Confidence            456666  9999999999999999999999999999999999987 7999988765 46899999999999653      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                            +.+..+++..+++.+++ +++++||+++.||+++|++|.+.++
T Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          144 LNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence                  46788899999999998 8999999999999999999998775

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=1.8e-22  Score=140.31  Aligned_cols=112  Identities=43%  Similarity=0.776  Sum_probs=101.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC---CccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---RAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~---~~v~   82 (163)
                      .++|||  |||++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.   +++.
T Consensus        53 ~~~~~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  130 (170)
T 1ek0_A           53 KFEIWD--TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVA  130 (170)
T ss_dssp             EEEEEE--ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSC
T ss_pred             EEEEEE--CCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCC
Confidence            566676  99999999999999999999999999999999999999999998876677999999999998654   6678


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+++..++...+++++++||+++.|++++|++|.+.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          131 REEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            8889999999999999999999999999999997654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.89  E-value=7.2e-23  Score=145.76  Aligned_cols=113  Identities=31%  Similarity=0.436  Sum_probs=97.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .++|||  |+|+++|..+ ..+++++|++|+|||+++..+|..+..|+..+.....   .+.|++||+||+|+.+.+.+.
T Consensus        70 ~l~i~D--t~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~  146 (187)
T 3c5c_A           70 HLRVMD--TADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT  146 (187)
T ss_dssp             EEEEEE--CCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC
T ss_pred             EEEEEE--CCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccC
Confidence            456666  9999999885 6799999999999999999999999999999877632   468999999999997777888


Q ss_pred             HHHHHHHHHHcCCeEEEEcC-CCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASA-RTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~lf~~l~~~~~~  121 (163)
                      .+++..+++.++++++++|| +++.||+++|+++++.+.+
T Consensus       147 ~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          147 KAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence            99999999999999999999 8999999999999988753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.89  E-value=1.8e-22  Score=140.15  Aligned_cols=113  Identities=40%  Similarity=0.624  Sum_probs=102.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||++++..++..+++++|++++|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++
T Consensus        55 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~  131 (168)
T 1z2a_A           55 RLMLWD--TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEE  131 (168)
T ss_dssp             EEEEEC--CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHH
T ss_pred             EEEEEc--CCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHH
Confidence            456666  99999999999999999999999999999999999999999997765 568999999999998767788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +..+++..+++++++||+++.|++++|++|.+.+.+
T Consensus       132 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          132 AEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999987753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.89  E-value=1.3e-22  Score=142.30  Aligned_cols=113  Identities=44%  Similarity=0.734  Sum_probs=102.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||+++|..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus        64 ~~~~~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~  141 (179)
T 2y8e_A           64 RLQLWD--TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE  141 (179)
T ss_dssp             EEEEEE--ECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEEE--CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHH
Confidence            456666  999999999999999999999999999999999999999999987765679999999999998777788899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +..++...+++++++||+++.|++++|++|.+.+.
T Consensus       142 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          142 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             HHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999987653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.89  E-value=2.8e-22  Score=139.07  Aligned_cols=113  Identities=35%  Similarity=0.559  Sum_probs=101.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |||++++..++..+++++|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus        52 ~~~l~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  129 (167)
T 1c1y_A           52 MLEILD--TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE  129 (167)
T ss_dssp             EEEEEE--ECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEE--CCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHH
Confidence            456666  999999999999999999999999999999999999999999877543 57999999999999877778889


Q ss_pred             HHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           85 EGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        85 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ++..+++.+ +.+++++||+++.|++++|++|.+.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          130 QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence            999999887 789999999999999999999988763

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=146.14  Aligned_cols=113  Identities=39%  Similarity=0.674  Sum_probs=100.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC------CCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA------HRR   79 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~------~~~   79 (163)
                      .++|||  |||+++|..++..+++++|++|||||+++..++..+..|+..+......+.|++||+||+|+.      ..+
T Consensus        78 ~l~i~D--t~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~  155 (199)
T 2p5s_A           78 VLQLWD--TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQK  155 (199)
T ss_dssp             EEEEEE--CTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCC
T ss_pred             EEEEEE--CCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccccccc
Confidence            456666  999999999999999999999999999999999999999999987765679999999999985      346


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           80 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        80 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .+..+++..++...+++++++||+++.||+++|++|++.+.
T Consensus       156 ~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          156 CVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             CCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            67888899999999999999999999999999999998775

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.89  E-value=3.5e-22  Score=142.04  Aligned_cols=114  Identities=35%  Similarity=0.697  Sum_probs=99.8

Q ss_pred             eeeEeeecccchhhhh-hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccCH
Q 031249            6 ESFFWSLLQAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~-~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      .++|||  |||+++|. .++..+++++|++|||||+++..+|..+..|+..+.... ..+.|+++|+||+|+.+.+++..
T Consensus        70 ~~~l~D--t~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~  147 (189)
T 1z06_A           70 KIQLWD--TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT  147 (189)
T ss_dssp             EEEEEE--CCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH
T ss_pred             EEEEEE--CCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH
Confidence            566666  99999998 899999999999999999999999999999999998765 35799999999999977777888


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTA---QNVEEAFIKTAAKILQ  121 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~---~~i~~lf~~l~~~~~~  121 (163)
                      +++..++...+++++++||+++   .+|+++|++|.+.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          148 DLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence            9999999999999999999999   9999999999887643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.89  E-value=4.3e-22  Score=142.51  Aligned_cols=122  Identities=26%  Similarity=0.297  Sum_probs=101.6

Q ss_pred             ccceeeEeeecccchhh-hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCc
Q 031249            3 FSQESFFWSLLQAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~-~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~   80 (163)
                      ++..+++..|||+|++. +..++..|++.+|++++|||+++..+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.
T Consensus        52 ~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~  131 (192)
T 2cjw_A           52 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXRE  131 (192)
T ss_dssp             TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC
T ss_pred             CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccc
Confidence            34555555555999877 56688889999999999999999999999999998887653 25689999999999977677


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      +..+++..++..++++++++||++|.||+++|+++++.+.....
T Consensus       132 v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~~  175 (192)
T 2cjw_A          132 VSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRD  175 (192)
T ss_dssp             SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhcc
Confidence            88888888888899999999999999999999999998866543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.88  E-value=7.6e-22  Score=138.68  Aligned_cols=114  Identities=16%  Similarity=0.273  Sum_probs=96.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCC--CCCc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLA--HRRA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~--~~~~   80 (163)
                      .++|||  |+|+++     ..+++++|++|+|||++++.+|..+..|+..+.....   ++.|++||+||+|+.  ..+.
T Consensus        55 ~l~i~D--t~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~  127 (178)
T 2iwr_A           55 LVLIRE--EAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV  127 (178)
T ss_dssp             EEEEEE--CSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCC
T ss_pred             EEEEEE--CCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCc
Confidence            456666  999987     5688999999999999999999999998776655432   578999999999983  4567


Q ss_pred             cCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           81 VSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        81 v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      +..+++..++... +++++++||+++.||+++|+++++.+.+...+.
T Consensus       128 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          128 VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             SCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhhh
Confidence            8889999998876 688999999999999999999999998776543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.88  E-value=3.7e-22  Score=144.90  Aligned_cols=122  Identities=28%  Similarity=0.426  Sum_probs=105.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.|||  |+|++++..++..+++++|++|+|||+++..++..+..|+..+......+.|+++|+||+|+.+.+.+..+
T Consensus        61 ~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  138 (218)
T 4djt_A           61 IKFNVWD--TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKK  138 (218)
T ss_dssp             EEEEEEE--ECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHH
T ss_pred             EEEEEEe--cCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence            3466777  99999999999999999999999999999999999999999998877667999999999999877778888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  128 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~  128 (163)
                      ++..++...+++++++||+++.|++++|.+|.+.+.+.......
T Consensus       139 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~  182 (218)
T 4djt_A          139 LVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV  182 (218)
T ss_dssp             HHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBC
T ss_pred             HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccccc
Confidence            88899999999999999999999999999999988766544443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.88  E-value=2e-21  Score=138.63  Aligned_cols=114  Identities=36%  Similarity=0.631  Sum_probs=102.9

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.|||  |||+++|..++..+++.+|++|+|||++++.++..+..|+..+.....  .|+++|+||+| ...+.+..+
T Consensus        93 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~~~  167 (208)
T 3clv_A           93 IKFDIWD--TAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVDIL  167 (208)
T ss_dssp             EEEEEEE--CTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSCHH
T ss_pred             eEEEEEE--CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCCHH
Confidence            5667777  999999999999999999999999999999999999999999987653  89999999999 455678889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ++..++...+++++++||+++.|++++|++|.+.+.++.
T Consensus       168 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          168 EVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             HHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999887654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.88  E-value=9.3e-22  Score=137.87  Aligned_cols=113  Identities=32%  Similarity=0.639  Sum_probs=100.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .++|||  |||++++..++..+++++|++++|||+++..++..+..|+..+.....    .+.|+++|+||+|+. .+.+
T Consensus        57 ~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~  133 (177)
T 1wms_A           57 TMQIWD--TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQV  133 (177)
T ss_dssp             EEEEEE--CCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSS
T ss_pred             EEEEEe--CCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-cccc
Confidence            566666  999999999999999999999999999999999999999999877653    568999999999997 4567


Q ss_pred             CHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..+++..++. ..+++++++||+++.|++++|+++.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          134 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             CHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            8888888888 567889999999999999999999988864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=6.5e-22  Score=140.69  Aligned_cols=115  Identities=46%  Similarity=0.802  Sum_probs=102.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..+.|||  |||+++|..++..+++++|++|||||+++..++..+..|+..+..... .+.|+++|+||+|+.+ +.+..
T Consensus        64 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~  140 (195)
T 1x3s_A           64 AKLAIWD--TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDR  140 (195)
T ss_dssp             EEEEEEE--ECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCH
T ss_pred             EEEEEEe--CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCH
Confidence            3456666  999999999999999999999999999999999999999999876543 4689999999999954 56778


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +++..++...+++++++||+++.||+++|++|.+.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          141 NEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            889999999999999999999999999999999988753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.88  E-value=9.2e-22  Score=138.22  Aligned_cols=116  Identities=34%  Similarity=0.603  Sum_probs=91.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCC-CCc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAH-RRA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~-~~~   80 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..++..+..|+..+.....    .+.|+++|+||+|+.+ .+.
T Consensus        59 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  136 (182)
T 1ky3_A           59 TMQVWD--TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI  136 (182)
T ss_dssp             EEEEEC--CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC
T ss_pred             EEEEEE--CCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc
Confidence            566676  999999999999999999999999999999999999999999877653    5689999999999854 345


Q ss_pred             cCHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        81 v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +..+++..++. ..+.+++++||+++.||+++|++|.+.+.++.
T Consensus       137 v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          137 VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            67888888887 56788999999999999999999999887654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.88  E-value=3.2e-22  Score=138.51  Aligned_cols=114  Identities=29%  Similarity=0.483  Sum_probs=102.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |||++++..++..+++++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+.+++..+
T Consensus        52 ~~~l~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  129 (167)
T 1kao_A           52 VLEILD--TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS  129 (167)
T ss_dssp             EEEEEE--CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEE--CCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHH
Confidence            366676  999999999999999999999999999999999999999998877643 57999999999999777778888


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ++..++...+++++++||+++.|++++|++|.+.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          130 EGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999987753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.88  E-value=4.2e-22  Score=141.14  Aligned_cols=113  Identities=27%  Similarity=0.531  Sum_probs=99.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |||+++|..++..+++++|++|+|||++++.+|..+ ..|+..+.... ++.|+++|+||+|+.++      
T Consensus        56 ~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~  132 (184)
T 1m7b_A           56 ELSLWD--TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVE  132 (184)
T ss_dssp             EEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHH
T ss_pred             EEEEEE--CCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhh
Confidence            456666  999999999999999999999999999999999998 67988887765 57899999999998642      


Q ss_pred             ------CccCHHHHHHHHHHcC-CeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENG-LLFLEASAR-TAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~lf~~l~~~~~~  121 (163)
                            +.+..+++..+++.++ .+++++||+ ++.||+++|+++.+.+++
T Consensus       133 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          133 LSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             HHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence                  5678889999999887 689999999 689999999999988763

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.88  E-value=1.8e-21  Score=139.89  Aligned_cols=113  Identities=31%  Similarity=0.544  Sum_probs=99.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|..+ ..|+..+.... ++.|+++|+||+|+.+.      
T Consensus        74 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  150 (201)
T 2gco_A           74 ELALWD--TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRE  150 (201)
T ss_dssp             EEEEEC--CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHH
T ss_pred             EEEEEE--CCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhh
Confidence            455666  999999999999999999999999999999999998 56888887754 56899999999998764      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                            +.+..+++..++...+. +++++||+++.||+++|++|.+.+++
T Consensus       151 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          151 LAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             HHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             hcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence                  45778889999999988 79999999999999999999987753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.87  E-value=3.7e-22  Score=140.51  Aligned_cols=112  Identities=28%  Similarity=0.581  Sum_probs=96.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCc----
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA----   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~----   80 (163)
                      .++|||  |||+++|..++..+++++|++|+|||++++.+|..+. .|+..+.... ++.|+++|+||+|+.+.+.    
T Consensus        57 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  133 (182)
T 3bwd_D           57 NLGLWD--TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFID  133 (182)
T ss_dssp             -CEEEC--CCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHH
T ss_pred             EEEEEE--CCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccc
Confidence            344666  9999999999999999999999999999999999987 6998888765 4789999999999865433    


Q ss_pred             ------cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           81 ------VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        81 ------v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                            +..+++..++..++. +++++||+++.||+++|+++.+.+.
T Consensus       134 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          134 HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             C--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             cccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence                  477888899999996 8999999999999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.87  E-value=3.2e-21  Score=136.92  Aligned_cols=117  Identities=32%  Similarity=0.541  Sum_probs=92.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+.|||  |+|+++|..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+ +.+..+
T Consensus        70 ~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~  146 (190)
T 3con_A           70 LLDILD--TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTK  146 (190)
T ss_dssp             EEEEEE--CCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHH
T ss_pred             EEEEEE--CCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHH
Confidence            356666  999999999999999999999999999999999999999999877653 4689999999999876 567788


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      ++..+++.++++++++||+++.|++++|++|.+.+.+...+
T Consensus       147 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  187 (190)
T 3con_A          147 QAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMK  187 (190)
T ss_dssp             HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998765443

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.87  E-value=1.1e-21  Score=141.87  Aligned_cols=114  Identities=26%  Similarity=0.521  Sum_probs=99.8

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC-----
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR-----   78 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-----   78 (163)
                      ..++|||  |+|+++|..++..+++++|++|+|||+++..+|..+ ..|+..+.+.. ++.|++||+||+|+.+.     
T Consensus        76 ~~l~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~  152 (205)
T 1gwn_A           76 IELSLWD--TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLV  152 (205)
T ss_dssp             EEEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHH
T ss_pred             EEEEEEe--CCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhh
Confidence            3466666  999999999999999999999999999999999998 67999887765 56899999999998642     


Q ss_pred             -------CccCHHHHHHHHHHcC-CeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q 031249           79 -------RAVSKEEGEQFAKENG-LLFLEASAR-TAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        79 -------~~v~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~lf~~l~~~~~~  121 (163)
                             +.+..+++..+++.++ .+++++||+ ++.||+++|+.+++.++.
T Consensus       153 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          153 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             HHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence                   5578888999999887 689999999 689999999999988764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.2e-21  Score=140.10  Aligned_cols=115  Identities=35%  Similarity=0.466  Sum_probs=102.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .++|||  |+|+++ ..++..+++.+|++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus        77 ~~~l~D--t~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~  153 (196)
T 2atv_A           77 SMEILD--TAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE  153 (196)
T ss_dssp             EEEEEE--CCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEE--CCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHH
Confidence            456666  999988 78899999999999999999999999999999999877543 57999999999999777778889


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCC-CHHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQNI  123 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~-~i~~lf~~l~~~~~~~~  123 (163)
                      ++..++..++++++++||+++. ||+++|++|.+.+.+..
T Consensus       154 ~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          154 EGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999 99999999999887653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.87  E-value=1.5e-21  Score=137.68  Aligned_cols=112  Identities=29%  Similarity=0.541  Sum_probs=98.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... ++.|+++|+||+|+.+.      
T Consensus        54 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  130 (186)
T 1mh1_A           54 NLGLWD--TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEK  130 (186)
T ss_dssp             EEEEEC--CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHH
T ss_pred             EEEEEE--CCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhh
Confidence            344665  9999999999999999999999999999999999987 6888888765 47899999999998653      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                            +.+..+++..+++..+. +++++||+++.|++++|+++.+.+.
T Consensus       131 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          131 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             HHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence                  45778888899999997 8999999999999999999988775

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.87  E-value=8e-22  Score=143.17  Aligned_cols=114  Identities=28%  Similarity=0.560  Sum_probs=86.2

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... ++.|++||+||+|+.+.      
T Consensus        83 ~l~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  159 (214)
T 2j1l_A           83 HLHIWD--TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNK  159 (214)
T ss_dssp             EEEEEE--C---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHH
T ss_pred             EEEEEE--CCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhh
Confidence            456666  9999999999999999999999999999999999987 6988887765 56899999999998654      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                            +.+..+++..+++..++ +++++||+++.||+++|++|++.+.+.
T Consensus       160 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          160 LRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             HHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             hcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence                  25777888999999998 899999999999999999999988754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.87  E-value=9.8e-22  Score=140.32  Aligned_cols=119  Identities=14%  Similarity=0.245  Sum_probs=94.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--------CCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--------PNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~ilv~nK~D~   75 (163)
                      +..++|||  |+|+++|..++..+++++|++|||||+++..+|..+..|+..+.....        .++|++||+||+|+
T Consensus        62 ~~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  139 (199)
T 4bas_A           62 RVAFTVFD--MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA  139 (199)
T ss_dssp             TEEEEEEE--ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred             CEEEEEEE--CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence            45677777  999999999999999999999999999999999999999988866421        26899999999999


Q ss_pred             CCCCccCHHHHHHH------HHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           76 AHRRAVSKEEGEQF------AKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        76 ~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      .+..  ..++....      ++..+++++++||+++.||+++|++|.+.+.+...+.
T Consensus       140 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~  194 (199)
T 4bas_A          140 AGAK--TAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGKA  194 (199)
T ss_dssp             TTCC--CHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred             CCCC--CHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence            6642  22222211      1346678999999999999999999999988775443

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.86  E-value=1.4e-21  Score=140.46  Aligned_cols=112  Identities=20%  Similarity=0.205  Sum_probs=91.4

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+++||  |||+++|..++..+++++|++|+|||+++..+|..+..|+..+.+.. ..+.|+++|+||+|+.+  .+
T Consensus        67 ~~~~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~  142 (198)
T 1f6b_A           67 AGMTFTTFD--LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AI  142 (198)
T ss_dssp             TTEEEEEEE--ECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CC
T ss_pred             CCEEEEEEE--CCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cC
Confidence            456777887  99999999999999999999999999999999999999999887642 25699999999999965  56


Q ss_pred             CHHHHHHHHHH-----------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKE-----------------NGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        82 ~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..+++..++..                 .+.+++++||+++.||+++|++|.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            77777776653                 23569999999999999999999754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.86  E-value=6.8e-21  Score=131.49  Aligned_cols=111  Identities=31%  Similarity=0.550  Sum_probs=99.8

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      +.+||  |||++++..++..+++.+|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+ +.+..++
T Consensus        53 ~~~~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~  129 (166)
T 2ce2_X           53 LDILD--TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQ  129 (166)
T ss_dssp             EEEEE--CCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHH
T ss_pred             EEEEE--CCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHH
Confidence            45566  999999999999999999999999999999999999999999877653 3699999999999876 5567888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +..+++..+++++++||+++.|++++|+++.+.+.
T Consensus       130 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999998875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=6.4e-21  Score=137.56  Aligned_cols=113  Identities=27%  Similarity=0.525  Sum_probs=99.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~------   78 (163)
                      .++|||  |||+++|..++..+++++|++|+|||+++..+|..+ ..|+..+.... ++.|+++|+||+|+.+.      
T Consensus        74 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  150 (207)
T 2fv8_A           74 ELALWD--TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTE  150 (207)
T ss_dssp             EEEEEE--CTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHH
T ss_pred             EEEEEE--CCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhh
Confidence            456666  999999999999999999999999999999999998 56888887754 56899999999998654      


Q ss_pred             ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                            +.+..+++..++...+. +++++||+++.||+++|++|.+.+.+
T Consensus       151 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          151 LARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             HHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             hhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                  45778888899998888 89999999999999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.86  E-value=4.3e-22  Score=137.97  Aligned_cols=115  Identities=17%  Similarity=0.258  Sum_probs=91.3

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..++|||  |||+++|..++..+++++|++++|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.  .
T Consensus        42 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~  117 (164)
T 1r8s_A           42 KNISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--M  117 (164)
T ss_dssp             SSCEEEEEE--CCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--C
T ss_pred             CCEEEEEEE--cCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--C
Confidence            345778888  99999999999999999999999999999999999999998886542 256899999999999653  2


Q ss_pred             CHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ...+.....     ...+++++++||+++.|++++|++|.+.+.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            333332221     1234569999999999999999999987654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=1.3e-21  Score=136.20  Aligned_cols=112  Identities=29%  Similarity=0.415  Sum_probs=99.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCCCCccCH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      .++|||  |||+++|..++..+++.+|++|+|||+++..+++.+..|+..+.+...  ++.|+++|+||+|+.+.+.+..
T Consensus        52 ~~~~~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~  129 (172)
T 2erx_A           52 TLQITD--TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS  129 (172)
T ss_dssp             EEEEEE--CCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH
T ss_pred             EEEEEE--CCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH
Confidence            466777  999999999999999999999999999999999999999988876542  4689999999999977777888


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .++..++..++++++++||+++.|++++|++|.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          130 SEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             HHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            888899999999999999999999999999998754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.86  E-value=2.3e-23  Score=149.46  Aligned_cols=114  Identities=46%  Similarity=0.830  Sum_probs=92.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||+++|..++..+++++|++|+|||+++..+|..+..|+..+......+.|++||+||+|+.+.+.+..++
T Consensus        83 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~  160 (199)
T 3l0i_B           83 KLQIWD--TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT  160 (199)
T ss_dssp             EEEEEC--CTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC
T ss_pred             EEEEEE--CCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHH
Confidence            456666  999999999999999999999999999999999999999999987765679999999999998777777777


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +..++..++++++++||+++.||+++|++|.+.+.+
T Consensus       161 ~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          161 AKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             -CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999876643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.86  E-value=2.3e-21  Score=139.75  Aligned_cols=113  Identities=27%  Similarity=0.533  Sum_probs=97.7

Q ss_pred             cceee--EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC-
Q 031249            4 SQESF--FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR-   79 (163)
Q Consensus         4 ~~~~~--l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~-   79 (163)
                      +..+.  |||  |||+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... ++.|+++|+||+|+.+.. 
T Consensus        75 ~~~~~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~  151 (204)
T 4gzl_A           75 GKPVNLGLWD--TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD  151 (204)
T ss_dssp             -CEEEEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHH
T ss_pred             CEEEEEEEEE--CCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchh
Confidence            44455  666  9999999999999999999999999999999999997 6888888765 679999999999986543 


Q ss_pred             -----------ccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHH
Q 031249           80 -----------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        80 -----------~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                                 .+..+++..+++..+.. ++++||+++.||+++|+++++.+
T Consensus       152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             hhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence                       27778888999998864 99999999999999999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.85  E-value=3.4e-21  Score=137.46  Aligned_cols=112  Identities=19%  Similarity=0.184  Sum_probs=94.2

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+++||  |||++++..++..+++++|++|+|||+++..+|..+..|+..+.+.. ..+.|+++|+||+|+.+  .+
T Consensus        65 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~  140 (190)
T 1m2o_B           65 GNIKFTTFD--LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AV  140 (190)
T ss_dssp             TTEEEEEEE--CCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CC
T ss_pred             CCEEEEEEE--CCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CC
Confidence            455677777  99999999999999999999999999999999999999998886642 25689999999999965  46


Q ss_pred             CHHHHHHHHHH------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKE------------NGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        82 ~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..+++...+..            .+++++++||+++.||+++|++|.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          141 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            66776665542            34569999999999999999999753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=133.32  Aligned_cols=115  Identities=19%  Similarity=0.255  Sum_probs=95.7

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRR   79 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~   79 (163)
                      ++..+.|||  |+|++++..++..+++++|++|+|||+++..+|..+..|+..+.....   .+.|+++|+||+|+.+  
T Consensus        65 ~~~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--  140 (190)
T 2h57_A           65 SSLSFTVFD--MSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--  140 (190)
T ss_dssp             SSCEEEEEE--ECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--
T ss_pred             CCEEEEEEE--CCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--
Confidence            456778888  999999999999999999999999999999999999999998877543   4689999999999965  


Q ss_pred             ccCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           80 AVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        80 ~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ....+++...+.     ..+++++++||+++.||+++|++|.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          141 AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            345566665553     235679999999999999999999887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.85  E-value=1.7e-21  Score=135.76  Aligned_cols=114  Identities=18%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..++|||  |||++++..++..+++++|++|+|||+++..+|..+..|+..+..... .+.|+++|+||+|+.+..  .
T Consensus        50 ~~~~~~~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~  125 (171)
T 1upt_A           50 NLKFQVWD--LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--T  125 (171)
T ss_dssp             TEEEEEEE--ECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--C
T ss_pred             CEEEEEEE--CCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--C
Confidence            45677888  999999999999999999999999999999999999888888765432 568999999999996532  2


Q ss_pred             HHHHHHH-----HHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQF-----AKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..+....     +...+++++++||+++.|++++|++|.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          126 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            2333222     22335679999999999999999999987753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.84  E-value=6.8e-21  Score=138.63  Aligned_cols=114  Identities=30%  Similarity=0.572  Sum_probs=98.9

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |+|+++|..++..+++++|++|+|||+++..+|..+..|+..+.+.. .++|+++|+||+|+.+.. +. .
T Consensus        64 ~~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~-~~-~  138 (221)
T 3gj0_A           64 IKFNVWD--TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK-VK-A  138 (221)
T ss_dssp             EEEEEEE--ECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS-SC-G
T ss_pred             EEEEEEe--CCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc-cc-H
Confidence            3456666  99999999999999999999999999999999999999999998875 578999999999996643 32 3


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +...++...+++++++||+++.||+++|++|.+.+....
T Consensus       139 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          139 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            566678888999999999999999999999999886543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.84  E-value=1.2e-21  Score=140.02  Aligned_cols=113  Identities=16%  Similarity=0.248  Sum_probs=85.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..++|||  |||+++|..++..+++++|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.  ..
T Consensus        72 ~~~~~i~D--t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~  147 (192)
T 2b6h_A           72 NICFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MP  147 (192)
T ss_dssp             TEEEEEEE--CC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CC
T ss_pred             CEEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CC
Confidence            45677887  99999999999999999999999999999999999999998886543 246899999999999653  23


Q ss_pred             HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .++.....     ...+++++++||+++.||+++|++|.+.+.
T Consensus       148 ~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          148 VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            33332221     122356999999999999999999988764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.84  E-value=5e-21  Score=137.06  Aligned_cols=111  Identities=23%  Similarity=0.333  Sum_probs=91.7

Q ss_pred             ceeeEeeecccchhhhhhch---hhhccCCcEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031249            5 QESFFWSLLQAGQESFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH--   77 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~---~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~--   77 (163)
                      ..++|||  |+|+++|..+.   ..+++++|++|+|||+++.  +++..+..|+..+.... ++.|++||+||+|+.+  
T Consensus        69 ~~l~i~D--t~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~  145 (196)
T 3llu_A           69 VNFQIWD--FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDD  145 (196)
T ss_dssp             CCEEEEE--CCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHH
T ss_pred             eEEEEEE--CCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchh
Confidence            4667777  99999998776   8999999999999999997  77787888888875544 5799999999999754  


Q ss_pred             -----CCccCHHHHHHHHH----HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           78 -----RRAVSKEEGEQFAK----ENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        78 -----~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                           .+.+..+++..+++    ..+++++++||++ .||+++|..+++.+
T Consensus       146 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          146 HKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                 23455556677777    6678899999999 99999999998765

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.84  E-value=1.2e-20  Score=133.52  Aligned_cols=115  Identities=18%  Similarity=0.230  Sum_probs=91.2

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+++||  |||+++|..++..+++++|++++|||+++..+|..+..|+..+.... ..+.|+++|+||+|+.+..  
T Consensus        58 ~~~~l~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--  133 (181)
T 1fzq_A           58 QGFKLNVWD--IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--  133 (181)
T ss_dssp             TTEEEEEEE--CSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--
T ss_pred             CCEEEEEEE--CCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--
Confidence            355678887  99999999999999999999999999999999999988888875432 2568999999999996543  


Q ss_pred             CHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..++.....     ...+++++++||+++.||+++|++|.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            333333221     1224569999999999999999999887654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.9e-20  Score=132.80  Aligned_cols=116  Identities=22%  Similarity=0.280  Sum_probs=91.2

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..++|||  |||++++..++..+++++|++|+|||+++..+|..+..|+..+.+.. ..+.|+++|+||+|+.+  ..
T Consensus        58 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~  133 (187)
T 1zj6_A           58 NNTRFLMWD--IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CM  133 (187)
T ss_dssp             TTEEEEEEE--CCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CC
T ss_pred             CCEEEEEEE--CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CC
Confidence            356778888  99999999999999999999999999999999999999999887653 25689999999999965  33


Q ss_pred             CHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        82 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ..+++.....     ..+++++++||+++.|++++|++|++.+...
T Consensus       134 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          134 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred             CHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence            4555544432     2356799999999999999999998876443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.84  E-value=4.1e-20  Score=130.75  Aligned_cols=116  Identities=19%  Similarity=0.221  Sum_probs=94.7

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..++|||  |||++++..++..+++++|++|+|||++++.+|..+..|+..+.+.. ..+.|+++|+||+|+.+.  .
T Consensus        60 ~~~~~~~~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~  135 (186)
T 1ksh_A           60 RGFKLNIWD--VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--L  135 (186)
T ss_dssp             TTEEEEEEE--ECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--C
T ss_pred             CCEEEEEEE--CCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--C
Confidence            356778888  99999999999999999999999999999999999999988886642 256899999999999653  2


Q ss_pred             CHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        82 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ..++......     ..+++++++||+++.|++++|+++.+.+.++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          136 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            3344433322     2356799999999999999999999887643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.83  E-value=3.1e-21  Score=137.01  Aligned_cols=115  Identities=17%  Similarity=0.234  Sum_probs=92.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+++||  |||++++..++..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+..  .
T Consensus        65 ~~~~~~~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~  140 (189)
T 2x77_A           65 NISFEVWD--LGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--S  140 (189)
T ss_dssp             TEEEEEEE--ECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--C
T ss_pred             CEEEEEEE--CCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--C
Confidence            45677888  999999999999999999999999999999999999888888866432 468999999999996532  2


Q ss_pred             HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      .++.....     ...+++++++||+++.||+++|+++.+.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          141 EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            33332221     22345799999999999999999999888653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.83  E-value=2.5e-20  Score=131.64  Aligned_cols=112  Identities=22%  Similarity=0.284  Sum_probs=91.6

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..++|||  |+|+++|..++..+++++|++|+|||+++..+|..+..|+..+.+.. ..+.|+++|+||+|+.+.  .
T Consensus        63 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~  138 (181)
T 2h17_A           63 NNTRFLMWD--IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--M  138 (181)
T ss_dssp             TTEEEEEEE--ESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--C
T ss_pred             CCEEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--C
Confidence            355778888  99999999999999999999999999999999999999988887642 256899999999999652  3


Q ss_pred             CHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           82 SKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        82 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..+++.....     ..+++++++||+++.||+++|++|.+.
T Consensus       139 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          139 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            4455444332     234579999999999999999999754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.83  E-value=3.5e-19  Score=127.68  Aligned_cols=120  Identities=48%  Similarity=0.813  Sum_probs=105.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|++++..++..+++++|++++|||+++..++..+..|+..+........|+++++||+|+.+.+.+..++
T Consensus        55 ~~~i~D--t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~  132 (199)
T 2f9l_A           55 KAQIWD--TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDE  132 (199)
T ss_dssp             EEEEEE--CSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEE--CCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHH
Confidence            345566  999999999999999999999999999999999999889988876554568999999999997766778888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      +..++...++.++++||+++.+++++|++|.+.+.+...+..
T Consensus       133 a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~  174 (199)
T 2f9l_A          133 ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ  174 (199)
T ss_dssp             HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999987664443

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.83  E-value=8e-20  Score=140.00  Aligned_cols=112  Identities=29%  Similarity=0.524  Sum_probs=99.1

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC-------
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR-------   78 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~-------   78 (163)
                      ++|||  |||+++|..++..+++++|++|+|||+++..+|..+. .|+..+.... +++|+++|+||+|+.+.       
T Consensus       205 ~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~  281 (332)
T 2wkq_A          205 LGLWD--TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL  281 (332)
T ss_dssp             EEEEE--ECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHH
T ss_pred             EEEEe--CCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhc
Confidence            34666  9999999999999999999999999999999999987 6888887765 47999999999998543       


Q ss_pred             -----CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           79 -----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        79 -----~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                           +.+..+++..+++..++ +++++||+++.||+++|+.|.+.+..
T Consensus       282 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence                 56788899999999997 89999999999999999999988753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=4.8e-20  Score=129.87  Aligned_cols=117  Identities=21%  Similarity=0.226  Sum_probs=91.6

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..+.+||  |||++++..++..+++++|++++|||+++..++..+..|+..+.... ..+.|+++|+||+|+.+.  .
T Consensus        60 ~~~~~~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~  135 (183)
T 1moz_A           60 KNLKLNVWD--LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--L  135 (183)
T ss_dssp             TTEEEEEEE--EC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--C
T ss_pred             CCEEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--C
Confidence            355677888  99999999999999999999999999999999999999998886653 256899999999998653  3


Q ss_pred             CHHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKE-----NGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        82 ~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ..++.......     .+++++++||+++.|++++|++|.+.+.+++
T Consensus       136 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          136 SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence            44544443322     2346999999999999999999999887653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.82  E-value=5.6e-21  Score=135.88  Aligned_cols=114  Identities=18%  Similarity=0.286  Sum_probs=90.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..++|||  |||+++|..++..+++++|++|||||+++..++..+..|+..+.... ..+.|+++|+||+|+.+.  ..
T Consensus        66 ~~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~  141 (188)
T 1zd9_A           66 NVTIKLWD--IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LD  141 (188)
T ss_dssp             TEEEEEEE--ECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CC
T ss_pred             CEEEEEEE--CCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CC
Confidence            45677777  99999999999999999999999999999999999999998886642 256899999999999653  23


Q ss_pred             HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .++......     ..+++++++||+++.||+++|++|.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            333222211     234569999999999999999999887644

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.82  E-value=1e-20  Score=147.20  Aligned_cols=118  Identities=17%  Similarity=0.202  Sum_probs=99.2

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHAN-PNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~-~~~p~ilv~n   71 (163)
                      .+..++|||  |+|+++|+.+|..|+++++++|||||+++          ..++.....|+..+..... .++|++|++|
T Consensus       191 ~~~~l~iwD--t~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~N  268 (353)
T 1cip_A          191 KDLHFKMFD--VGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN  268 (353)
T ss_dssp             TTEEEEEEE--ECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred             CCeeEEEEe--CCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEE
Confidence            356788888  89999999999999999999999999998          4678888889988876432 5699999999


Q ss_pred             CCCCCCCC---------------ccCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRR---------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        72 K~D~~~~~---------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |+|+.+++               .++.+++..++.           ..++.++++||+++.||.++|.++...+.+.
T Consensus       269 K~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          269 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             CHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            99985322               366788888876           3456799999999999999999999988754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.82  E-value=1.1e-20  Score=134.09  Aligned_cols=115  Identities=18%  Similarity=0.328  Sum_probs=92.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      ...+++||  |+|+++|..++..+++++|++++|||+++. .+|..+..|+..+.... ++.|++||+||+|+.+.+.+.
T Consensus        55 ~~~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~  131 (184)
T 2zej_A           55 DLVLNVWD--FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRK  131 (184)
T ss_dssp             -CEEEEEE--ECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHH
T ss_pred             ceEEEEEe--cCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhH
Confidence            34567777  999999999999999999999999999997 58999999999987764 468999999999986543322


Q ss_pred             ---HHHHHHHHHHcCCe----EEEEcCCCCC-CHHHHHHHHHHHHHH
Q 031249           83 ---KEEGEQFAKENGLL----FLEASARTAQ-NVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~lf~~l~~~~~~  121 (163)
                         .+.+..+++..+++    ++++||+++. +++++++.+.+.+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence               23345566666776    9999999997 899999888877654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.81  E-value=4e-21  Score=147.47  Aligned_cols=119  Identities=17%  Similarity=0.231  Sum_probs=92.8

Q ss_pred             ceeeEeeecccchhhhhh---chhhhccCCcEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031249            5 QESFFWSLLQAGQESFRS---ITRSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-   78 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~---~~~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-   78 (163)
                      ..++|||  |||||+|..   ++..|+++++++|||||+++.  .++..+..|+..+.+.. +++|++|+|||+|+..+ 
T Consensus        46 v~LqIWD--TAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~  122 (331)
T 3r7w_B           46 IDLAVME--LPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSED  122 (331)
T ss_dssp             SCEEEEE--CCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSH
T ss_pred             EEEEEEE--CCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchh
Confidence            5788888  999999964   468999999999999999997  33444444455555443 67999999999999653 


Q ss_pred             ------CccCHHHHHHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           79 ------RAVSKEEGEQFAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        79 ------~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                            +++..+++.++++.    .++.|+++||++ .+|.+.|..+++.++......+
T Consensus       123 ~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le  180 (331)
T 3r7w_B          123 FKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLE  180 (331)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHH
T ss_pred             hhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHH
Confidence                  34666777777775    678899999998 5999999999988776554443

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.70  E-value=1.3e-21  Score=140.76  Aligned_cols=111  Identities=28%  Similarity=0.533  Sum_probs=95.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC-----
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR-----   79 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~-----   79 (163)
                      .++|||  |||+++|..++..+++++|++|+|||++++.+|..+. .|+..+.... ++.|+++|+||+|+.+..     
T Consensus        79 ~l~i~D--t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~  155 (204)
T 3th5_A           79 NLGLWD--TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEK  155 (204)
Confidence            344666  9999999999999999999999999999999999987 7888887654 368999999999996542     


Q ss_pred             -------ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           80 -------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        80 -------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                             .+..+++..+++..++ +++++||+++.||+++|++|++.+
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          156 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence                   4556777788888887 899999999999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.79  E-value=7.8e-20  Score=136.38  Aligned_cols=105  Identities=27%  Similarity=0.366  Sum_probs=87.0

Q ss_pred             ccchhhhhhchhhhcc---------------------CCcEEEEEEECCCh--HHHHHHHHHHHHHHHh-cCCCCeEEEE
Q 031249           14 QAGQESFRSITRSYYR---------------------GAAGALLVYDITRR--ETFNHLSSWLEDARQH-ANPNMSIMLV   69 (163)
Q Consensus        14 t~G~e~~~~~~~~~~~---------------------~ad~~i~v~d~~~~--~s~~~~~~~~~~l~~~-~~~~~p~ilv   69 (163)
                      ++|+++|..++..+++                     ++|++|+|||++++  .+|+.+..|+..+.+. ...++|++||
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV  204 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV  204 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            6778888888888888                     89999999999998  9999999999998765 2356899999


Q ss_pred             eeCCCCCCCCccCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           70 GNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        70 ~nK~D~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +||+|+.+.+.+  +++..++.. .+++++++||+++.||+++|++|++.+.
T Consensus       205 ~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          205 LTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             EECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            999998654433  567777776 4789999999999999999999988763

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.79  E-value=9.5e-20  Score=141.76  Aligned_cols=119  Identities=15%  Similarity=0.202  Sum_probs=94.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHA-NPNMSIMLVGNK   72 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK   72 (163)
                      ...++|||  |+|+++|+.+|..|+++++++|||||++          +..+|.....|++.+.... ..++|++||+||
T Consensus       182 ~v~l~iwD--taGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          182 GEVYRLFD--VGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             --EEEEEE--ECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             ceeeEEEE--CCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEEC
Confidence            35678888  9999999999999999999999999998          7889999999999887643 257999999999


Q ss_pred             CCCCCCCc--c-------------------CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHH
Q 031249           73 CDLAHRRA--V-------------------SKEEGEQFAKE----------------NGLLFLEASARTAQNVEEAFIKT  115 (163)
Q Consensus        73 ~D~~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~lf~~l  115 (163)
                      +|+.+++.  +                   ..+++..++..                ..+.++++||+++.||.++|.++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            99843221  1                   14566666432                12346899999999999999999


Q ss_pred             HHHHHHHHh
Q 031249          116 AAKILQNIQ  124 (163)
Q Consensus       116 ~~~~~~~~~  124 (163)
                      .+.+.+...
T Consensus       340 ~~~I~~~~l  348 (354)
T 2xtz_A          340 DETLRRRNL  348 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998876543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.78  E-value=1.3e-19  Score=141.33  Aligned_cols=120  Identities=18%  Similarity=0.163  Sum_probs=91.8

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhc-CCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ilv~n   71 (163)
                      .+..++|||  |+|+++++.+|..|+++++++|||||+++          ..++.....|+..+.... ..++|+||++|
T Consensus       199 ~~~~l~i~D--t~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~N  276 (362)
T 1zcb_A          199 KNVPFKMVD--VGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLN  276 (362)
T ss_dssp             TTEEEEEEE--ECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred             CCeEEEEEe--ccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEE
Confidence            356788888  99999999999999999999999999999          678999999999887643 25799999999


Q ss_pred             CCCCCCCC----------------ccCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           72 KCDLAHRR----------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        72 K~D~~~~~----------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      |+|+.+++                .++.+++..++.           ..++.++++||+++.||.++|.++...+.+...
T Consensus       277 K~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          277 KTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             CHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            99985322                266777777652           335678999999999999999999998876543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.78  E-value=9.4e-20  Score=140.68  Aligned_cols=114  Identities=18%  Similarity=0.260  Sum_probs=86.2

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..++|||  |||+++|..++..+++.+|++|+|||+++..+|..+..|+..+..... .++|++||+||+|+.+..  .
T Consensus       208 ~~~l~i~D--t~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~  283 (329)
T 3o47_A          208 NISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--N  283 (329)
T ss_dssp             TEEEEEEE--CC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--C
T ss_pred             cEEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--C
Confidence            45677777  999999999999999999999999999999999999888877755432 579999999999996532  2


Q ss_pred             HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .++......     ..+++++++||+++.||+++|++|++.+.+
T Consensus       284 ~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            333332221     123469999999999999999999987754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.78  E-value=1.6e-19  Score=142.32  Aligned_cols=120  Identities=13%  Similarity=0.099  Sum_probs=96.2

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhc-CCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ilv~n   71 (163)
                      .+..++|||  |+|+++|+.+|..|+++++++|||||+++          ..+|..+..|+..+.... ..++|++||+|
T Consensus       215 ~~v~l~iwD--taGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgN  292 (402)
T 1azs_C          215 DKVNFHMFD--VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN  292 (402)
T ss_dssp             TTEEEEEEE--ECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEE
T ss_pred             CCccceecc--cchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence            356788888  99999999999999999999999999999          889999999999997653 36799999999


Q ss_pred             CCCCCCCCc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEEcCCCCCCH
Q 031249           72 KCDLAHRRA---V---------------------------SKEEGEQFA-----KE--------NGLLFLEASARTAQNV  108 (163)
Q Consensus        72 K~D~~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i  108 (163)
                      |+|+.+.+.   +                           ..+++..++     ..        ..+.++++||+++.||
T Consensus       293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV  372 (402)
T 1azs_C          293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI  372 (402)
T ss_dssp             CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred             ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence            999854221   1                           134555553     22        2345789999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 031249          109 EEAFIKTAAKILQNIQ  124 (163)
Q Consensus       109 ~~lf~~l~~~~~~~~~  124 (163)
                      .++|.++...+.+...
T Consensus       373 ~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          373 RRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999888776543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.77  E-value=2.2e-19  Score=138.14  Aligned_cols=118  Identities=16%  Similarity=0.143  Sum_probs=96.7

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~n   71 (163)
                      .+..++|||  |+|+++|+.+|..|+++++++|||||++          +..++.....|+..+..... .++|++|++|
T Consensus       165 ~~v~l~iwD--tgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~N  242 (327)
T 3ohm_A          165 QSVIFRMVD--VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN  242 (327)
T ss_dssp             TTEEEEEEE--ECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred             eceeeEEEE--cCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEE
Confidence            356788888  8999999999999999999999999654          66778888888888865432 5799999999


Q ss_pred             CCCCCCCC----------------ccCHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRR----------------AVSKEEGEQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        72 K~D~~~~~----------------~v~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |+|+.+++                .++.+++..++.          ..++.++++||+++.||..+|..+...+++.
T Consensus       243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            99985433                467788877743          3456689999999999999999999998864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.77  E-value=7.6e-18  Score=120.17  Aligned_cols=111  Identities=50%  Similarity=0.865  Sum_probs=98.9

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG   86 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~   86 (163)
                      +++||  |+|++++..++..+++.++++++|||.++..+|+.+..|+..+........|+++++||.|+.+.+.+..+++
T Consensus        80 ~~i~D--t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a  157 (191)
T 1oix_A           80 AQIWD--TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEA  157 (191)
T ss_dssp             EEEEE--ECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEEEE--CCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH
Confidence            34466  9999999999999999999999999999999999988899888765545689999999999977667788889


Q ss_pred             HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           87 EQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        87 ~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..++...++.++++|++++.+++++|+.|.+.+
T Consensus       158 ~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.77  E-value=6.5e-19  Score=127.34  Aligned_cols=111  Identities=18%  Similarity=0.212  Sum_probs=79.6

Q ss_pred             cceeeEeeecccchhhhhh-chhhhccCCcEEEEEEECCChH-HHHHHHHHHHHH-HHh--cCCCCeEEEEeeCCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRS-ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDA-RQH--ANPNMSIMLVGNKCDLAHR   78 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~-~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l-~~~--~~~~~p~ilv~nK~D~~~~   78 (163)
                      +..++|||  |||+++|.. ++..|++++|++|||||+++.. ++..+..++..+ ...  ...+.|++||+||+|+.+.
T Consensus        53 ~~~~~i~D--t~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           53 GNSLTLID--LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             CCEEEEEE--CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             ccEEEEEE--CCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            35677887  999999998 8999999999999999999854 466665544444 332  2346899999999999764


Q ss_pred             CccCHHHHHHH----HH---------------------------------Hc--CCeEEEEcCCCC------CCHHHHHH
Q 031249           79 RAVSKEEGEQF----AK---------------------------------EN--GLLFLEASARTA------QNVEEAFI  113 (163)
Q Consensus        79 ~~v~~~~~~~~----~~---------------------------------~~--~~~~~~~Sa~~~------~~i~~lf~  113 (163)
                      ...  ++....    ..                                 ..  +++|+++||+++      .||+++|+
T Consensus       131 ~~~--~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~  208 (214)
T 2fh5_B          131 KSA--KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEK  208 (214)
T ss_dssp             CCH--HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHH
T ss_pred             ccH--HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHH
Confidence            321  211111    11                                 11  556999999999      99999999


Q ss_pred             HHHHH
Q 031249          114 KTAAK  118 (163)
Q Consensus       114 ~l~~~  118 (163)
                      +|.+.
T Consensus       209 ~l~~~  213 (214)
T 2fh5_B          209 WLAKI  213 (214)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99865

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.77  E-value=1.3e-18  Score=133.11  Aligned_cols=114  Identities=17%  Similarity=0.329  Sum_probs=93.5

Q ss_pred             cceeeEeeecccchhhh-----hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESF-----RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~-----~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ilv~nK~D~~   76 (163)
                      +..++|||  |||+++|     ..++..+++++|++|+|||+++..+|+.+..|...+....  .+++|+++|+||+|+.
T Consensus        51 ~~~l~i~D--t~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~  128 (307)
T 3r7w_A           51 NMTLNLWD--CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV  128 (307)
T ss_dssp             TEEEEEEE--ECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             ceEEEEEE--CCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence            45677777  9999999     7889999999999999999999999999877755543321  2579999999999986


Q ss_pred             C--CCc----cCHHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           77 H--RRA----VSKEEGEQFAKENG---LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        77 ~--~~~----v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +  .+.    +..+++..+++.+|   ++++++||++ .++.++|..++..+.
T Consensus       129 ~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          129 QLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             chhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence            5  333    55577888999887   6899999999 899999999887554

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.75  E-value=9.1e-18  Score=122.79  Aligned_cols=118  Identities=17%  Similarity=0.124  Sum_probs=88.4

Q ss_pred             cceeeEeeecccch------hh----hhhchhhhccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEee
Q 031249            4 SQESFFWSLLQAGQ------ES----FRSITRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~------e~----~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      +..++|||  |||+      ++    +.. +..++..+|++|||||+++..+|.  ....|+..+.... ++.|+++|+|
T Consensus        75 ~~~~~l~D--tpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~n  150 (228)
T 2qu8_A           75 LNKYQIID--TPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFN  150 (228)
T ss_dssp             TEEEEEEE--CTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEE
T ss_pred             CCeEEEEE--CCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEe
Confidence            45677777  9998      44    322 345678999999999999987764  2335666665432 3689999999


Q ss_pred             CCCCCCCCccCHH---HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           72 KCDLAHRRAVSKE---EGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        72 K~D~~~~~~v~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      |+|+.+.+.+...   ....++...+  ++++++||+++.||+++|++|.+.+.+...+
T Consensus       151 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          151 KIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             CGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            9999776666654   4556677776  7899999999999999999999998877544

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.75  E-value=2.5e-18  Score=131.24  Aligned_cols=103  Identities=16%  Similarity=0.146  Sum_probs=88.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+++||  |  +++|..+++.|++++|++|+|||++++. ++..+..|+..+..   .++|++||+||+|+.+.+.+  +
T Consensus        64 ~~~iwD--~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~  134 (301)
T 1u0l_A           64 SGVIEN--V--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--R  134 (301)
T ss_dssp             SEEEEE--E--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--H
T ss_pred             eEEEEE--E--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--H
Confidence            678898  6  9999999999999999999999999987 78888999988765   35899999999999653332  4


Q ss_pred             HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q 031249           85 EGEQFAKENG--LLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        85 ~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ++..++..++  .+++++||+++.||+++|..+..
T Consensus       135 ~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          135 KVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            5677777777  89999999999999999988753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.74  E-value=1.8e-18  Score=120.56  Aligned_cols=107  Identities=19%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             cceeeEeeecccchhhhh------hchhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~------~~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +..+++||  |||+++|.      .+...|++  ++|++++|+|+++.+.   ...|+..+.+.   +.|+++|+||+|+
T Consensus        49 ~~~l~i~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl  120 (165)
T 2wji_A           49 GEKFKVVD--LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDL  120 (165)
T ss_dssp             TEEEEEEE--CCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHH
T ss_pred             CcEEEEEE--CCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHh
Confidence            55677888  99998875      34566775  8999999999998543   34577777653   5899999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ...+.+.. ++..+++.++++++++||+++.||+++|+++.+.+
T Consensus       121 ~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          121 AKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             HHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             ccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            65444432 46778888899999999999999999999998764

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.74  E-value=2.1e-18  Score=133.19  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=95.8

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECC----------ChHHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~n   71 (163)
                      .+..++|||  |+|+++|+.+|..|+++++++|||||++          +..++.....|+..+..... .++|++|++|
T Consensus       159 ~~v~l~iwD--taGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N  236 (340)
T 4fid_A          159 KDIPFHLID--VGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN  236 (340)
T ss_dssp             SSCEEEEEE--CCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred             eeeeecccc--CCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence            466788998  9999999999999999999999999998          67889888888888876543 5799999999


Q ss_pred             CCCCCCCC---------------ccCHHHHHHHHH-Hc--------------------------CCeEEEEcCCCCCCHH
Q 031249           72 KCDLAHRR---------------AVSKEEGEQFAK-EN--------------------------GLLFLEASARTAQNVE  109 (163)
Q Consensus        72 K~D~~~~~---------------~v~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~i~  109 (163)
                      |+|+.+++               ....+++..++. .+                          .+.++++||++..+|.
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~  316 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK  316 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence            99984311               124566655443 33                          3558999999999999


Q ss_pred             HHHHHHHHHHHH
Q 031249          110 EAFIKTAAKILQ  121 (163)
Q Consensus       110 ~lf~~l~~~~~~  121 (163)
                      .+|..+...+++
T Consensus       317 ~vF~~v~~~Il~  328 (340)
T 4fid_A          317 RVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999988

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.74  E-value=5.5e-18  Score=118.63  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=83.0

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR   79 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~   79 (163)
                      ++..+.|||  |||+++|..++..+++.+|++|+|||+++   ..+++.+    ..+.   ..+.|+++|+||+|+.+. 
T Consensus        53 ~~~~~~l~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~---~~~~p~ilv~nK~Dl~~~-  122 (178)
T 2lkc_A           53 NDKKITFLD--TPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAK---AANVPIIVAINKMDKPEA-  122 (178)
T ss_dssp             TTEEEEESC--CCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHG---GGSCCEEEEEETTTSSCS-
T ss_pred             CCceEEEEE--CCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHH---hCCCCEEEEEECccCCcC-
Confidence            455677887  99999999999999999999999999988   4444332    2222   245899999999999652 


Q ss_pred             ccCHHHHHHHHHHcC---------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           80 AVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        80 ~v~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                        ..++........+         ++++++||+++.|++++|++|.+.+.....+
T Consensus       123 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          123 --NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             --CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred             --CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence              2333333333222         4799999999999999999999887665443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.72  E-value=1.5e-17  Score=117.56  Aligned_cols=113  Identities=14%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             eeeEeeecccc-----------hhhhhhchhhhccC-CcEEEEEEECCChHHHHHH-HHHHHH--------H-HHhcCCC
Q 031249            6 ESFFWSLLQAG-----------QESFRSITRSYYRG-AAGALLVYDITRRETFNHL-SSWLED--------A-RQHANPN   63 (163)
Q Consensus         6 ~~~l~d~Dt~G-----------~e~~~~~~~~~~~~-ad~~i~v~d~~~~~s~~~~-~~~~~~--------l-~~~~~~~   63 (163)
                      .+.+||  |||           ++++..++..++++ ++++++||++.|..++..+ ..|...        + ......+
T Consensus        45 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
T 2cxx_A           45 NHKIID--MPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD  122 (190)
T ss_dssp             TEEEEE--CCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred             CEEEEE--CCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence            467787  999           89999999999988 8988888888888888776 456542        2 2222246


Q ss_pred             CeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe-------EEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-------FLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      .|+++|+||+|+.+..   .+++..+++.++++       ++++||+++.|++++|+++.+.+.+..
T Consensus       123 ~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          123 IPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             CCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             CceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            8999999999986543   56777888888864       799999999999999999998886543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.69  E-value=4.7e-17  Score=132.83  Aligned_cols=113  Identities=16%  Similarity=0.212  Sum_probs=93.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.|||  |||++.|..++..+++++|++|+|||+++.   +.+..|+..+.... ++.|+++|+||+|+.+.+.+..
T Consensus        97 ~~~~~i~D--t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~  170 (535)
T 3dpu_A           97 ECLFHFWD--FGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQ  170 (535)
T ss_dssp             TCEEEEEC--CCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCH
T ss_pred             eEEEEEEE--CCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCH
Confidence            35677777  999999999999999999999999998765   55677888888765 4689999999999988777888


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +++..++...+.+++++||+++.||+++|+.+.+.+.+.
T Consensus       171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred             HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence            888888888899999999999999999999998877543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.68  E-value=1.1e-16  Score=113.66  Aligned_cols=109  Identities=15%  Similarity=0.204  Sum_probs=81.8

Q ss_pred             ceeeEeeecccc----------hhhhhhchhhhccCC---cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            5 QESFFWSLLQAG----------QESFRSITRSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         5 ~~~~l~d~Dt~G----------~e~~~~~~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ..+.|||  |||          +++|..++..+++.+   |++++|+|+++..++.... ++..+..   .+.|+++|+|
T Consensus        69 ~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~n  142 (195)
T 1svi_A           69 DELHFVD--VPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIAT  142 (195)
T ss_dssp             TTEEEEE--CCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEE
T ss_pred             CcEEEEE--CCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence            3677888  999          899999999999887   9999999999877776532 2333333   3589999999


Q ss_pred             CCCCCCCCccCH--HHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVSK--EEGEQ-FAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        72 K~D~~~~~~v~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      |+|+.+.+++..  +++.. +....+.+++++||+++.||+++|++|.+.+
T Consensus       143 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            999976544322  22222 2222356899999999999999999998765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.68  E-value=6e-17  Score=111.41  Aligned_cols=105  Identities=14%  Similarity=0.067  Sum_probs=77.4

Q ss_pred             cceeeEeeecccchhh-------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~-------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      +..+.|||  |||++.       +...+..+++.+|++|+|||+++..+...  .++......  .+.|+++|+||+|+.
T Consensus        48 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~  121 (161)
T 2dyk_A           48 RGRFLLVD--TGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDP  121 (161)
T ss_dssp             TEEEEEEE--CGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSG
T ss_pred             CceEEEEE--CCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccc
Confidence            45677888  999887       45567788999999999999998543322  222222222  248999999999986


Q ss_pred             CCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           77 HRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        77 ~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +..    +++..++ ..++ +++++||+++.|++++|+++.+.+
T Consensus       122 ~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          122 KHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             GGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            532    3334455 5677 799999999999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.67  E-value=6.5e-18  Score=118.63  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=80.2

Q ss_pred             ccceeeEeeecccchhhhhhc--------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      ++..+++||  |||++++...        ...+++++|++++|||+++..++. ...|+..+.+....++|+++|+||+|
T Consensus        50 ~~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~D  126 (172)
T 2gj8_A           50 DGMPLHIID--TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKAD  126 (172)
T ss_dssp             TTEEEEEEE--CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred             CCeEEEEEE--CCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECcc
Confidence            355678888  9998653211        124689999999999999988876 34688887776555799999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +.+...       .++...+.+++++||+++.||+++|++|.+.+
T Consensus       127 l~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          127 ITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             HHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             CCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            844211       11222456799999999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.67  E-value=4.4e-17  Score=115.15  Aligned_cols=110  Identities=17%  Similarity=0.134  Sum_probs=87.0

Q ss_pred             cceeeEeeecccchhhhh------hchhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~------~~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +..+++||  |||++++.      .++..+++  .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+
T Consensus        53 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl  124 (188)
T 2wjg_A           53 GEKFKVVD--LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDL  124 (188)
T ss_dssp             TEEEEEEE--CCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHH
T ss_pred             CcEEEEEE--CCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhc
Confidence            55677887  99998875      45677775  5999999999876   4555667777765   35899999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ...+.+. .++..+++.++++++++||+++.|++++|+++.+.+...
T Consensus       125 ~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          125 AKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             HHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             cccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            6544443 456778888899999999999999999999998877543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.65  E-value=4.7e-16  Score=118.91  Aligned_cols=111  Identities=15%  Similarity=0.090  Sum_probs=89.8

Q ss_pred             cceeeEeeecccchhh----------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249            4 SQESFFWSLLQAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      +..+.|||  |||+.+          +...+..+++++|++++|+|+++..++.+...|++.+...   +.|+++|+||+
T Consensus        58 ~~~i~lvD--TPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~  132 (308)
T 3iev_A           58 EAQIIFLD--TPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKI  132 (308)
T ss_dssp             TEEEEEEE--CCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECG
T ss_pred             CCeEEEEE--CcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECc
Confidence            34555666  999844          4467788999999999999999988888877778877663   48999999999


Q ss_pred             CCCCCCccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           74 DLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        74 D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      |+...+.........+...++  .+++++||+++.|++++|+++.+.+
T Consensus       133 Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          133 DKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             GGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence            997444555677777887775  6799999999999999999998766

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.64  E-value=5.8e-16  Score=109.61  Aligned_cols=109  Identities=14%  Similarity=0.224  Sum_probs=80.8

Q ss_pred             ceeeEeeecccc----------hhhhhhchhhhccCC---cEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCeEEEE
Q 031249            5 QESFFWSLLQAG----------QESFRSITRSYYRGA---AGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLV   69 (163)
Q Consensus         5 ~~~~l~d~Dt~G----------~e~~~~~~~~~~~~a---d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ilv   69 (163)
                      ..+.+||  |||          ++.+..++..+++.+   |++++|+|+++..+.  ..+..|+.   ..   +.|+++|
T Consensus        68 ~~~~i~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v  139 (195)
T 3pqc_A           68 SKYYFVD--LPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIV  139 (195)
T ss_dssp             TTEEEEE--CCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEE
T ss_pred             CcEEEEE--CCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEE
Confidence            4577787  999          888999999998876   999999998875333  33333333   22   4899999


Q ss_pred             eeCCCCCCCCc--cCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           70 GNKCDLAHRRA--VSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        70 ~nK~D~~~~~~--v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +||+|+.+...  ...+++..++... .++++++||+++.||+++|++|.+.+.+
T Consensus       140 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          140 LTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            99999865322  2234555566553 3689999999999999999999887643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.63  E-value=5.4e-16  Score=124.35  Aligned_cols=117  Identities=15%  Similarity=0.059  Sum_probs=90.8

Q ss_pred             ccceeeEeeecccc----------hhhhhhchhh-hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAG----------QESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G----------~e~~~~~~~~-~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ++..++|||  |||          +|+|..++.. +++.+|++|+|+|+++..+.. ...|+..+..   .++|+++|+|
T Consensus       241 ~~~~~~l~D--T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~N  314 (456)
T 4dcu_A          241 NQQEFVIVD--TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVN  314 (456)
T ss_dssp             TTEEEEETT--GGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEE
T ss_pred             CCceEEEEE--CCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEE
Confidence            355677777  999          7888887765 889999999999998754322 2345555554   3589999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           72 KCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      |+|+.+.+.+..+++...+...     +.+++++||++|.||+++|+++.+.+......
T Consensus       315 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          315 KWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             CGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             ChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence            9999876666667777666654     57899999999999999999999887665433

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.62  E-value=1.8e-16  Score=114.72  Aligned_cols=102  Identities=16%  Similarity=0.226  Sum_probs=77.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccC----CcEEEEEEECC-ChHHHHHHHHHHHHHHHh----cCCCCeEEEEeeCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRG----AAGALLVYDIT-RRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCD   74 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~----ad~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ilv~nK~D   74 (163)
                      +..++|||  |||++++..++..++++    +|++|+|||++ +..+|..+..|+..+...    ...++|+++|+||+|
T Consensus        54 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  131 (218)
T 1nrj_B           54 GSGVTLVD--FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE  131 (218)
T ss_dssp             GSSCEEEE--CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred             CceEEEEE--CCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchH
Confidence            34678888  99999999999999988    99999999999 888999988888888654    235799999999999


Q ss_pred             CCCCCccC------HHHHHHHHHHcCCeEEEEcCCCCCC
Q 031249           75 LAHRRAVS------KEEGEQFAKENGLLFLEASARTAQN  107 (163)
Q Consensus        75 ~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~~~  107 (163)
                      +.+.+.+.      .+++..++...+..++++||+++.+
T Consensus       132 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          132 LFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             STTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             hcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            97755443      3456667777778899999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.62  E-value=6.9e-16  Score=115.27  Aligned_cols=108  Identities=19%  Similarity=0.128  Sum_probs=84.5

Q ss_pred             cceeeEeeecccchhhhhhc------hhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSI------TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~------~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +..+.|||  |||+..+...      ...|+  .++|++|+|+|+++.++..   .|+.++.+.   +.|+++++||+|+
T Consensus        51 ~~~~~l~D--tpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~~pvilv~NK~Dl  122 (258)
T 3a1s_A           51 GYTINLID--LPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILEM---EKKVILAMTAIDE  122 (258)
T ss_dssp             TEEEEEEE--CCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHTT---TCCEEEEEECHHH
T ss_pred             CeEEEEEE--CCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHhc---CCCEEEEEECcCC
Confidence            45677888  9999887753      35666  5899999999999865433   455666543   5899999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .+.+.+. .++..+++.++++++++||+++.|++++|+++.+.+.
T Consensus       123 ~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          123 AKKTGMK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHTTCC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCccchH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            6544444 2467788889999999999999999999999987653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.61  E-value=5.5e-16  Score=116.66  Aligned_cols=107  Identities=17%  Similarity=0.154  Sum_probs=84.7

Q ss_pred             cceeeEeeecccchhhhh------hchhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~------~~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +..++|||  |||++++.      .++..|+.  ++|++|+|+|+++.+++   ..|..++.+   .+.|+++++||+|+
T Consensus        48 ~~~l~l~D--tpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl  119 (272)
T 3b1v_A           48 NKDLEIQD--LPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDV  119 (272)
T ss_dssp             CTTEEEEE--CCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHH
T ss_pred             CCeEEEEE--CCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhh
Confidence            45688888  99998886      46677776  69999999999986544   346666655   35899999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+.+.+. .++..+++.++++++++||+++.||+++|+++.+.+
T Consensus       120 ~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          120 LDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             HHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             CCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            6544444 356678888899999999999999999999997654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.61  E-value=1.3e-15  Score=121.50  Aligned_cols=114  Identities=16%  Similarity=0.082  Sum_probs=87.6

Q ss_pred             ccceeeEeeecccch----------hhhhhchh-hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQ----------ESFRSITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~----------e~~~~~~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ++..++|||  |||+          |+|..++. .+++.+|++++|+|+++..++++. .|+..+..   .++|+++|+|
T Consensus       221 ~~~~~~l~D--T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~N  294 (436)
T 2hjg_A          221 NQQEFVIVD--TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVN  294 (436)
T ss_dssp             TTEEEEETT--HHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEE
T ss_pred             CCeEEEEEE--CCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEE
Confidence            355678887  9998          67776655 488999999999999998887775 56666654   3589999999


Q ss_pred             CCCCCCCCccCHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVSKEEGEQ-FAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |+|+.+.+....++... +...    .+.+++++||++|.||+++|+.+.+.+...
T Consensus       295 K~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          295 KWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             CGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             CccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence            99997655544444432 2232    357899999999999999999998887654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.60  E-value=2.1e-15  Score=109.31  Aligned_cols=114  Identities=16%  Similarity=0.127  Sum_probs=79.7

Q ss_pred             cceeeEeeecccc----------hhhhhhchhhhccC---CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            4 SQESFFWSLLQAG----------QESFRSITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         4 ~~~~~l~d~Dt~G----------~e~~~~~~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      +..+.|||  |||          +++|..++..|++.   +|++|||+|+++..+.. ...++..+..   .+.|+++|+
T Consensus        78 ~~~~~l~D--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~  151 (223)
T 4dhe_A           78 EPVAHLVD--LPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLL  151 (223)
T ss_dssp             SCSEEEEE--CCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEE
T ss_pred             CCcEEEEc--CCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEE
Confidence            45677888  999          67788888888877   78899999998753322 2334555544   358999999


Q ss_pred             eCCCCCCCCccC--HHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVS--KEEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        71 nK~D~~~~~~v~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ||+|+.+...+.  .++.......       .+.+++++||+++.||+++|++|.+.+....
T Consensus       152 nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          152 TKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             eccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            999986533221  1222222322       4567999999999999999999988875543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.58  E-value=4.4e-15  Score=119.61  Aligned_cols=111  Identities=16%  Similarity=0.059  Sum_probs=72.9

Q ss_pred             ccceeeEeeecccchhhhhhch--------hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSIT--------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      ++.++.|||  |||++++...+        ..+++.+|++|+|||+++..++..+..+...+....  ++|+++|+||+|
T Consensus       279 ~g~~l~liD--T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~D  354 (476)
T 3gee_A          279 DKTMFRLTD--TAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLD  354 (476)
T ss_dssp             TTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTT
T ss_pred             CCeEEEEEE--CCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcC
Confidence            466788888  99998877554        347899999999999999887754333333332222  589999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +.+...+   ....+......+++++||+++.||+++|++|.+.+.
T Consensus       355 l~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          355 RAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             SCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             CCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            9764433   223344432467999999999999999999988775

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.57  E-value=5.8e-16  Score=115.59  Aligned_cols=107  Identities=14%  Similarity=0.030  Sum_probs=81.0

Q ss_pred             ccceeeEeeecccchhhhhh----------chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            3 FSQESFFWSLLQAGQESFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~----------~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      ++..+.|||  |||+..+..          ++..|+  +++|++|+|+|+++.+++..+.   ..+..   .+.|+++|+
T Consensus        46 ~~~~~~lvD--tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~---~~l~~---~~~pvilv~  117 (256)
T 3iby_A           46 GEHLIEITD--LPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLT---SQLFE---LGKPVVVAL  117 (256)
T ss_dssp             TTEEEEEEE--CCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHH---HHHTT---SCSCEEEEE
T ss_pred             CCeEEEEEe--CCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHH---HHHHH---cCCCEEEEE
Confidence            455778888  999987764          566777  8999999999999876554433   33322   358999999


Q ss_pred             eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ||+|+.+.+.+. .....+.+..+++++++||+++.|++++|+++.+.
T Consensus       118 NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          118 NMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             ECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             EChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            999985543332 22445777889999999999999999999999764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.57  E-value=2.1e-14  Score=111.75  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=88.9

Q ss_pred             cceeeEeeecccchhhhh---------hchhhhccCCcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            4 SQESFFWSLLQAGQESFR---------SITRSYYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~---------~~~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      +..+++||  |||...+.         .....+...+|++++|+|+++..  ++.....|+..+..... +.|+++|+||
T Consensus       213 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK  289 (357)
T 2e87_A          213 YFRYQIID--TPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINK  289 (357)
T ss_dssp             TEEEEEEE--CTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECC
T ss_pred             CceEEEEe--CCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence            34577787  99975432         12224556799999999998876  67777788888877543 6899999999


Q ss_pred             CCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        73 ~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      +|+.....  .+++..++...+++++++||++|.|++++|+++.+.+.....
T Consensus       290 ~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~~~  339 (357)
T 2e87_A          290 IDVADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLAE  339 (357)
T ss_dssp             TTTCCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             cccCChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHHHh
Confidence            99865332  245566677788899999999999999999999998866533

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.56  E-value=5.5e-15  Score=112.76  Aligned_cols=98  Identities=18%  Similarity=0.129  Sum_probs=81.5

Q ss_pred             chhhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-HHHHHHHHHHc
Q 031249           16 GQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKEN   93 (163)
Q Consensus        16 G~e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-~~~~~~~~~~~   93 (163)
                      .++++..+.+.+++++|++++|||++++. ++..+..|+..+..   .++|++||+||+|+.++.++. .++...+++..
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA  141 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence            38999999999999999999999999886 88888899987765   358999999999986533222 34555666777


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHH
Q 031249           94 GLLFLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        94 ~~~~~~~Sa~~~~~i~~lf~~l~  116 (163)
                      +++++++||+++.|++++|..+.
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc
Confidence            89999999999999999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.55  E-value=1e-14  Score=112.97  Aligned_cols=110  Identities=15%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             ceeeEeeecccchhh----hhhchhhhcc---CCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcC--CCCeEEEEeeC
Q 031249            5 QESFFWSLLQAGQES----FRSITRSYYR---GAAGALLVYDITR---RETFNHLSSWLEDARQHAN--PNMSIMLVGNK   72 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~----~~~~~~~~~~---~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK   72 (163)
                      ..+.|||  |||...    +..+...|++   .+|++|+|+|+++   ..+++++..|+.++..+..  ..+|+++|+||
T Consensus       206 ~~~~l~D--tPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK  283 (342)
T 1lnz_A          206 RSFVMAD--LPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANK  283 (342)
T ss_dssp             CEEEEEE--HHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEEC
T ss_pred             ceEEEec--CCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEEC
Confidence            5678888  999654    4446666655   4999999999998   7889999999999987653  46899999999


Q ss_pred             CCCCCCCccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           73 CDLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        73 ~D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +|+.+.    .+....+.+.+.  .+++++||+++.|++++|.+|.+.+.
T Consensus       284 ~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          284 MDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE  329 (342)
T ss_dssp             TTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             ccCCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence            998542    244566777766  67999999999999999999988764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.54  E-value=2.7e-15  Score=119.18  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=84.1

Q ss_pred             eeeEeeecccchhhhhhc-------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSI-------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~-------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~   78 (163)
                      ++.|||  |||+++|..+       +..+++++|++|+|||+....   ....|+..+.+.   ++|+++|+||+|+...
T Consensus        84 ~l~liD--TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~  155 (423)
T 3qq5_A           84 PVTLVD--TPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGE  155 (423)
T ss_dssp             EEEEEE--CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTC
T ss_pred             eEEEEE--CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCc
Confidence            677888  9999988765       455889999999999984433   334577777665   4899999999999765


Q ss_pred             CccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           79 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        79 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ...  +....+.+.++++++++||+++.|++++|++|.+.+.
T Consensus       156 ~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          156 KAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             CCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred             cHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence            443  5566677777889999999999999999999988774

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.54  E-value=3.4e-14  Score=117.11  Aligned_cols=107  Identities=21%  Similarity=0.243  Sum_probs=84.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||+++|...+..+++.+|++|+|+|+++..+++....|...+.    .++|+++++||+|+....  ..+.
T Consensus        72 ~l~liD--TPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v  143 (599)
T 3cb4_D           72 QLNFID--TPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERV  143 (599)
T ss_dssp             EEEEEE--CCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHH
T ss_pred             EEEEEE--CCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHH
Confidence            455666  99999999999999999999999999998766666666655443    248999999999996532  2334


Q ss_pred             HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        86 ~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ..++...+++.   ++++||+++.||+++|+++++.+.
T Consensus       144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            45666777774   899999999999999999887653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.53  E-value=3e-15  Score=112.66  Aligned_cols=108  Identities=13%  Similarity=0.090  Sum_probs=80.5

Q ss_pred             ccceeeEeeecccchhhhhh----------chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            3 FSQESFFWSLLQAGQESFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~----------~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      .+.++.|||  |||+..+..          ++..|+  +++|++|+|+|+++.+....   +...+.+.   ++|+++|+
T Consensus        48 ~~~~~~liD--tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~  119 (274)
T 3i8s_A           48 TDHQVTLVD--LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVAL  119 (274)
T ss_dssp             SSCEEEEEE--CCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEE
T ss_pred             CCCceEEEE--CcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEE
Confidence            356788888  999888763          234444  79999999999998655443   44444443   48999999


Q ss_pred             eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ||+|+.+.+.+. .....+.+.++++++++||+++.|++++|+++.+.+
T Consensus       120 NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          120 NMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             ECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             ECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            999985533322 234567778899999999999999999999887654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.53  E-value=5.5e-14  Score=115.81  Aligned_cols=107  Identities=21%  Similarity=0.243  Sum_probs=84.4

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||+++|...+..+++.+|++|+|+|+++..+++....|.....    .++|+++++||+|+....  ....
T Consensus        74 ~inliD--TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v  145 (600)
T 2ywe_A           74 KLHLID--TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRV  145 (600)
T ss_dssp             EEEEEC--CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHH
T ss_pred             EEEEEE--CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHH
Confidence            344555  99999999999999999999999999999877776666655443    358999999999996532  2233


Q ss_pred             HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        86 ~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ..++...+++.   ++++||+++.||+++|+++++.+.
T Consensus       146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            45566666764   899999999999999999887653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.52  E-value=6.5e-14  Score=110.68  Aligned_cols=111  Identities=17%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--   82 (163)
                      ..+.|||  |||+++|...+..++..+|++|+|+|+++..++.....|+..+....  ..|+++++||+|+.+.....  
T Consensus        75 ~~~~iiD--tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~  150 (403)
T 3sjy_A           75 RRISFID--APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQ  150 (403)
T ss_dssp             EEEEEEE--CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHH
Confidence            3566666  99999999999999999999999999998766667777777665543  25899999999986532211  


Q ss_pred             HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .++...+....   +++++++||+++.|++++|+.|.+.+
T Consensus       151 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          151 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            12222233222   46799999999999999999987654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.52  E-value=5.9e-14  Score=113.17  Aligned_cols=108  Identities=18%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             ccceeeEeeecccchh-hhhh--------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249            3 FSQESFFWSLLQAGQE-SFRS--------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e-~~~~--------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      ++.++.|||  |||.+ ++..        ....+++.+|++|+|||+++..++++. .+++.+     .++|+++|+||+
T Consensus       289 ~g~~~~l~D--TaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~  360 (482)
T 1xzp_A          289 RGILFRIVD--TAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKV  360 (482)
T ss_dssp             TTEEEEEEE--SSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEEC
T ss_pred             CCeEEEEEE--CCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECc
Confidence            466788888  99988 6543        245688999999999999988777653 233333     358999999999


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        74 D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      |+.+.  +..+++..++. .+.+++++||+++.|++++|++|.+.+..
T Consensus       361 DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          361 DVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             SSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             ccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            99652  44555554432 34689999999999999999999987764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.50  E-value=1.2e-13  Score=109.40  Aligned_cols=107  Identities=22%  Similarity=0.225  Sum_probs=73.6

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      ..+.|||  |||+++|...+...+..+|++|+|+|+++    .++++.+..    +...  ...|+++++||+|+.+...
T Consensus        81 ~~i~iiD--tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~  152 (408)
T 1s0u_A           81 RRVSFVD--SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQ  152 (408)
T ss_dssp             EEEEEEE--CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTT
T ss_pred             cEEEEEE--CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHH
Confidence            3466666  99999999888888889999999999985    455554432    2222  1258999999999976433


Q ss_pred             --cCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           81 --VSKEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        81 --v~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                        ...+++..++...   +.+++++||+++.|+++++++|.+.+
T Consensus       153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence              2345566666543   56799999999999999999987654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.50  E-value=1.8e-14  Score=108.14  Aligned_cols=110  Identities=21%  Similarity=0.150  Sum_probs=83.7

Q ss_pred             ccceeeEeeecccchhhhhh------chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~------~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+..+.|||  |||+..+..      ++..|+  .++|++++|+|+++..   ....|+..+....  ..|+++|+||+|
T Consensus        48 ~~~~~~l~D--tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~D  120 (271)
T 3k53_A           48 REKEFLVVD--LPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFD  120 (271)
T ss_dssp             TTEEEEEEE--CCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHH
T ss_pred             CCceEEEEe--CCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChh
Confidence            345677888  999988776      566777  7899999999998853   3334555554432  289999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +.+.+.+.. ....+.+.++++++++||+++.|+.++|+.+...+.
T Consensus       121 l~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~  165 (271)
T 3k53_A          121 LLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE  165 (271)
T ss_dssp             HHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             cCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            754333332 266678888999999999999999999999987753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.49  E-value=1.9e-14  Score=109.68  Aligned_cols=107  Identities=19%  Similarity=0.132  Sum_probs=75.8

Q ss_pred             cceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEeeCCC
Q 031249            4 SQESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +..+.|||  |||..+        +......+++++|+++||||+++..+..  ..|+ +.+.+.. ++.|+++|+||+|
T Consensus        54 ~~~l~l~D--TpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~D  128 (301)
T 1wf3_A           54 RRQIVFVD--TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLD  128 (301)
T ss_dssp             TEEEEEEE--CCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGG
T ss_pred             CcEEEEec--CccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcc
Confidence            34556666  999765        5566778899999999999998865443  2443 4554432 4689999999999


Q ss_pred             CCCCCccCHHHHHHHHHHc-C-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKEN-G-LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +.+...    +....+..+ + .+++++||+++.|++++|+.+.+.+
T Consensus       129 l~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          129 AAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             GCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             cCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            865322    022233332 3 4689999999999999999987654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.49  E-value=1.9e-14  Score=103.55  Aligned_cols=104  Identities=8%  Similarity=-0.011  Sum_probs=68.8

Q ss_pred             cccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHH---hc--CCCCeEEEEeeCC-CCCCCCccCHHHH
Q 031249           13 LQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HA--NPNMSIMLVGNKC-DLAHRRAVSKEEG   86 (163)
Q Consensus        13 Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~---~~--~~~~p~ilv~nK~-D~~~~~~v~~~~~   86 (163)
                      +.+||++++++|+.||.++|++|||+|.+|.+-++ ....+.++..   ..  ..+.|++|++||. |++  ...+..++
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI  184 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYL  184 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHH
Confidence            35689999999999999999999999999875443 3333322222   11  1468999999995 674  35666665


Q ss_pred             HHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           87 EQFAKE----NGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        87 ~~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+...-    ....++.|||.+|+|+.+.++||++.+
T Consensus       185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            544322    223489999999999999999998655

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.49  E-value=8.8e-14  Score=111.04  Aligned_cols=109  Identities=19%  Similarity=0.194  Sum_probs=77.9

Q ss_pred             ccceeeEeeecccchhh---------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249            3 FSQESFFWSLLQAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC   73 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~---------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~   73 (163)
                      ++..++|||  |||.+.         +...+..++++||++|||+|+++..+..+  .++..+.+.  .++|++||+||+
T Consensus        47 ~~~~~~l~D--T~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~  120 (439)
T 1mky_A           47 YGKTFKLVD--TCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKA  120 (439)
T ss_dssp             TTEEEEEEE--CTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESC
T ss_pred             CCeEEEEEE--CCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCC
Confidence            456788888  999764         44567789999999999999987655433  222222222  248999999999


Q ss_pred             CCCCCCccCHHHH-HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           74 DLAHRRAVSKEEG-EQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        74 D~~~~~~v~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      |+.+.  . ..++ ..+. ..++ +++++||++|.|+.++|+++...+.+
T Consensus       121 D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          121 ENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             CSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence            98431  1 1222 3333 4566 68999999999999999999988754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.48  E-value=5.2e-13  Score=110.10  Aligned_cols=109  Identities=24%  Similarity=0.238  Sum_probs=79.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      .+.|||  |||+++|..++..+++.+|++|+|+|+++   +++++.+.    .+..   .++|+++++||+|+.......
T Consensus        71 ~i~liD--TPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~  141 (594)
T 1g7s_A           71 GLFFID--TPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVH  141 (594)
T ss_dssp             EEEEEC--CCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCC
T ss_pred             CEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccc
Confidence            467777  99999999999999999999999999999   77776543    2333   358999999999985421100


Q ss_pred             -------------H---H-------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           83 -------------K---E-------EGEQFAKENG---------------LLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        83 -------------~---~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                                   .   +       +....+.+.+               .+++++||++|.|+.++++++...+....
T Consensus       142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence                         0   0       1111122222               26999999999999999999988776443

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.48  E-value=1.8e-13  Score=110.51  Aligned_cols=108  Identities=18%  Similarity=0.080  Sum_probs=81.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      +..+.|||  |||+++|...+..++..+|++|+|+|+++   +++++.+.    .+..   .++|+++++||+|+.+...
T Consensus        72 ~~~i~iiD--tPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~  142 (482)
T 1wb1_A           72 NYRITLVD--APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEE  142 (482)
T ss_dssp             TEEEEECC--CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHH
T ss_pred             CEEEEEEE--CCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchh
Confidence            44667777  99999999999999999999999999988   55555432    2322   2478899999999865211


Q ss_pred             --cCHHHHHHHHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           81 --VSKEEGEQFAKEN----GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        81 --v~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                        ...+++..++...    +.+++++||+++.|+++++++|.+.+.
T Consensus       143 ~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          143 IKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence              1123445555555    467999999999999999999988765

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.44  E-value=3.8e-13  Score=108.58  Aligned_cols=104  Identities=14%  Similarity=0.050  Sum_probs=69.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHH------HHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|||  |||+++|...+..+++.+|++|+|+|+++..++..      ....+..+...  ...|++||+||+|+.+
T Consensus       110 ~~~~~iiD--TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~  185 (483)
T 3p26_A          110 RANFTIVD--APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD  185 (483)
T ss_dssp             SCEEEEEC--CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGT
T ss_pred             CceEEEEE--CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCccc
Confidence            34566666  99999999999999999999999999998654322      22222222222  2257999999999865


Q ss_pred             CCccCHHH----HHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 031249           78 RRAVSKEE----GEQFAKENG-----LLFLEASARTAQNVEEA  111 (163)
Q Consensus        78 ~~~v~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  111 (163)
                      .++...++    +..++...+     ++++++||++|.|+.++
T Consensus       186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            33332333    333344433     46999999999999864

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.44  E-value=1.3e-13  Score=110.73  Aligned_cols=107  Identities=17%  Similarity=0.091  Sum_probs=69.9

Q ss_pred             ccceeeEeeecccchhhhhhchh--------hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~--------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      ++.++.|||  |||.+.+...+.        .+++.+|++++|+|+++..+... ..|++.+.     ..|+++|+||+|
T Consensus       270 ~g~~v~liD--T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~D  341 (462)
T 3geh_A          270 GGIPVQVLD--TAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKID  341 (462)
T ss_dssp             TTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTT
T ss_pred             CCEEEEEEE--CCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCC
Confidence            566788888  999877655433        36889999999999998766554 34555442     269999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +.....+.  ....+.  .+.+++++||+++.|++++|++|.+.+..
T Consensus       342 l~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          342 LVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             SSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             CCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            96644332  111111  34679999999999999999999887654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.43  E-value=2.6e-13  Score=107.43  Aligned_cols=107  Identities=18%  Similarity=0.204  Sum_probs=76.9

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      ..+.|||  |||+++|...+...+..+|++|+|+|+++    .++++.+..    +....  ..|+++++||+|+.+...
T Consensus        83 ~~i~iiD--tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~  154 (410)
T 1kk1_A           83 RRVSFID--APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEK  154 (410)
T ss_dssp             EEEEEEE--CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHH
T ss_pred             cEEEEEE--CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHH
Confidence            3456666  99999999888888889999999999985    445554432    22222  258999999999865321


Q ss_pred             --cCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           81 --VSKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        81 --v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                        ...+++..++..   .+++++++||+++.|+++++++|...+
T Consensus       155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence              122344445543   356899999999999999999987644

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.43  E-value=6.2e-14  Score=111.82  Aligned_cols=107  Identities=13%  Similarity=0.062  Sum_probs=73.5

Q ss_pred             ccceeeEeeecccchh--------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAGQE--------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e--------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+..+.|||  |||++        ++...+..+++.+|++|||+|+.+..++.+  .++..+.+.  .++|++||+||+|
T Consensus        49 ~~~~~~l~D--T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D  122 (436)
T 2hjg_A           49 LNYDFNLID--TGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLD  122 (436)
T ss_dssp             CSSCCEEEC-----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCC
T ss_pred             CCceEEEEE--CCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcc
Confidence            456788888  99985        677888899999999999999988766554  333333322  4689999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +.+...    ++..+. ..++ +++++||++|.|+.++|+++.+.+.
T Consensus       123 ~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          123 NTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             C---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             Cccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence            864321    111122 3455 6899999999999999999987764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.43  E-value=2.6e-13  Score=106.16  Aligned_cols=111  Identities=7%  Similarity=-0.028  Sum_probs=81.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEee-CCCCCCCCcc
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGN-KCDLAHRRAV   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ilv~n-K~D~~~~~~v   81 (163)
                      +..+.|||  |||+++|.......++.+|++|+|+| ++ ..+....+++..+...   ++|. ++++| |+|+ +...+
T Consensus        59 ~~~i~iiD--tPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~  130 (370)
T 2elf_A           59 GRNMVFVD--AHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAI  130 (370)
T ss_dssp             SSEEEEEE--CTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHH
T ss_pred             CeEEEEEE--CCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHH
Confidence            45677777  99999998888888999999999999 54 3344455566655543   3676 88899 9998 43222


Q ss_pred             CH--HHHHHHHHHcC---CeEEE--EcCCC---CCCHHHHHHHHHHHHHHH
Q 031249           82 SK--EEGEQFAKENG---LLFLE--ASART---AQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        82 ~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~~lf~~l~~~~~~~  122 (163)
                      ..  +++..+++..+   +++++  +||++   +.|++++++.|.+.+...
T Consensus       131 ~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          131 DELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence            11  34455554443   67999  99999   999999999998876654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.43  E-value=2.7e-13  Score=108.27  Aligned_cols=105  Identities=22%  Similarity=0.197  Sum_probs=73.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCe-EEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMS-IMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~   76 (163)
                      +..+.|||  |||+++|...+..+++.+|++|||+|+++...   |.   ...+++..+..   .++| +++++||+|+.
T Consensus        94 ~~~~~iiD--TPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           94 KKHFTILD--APGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDP  168 (439)
T ss_pred             CeEEEEEE--CCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCc
Confidence            34566666  99999999999999999999999999988532   21   12222233322   2466 99999999985


Q ss_pred             CCC------ccCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q 031249           77 HRR------AVSKEEGEQFAKENG------LLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        77 ~~~------~v~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~lf~  113 (163)
                      ...      +...++...+++..+      ++++++||++|.|+.++++
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            311      111234445555555      4699999999999999766

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.43  E-value=5.1e-14  Score=112.30  Aligned_cols=107  Identities=17%  Similarity=0.168  Sum_probs=76.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc----CCC-CeEEEEeeCCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA----NPN-MSIMLVGNKCDLAHR   78 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~-~p~ilv~nK~D~~~~   78 (163)
                      +..+.|||  |||+++|...+..+++.+|++|+|+|+++ .+|+.+..|..+..+..    ..+ .|+++++||+|+.+.
T Consensus        83 ~~~~~iiD--tpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           83 KYFFTIID--APGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             SCEEEECC--CSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             CeEEEEEE--CCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            34566666  99999999999999999999999999998 67775443322222211    013 368999999998652


Q ss_pred             C------ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 031249           79 R------AVSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        79 ~------~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~  113 (163)
                      .      +...+++..++...+     ++++++||+++.|+.+++.
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1      112345666777666     5699999999999986654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.42  E-value=2.6e-14  Score=116.43  Aligned_cols=111  Identities=19%  Similarity=0.199  Sum_probs=78.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc-C
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-S   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v-~   82 (163)
                      +..+.|||  |||+++|..++..+++.+|++|||+|+++....... .++..+.   ..++|+++++||+|+.+.... .
T Consensus        51 g~~i~~iD--TPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v  124 (537)
T 3izy_P           51 GEKITFLD--TPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKV  124 (537)
T ss_dssp             SSCCBCEE--CSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSS
T ss_pred             CCEEEEEE--CCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHH
Confidence            45677777  999999999999999999999999999985444332 2223333   245899999999998642211 1


Q ss_pred             HHHHHHH---HHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           83 KEEGEQF---AKEN--GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        83 ~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ..+...+   +..+  .++++++||++|.|++++|+++...+.
T Consensus       125 ~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          125 KKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             SSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             HHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence            1111111   1112  246999999999999999999987653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.42  E-value=7.3e-13  Score=107.93  Aligned_cols=68  Identities=21%  Similarity=0.179  Sum_probs=54.0

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|||  |||+++|...+..+++.+|++|+|+|+++..+..... ++..+..   .++|+++|+||+|+..
T Consensus        81 ~~~i~liD--TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           81 DYLINLLD--TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             TEEEEEEC--CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT---TTCCEEEEEECTTSCC
T ss_pred             CEEEEEEE--CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEeCCCCcc
Confidence            44667777  9999999999999999999999999999866555543 3344433   3589999999999854

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.42  E-value=4.4e-14  Score=113.64  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR   79 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~   79 (163)
                      +..+.|||  |||+++|...+..+++.+|++|||+|+++.   .+|+...++.+.+......++| +++++||+|+.+..
T Consensus       120 ~~~~~iiD--tPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          120 HRRFSLLD--APGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             SEEEEECC--CCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred             CeEEEEEE--CCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence            44566776  999999999999999999999999999986   2343222333333222223476 99999999985411


Q ss_pred             ------ccCHHHHHHHHHHc-C------CeEEEEcCCCCCCHHHHHH
Q 031249           80 ------AVSKEEGEQFAKEN-G------LLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        80 ------~v~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~lf~  113 (163)
                            ....+++..++... +      ++++++||++|.|+.++|+
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~  244 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  244 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence                  01123456666665 4      4599999999999988763

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.41  E-value=2.7e-13  Score=108.13  Aligned_cols=106  Identities=17%  Similarity=0.087  Sum_probs=76.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc--c
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--V   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--v   81 (163)
                      +..+.|||  |||+++|...+..+++.+|++|+|+|+++.... ....++..+....  ..|+++++||+|+.+...  +
T Consensus       103 ~~~~~iiD--tpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          103 KRKFIIAD--TPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             SEEEEEEE--CCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHH
T ss_pred             CceEEEEE--CCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHH
Confidence            34567777  999999999899999999999999999885422 2333444443322  236999999999965211  1


Q ss_pred             --CHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHH
Q 031249           82 --SKEEGEQFAKENG-----LLFLEASARTAQNVEEAFIK  114 (163)
Q Consensus        82 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~~  114 (163)
                        ..++...+++.++     .+++++||++|.|+.++|..
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence              1344556677777     56999999999999986543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.40  E-value=1.9e-13  Score=108.08  Aligned_cols=98  Identities=16%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCcc-
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV-   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v-   81 (163)
                      +..+.|||  |||+++|...+..+++.+|++|+|+|+++.... ....++..+...   ++| +++++||+|+.+..+. 
T Consensus        74 ~~~~~iiD--tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~  147 (405)
T 2c78_A           74 KRHYSHVD--CPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELL  147 (405)
T ss_dssp             SCEEEEEE--CCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHH
T ss_pred             CeEEEEEE--CCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHH
Confidence            34677777  999999999999999999999999999886433 344566555543   477 8999999998642211 


Q ss_pred             --CHHHHHHHHHHcC-----CeEEEEcCCCCCC
Q 031249           82 --SKEEGEQFAKENG-----LLFLEASARTAQN  107 (163)
Q Consensus        82 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  107 (163)
                        ..+++..++...+     .+++++||+++.|
T Consensus       148 ~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          148 DLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence              1234556676665     5799999999877

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.40  E-value=4.3e-13  Score=100.84  Aligned_cols=105  Identities=7%  Similarity=-0.045  Sum_probs=73.7

Q ss_pred             cccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHH---HHH-Hhc-CCCCeEEEEeeC-CCCCCCCccCHHHH
Q 031249           13 LQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DAR-QHA-NPNMSIMLVGNK-CDLAHRRAVSKEEG   86 (163)
Q Consensus        13 Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~---~l~-~~~-~~~~p~ilv~nK-~D~~~~~~v~~~~~   86 (163)
                      |.+||++++++|+.|+.++|++|||+|++|.+.++ ....+.   .+. +.. ..+.|++|++|| .|++.  ..+..++
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI  269 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYL  269 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHH
Confidence            35789999999999999999999999999976443 222222   222 211 256899999997 58743  4666665


Q ss_pred             HHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           87 EQFAKE----NGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        87 ~~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .+...-    ....++.|||.+|+|+.+.++||++.+.
T Consensus       270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            544322    2234899999999999999999987763

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.40  E-value=4.3e-13  Score=105.82  Aligned_cols=108  Identities=17%  Similarity=0.100  Sum_probs=76.2

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCcc--
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--   81 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v--   81 (163)
                      ..+.|||  |||+++|...+..+++.+|++|+|+|+++....+. .+++..+...   ++| +++++||+|+.+..+.  
T Consensus        66 ~~~~iiD--tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~  139 (397)
T 1d2e_A           66 RHYAHTD--CPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVE  139 (397)
T ss_dssp             CEEEEEE--CSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHH
T ss_pred             eEEEEEE--CCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHH
Confidence            4567777  99999999988999999999999999998533222 2333444332   477 7899999998642211  


Q ss_pred             -CHHHHHHHHHHcC-----CeEEEEcCCCCCC----------HHHHHHHHHHH
Q 031249           82 -SKEEGEQFAKENG-----LLFLEASARTAQN----------VEEAFIKTAAK  118 (163)
Q Consensus        82 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~lf~~l~~~  118 (163)
                       ..+++..+++.++     ++++++||+++.|          +.++|+.|.+.
T Consensus       140 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          140 LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence             1245666777766     4799999998764          66666666543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.40  E-value=3.4e-12  Score=99.66  Aligned_cols=117  Identities=21%  Similarity=0.091  Sum_probs=82.4

Q ss_pred             ccceeeEeeecccch---------hhhhhchhhhccCCcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQ---------ESFRSITRSYYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~---------e~~~~~~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ++.++.+||  |+|.         +.|...+. .+..+|++++|+|++++.  .+..+..|.+.+......+.|+++|+|
T Consensus       224 ~g~~v~l~D--T~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N  300 (364)
T 2qtf_A          224 NNRKIMLVD--TVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN  300 (364)
T ss_dssp             TTEEEEEEE--CCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE
T ss_pred             CCEEEEEEe--CCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE
Confidence            456778888  9996         44554444 578999999999998876  556665566655554335689999999


Q ss_pred             CCCCCCCCccC-HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVS-KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        72 K~D~~~~~~v~-~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |+|+.+..... ...+..++...   +.+++++||+++.|++++++.|.+.+...
T Consensus       301 K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          301 KIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            99986532100 11233344544   23689999999999999999998876554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.38  E-value=3.4e-12  Score=101.86  Aligned_cols=114  Identities=17%  Similarity=0.089  Sum_probs=77.2

Q ss_pred             ccceeeEeeecccchhhhhhch------------hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            3 FSQESFFWSLLQAGQESFRSIT------------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~------------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      +|..+.+||  |||.+++..+.            ..+++.+|++++|+|+++..++.+. .+...+..   .+.|+++++
T Consensus       226 ~g~~~~l~D--t~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~  299 (439)
T 1mky_A          226 DGRKYVFVD--TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVF  299 (439)
T ss_dssp             TTEEEEESS--CSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEE
T ss_pred             CCEEEEEEE--CCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEE
Confidence            455677777  99986543321            3467889999999999886665542 23333333   358999999


Q ss_pred             eCCCCCCCCccCHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVSKEEGEQ-FAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        71 nK~D~~~~~~v~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ||+|+.+.+....++... +...    .+.+++++||++|.||+++|+.+.+.+...
T Consensus       300 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          300 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            999987654444444432 2232    356799999999999999999998876554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.36  E-value=2e-12  Score=91.41  Aligned_cols=75  Identities=17%  Similarity=0.278  Sum_probs=62.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccC----CcEEEEEEECC-ChHHHHHHHHHHHHHHHhc----CCCCeEEEEeeCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRG----AAGALLVYDIT-RRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCD   74 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~----ad~~i~v~d~~-~~~s~~~~~~~~~~l~~~~----~~~~p~ilv~nK~D   74 (163)
                      +..+.|||  |||++.+...+..+++.    +|++|||||++ +..++..+..|+..+....    ..+.|+++|+||+|
T Consensus        90 ~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  167 (193)
T 2ged_A           90 GSGVTLVD--FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE  167 (193)
T ss_dssp             CTTCSEEE--ETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred             CCeEEEEE--CCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchH
Confidence            45678888  99999999888888876    89999999999 8999999988888876542    24699999999999


Q ss_pred             CCCCCc
Q 031249           75 LAHRRA   80 (163)
Q Consensus        75 ~~~~~~   80 (163)
                      +.+...
T Consensus       168 l~~~~~  173 (193)
T 2ged_A          168 LFTARP  173 (193)
T ss_dssp             STTCCC
T ss_pred             hcCCCC
Confidence            976443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.36  E-value=2e-12  Score=98.43  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=74.2

Q ss_pred             eeeEeeecccchh---------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQE---------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e---------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      .+.+||  |||.+         .+......+++.+|++++|+|+++   +.....++.....  ..+.|+++++||+|+.
T Consensus        57 ~i~~iD--TpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           57 QAIYVD--TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNV  129 (301)
T ss_dssp             EEEEES--SSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTC
T ss_pred             eEEEEE--CcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccC
Confidence            445555  99987         344456778899999999999976   3233333333222  1358999999999986


Q ss_pred             CCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           77 HRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        77 ~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..+....+....+...+++ .++++||+++.|++++++.+...+
T Consensus       130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            5222223444556555676 599999999999999999987643

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.34  E-value=5.8e-14  Score=113.51  Aligned_cols=106  Identities=18%  Similarity=0.233  Sum_probs=75.7

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-   78 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-   78 (163)
                      .+..+.|||  |||+++|..++..++..+|++|+|+|+++   +++++.+    ..+..   .++|+++++||+|+.+. 
T Consensus        49 ~~~~i~~iD--TPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~  119 (501)
T 1zo1_I           49 ENGMITFLD--TPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEAD  119 (501)
T ss_dssp             TSSCCCEEC--CCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTC
T ss_pred             CCEEEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccC
Confidence            345677887  99999999999999999999999999988   3444332    23332   35899999999998642 


Q ss_pred             -CccCHH--HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q 031249           79 -RAVSKE--EGEQFAKENG--LLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        79 -~~v~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                       ..+..+  +...+...++  ++++++||+++.|++++|+++..
T Consensus       120 ~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          120 PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence             111100  0001112233  68999999999999999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.34  E-value=2.4e-12  Score=111.95  Aligned_cols=107  Identities=17%  Similarity=0.128  Sum_probs=77.3

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCcc--
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--   81 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v--   81 (163)
                      ..+.|||  |||+++|...+..+++.+|++|+|+|+++.... ...+++..+...   ++| +|+++||+|+.+..+.  
T Consensus       359 ~kI~IID--TPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le  432 (1289)
T 3avx_A          359 RHYAHVD--CPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLE  432 (1289)
T ss_dssp             CEEEEEE--CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHH
T ss_pred             EEEEEEE--CCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHH
Confidence            4567777  999999999889999999999999999885322 233445555443   377 7899999999652221  


Q ss_pred             -CHHHHHHHHHHcC-----CeEEEEcCCCC--------CCHHHHHHHHHH
Q 031249           82 -SKEEGEQFAKENG-----LLFLEASARTA--------QNVEEAFIKTAA  117 (163)
Q Consensus        82 -~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~lf~~l~~  117 (163)
                       ..+++..++...+     ++++++||+++        .||.++|+.|..
T Consensus       433 ~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          433 LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence             1245666777766     57999999999        346666666654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.32  E-value=9.8e-13  Score=108.86  Aligned_cols=107  Identities=14%  Similarity=0.077  Sum_probs=71.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHHHHHHHHHHHHHhcCCC-CeEEEEeeCCCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRR   79 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~-~p~ilv~nK~D~~~~~   79 (163)
                      +..+.|||  |||+++|...+..+++.+|++|+|+|+++..   +|....++...+......+ .|+|||+||+|+.+..
T Consensus       244 ~~~~~iiD--TPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          244 RANFTIVD--APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             SCEEEEEE--CCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred             CceEEEEE--CCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence            34677777  9999999999999999999999999998742   1111112222221111123 4699999999986532


Q ss_pred             ccC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q 031249           80 AVS----KEEGEQFAKENG-----LLFLEASARTAQNVEEAF  112 (163)
Q Consensus        80 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf  112 (163)
                      +..    ..++..++...+     ++++++||++|.||.++.
T Consensus       322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            222    223344444444     479999999999998763

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.29  E-value=1.2e-12  Score=105.01  Aligned_cols=102  Identities=19%  Similarity=0.130  Sum_probs=72.0

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHH---HHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLSSWLEDARQHANPNMS-IMLVGNKCDLAH   77 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~   77 (163)
                      ..+.|||  |||+++|...+..++..+|++|||+|+++..   +|+   ....++..+..   .++| +++++||+|+.+
T Consensus        85 ~~~~iiD--tPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 YQVTVID--APGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEEE--CCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             ceEEEEE--CCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence            4566666  9999999999999999999999999999753   332   22233333332   2354 999999999863


Q ss_pred             CCc----cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 031249           78 RRA----VSKEEGEQFAKENG-----LLFLEASARTAQNVEEA  111 (163)
Q Consensus        78 ~~~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  111 (163)
                      ...    ...+++..++...+     ++++++||+++.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            111    11234555666665     57999999999999755

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.28  E-value=3.4e-13  Score=105.19  Aligned_cols=112  Identities=14%  Similarity=0.229  Sum_probs=64.1

Q ss_pred             eeeEeeecccch-------hhhhhchh-------hhccCCcEE-----------EEEEECCC-hHHHHHHH-HHHHHHHH
Q 031249            6 ESFFWSLLQAGQ-------ESFRSITR-------SYYRGAAGA-----------LLVYDITR-RETFNHLS-SWLEDARQ   58 (163)
Q Consensus         6 ~~~l~d~Dt~G~-------e~~~~~~~-------~~~~~ad~~-----------i~v~d~~~-~~s~~~~~-~~~~~l~~   58 (163)
                      .+.+||  |||.       ++|..++.       .|++.++++           +++|++++ ..++..+. .+++.+  
T Consensus        96 ~l~i~D--TpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l--  171 (361)
T 2qag_A           96 RLTVVD--TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI--  171 (361)
T ss_dssp             EEEEEC----------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT--
T ss_pred             ceEEEE--eccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh--
Confidence            355555  9999       88888887       777766554           36666654 44455544 344433  


Q ss_pred             hcCCCCeEEEEeeCCCCCCCCccCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           59 HANPNMSIMLVGNKCDLAHRRAVSK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        59 ~~~~~~p~ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                        ..++|+|+|+||+|+.+.+++..  +++..++...+++++++||+++.+ ++.|.++.+.+.+...
T Consensus       172 --~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          172 --HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             --CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             --ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence              25689999999999976544433  456667777789999999999999 9999999988876554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.27  E-value=3.5e-12  Score=102.22  Aligned_cols=106  Identities=12%  Similarity=0.055  Sum_probs=72.9

Q ss_pred             ccceeeEeeecccc--------hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            3 FSQESFFWSLLQAG--------QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G--------~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+..++|||  |||        ++++...+..+++.+|++|||+|..+..+..  ..++..+.+.  .++|++||+||+|
T Consensus        69 ~~~~~~liD--T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~--~~~pvilV~NK~D  142 (456)
T 4dcu_A           69 LNYDFNLID--TGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLD  142 (456)
T ss_dssp             CSSCCEEEC--CCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT--CCSCEEEEEECC-
T ss_pred             CCceEEEEE--CCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH--cCCCEEEEEECcc
Confidence            356788888  999        8889999999999999999999987643322  2333333332  4689999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +.+..    .....+. ..++ .++++||+++.|+.++|+.+...+
T Consensus       143 ~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          143 NTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             ------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             chhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence            85421    1111111 2233 468999999999999999997755

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.27  E-value=1.7e-12  Score=98.04  Aligned_cols=113  Identities=11%  Similarity=0.006  Sum_probs=76.4

Q ss_pred             ceeeEeeecccchh-------------hhhhchhhhccCCcEEE-EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            5 QESFFWSLLQAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e-------------~~~~~~~~~~~~ad~~i-~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      ..+.|||  |||..             .+..++..|++.++.+| +|+|+++..+..+...+++.+.   ..+.|+++|+
T Consensus       125 ~~l~lvD--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~  199 (299)
T 2aka_B          125 LNLTLVD--LPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVI  199 (299)
T ss_dssp             CSEEEEE--CCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEE
T ss_pred             CCceEEe--CCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEE
Confidence            5677777  99953             56678888999999777 7999987554444334444442   2468999999


Q ss_pred             eCCCCCCCCccCHHHHHHHHHHc--C-CeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVSKEEGEQFAKEN--G-LLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        71 nK~D~~~~~~v~~~~~~~~~~~~--~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ||+|+.+......+.........  + .+++++||+++.|++++|+++.++..-.
T Consensus       200 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~  254 (299)
T 2aka_B          200 TKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF  254 (299)
T ss_dssp             ECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             EccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence            99998764432232222100011  2 3578899999999999999998754433

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.27  E-value=4.3e-11  Score=87.86  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=74.3

Q ss_pred             ccceeeEeeecccc-----------hhhhhhchhhhccCCcEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEE
Q 031249            3 FSQESFFWSLLQAG-----------QESFRSITRSYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLV   69 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G-----------~e~~~~~~~~~~~~ad~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ilv   69 (163)
                      .+..+.|||  |||           .+.+...+..+++++|++|+|+|+++...  ...+..+.+.+...  ...|+++|
T Consensus        76 ~~~~i~liD--TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv  151 (239)
T 3lxx_A           76 KETELVVVD--TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILI  151 (239)
T ss_dssp             TTEEEEEEE--CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEE
T ss_pred             CCceEEEEE--CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEE
Confidence            355778888  999           45666677778889999999999875332  22222233222221  23699999


Q ss_pred             eeCCCCCCCCccC------HHHHHHHHHHcCCeEEEEcCCCC-----CCHHHHHHHHHHHHH
Q 031249           70 GNKCDLAHRRAVS------KEEGEQFAKENGLLFLEASARTA-----QNVEEAFIKTAAKIL  120 (163)
Q Consensus        70 ~nK~D~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~lf~~l~~~~~  120 (163)
                      +||+|+.+...+.      .+....+++..+..++.+++..+     .+|.++|..+...+.
T Consensus       152 ~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          152 FTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             EECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            9999986644433      23567788888888888877644     577777777766553

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.26  E-value=5.7e-12  Score=93.61  Aligned_cols=114  Identities=12%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             cceeeEeeecccchhhhhh-----------chhhhccCCcEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            4 SQESFFWSLLQAGQESFRS-----------ITRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~-----------~~~~~~~~ad~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      +..+.|||  |||+..+..           ....+++.+|++|+|+|+++... ...+..++..+.... ...|+++++|
T Consensus        70 ~~~i~iiD--TpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~  146 (260)
T 2xtp_A           70 NREIVIID--TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFT  146 (260)
T ss_dssp             TEEEEEEE--CCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEE
T ss_pred             CCEEEEEE--CcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEE
Confidence            44677777  999876533           23347789999999999986222 122223333332111 1246666666


Q ss_pred             -CCCCCCCCccCH-------HHHHHHHHHcCCe---E--EEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           72 -KCDLAHRRAVSK-------EEGEQFAKENGLL---F--LEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        72 -K~D~~~~~~v~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                       |+|+... .+..       .++..++...+..   +  +++||+++.|++++|+++...+..
T Consensus       147 nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          147 HKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             CGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence             9998642 2221       2244456655533   2  788999999999999999988765

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.22  E-value=3.9e-11  Score=100.25  Aligned_cols=67  Identities=18%  Similarity=0.168  Sum_probs=52.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      +..++|||  |||+++|...+..+++.+|++++|+|+++..... ...++..+...   ++|+++++||+|+.
T Consensus        73 ~~~~nliD--TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           73 GHRVFLLD--APGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             TEEEEEEE--CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             CEEEEEEe--CCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence            34567777  9999999999999999999999999988754333 23455555443   48999999999985

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.20  E-value=7e-11  Score=92.31  Aligned_cols=96  Identities=26%  Similarity=0.328  Sum_probs=74.8

Q ss_pred             chhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH----HH
Q 031249           16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----AK   91 (163)
Q Consensus        16 G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~----~~   91 (163)
                      ..++|..+++.+++.+|++++|+|+++..     ..|...+.+.. .++|+++|+||+|+... ....++...+    ++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence            46889999999999999999999999853     34666666554 36899999999998653 3344444444    56


Q ss_pred             HcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 031249           92 ENGL---LFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        92 ~~~~---~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..++   +++++||+++.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999988654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.14  E-value=1.2e-11  Score=96.31  Aligned_cols=108  Identities=14%  Similarity=0.089  Sum_probs=76.5

Q ss_pred             ceeeEeeecccchhhh-------------hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            5 QESFFWSLLQAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ..+.|||  |||..++             ..+...|++++|++|+|+|..+.....  ..|+..+......+.|+++|+|
T Consensus       136 ~~l~lvD--tPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~n  211 (360)
T 3t34_A          136 VNLTLID--LPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLT  211 (360)
T ss_dssp             CSEEEEE--CCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEE
T ss_pred             CCeEEEE--CCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEe
Confidence            3567777  9998776             567888999999999999875533222  2344445444445689999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249           72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  116 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~  116 (163)
                      |+|+.+......+.+.......+..|++++++++.++++.+..+.
T Consensus       212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          212 KIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             CGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             CCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            999876555544444444445567799999999888877665543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.10  E-value=2.4e-10  Score=95.89  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=54.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|||  |||+.+|...+..+++.+|++|+|+|+++..++.....|. .+...   ++|+++++||+|+..
T Consensus        76 ~~~i~liD--TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~---~~p~ivviNKiD~~~  143 (691)
T 1dar_A           76 DHRINIID--TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY---KVPRIAFANKMDKTG  143 (691)
T ss_dssp             TEEEEEEC--CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECTTSTT
T ss_pred             CeEEEEEE--CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc---CCCEEEEEECCCccc
Confidence            44566776  9999999999999999999999999999877666554444 34333   589999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.10  E-value=5.8e-10  Score=90.90  Aligned_cols=68  Identities=19%  Similarity=0.137  Sum_probs=50.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|||  |||+++|...+..+++.+|++|+|+|+++..... ...++..+.   ..++|+++++||+|+..
T Consensus        81 ~~~i~liD--TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           81 DCLVNLLD--TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             TEEEEEEC--CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CeEEEEEE--CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            44566777  9999999998899999999999999998753221 222333332   24689999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.09  E-value=1.7e-12  Score=107.16  Aligned_cols=101  Identities=24%  Similarity=0.164  Sum_probs=57.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HH---HHHHHHHHHHHHhcCCCCe-EEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMS-IMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~   76 (163)
                      +..+.|||  |||+++|...+..+++.+|++|||+|+++..   .+   .....++..+...   ++| +|||+||+|+.
T Consensus       254 ~~~i~iiD--TPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~  328 (592)
T 3mca_A          254 KKIYEIGD--APGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM  328 (592)
T ss_dssp             -----CCE--EESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred             CeEEEEEE--CCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence            34566666  9999999999999999999999999998532   11   1111222233332   355 99999999986


Q ss_pred             CCCccC----HHHHHHHH-HHcCC-----eEEEEcCCCCCCHH
Q 031249           77 HRRAVS----KEEGEQFA-KENGL-----LFLEASARTAQNVE  109 (163)
Q Consensus        77 ~~~~v~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  109 (163)
                      +.....    ..++..++ ...++     +++++||++|.||.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            421111    12333344 44455     69999999999998

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.08  E-value=5.3e-10  Score=88.59  Aligned_cols=114  Identities=15%  Similarity=0.076  Sum_probs=82.1

Q ss_pred             ceeeEeeecccchh----hhhhchhhh---ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCC
Q 031249            5 QESFFWSLLQAGQE----SFRSITRSY---YRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDL   75 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e----~~~~~~~~~---~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~   75 (163)
                      ..+.+||  |+|..    .+..+...+   +..++.+++++|++ ...+..+..+.+++.....  ...|.+|++||.|+
T Consensus       205 ~~~~l~D--tpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl  281 (416)
T 1udx_A          205 ERFTLAD--IPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL  281 (416)
T ss_dssp             CEEEEEE--CCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTT
T ss_pred             ceEEEEe--ccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCCh
Confidence            4567777  89963    233333333   45799999999998 5667777777777765431  24799999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ...  ...++....+...+.+++++||+++.|+++++++|.+.+.+..
T Consensus       282 ~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          282 LEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             SCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             hhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence            543  2234444555556788999999999999999999998886543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.07  E-value=1.3e-10  Score=97.43  Aligned_cols=112  Identities=10%  Similarity=0.089  Sum_probs=78.4

Q ss_pred             ceeeEeeecccchhhh---hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249            5 QESFFWSLLQAGQESF---RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~---~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ..+.|||  |||....   ...+..+++++|++|||+|+++..+..+...|...+..   .+.|+++|+||+|+.....+
T Consensus       174 ~~l~LiD--TPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~  248 (695)
T 2j69_A          174 KGIEIVD--SPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLI  248 (695)
T ss_dssp             TTEEEEE--CCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCS
T ss_pred             CCeEEEE--CCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECccccccccc
Confidence            3577777  9997663   34667899999999999999988777776555544432   35789999999998653312


Q ss_pred             CHH----------HHHH-----HHHH--------cCCeEEEEcCC--------------CCCCHHHHHHHHHHHHHH
Q 031249           82 SKE----------EGEQ-----FAKE--------NGLLFLEASAR--------------TAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~i~~lf~~l~~~~~~  121 (163)
                      ..+          ....     +...        ...+++++||+              ++.|+++++..+.+.+..
T Consensus       249 ~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          249 DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence            111          1111     1111        12358999999              999999999999887654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.07  E-value=3.4e-11  Score=90.36  Aligned_cols=84  Identities=10%  Similarity=0.054  Sum_probs=46.3

Q ss_pred             CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249           31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLEASARTAQNV  108 (163)
Q Consensus        31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~~~i  108 (163)
                      +|+++++++.+.......-..+++.+..    .+|+++|+||+|+....++.  .+.+...+...+++++++|+.++.++
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~  191 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE  191 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence            7899999976652211122234454433    58999999999985432221  12344555667899999999999999


Q ss_pred             HHHHHHHHHH
Q 031249          109 EEAFIKTAAK  118 (163)
Q Consensus       109 ~~lf~~l~~~  118 (163)
                      ++++++|...
T Consensus       192 ~~l~~~l~~~  201 (274)
T 3t5d_A          192 NKLVKKIKDR  201 (274)
T ss_dssp             ---CHHHHHT
T ss_pred             HHHHHHHhcC
Confidence            9998887653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.05  E-value=3.1e-10  Score=88.67  Aligned_cols=97  Identities=24%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             cchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH----H
Q 031249           15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----A   90 (163)
Q Consensus        15 ~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~----~   90 (163)
                      ..+++|..++..+++.++++++|+|+.+..+     .|...+.+.. .+.|+++|+||+|+... ....+....+    +
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMA  128 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHH
Confidence            3588999999999999999999999998763     3444444443 36899999999998653 3334444444    4


Q ss_pred             HHcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 031249           91 KENGL---LFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        91 ~~~~~---~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      +..++   +++.+||+++.|++++++.+.+.
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            55676   68999999999999999988654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.03  E-value=1.5e-09  Score=91.13  Aligned_cols=67  Identities=16%  Similarity=0.101  Sum_probs=51.9

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      ..+.|||  |||+.+|...+..+++.+|++|+|+|+++........ ++..+..   .++|+++++||+|+..
T Consensus        82 ~~i~liD--TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           82 HRINIID--TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eeEEEEe--CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH---cCCCEEEEEeCCCccc
Confidence            4556666  9999999999999999999999999999875544433 3333333   3589999999999854

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.03  E-value=3.1e-10  Score=86.33  Aligned_cols=111  Identities=11%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             ceeeEeeecccchhh-------------hhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            5 QESFFWSLLQAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~-------------~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      ..+.|||  |||..+             +..++..+++++|++|+|+|..+.. .......++..+.   ..+.|+++|+
T Consensus       131 ~~~~lvD--TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~  205 (315)
T 1jwy_B          131 VNLTLVD--LPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVI  205 (315)
T ss_dssp             CSEEEEE--CCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEE
T ss_pred             CCcEEEE--CCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEE
Confidence            3566777  999643             5667888999999999999974322 1111112333332   2468999999


Q ss_pred             eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCC------CCCHHHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASART------AQNVEEAFIKTAAKIL  120 (163)
Q Consensus        71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~lf~~l~~~~~  120 (163)
                      ||+|+.+......+.+.......+..++++++..      +.|+.+++..+...+.
T Consensus       206 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          206 TKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             ECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            9999876443222222211111225577776654      6788888887766654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.01  E-value=1.6e-09  Score=90.89  Aligned_cols=68  Identities=18%  Similarity=0.179  Sum_probs=54.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|||  |||+.+|...+..+++.+|++|+|+|+++..++.....| ..+...   ++|+++|+||+|+..
T Consensus        74 ~~~i~liD--TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           74 GHRVNIID--TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             TEEEEEEC--CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSTT
T ss_pred             CeeEEEEE--CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc---CCCEEEEEECCCccc
Confidence            44566776  999999999999999999999999999987666654444 344443   489999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.97  E-value=1.6e-09  Score=80.14  Aligned_cols=108  Identities=13%  Similarity=0.033  Sum_probs=66.4

Q ss_pred             eeeEeeecccchhhhhhchh------hhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITR------SYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~------~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      .+.|||  |||+..+..+..      ..+.+ +++++++|....   ..+.....+.......  .+.|+++|+||+|+.
T Consensus       110 d~iiiD--tpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~  184 (262)
T 1yrb_A          110 DYVLID--TPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLL  184 (262)
T ss_dssp             SEEEEE--CCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGC
T ss_pred             CEEEEe--CCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEeccccc
Confidence            456666  999877654322      24566 888999887543   2332222211111111  248999999999985


Q ss_pred             CCCccCHHHHHHH----------------------------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           77 HRRAVSKEEGEQF----------------------------AKENG--LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        77 ~~~~v~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ...++  +++..+                            +..++  .+++++||+++.|++++++++.+.+.
T Consensus       185 ~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          185 SEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             CHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            43211  111111                            23333  47999999999999999999987664

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.96  E-value=2.4e-09  Score=76.44  Aligned_cols=109  Identities=14%  Similarity=0.075  Sum_probs=72.4

Q ss_pred             eeeEeeecccchh----------hhhhchhhhc---cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            6 ESFFWSLLQAGQE----------SFRSITRSYY---RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         6 ~~~l~d~Dt~G~e----------~~~~~~~~~~---~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      .+.+||  |||..          ++......++   +.++++++++|+++..++.+. .....+..   .+.|+++++||
T Consensus        73 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK  146 (210)
T 1pui_A           73 GKRLVD--LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTK  146 (210)
T ss_dssp             TEEEEE--CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEEC
T ss_pred             CEEEEE--CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEec
Confidence            467777  99973          3444444555   578999999999886544321 11222222   35899999999


Q ss_pred             CCCCCCCc--cCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           73 CDLAHRRA--VSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        73 ~D~~~~~~--v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +|+....+  .....+..++...+  +.++++||+++.+++++++.|.+.+.
T Consensus       147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            99854221  11244555555554  45889999999999999999877653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.95  E-value=1.2e-09  Score=81.34  Aligned_cols=79  Identities=11%  Similarity=0.007  Sum_probs=55.3

Q ss_pred             ccceeeEeeecccchhhhhhchhhhcc---------CCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCC--CeEEEEe
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYR---------GAAGALLVYDITRRETFNHL-SSWLEDARQHANPN--MSIMLVG   70 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~---------~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ilv~   70 (163)
                      .+..+.|||  |||+++|..+...+++         ++|++|||++++... +... ..|++.+.......  .|+++|+
T Consensus        82 ~~~~l~liD--TpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~  158 (262)
T 3def_A           82 GGFTINIID--TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVL  158 (262)
T ss_dssp             TTEEEEEEE--CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred             CCeeEEEEE--CCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEE
Confidence            345677888  9999888776655554         889999999987654 4333 45777776654322  4999999


Q ss_pred             eCCCCCCCCccCHH
Q 031249           71 NKCDLAHRRAVSKE   84 (163)
Q Consensus        71 nK~D~~~~~~v~~~   84 (163)
                      ||+|+...+....+
T Consensus       159 nK~Dl~~~~~~~~e  172 (262)
T 3def_A          159 THAQFSPPDELSYE  172 (262)
T ss_dssp             ECTTCCCSTTCCHH
T ss_pred             eCcccCCCCCccHH
Confidence            99998654444433

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.94  E-value=1.3e-09  Score=78.68  Aligned_cols=105  Identities=15%  Similarity=0.071  Sum_probs=67.8

Q ss_pred             ceeeEeeecccchhhhhhchhhh-ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSY-YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~-~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..+.|||  |+|+-.    .+.+ ...++.+++|+|++.....  ...+..   ..   +.|+++|+||+|+.+......
T Consensus       109 ~d~iiid--t~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~  174 (221)
T 2wsm_A          109 CDLLLIE--NVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADV  174 (221)
T ss_dssp             CSEEEEE--EEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCH
T ss_pred             CCEEEEe--CCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHH
Confidence            3456666  888511    1111 2367899999998765321  111111   11   268999999999854323456


Q ss_pred             HHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        84 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +++...+...  +.+++++||+++.|++++|++|.+.+....
T Consensus       175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            6666666554  467999999999999999999988775543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.92  E-value=3.5e-09  Score=79.88  Aligned_cols=95  Identities=14%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             cchh-hhhhchhhhccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH---
Q 031249           15 AGQE-SFRSITRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ---   88 (163)
Q Consensus        15 ~G~e-~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~---   88 (163)
                      ||+. +....+...++.+|++++|+|+.++.+..  .+..++        .++|+++|+||+|+.+     .+....   
T Consensus         7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~-----~~~~~~~~~   73 (282)
T 1puj_A            7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKAD-----AAVTQQWKE   73 (282)
T ss_dssp             --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSC-----HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCC-----HHHHHHHHH
Confidence            8875 45566777899999999999999987764  233332        3589999999999954     223333   


Q ss_pred             HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           89 FAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +.+..+++++++||.++.|+.+++..+.+.+...
T Consensus        74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            3344578899999999999999999887766544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.89  E-value=1.7e-10  Score=87.78  Aligned_cols=109  Identities=12%  Similarity=0.121  Sum_probs=61.0

Q ss_pred             eeeEeeecccch-------hhhhhchh-------hhccCC-------------cEEEEEEECCChHHHHHHHHHHHHHHH
Q 031249            6 ESFFWSLLQAGQ-------ESFRSITR-------SYYRGA-------------AGALLVYDITRRETFNHLSSWLEDARQ   58 (163)
Q Consensus         6 ~~~l~d~Dt~G~-------e~~~~~~~-------~~~~~a-------------d~~i~v~d~~~~~s~~~~~~~~~~l~~   58 (163)
                      .+.+||  |+|.       +++..++.       .+++..             ++++|+.+.+.. ++..+.  ++.+.+
T Consensus        77 ~ltv~D--t~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~  151 (301)
T 2qnr_A           77 RLTVVD--TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKA  151 (301)
T ss_dssp             EEEEEE--EC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHH
T ss_pred             Ccchhh--hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHH
Confidence            455666  9998       66766665       555543             335555554321 222222  122332


Q ss_pred             hcCCCCeEEEEeeCCCCCCCCcc--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           59 HANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        59 ~~~~~~p~ilv~nK~D~~~~~~v--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .. ...|+++|+||+|+.+.+++  ..+++..+++.++++++++||+++ +++++|.++.+.+.+
T Consensus       152 l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          152 IH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            22 35799999999998654333  235677888899999999999999 999999999988754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.88  E-value=6.3e-10  Score=86.43  Aligned_cols=106  Identities=11%  Similarity=0.034  Sum_probs=68.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-   82 (163)
                      +..+.|||  |||...   .....+..+|++|+|+|....+.+..+..   .+     ...|+++|+||+|+.+..... 
T Consensus       171 ~~~~iiiD--TpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          171 GFDVILIE--TVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             TCCEEEEE--ECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEe--CCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCcChhHHHH
Confidence            44566776  999432   22344689999999999876544332211   01     236899999999985421111 


Q ss_pred             -HHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           83 -KEEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        83 -~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                       ..+.......       ++.+++++||+++.|++++++++.+.+...
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence             1112222111       256799999999999999999998887653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.75  E-value=4.5e-09  Score=82.85  Aligned_cols=49  Identities=18%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 031249           63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~  113 (163)
                      .+|+++++||.|+..  ....+.........+.+++++||+.+.++.++++
T Consensus       214 ~kP~i~v~NK~D~~~--~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAAS--DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSC--HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccc--hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            389999999999752  1111222222222367899999999888876543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.75  E-value=1.6e-08  Score=75.52  Aligned_cols=78  Identities=8%  Similarity=0.003  Sum_probs=51.6

Q ss_pred             cceeeEeeecccchhhhhhchh-------hh--ccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCC--CeEEEEee
Q 031249            4 SQESFFWSLLQAGQESFRSITR-------SY--YRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPN--MSIMLVGN   71 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~-------~~--~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ilv~n   71 (163)
                      +..+.|||  |||.+++..+..       .+  .+.+|++|||+|++.. ++... ..|++.+......+  .|+++|+|
T Consensus        86 ~~~l~iiD--TpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~n  162 (270)
T 1h65_A           86 GFTLNIID--TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALT  162 (270)
T ss_dssp             TEEEEEEE--CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred             CeEEEEEE--CCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence            34577777  999877654322       22  3479999999998763 34332 36777776654322  69999999


Q ss_pred             CCCCCCCCccCHH
Q 031249           72 KCDLAHRRAVSKE   84 (163)
Q Consensus        72 K~D~~~~~~v~~~   84 (163)
                      |+|+........+
T Consensus       163 K~Dl~~~~~~~~~  175 (270)
T 1h65_A          163 HAQFSPPDGLPYD  175 (270)
T ss_dssp             CCSCCCGGGCCHH
T ss_pred             CcccCCcCCCCHH
Confidence            9998654443433

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.73  E-value=6.2e-08  Score=79.30  Aligned_cols=68  Identities=19%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|  +||||+-.|..-....++-+|++|+|+|+...-.-+. ...++...++   ++|+++++||+|...
T Consensus        99 ~~~iNl--IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A           99 DRVVNL--LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             TEEEEE--ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred             CEEEEE--EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHh---CCceEEEEecccchh
Confidence            444455  4599999999999999999999999999987543332 2334555554   489999999999753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.69  E-value=3.6e-08  Score=76.17  Aligned_cols=104  Identities=12%  Similarity=-0.000  Sum_probs=64.1

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.|||  |||...+..   ...+.+|++++|+|++....+..+..   ...     +.|.++|+||+|+........
T Consensus       148 ~~~i~liD--TpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          148 GYDVVIVE--TVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TCSEEEEE--EECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHH
T ss_pred             CCCEEEEe--CCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHH
Confidence            44667777  999655432   24689999999999876543221111   111     257899999999854211110


Q ss_pred             --HHHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           84 --EEGEQFAKEN-------GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        84 --~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                        ++........       ..+++++||+++.|+++++++|.+.+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence              1222222222       346899999999999999999988765

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.69  E-value=3.8e-09  Score=81.92  Aligned_cols=109  Identities=12%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             ceeeEeeecccch-------------hhhhhchhhhccCCcEEEE-EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249            5 QESFFWSLLQAGQ-------------ESFRSITRSYYRGAAGALL-VYDITRRETFNHLSSWLEDARQHANPNMSIMLVG   70 (163)
Q Consensus         5 ~~~~l~d~Dt~G~-------------e~~~~~~~~~~~~ad~~i~-v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~   70 (163)
                      ..+.|||  |||.             +++..++..|++.++.+|+ |.+++....-.+...+++.   ....+.|+++|+
T Consensus       130 ~~l~lvD--TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~---~~~~~~~~i~V~  204 (353)
T 2x2e_A          130 LNLTLVD--LPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKE---VDPQGQRTIGVI  204 (353)
T ss_dssp             CSEEEEE--CCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHH---HCTTCTTEEEEE
T ss_pred             CCcEEEE--CCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHH---hCcCCCceEEEe
Confidence            4567777  9995             3567788888877765555 4555542221222223333   333568999999


Q ss_pred             eCCCCCCCCccCHHHHHH--HHHHcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           71 NKCDLAHRRAVSKEEGEQ--FAKENG-LLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        71 nK~D~~~~~~v~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ||+|+.+...........  +....+ .+++++||+++.|++++++.+..+
T Consensus       205 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          205 TKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             ECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             ccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            999986543322221110  000112 246789999999999999999773

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.68  E-value=5.5e-09  Score=82.81  Aligned_cols=88  Identities=10%  Similarity=0.094  Sum_probs=47.6

Q ss_pred             hhccCCcEEEEEEECCCh-HHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--HHHHHHHHHcCCeEEEEc
Q 031249           26 SYYRGAAGALLVYDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQFAKENGLLFLEAS  101 (163)
Q Consensus        26 ~~~~~ad~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~S  101 (163)
                      .+++++++.+++|..... .++..+. .|++.+.    .++|+|+|+||+|+...+++..  .++...+...+++++++|
T Consensus       132 al~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~s  207 (418)
T 2qag_C          132 RQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP  207 (418)
T ss_dssp             CCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             HhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCC
Confidence            355666665555554432 2344443 4666663    2589999999999866555543  567777888899999999


Q ss_pred             CCCCCCHHHHHHHHHH
Q 031249          102 ARTAQNVEEAFIKTAA  117 (163)
Q Consensus       102 a~~~~~i~~lf~~l~~  117 (163)
                      ++++.++.++|..+..
T Consensus       208 a~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          208 ETDDEEENKLVKKIKD  223 (418)
T ss_dssp             ----------------
T ss_pred             CCCCcCHHHHHHHHHh
Confidence            9999999987776654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.67  E-value=1.4e-08  Score=86.83  Aligned_cols=66  Identities=23%  Similarity=0.163  Sum_probs=53.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ..++|||  |||+.+|...+..+++.+|++|+|+|+++..++.....|.. +..   .++|+++++||+|+.
T Consensus        98 ~~i~liD--TPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           98 FLINLID--SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEC--CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCEEEEEEECHHHH
T ss_pred             ceEEEEE--CcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cCCCeEEEEECCCcc
Confidence            3455555  99999999999999999999999999999877776544443 333   358999999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.57  E-value=4.5e-07  Score=70.23  Aligned_cols=104  Identities=10%  Similarity=0.015  Sum_probs=61.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.|+|  |+|....   .......+|.+++|+|+........+..   .+     -..|.++|+||+|+.+.... .
T Consensus       166 ~~~~iliD--T~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~  231 (349)
T 2www_A          166 GYDIILIE--TVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-R  231 (349)
T ss_dssp             TCSEEEEE--CCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-H
T ss_pred             CCCEEEEE--CCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-H
Confidence            34556666  9995321   2345679999999999986543221111   11     13578999999998431110 0


Q ss_pred             HHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        84 ~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .....+..          .+..+++.+||+++.|+++++++|.+.+..
T Consensus       232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            11112211          124568999999999999999999887644

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.53  E-value=1.3e-07  Score=78.70  Aligned_cols=68  Identities=13%  Similarity=0.112  Sum_probs=51.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH   77 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~   77 (163)
                      +..+.|.|  |||+..|..-....++-+|++|+|+|+...-.-+ ....++...++.   +|.++++||+|...
T Consensus        66 ~~~iNlID--TPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~~---lp~i~~INKmDr~~  133 (638)
T 3j25_A           66 NTKVNIID--TPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKMG---IPTIFFINKIDQNG  133 (638)
T ss_dssp             SCBCCCEE--CCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHHT---CSCEECCEECCSSS
T ss_pred             CEEEEEEE--CCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHcC---CCeEEEEecccccc
Confidence            44555555  9999999999999999999999999998753222 234455555554   88999999999753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.46  E-value=9.6e-08  Score=71.22  Aligned_cols=92  Identities=12%  Similarity=0.067  Sum_probs=61.4

Q ss_pred             cchhhhh-hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249           15 AGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN   93 (163)
Q Consensus        15 ~G~e~~~-~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~   93 (163)
                      ||+.... ..+...++++|++|+|+|+.++.+.....  +. +.     ++|.++|+||+|+.+...  .+....+.+..
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~~   74 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKKQ   74 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHHc
Confidence            8876543 35677889999999999999887654310  11 11     589999999999954211  12223344455


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           94 GLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        94 ~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ++++ .+||.++.|+++++..+..
T Consensus        75 g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           75 GKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             CCeE-EEECCCCcCHHHHHHHHHH
Confidence            7888 9999999999998877643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.45  E-value=1e-07  Score=78.07  Aligned_cols=68  Identities=21%  Similarity=0.237  Sum_probs=51.4

Q ss_pred             eeeEeeecccchhh-----------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            6 ESFFWSLLQAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      .+.|||  |||...           |..++..+++.+|++|+|+|+++.........+++.+..   .+.|+++|+||+|
T Consensus       155 ~l~lID--TPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~D  229 (550)
T 2qpt_A          155 SISIID--TPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKAD  229 (550)
T ss_dssp             HCEEEE--CCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGG
T ss_pred             CEEEEE--CcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCC
Confidence            466676  999764           567778889999999999999875444445566666643   3479999999999


Q ss_pred             CCCC
Q 031249           75 LAHR   78 (163)
Q Consensus        75 ~~~~   78 (163)
                      +...
T Consensus       230 l~~~  233 (550)
T 2qpt_A          230 MVET  233 (550)
T ss_dssp             GSCH
T ss_pred             ccCH
Confidence            8653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.37  E-value=1.1e-07  Score=80.39  Aligned_cols=105  Identities=12%  Similarity=0.071  Sum_probs=67.2

Q ss_pred             Eeeecccchh-------------hhhhchhhhc-cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            9 FWSLLQAGQE-------------SFRSITRSYY-RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         9 l~d~Dt~G~e-------------~~~~~~~~~~-~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +..+||||.-             .+..+...|+ ..+|++++|+|++....-.+...++..+.   ..+.|+++|+||+|
T Consensus       152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKiD  228 (772)
T 3zvr_A          152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLD  228 (772)
T ss_dssp             EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECTT
T ss_pred             eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCcc
Confidence            4444599932             3445566666 57999999999986433333223344443   24589999999999


Q ss_pred             CCCCCccCHHHHHHHHHH----cC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKE----NG-LLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      +.+....... ... .+.    .+ .+++.+||+++.|++++++.+...
T Consensus       229 lv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          229 LMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             SSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             cCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            8764433222 111 011    12 246788999999999999988764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.36  E-value=8.7e-06  Score=63.31  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=31.0

Q ss_pred             CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCC
Q 031249           63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  104 (163)
Q Consensus        63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  104 (163)
                      .+|+++++|+.|..-........+..++...+.+++++||+.
T Consensus       199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            489999999998642122335667778888889999999753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.30  E-value=3.9e-06  Score=70.66  Aligned_cols=67  Identities=16%  Similarity=0.076  Sum_probs=51.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      .+.|..+||||+-.|..-....++-+|++|+|+|+...-..+ ....+++..++.   +|.++++||+|..
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~~~---lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANKYG---VPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHHT---CCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHHcC---CCeEEEEcccccc
Confidence            355556669999999999999999999999999998753333 233445555544   8999999999974

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.29  E-value=1.1e-06  Score=68.53  Aligned_cols=52  Identities=19%  Similarity=0.124  Sum_probs=38.1

Q ss_pred             CCeEEEEeeCCCC--CCC-CccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 031249           63 NMSIMLVGNKCDL--AHR-RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  114 (163)
Q Consensus        63 ~~p~ilv~nK~D~--~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~  114 (163)
                      .+|+++++||.|.  .+. +....+.+..+++..+.+++++||+...++.+++..
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE  255 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence            3799999999974  221 123456777888888899999999987766666554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.28  E-value=1.9e-07  Score=71.18  Aligned_cols=93  Identities=13%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             hhhhhchhhhccCCcEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--CHHHHHHHHHHcC
Q 031249           18 ESFRSITRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENG   94 (163)
Q Consensus        18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~~~~~~~~~~~~~   94 (163)
                      +|...+.+..+.++|.+++|+|+.++.. ...+..++.....   .++|.+||+||+|+.++...  ..+.........|
T Consensus        74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g  150 (307)
T 1t9h_A           74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG  150 (307)
T ss_dssp             CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC
Confidence            4555577778999999999999986543 3444444444333   45899999999999653210  0123333444568


Q ss_pred             CeEEEEcCCCCCCHHHHHH
Q 031249           95 LLFLEASARTAQNVEEAFI  113 (163)
Q Consensus        95 ~~~~~~Sa~~~~~i~~lf~  113 (163)
                      ++++.+||.++.|+++++.
T Consensus       151 ~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          151 YDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             CCEEECCHHHHTTCTTTGG
T ss_pred             CeEEEEecCCCCCHHHHHh
Confidence            8999999988877665443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.25  E-value=8.8e-07  Score=63.80  Aligned_cols=58  Identities=19%  Similarity=0.119  Sum_probs=46.6

Q ss_pred             CeEEEEeeCCCCCCCCccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .|.++|+||+|+.+...+..+++..++...  +.+++++||+++.|++++|+++.+.+..
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            678999999998653335667777777654  5689999999999999999999887643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.20  E-value=3.5e-06  Score=64.94  Aligned_cols=104  Identities=7%  Similarity=0.021  Sum_probs=60.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +.++.|+|  |+|..+-.   ......+|.+++|+|....+..+.+..   .+..     .|.++++||.|+........
T Consensus       147 ~~~~iliD--T~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~~-----~~~ivvlNK~Dl~~~~~~s~  213 (337)
T 2qm8_A          147 GFDVILVE--TVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIFE-----LADMIAVNKADDGDGERRAS  213 (337)
T ss_dssp             TCCEEEEE--ECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THHH-----HCSEEEEECCSTTCCHHHHH
T ss_pred             CCCEEEEE--CCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH---HHhc-----cccEEEEEchhccCchhHHH
Confidence            44556666  99964321   234578999999999865432211111   1111     35577789999743222111


Q ss_pred             HHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        84 ~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .....+...          +..+++.+||+++.|++++++.|.+...
T Consensus       214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            122222221          1356899999999999999999987654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.12  E-value=8.1e-06  Score=63.39  Aligned_cols=83  Identities=16%  Similarity=0.133  Sum_probs=56.7

Q ss_pred             hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH---HHHcCCeEEEEcCC
Q 031249           27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF---AKENGLLFLEASAR  103 (163)
Q Consensus        27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~---~~~~~~~~~~~Sa~  103 (163)
                      .+.++|.+++|.+..-..+...+..++......   ++|.+||+||+|+.++..  .+....+   ....|++++.+|+.
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSH  201 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecC
Confidence            368999999998765333445555555554443   478899999999965321  1113333   33568899999999


Q ss_pred             CCCCHHHHHHH
Q 031249          104 TAQNVEEAFIK  114 (163)
Q Consensus       104 ~~~~i~~lf~~  114 (163)
                      ++.|++++...
T Consensus       202 ~~~gl~~L~~~  212 (358)
T 2rcn_A          202 TQDGLKPLEEA  212 (358)
T ss_dssp             TTBTHHHHHHH
T ss_pred             CCcCHHHHHHh
Confidence            99999887764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.0027  Score=49.52  Aligned_cols=90  Identities=8%  Similarity=-0.029  Sum_probs=55.7

Q ss_pred             ccceeeEeeecccchhhhh----hc---hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031249            3 FSQESFFWSLLQAGQESFR----SI---TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKC   73 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~----~~---~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~   73 (163)
                      .+.+++|.|  |||.-+-.    .+   .-..++.+|++++|+|+.++.  .+...+..++.....  ...|.+++.||.
T Consensus       117 ~~~~i~l~D--~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~  192 (376)
T 4a9a_A          117 KGAKIQMLD--LPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKK  192 (376)
T ss_dssp             TTEEEEEEE--CGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEEC
T ss_pred             CCcEEEEEe--CCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHh
Confidence            456677776  99953211    12   223568999999999999863  333333344433221  357888999999


Q ss_pred             CCCC--------CCccCHHHHHHHHHHcCCe
Q 031249           74 DLAH--------RRAVSKEEGEQFAKENGLL   96 (163)
Q Consensus        74 D~~~--------~~~v~~~~~~~~~~~~~~~   96 (163)
                      |...        ......++...+...+.+.
T Consensus       193 d~~gi~i~~~~~~~~l~~eeik~il~~~~lt  223 (376)
T 4a9a_A          193 EKGGISITNTVPLTHLGNDEIRAVMSEYRIN  223 (376)
T ss_dssp             SSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred             hhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence            9632        1235567777777777654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.91  E-value=0.0011  Score=53.58  Aligned_cols=101  Identities=10%  Similarity=0.015  Sum_probs=59.7

Q ss_pred             ceeeEeeecccchhhhh-hchhh---h--ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCC
Q 031249            5 QESFFWSLLQAGQESFR-SITRS---Y--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAH   77 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~-~~~~~---~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ilv~nK~D~~~   77 (163)
                      ..+.|+|  |||..... .++..   .  +..+|.++||+|+.....   .......+.+.    .|+ ++|+||.|...
T Consensus       184 ~DvvIID--TpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~~----~~i~gvVlNK~D~~~  254 (504)
T 2j37_W          184 FEIIIVD--TSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKDK----VDVASVIVTKLDGHA  254 (504)
T ss_dssp             CCEEEEE--ECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHHH----HCCCCEEEECTTSCC
T ss_pred             CcEEEEe--CCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHhh----cCceEEEEeCCcccc
Confidence            3455665  99965321 11111   1  237899999999977543   12223334332    465 88999999754


Q ss_pred             CCccCHHHHHHHHHHcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 031249           78 RRAVSKEEGEQFAKENGLLF------------------LEASARTAQN-VEEAFIKTAAK  118 (163)
Q Consensus        78 ~~~v~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~lf~~l~~~  118 (163)
                      ...    .+..+....+.++                  ..+|+..|.| +.++++++.+.
T Consensus       255 ~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          255 KGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             chH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            221    1223344555543                  3358888888 98888888655

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.06  E-value=0.0034  Score=49.26  Aligned_cols=38  Identities=11%  Similarity=-0.116  Sum_probs=22.8

Q ss_pred             eeeEeeecccchhhhhh-------chhhhccCCcEEEEEEECCChHH
Q 031249            6 ESFFWSLLQAGQESFRS-------ITRSYYRGAAGALLVYDITRRET   45 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~-------~~~~~~~~ad~~i~v~d~~~~~s   45 (163)
                      .++|||  |||..++.+       .+..+++++|++++|+|+.+..+
T Consensus        87 ~i~lvD--tpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           87 FLNVVD--IAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             EEEEEE--CCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             ccEEEE--CCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            467777  999887654       45678899999999999976433

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.68  E-value=0.1  Score=40.82  Aligned_cols=42  Identities=10%  Similarity=0.078  Sum_probs=29.3

Q ss_pred             CCeEEEEeeCCCCC-C-CCccCHHHHHHHHHHcC--CeEEEEcCCC
Q 031249           63 NMSIMLVGNKCDLA-H-RRAVSKEEGEQFAKENG--LLFLEASART  104 (163)
Q Consensus        63 ~~p~ilv~nK~D~~-~-~~~v~~~~~~~~~~~~~--~~~~~~Sa~~  104 (163)
                      .+|+++++|+.|.. . ...-..+.+..++...+  .+++.+||..
T Consensus       224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~  269 (392)
T 1ni3_A          224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF  269 (392)
T ss_dssp             GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence            48999999998831 0 11223566777777665  7899999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.37  E-value=0.027  Score=39.27  Aligned_cols=81  Identities=7%  Similarity=-0.085  Sum_probs=50.9

Q ss_pred             eeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249           10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKEEGE   87 (163)
Q Consensus        10 ~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ilv~nK~D~~~~~~v~~~~~~   87 (163)
                      ..+|||+..  .......+..+|.+|++...+...  ..+..+++.+.+..  .+..++.+|.|+.+...  . ...+..
T Consensus        79 viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~~~~~  151 (206)
T 4dzz_A           79 AIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-MLNVLK  151 (206)
T ss_dssp             EEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EEHHHH
T ss_pred             EEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HHHHHH
Confidence            334488754  334456677799999999876543  55666666665443  24567899999998532  1 224455


Q ss_pred             HHHHHcCCeE
Q 031249           88 QFAKENGLLF   97 (163)
Q Consensus        88 ~~~~~~~~~~   97 (163)
                      ++.+.++.++
T Consensus       152 ~~l~~~~~~v  161 (206)
T 4dzz_A          152 ESIKDTGVKA  161 (206)
T ss_dssp             HHHHHHTCCB
T ss_pred             HHHHHcCCce
Confidence            5566666553

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.21  E-value=0.05  Score=43.32  Aligned_cols=64  Identities=11%  Similarity=-0.062  Sum_probs=41.4

Q ss_pred             cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249           29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  102 (163)
Q Consensus        29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  102 (163)
                      ...|.++||.|+...+.   .......+.+..   .+..+|+||.|....    .-.+..+....+.|+.+++.
T Consensus       211 ~~pd~vlLVvDA~~gq~---a~~~a~~f~~~~---~i~gVIlTKlD~~~~----gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          211 IHPHEVILVIDGTIGQQ---AYNQALAFKEAT---PIGSIIVTKLDGSAK----GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             HCCSEEEEEEEGGGGGG---HHHHHHHHHHSC---TTEEEEEECCSSCSS----HHHHHHHHHTTCCCEEEEEC
T ss_pred             hcCceEEEEEeCCCchh---HHHHHHHHHhhC---CCeEEEEECCCCccc----ccHHHHHHHHHCCCEEEEEc
Confidence            35799999999876532   222334444432   356789999997432    23445566678889877775

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.44  E-value=0.4  Score=34.08  Aligned_cols=84  Identities=10%  Similarity=0.089  Sum_probs=55.4

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG   86 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~   86 (163)
                      +.|+|  ||+..  .......+..+|.+|++...+ ..+...+..+++.+.+...+...+.+|.|+.+...  ....+  
T Consensus       121 ~viiD--~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~--  191 (245)
T 3ea0_A          121 YIIVD--FGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD--  191 (245)
T ss_dssp             EEEEE--EESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH--
T ss_pred             EEEEe--CCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH--
Confidence            44445  77643  334556778899999999865 67778888888888665433456889999998532  23333  


Q ss_pred             HHHHHHcCCeEEEE
Q 031249           87 EQFAKENGLLFLEA  100 (163)
Q Consensus        87 ~~~~~~~~~~~~~~  100 (163)
                       .+.+.++.+++..
T Consensus       192 -~~~~~~~~~v~~~  204 (245)
T 3ea0_A          192 -EIEKVIGRPISKR  204 (245)
T ss_dssp             -HHHHHHTSCEEEE
T ss_pred             -HHHHHhCCCeEEE
Confidence             3445567776654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.27  E-value=0.12  Score=38.85  Aligned_cols=89  Identities=12%  Similarity=0.025  Sum_probs=52.8

Q ss_pred             Eeeecccchhh--hh-hchh-----hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031249            9 FWSLLQAGQES--FR-SITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR   79 (163)
Q Consensus         9 l~d~Dt~G~e~--~~-~~~~-----~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~   79 (163)
                      +..+||||...  .. .+..     ..+..+|.+++|.|+....   +.....+.+..    ..| ..+|.||.|...  
T Consensus       183 ~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~--  253 (297)
T 1j8m_F          183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA--  253 (297)
T ss_dssp             EEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT--
T ss_pred             EEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc--
Confidence            44445999765  22 1221     1345789999999986432   22223333433    245 678899999632  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 031249           80 AVSKEEGEQFAKENGLLFLEASARTAQNVEE  110 (163)
Q Consensus        80 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  110 (163)
                        ....+..+....+.++..++  .|+++++
T Consensus       254 --~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 --KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             --THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             --chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence              23445567778888977776  4555543

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=93.95  E-value=0.3  Score=34.38  Aligned_cols=81  Identities=11%  Similarity=0.049  Sum_probs=51.5

Q ss_pred             eeecccch-hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249           10 WSLLQAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ   88 (163)
Q Consensus        10 ~d~Dt~G~-e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~   88 (163)
                      ..+|||+. ..  ......+..+|.+|++...+ ..+...+...++.+.+..  +.++.+|.|+.+.... . ...+..+
T Consensus        71 viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~-~~~~~~~  143 (209)
T 3cwq_A           71 IVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-K-DGDEARQ  143 (209)
T ss_dssp             EEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-C-HHHHHHH
T ss_pred             EEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-h-HHHHHHH
Confidence            33447765 32  23455677899999999865 566777777777776633  3568899999986320 1 1345555


Q ss_pred             HHHHcCCeE
Q 031249           89 FAKENGLLF   97 (163)
Q Consensus        89 ~~~~~~~~~   97 (163)
                      ..++++.++
T Consensus       144 ~l~~~g~~v  152 (209)
T 3cwq_A          144 LLTTAGLPL  152 (209)
T ss_dssp             HHHHTTCCB
T ss_pred             HHHHcCCch
Confidence            555566553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.57  E-value=0.31  Score=38.63  Aligned_cols=67  Identities=10%  Similarity=0.001  Sum_probs=44.1

Q ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249           30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  108 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i  108 (163)
                      ..|.++||.|+...+.   +......+.+..   .+..+|.||.|...    ..-.+..+....+.|+.+++.  |+++
T Consensus       211 ~pd~vlLVlDa~~gq~---a~~~a~~f~~~~---~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          211 KPDDVILVIDASIGQK---AYDLASRFHQAS---PIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             CCSEEEEEEEGGGGGG---GHHHHHHHHHHC---SSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             CCcceEEEEeCccchH---HHHHHHHHhccc---CCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence            4689999999876532   223344554443   45788999999743    234455666778999887776  5444

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=92.11  E-value=0.62  Score=33.64  Aligned_cols=64  Identities=17%  Similarity=0.210  Sum_probs=38.4

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHH---HHHHHHhcCCCCeEE-EEeeCCCC
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIM-LVGNKCDL   75 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~i-lv~nK~D~   75 (163)
                      +..+|||+...  ......+..+|.+|++...+. .++..+..+   ++.+.+...++.+++ +|.|+.+.
T Consensus       114 ~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~  181 (257)
T 1wcv_1          114 LVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG  181 (257)
T ss_dssp             EEEEECCSSCC--HHHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred             EEEEeCCCCCC--HHHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence            34444776432  223445567999999998764 445444444   444433333456764 88999985

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=91.91  E-value=1.6  Score=34.44  Aligned_cols=82  Identities=11%  Similarity=-0.018  Sum_probs=45.8

Q ss_pred             eEeeecccchhhhh-----hchh-hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC-e-EEEEeeCCCCCCCC
Q 031249            8 FFWSLLQAGQESFR-----SITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-S-IMLVGNKCDLAHRR   79 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~-----~~~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ilv~nK~D~~~~~   79 (163)
                      .+..+||||.....     .+.. ..+..+|.++||.|+....   +.......+.    ... | ..+|.||.|.... 
T Consensus       182 D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~~-  253 (432)
T 2v3c_C          182 DVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSAK-  253 (432)
T ss_dssp             SEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCST-
T ss_pred             CEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCccc-
Confidence            34445599964321     1111 1123689999999987653   2222223332    224 5 7899999997431 


Q ss_pred             ccCHHHHHHHHHHcCCeEEEE
Q 031249           80 AVSKEEGEQFAKENGLLFLEA  100 (163)
Q Consensus        80 ~v~~~~~~~~~~~~~~~~~~~  100 (163)
                         ...+..+....+.++..+
T Consensus       254 ---~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 ---GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ---THHHHHHHHHSSCCEEEE
T ss_pred             ---hHHHHHHHHHHCCCEEEe
Confidence               123344666777776555

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=90.48  E-value=1.6  Score=30.78  Aligned_cols=80  Identities=13%  Similarity=-0.030  Sum_probs=48.9

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ   88 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~   88 (163)
                      +..+|+|+...  ......+..+|.+|++...+ ..+...+...++.+.+..  ..++.+|.|+.+..... ...+   .
T Consensus       114 ~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~~~~---~  184 (237)
T 1g3q_A          114 FILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRSDRD-IPPE---A  184 (237)
T ss_dssp             EEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSCTTC-CCHH---H
T ss_pred             EEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcccch-hHHH---H
Confidence            33444776432  33455678899999999765 566777777777776542  24567889999853322 2223   3


Q ss_pred             HHHHcCCeE
Q 031249           89 FAKENGLLF   97 (163)
Q Consensus        89 ~~~~~~~~~   97 (163)
                      +.+.++.++
T Consensus       185 ~~~~~~~~~  193 (237)
T 1g3q_A          185 AEDVMEVPL  193 (237)
T ss_dssp             HHHHHCSCE
T ss_pred             HHHHhCccc
Confidence            344456654

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=90.19  E-value=1.6  Score=31.38  Aligned_cols=80  Identities=9%  Similarity=-0.092  Sum_probs=49.9

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG   86 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~   86 (163)
                      +.|.|  +++...  ......+..+|.+|+|...+ ..+...+...++.+.+..  ..++-+|.|+.+....    ....
T Consensus       113 ~viiD--~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~----~~~~  181 (263)
T 1hyq_A          113 ILLLD--APAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGI----EMAK  181 (263)
T ss_dssp             EEEEE--CCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTH----HHHH
T ss_pred             EEEEe--CCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCcccc----cchH
Confidence            44445  776432  33445667899999998754 556777777777776652  2456688999985321    1344


Q ss_pred             HHHHHHcCCeE
Q 031249           87 EQFAKENGLLF   97 (163)
Q Consensus        87 ~~~~~~~~~~~   97 (163)
                      ..+.+.++.++
T Consensus       182 ~~~~~~~~~~~  192 (263)
T 1hyq_A          182 NEIEAILEAKV  192 (263)
T ss_dssp             HHHHHHTTSCE
T ss_pred             HHHHHHhCCCe
Confidence            55566667663

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=88.76  E-value=2  Score=32.79  Aligned_cols=40  Identities=15%  Similarity=0.148  Sum_probs=19.3

Q ss_pred             cCCeEEEEcCCC---------CCCHHHHHHHHHHHHHHHHhhccccccc
Q 031249           93 NGLLFLEASART---------AQNVEEAFIKTAAKILQNIQEGALDAVN  132 (163)
Q Consensus        93 ~~~~~~~~Sa~~---------~~~i~~lf~~l~~~~~~~~~~~~~~~~~  132 (163)
                      .+.|+|.++..+         ..+..+.|..|...+.++....+.++.+
T Consensus       310 ~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~~~~  358 (361)
T 3pg5_A          310 VHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELEHHH  358 (361)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHCCCC-----
T ss_pred             HCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhcc
Confidence            345677777644         5578899999999999999888877654

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=88.04  E-value=1.4  Score=31.86  Aligned_cols=62  Identities=6%  Similarity=-0.027  Sum_probs=41.8

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +.|+|  +|+..  .......+..+|.+|++...+ ..+...+..+++.+.... .+.++.+|.|+.+
T Consensus       147 ~viiD--~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~  208 (267)
T 3k9g_A          147 YIVID--TNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN-LFLPIFLIITRFK  208 (267)
T ss_dssp             EEEEE--ECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred             EEEEE--CcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence            44555  66533  233455666799999999875 456666767777666543 4567889999994

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=87.84  E-value=2.5  Score=31.01  Aligned_cols=82  Identities=16%  Similarity=0.167  Sum_probs=43.1

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCCccCHHH
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~-ilv~nK~D~~~~~~v~~~~   85 (163)
                      +..+|||+....  .....+..+|.+|++...+.  ......+..++..+.+...++.++ -+|.|+.|...  ......
T Consensus       157 ~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~--~~~~~~  232 (298)
T 2oze_A          157 LIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS--ATIKSN  232 (298)
T ss_dssp             EEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC--HHHHHH
T ss_pred             EEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc--HHHHHH
Confidence            334447764322  12334446999999997642  233333334444443333355674 48899998632  122234


Q ss_pred             HHHHHHHcC
Q 031249           86 GEQFAKENG   94 (163)
Q Consensus        86 ~~~~~~~~~   94 (163)
                      ...+.+.++
T Consensus       233 ~~~~~~~~~  241 (298)
T 2oze_A          233 LEELYKQHK  241 (298)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            445555554

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=86.51  E-value=1.1  Score=32.52  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCC-----CCcc-
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAH-----RRAV-   81 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~-----~~~v-   81 (163)
                      +..+|||+......+....+..+|.+|+|..... .+...+...++.+.+.   +.+++ +|.|+.|...     ...+ 
T Consensus       131 ~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~~~  206 (262)
T 2ph1_A          131 HLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHKSYIF  206 (262)
T ss_dssp             EEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCEECTT
T ss_pred             EEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccccccc
Confidence            4445588743211111122236899999987663 3455566666666543   36666 8899987411     1111 


Q ss_pred             CHHHHHHHHHHcCCeEEE
Q 031249           82 SKEEGEQFAKENGLLFLE   99 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~   99 (163)
                      .......+.+.++.+++.
T Consensus       207 ~~~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          207 GEGKGESLAKKYNIGFFT  224 (262)
T ss_dssp             CCCCHHHHHHHTTCSEEE
T ss_pred             cccHHHHHHHHcCCCeEE
Confidence            112244566677877554

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=86.45  E-value=1.2  Score=31.88  Aligned_cols=64  Identities=8%  Similarity=-0.070  Sum_probs=41.8

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC------CCCeEEEEeeCCCC
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------PNMSIMLVGNKCDL   75 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------~~~p~ilv~nK~D~   75 (163)
                      +..+|||+..  .......+..+|.+|++...+ ..+...+..+++.+.....      +...+.+|.|+.+.
T Consensus       116 ~viiD~p~~~--~~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          116 FIVCDSPAGI--ETGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             EEEEECCSSS--SHHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             EEEEcCCCCC--CHHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            3344477632  234566777899999999864 5667777776666643221      22577899999884

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=86.19  E-value=2.3  Score=29.98  Aligned_cols=61  Identities=11%  Similarity=-0.042  Sum_probs=40.9

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +..+|||+..  .......+..+|.+|++...+ ..++..+..+.+.+.+..  -..+.+|.|+.+
T Consensus       134 ~viiD~pp~~--~~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~  194 (254)
T 3kjh_A          134 AVVMDMGAGI--EHLTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR  194 (254)
T ss_dssp             EEEEEECTTC--TTCCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred             EEEEeCCCcc--cHHHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence            3344477643  224566778999999999864 566777766666554443  145788899998

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=80.75  E-value=0.068  Score=41.37  Aligned_cols=72  Identities=17%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCC
Q 031249           29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  105 (163)
Q Consensus        29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  105 (163)
                      +..|.++|+++.....-+..+..    +......+.|+++++||.|.....+. ......+.++.+..+.+.++.+.
T Consensus       244 ~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~~~  315 (369)
T 3ec1_A          244 REIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKRYA  315 (369)
T ss_dssp             SCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGGGT
T ss_pred             cccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCchhh
Confidence            67899999998743211111100    11112245899999999998653332 23334455666765555555443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=80.51  E-value=0.57  Score=37.03  Aligned_cols=65  Identities=11%  Similarity=0.082  Sum_probs=32.4

Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--HHHHHHHHHcCCeEEEEcC
Q 031249           33 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQFAKENGLLFLEASA  102 (163)
Q Consensus        33 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa  102 (163)
                      +++|+.|.....+-.++ .+++.+    ..++|+|+|.||+|.....++..  ..+..-+...|++++.+|.
T Consensus       151 ~v~fI~d~~~~l~~~Di-eilk~L----~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDL-VTMKKL----DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             EEEEECCCC---CHHHH-HHHHHT----CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             EEEEEeCCCCCCCHHHH-HHHHHH----hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence            46666676544333331 233333    24689999999999754332211  1112222345667666664

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=80.46  E-value=14  Score=26.76  Aligned_cols=85  Identities=13%  Similarity=-0.019  Sum_probs=48.0

Q ss_pred             Eeeecccchhhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCe-EEEEeeCCCCCCCCccCHHH
Q 031249            9 FWSLLQAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMS-IMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p-~ilv~nK~D~~~~~~v~~~~   85 (163)
                      +..+||+|......+. ......+|.+|++...+ ..++..+..+++.+.+... .+.+ .-+|.|+.+..    ...+.
T Consensus       121 ~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~  195 (289)
T 2afh_E          121 FVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----REDEL  195 (289)
T ss_dssp             EEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THHHH
T ss_pred             EEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHHHH
Confidence            4444588743222221 22235799999998754 5667766666666654321 2455 45788998631    12344


Q ss_pred             HHHHHHHcCCeEE
Q 031249           86 GEQFAKENGLLFL   98 (163)
Q Consensus        86 ~~~~~~~~~~~~~   98 (163)
                      ...+.+.++.+++
T Consensus       196 ~~~l~~~~g~~~l  208 (289)
T 2afh_E          196 IIALANKLGTQMI  208 (289)
T ss_dssp             HHHHHHHHTSCEE
T ss_pred             HHHHHHHcCcccc
Confidence            4556666776644

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=80.17  E-value=2.1  Score=31.39  Aligned_cols=63  Identities=16%  Similarity=0.147  Sum_probs=37.5

Q ss_pred             eeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH---H-------------H---HHHHHhc-CCC-CeEEE
Q 031249           10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS---W-------------L---EDARQHA-NPN-MSIML   68 (163)
Q Consensus        10 ~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~---~-------------~---~~l~~~~-~~~-~p~il   68 (163)
                      ..+|||+..  .......+..+|.+|++...+. .+...+..   +             +   +.+.... .+. .++.+
T Consensus       107 viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v  183 (286)
T 2xj4_A          107 ILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVV  183 (286)
T ss_dssp             EEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEE
T ss_pred             EEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEE
Confidence            344477753  4445667889999999998753 23322211   1             2   3332220 245 67889


Q ss_pred             EeeCCCC
Q 031249           69 VGNKCDL   75 (163)
Q Consensus        69 v~nK~D~   75 (163)
                      |.|+.+.
T Consensus       184 V~N~~~~  190 (286)
T 2xj4_A          184 LRNRLAT  190 (286)
T ss_dssp             EEECCTT
T ss_pred             EEeeecC
Confidence            9999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-31
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	5e-30
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-29
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-29
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-29
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-28
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-27
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-27
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	7e-27
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-26
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-25
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-25
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-24
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-23
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-22
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	7e-22
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-21
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-21
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	6e-21
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-20
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-20
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-19
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	4e-19
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	4e-19
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-18
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-18
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-17
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-17
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	6e-17
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	7e-17
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-17
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-16
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-16
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-15
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-15
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-14
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	5e-14
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-13
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-13
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-13
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-13
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	8e-13
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	6e-12
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-11
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-11
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	7e-11
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-10
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-10
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-09
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-08
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-07
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-06
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	0.004

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 4e-31
 Identities = 85/112 (75%), Positives = 98/112 (87%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK D
Sbjct: 60  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 119

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126
           L  RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 171

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (262), Expect = 5e-30
 Identities = 50/111 (45%), Positives = 76/111 (68%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           +  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I   + +
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 1e-29
 Identities = 49/107 (45%), Positives = 76/107 (71%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK D
Sbjct: 64  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 123

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
            AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++ +
Sbjct: 124 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-29
 Identities = 73/105 (69%), Positives = 88/105 (83%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 6e-29
 Identities = 56/120 (46%), Positives = 76/120 (63%)

Query: 9   FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIML 68
                 AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IML
Sbjct: 55  AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 114

Query: 69  VGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128
           VGNK DL H RAV  +E   FA++N L F+E SA  + NVEEAF     +I + + +  +
Sbjct: 115 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 2e-28
 Identities = 51/109 (46%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D
Sbjct: 59  AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 118

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
           +   R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I
Sbjct: 119 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 3e-27
 Identities = 70/112 (62%), Positives = 85/112 (75%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK D
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 121

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126
           L   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (242), Expect = 4e-27
 Identities = 50/105 (47%), Positives = 70/105 (66%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK D
Sbjct: 57  AGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 116

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           LA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 117 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 7e-27
 Identities = 46/108 (42%), Positives = 68/108 (62%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N  + ++     
Sbjct: 64  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
               R V + EG +FA+++ +LF+EASA+T   V+ AF +   KI+Q 
Sbjct: 124 DKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.5 bits (239), Expect = 2e-26
 Identities = 39/112 (34%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKC 73
           AGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A      I+L+GNK 
Sbjct: 72  AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 131

Query: 74  DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++ +++
Sbjct: 132 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 183

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.0 bits (230), Expect = 3e-25
 Identities = 47/107 (43%), Positives = 65/107 (60%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           +   R VS E G Q A   G  F EASA+   NV++ F +    I +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (229), Expect = 8e-25
 Identities = 50/121 (41%), Positives = 79/121 (65%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    +
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 182

Query: 135 S 135
            
Sbjct: 183 K 183

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 5e-24
 Identities = 50/108 (46%), Positives = 75/108 (69%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK D
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 3e-23
 Identities = 49/108 (45%), Positives = 71/108 (65%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK D
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
           LA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++  
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 2e-22
 Identities = 36/106 (33%), Positives = 62/106 (58%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75
           GQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL
Sbjct: 61  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 120

Query: 76  AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
              R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 121 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 7e-22
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCD 74
           G E F S+   Y +   G +LVY +  +++F +      +  R      + ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
           L   R VS  EG   A+E G  F+E SA++   V+E F +   ++  
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 83.1 bits (204), Expect = 2e-21
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCD 74
           GQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK D
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
           L  +R VS EE +  A +  + ++E SA+T  NV++ F     +I 
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 5e-21
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 13/138 (9%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
           M   +         AGQE +  +    Y      L+ + +    +F ++         H 
Sbjct: 45  MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH 104

Query: 61  NPNMSIMLVGNKCDLAHRRAV------------SKEEGEQFAKE-NGLLFLEASARTAQN 107
            P    +LVG + DL    +             + E  E+ A++   + ++E SA T + 
Sbjct: 105 CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKG 164

Query: 108 VEEAFIKTAAKILQNIQE 125
           ++  F +     L+  + 
Sbjct: 165 LKNVFDEAILAALEPPEP 182

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.0 bits (201), Expect = 6e-21
 Identities = 44/105 (41%), Positives = 69/105 (65%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AG E FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCD
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           L   R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 121 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 1e-20
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
           +   +      L  AGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  
Sbjct: 45  VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK 104

Query: 61  N-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           +  ++ ++LVGNKCD    R V   + +  A+  G+ ++E SA+T Q VE+AF     +I
Sbjct: 105 DSDDVPMVLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

Query: 120 LQN 122
            Q+
Sbjct: 164 RQH 166

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 1e-20
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 17  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76
           QE +  +    Y     +L+ + +    +F ++ +      +H  PN  I+LVG K DL 
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122

Query: 77  HRRAVSKE------------EGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 121
             +   ++            +G   AKE G + +LE SA T + ++  F +    +L 
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.6 bits (192), Expect = 1e-19
 Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
                   F     AGQE F S+   YYR A  AL+VYD+T+ ++F     W+++  + A
Sbjct: 46  TINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA 105

Query: 61  NPNMSIMLVGNKCDLAH---RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 117
           + ++ I LVGNK D+      R V++EEGE+ A+E GLLF E SA+T +NV + F+    
Sbjct: 106 SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165

Query: 118 KI 119
           KI
Sbjct: 166 KI 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQH 59
           +   + +    L  AGQE F ++   Y R   G LLV+ +T R +F  +  +  +  R  
Sbjct: 47  VIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK 106

Query: 60  ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
                 ++L+GNK DL H+R V++EEG+Q A++  + ++EASA+   NV++AF     ++
Sbjct: 107 DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF-HELVRV 165

Query: 120 LQNIQE 125
           ++  QE
Sbjct: 166 IRKFQE 171

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 4e-19
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
           AGQE +  +    Y      L+ + +    +F ++        +   PN+  +L+G + D
Sbjct: 65  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 124

Query: 75  L------------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
           L               + +  E+G++ AKE G   ++E SA T + ++  F +    IL
Sbjct: 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 2e-18
 Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 6/112 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
           AGQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++G
Sbjct: 63  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122

Query: 71  NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 121
           NK D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L 
Sbjct: 123 NKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.7 bits (182), Expect = 4e-18
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 1   MFFSQESFFWSLLQAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH 59
               +         AGQE F +S+ + YYR     + VYD+T   +F+ L +W+E+ +QH
Sbjct: 45  DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH 104

Query: 60  AN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ---NVEEAFIKT 115
               ++  +LVGNKCDL     V  +  ++FA  + +   E SA+      +VE  F+  
Sbjct: 105 LLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

Query: 116 A 116
           A
Sbjct: 165 A 165

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 2e-17
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKC 73
            GQ+  R + R YY G  G + V D   R+  +     L          +  I++  NK 
Sbjct: 64  GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 123

Query: 74  DLAHRR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           DL        + ++ G    ++       + A +   + E      +  
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 5e-17
 Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
               ++        AGQE F +IT++YYRGA   +LV+  T RE+F  +SSW E      
Sbjct: 45  QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE- 103

Query: 61  NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
             ++   LV NK DL     +  EE E  AK   L F   S +   NV E F   A K L
Sbjct: 104 VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

Query: 121 Q 121
           Q
Sbjct: 164 Q 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 6e-17
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 16  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCD 74
           GQE F ++   Y R   G LLV+ I  R++FN +     +  R     +  ++LVGNK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 75  LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           L  +R V + E   F   + + + EASA+   NV+EAF +    + +  ++
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.2 bits (173), Expect = 7e-17
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQH 59
              +Q +    L  AGQE F ++   Y R   G L+VY +T + +F H+  + +   R  
Sbjct: 46  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 105

Query: 60  ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAK 118
              +  ++LV NK DL H R V++++G++ A +  + ++E SA+    NV++ F      
Sbjct: 106 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 165

Query: 119 ILQ 121
           I Q
Sbjct: 166 IRQ 168

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 7e-17
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQH 59
               Q+     L  AG E F ++   Y +   G  LVY IT + TFN L    E   R  
Sbjct: 45  EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104

Query: 60  ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAK 118
              ++ ++LVGNKCDL   R V KE+G+  A++     FLE+SA++  NV E F     +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164

Query: 119 I 119
           I
Sbjct: 165 I 165

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 2e-16
 Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 9   FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIML 68
                 AG E +  +    Y      L+ + I   ++  ++        +H  PN+ I+L
Sbjct: 52  LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 111

Query: 69  VGNKCDLAHRRAVSK------------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKT 115
           VGNK DL +     +            EEG   A   G   ++E SA+T   V E F   
Sbjct: 112 VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

Query: 116 AAKILQ 121
               LQ
Sbjct: 172 TRAALQ 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 2e-16
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 13/135 (9%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
              +Q         +G   + ++    Y  +   L+ +DI+R ET + +    +   Q  
Sbjct: 44  EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF 103

Query: 61  NPNMSIMLVGNKCDL------------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQN 107
            PN  ++LVG K DL              +  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 104 CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 163

Query: 108 VEEAFIKTAAKILQN 122
                   A     N
Sbjct: 164 SVRDIFHVATLACVN 178

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 2e-15
 Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
                          G   F ++ R         +LVY IT R++   L    E   +  
Sbjct: 44  SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK 103

Query: 61  N--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118
               ++ IMLVGNKCD +  R V   E E  A+     F+E SA+   NV+E F +    
Sbjct: 104 GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL 163

Query: 119 ILQN 122
             + 
Sbjct: 164 EKRR 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 2e-15
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 25  RSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83
             + R   G +LVYDIT R +F   L             N++++LVGNK DL H R VS 
Sbjct: 67  EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST 126

Query: 84  EEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 121
           EEGE+ A E    F E SA T + N+ E F +   ++ +
Sbjct: 127 EEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 9   FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIM 67
           F      GQ+  R + R Y++   G + V D   RE  N      +    +    +  ++
Sbjct: 46  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105

Query: 68  LVGNKC---DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
           +  NK    +  +   ++ + G    +          A +   + E     + ++
Sbjct: 106 VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.9 bits (154), Expect = 5e-14
 Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
           AGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++G
Sbjct: 59  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 118

Query: 71  NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
           NK DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+   E
Sbjct: 119 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 173

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.2 bits (152), Expect = 1e-13
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 6/116 (5%)

Query: 15  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN----MSIMLVG 70
           AGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN N       +++G
Sbjct: 60  AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 119

Query: 71  NKCDLAHRRAVSKEEGEQF-AKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
           NK D    + +  E+  Q  AK  G +     SA+ A NV+ AF + A   LQ  Q
Sbjct: 120 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 2e-13
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
              SQ          GQ   R   RSY+      + V D   R+ F      L +  +  
Sbjct: 54  SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE 113

Query: 61  NP-NMSIMLVGNKCDLAHRR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 116
               + +++  NK DL        +++       ++        SA T + V++      
Sbjct: 114 KLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173

Query: 117 AKI 119
             +
Sbjct: 174 KNV 176

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 62.7 bits (151), Expect = 2e-13
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 20  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHR 78
            R   R YY   A  + V D T ++  +  S  L    Q     + ++++  NK D    
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133

Query: 79  ---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
                VSKE      K+     + +SA   + + E        I +
Sbjct: 134 LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 5e-13
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 17  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDL 75
           QES RS   +YY      ++V D T RE  +     L     H +     +++  NK D+
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 128

Query: 76  AHR---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
                   +S+       K++        A T + + +      +++
Sbjct: 129 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 8e-13
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
                   F     AGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +  
Sbjct: 46  HTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV- 104

Query: 61  NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
             N+ I+L GNK D+  R+   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 105 CENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162

Query: 121 QN 122
            +
Sbjct: 163 GD 164

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 6e-12
 Identities = 23/76 (30%), Positives = 32/76 (42%)

Query: 46  FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 105
                  ++  R     ++ I+LVGNK DL   R VS  EG   A      F+E SA   
Sbjct: 94  EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 153

Query: 106 QNVEEAFIKTAAKILQ 121
            NV+E F     ++  
Sbjct: 154 HNVKELFEGIVRQVRL 169

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-11
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 60
               QE     +  AGQ+ +    ++Y     G +LVY +T  ++F  +           
Sbjct: 46  TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV 105

Query: 61  NP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
               + IMLVGNK DL   R +S EEG+  A+     FLE+SA+  Q   + F +   + 
Sbjct: 106 GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 3e-11
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 38  YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD--LAHRRAVSKEEGEQFAKE-NG 94
            D    +  + L   L   R      +++ LVG +     +  R V          +   
Sbjct: 81  EDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKR 140

Query: 95  LLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
             + E  A    NV+  F + A K++   ++
Sbjct: 141 CSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 7e-11
 Identities = 23/79 (29%), Positives = 32/79 (40%)

Query: 46  FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 105
                  ++  R     ++ I+LVGNK DL   R VS +EG   A      F+E SA   
Sbjct: 88  EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALH 147

Query: 106 QNVEEAFIKTAAKILQNIQ 124
            NV+  F     +I     
Sbjct: 148 HNVQALFEGVVRQIRLRRD 166

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 1e-10
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 14  QAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNK 72
             GQ+S RS  R+Y+    G + V D   R+              +      ++++  NK
Sbjct: 53  VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK 112

Query: 73  CDLAHRRAVSK---EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
            DL    + +           + +       SA T +++          I
Sbjct: 113 QDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-10
 Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 38  YDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLA---HRRAVSKEEGEQFAKEN 93
            D   +E      + L +         + ++++GNK DL      + + ++      ++ 
Sbjct: 78  VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR 137

Query: 94  GLLFLEASARTAQNVEEAFIKTAAKILQNI 123
            +     S +   N++         ++Q+ 
Sbjct: 138 EICCYSISCKEKDNIDITL----QWLIQHS 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 4/123 (3%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT-RRETFNHLSSWLEDARQH 59
               +   F      G  S R   R YY      + V D   R       S  +    + 
Sbjct: 43  TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE 102

Query: 60  ANPNMSIMLVGNKCDLAHRRAVSK---EEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 116
                 +++  NK D+      S+     G    K+      + SA     ++EA     
Sbjct: 103 ELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162

Query: 117 AKI 119
             +
Sbjct: 163 ETL 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 8   FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSI 66
            F +    G    R + + Y+    G + + D    E F+     L+     A   ++  
Sbjct: 45  KFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 104

Query: 67  MLVGNKCDLAHRRAVSK----------EEGEQFAKENGLLFLEASARTAQNVEEAF 112
           +++GNK D  +  + ++             ++   +  +     S        EAF
Sbjct: 105 VILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 46.6 bits (109), Expect = 1e-07
 Identities = 21/128 (16%), Positives = 34/128 (26%), Gaps = 16/128 (12%)

Query: 8   FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSI 66
            F +    G    R + ++Y     G + + D    E        L          N+ I
Sbjct: 58  TFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI 117

Query: 67  MLVGNKCDLAHRRAVSK---------------EEGEQFAKENGLLFLEASARTAQNVEEA 111
           +++GNK D     +  +                   +      L     S    Q   E 
Sbjct: 118 LILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 177

Query: 112 FIKTAAKI 119
           F   A  I
Sbjct: 178 FRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 21/158 (13%), Positives = 39/158 (24%), Gaps = 37/158 (23%)

Query: 2   FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS---------- 51
           F  ++  F      GQ S R      + G    +    ++  +                 
Sbjct: 37  FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK 96

Query: 52  -WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------------- 94
            +          + SI+L  NK DL   +         + +  G                
Sbjct: 97  LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE 156

Query: 95  ----------LLFLEASARTAQNVEEAFIKTAAKILQN 122
                     +      A   +NV+  F      I++N
Sbjct: 157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 22/159 (13%), Positives = 40/159 (25%), Gaps = 37/159 (23%)

Query: 1   MFFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT-----------RRETFNHL 49
            F  Q   F  +   GQ S R      +      + +  ++                   
Sbjct: 39  PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK 98

Query: 50  SSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--------------- 94
           + +          N S++L  NK DL   + +     + F + +G               
Sbjct: 99  ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKM 158

Query: 95  -----------LLFLEASARTAQNVEEAFIKTAAKILQN 122
                      +      A   +N+   F      ILQ 
Sbjct: 159 FVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 16/133 (12%)

Query: 24  TRSYYRGAAGALLVYDITRRETF-----NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 78
              +   A   + V D    +         L   L D+    N + S+++  NK D+A  
Sbjct: 65  LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN-SPSLLIACNKQDIAMA 123

Query: 79  RAVSKEEGEQFAKE---------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129
           ++  K   +Q  KE              L++S+     + +   +     L    E    
Sbjct: 124 KSA-KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC 182

Query: 130 AVNDQSGIKVGYG 142
           +     G      
Sbjct: 183 SAKGGRGDTGSAD 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.93
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.93
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.93
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.92
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.92
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.9
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.9
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.89
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.88
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.87
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.87
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.84
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.83
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.83
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.73
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.64
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.64
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.57
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.56
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.55
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.55
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.46
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.44
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.42
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.42
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.42
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.39
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.36
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.32
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.31
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.29
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.27
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.21
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.21
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.19
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.15
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.05
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.03
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.9
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.8
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.77
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.69
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.68
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.65
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.64
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.61
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.38
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.23
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.18
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.13
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.92
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.56
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.56
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.29
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.83
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.72
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.01
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.63
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	89.04
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.57
d2qy9a2	211	GTPase domain of the signal recognition particle r	86.13
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	81.44
d1j8yf2	211	GTPase domain of the signal sequence recognition p	80.31

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=166.77  Aligned_cols=122  Identities=25%  Similarity=0.296  Sum_probs=101.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.|..|||+|+++|..++..+++++|++|+|||++++.||+.+..|+.++..... ..+|++|||||+|+.+.++++
T Consensus        45 ~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~  124 (168)
T d2gjsa1          45 GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS  124 (168)
T ss_dssp             TEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSC
T ss_pred             ccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchh
Confidence            4444444445999999999999999999999999999999999999999999977654 568999999999998888899


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      ..++..+++.++++|+++||++|.||+++|.+|++.+..+.++
T Consensus       125 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~~~  167 (168)
T d2gjsa1         125 VDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS  167 (168)
T ss_dssp             HHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999988777654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-26  Score=159.72  Aligned_cols=122  Identities=30%  Similarity=0.462  Sum_probs=109.3

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+.+..|||+|+++|..++..+++++|++|+|||+++..||..+..|+..+.+.. ..+.|++|||||+|+.+.+.+
T Consensus        50 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~  129 (173)
T d2fn4a1          50 DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV  129 (173)
T ss_dssp             TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCS
T ss_pred             CCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhcccc
Confidence            4455666666699999999999999999999999999999999999999999987654 357899999999999887888


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      ..+++..+++.++++|+++||++|.||+++|+.|++.+.+++.
T Consensus       130 ~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         130 PRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             CHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             chhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999877543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.4e-26  Score=158.29  Aligned_cols=118  Identities=31%  Similarity=0.588  Sum_probs=99.4

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.+..|||+|++++..++..+++++|++|+|||+++++||+.+..|+..+........|++|+|||+|+.+++.++.
T Consensus        49 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~  128 (167)
T d1z08a1          49 GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI  128 (167)
T ss_dssp             SCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCH
T ss_pred             CccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccch
Confidence            33444444459999999999999999999999999999999999999999988776666789999999999988888999


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +++..+++.++++++++||++|.||+++|.+|++.+++
T Consensus       129 ~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         129 QEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999998763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=9.7e-26  Score=156.90  Aligned_cols=115  Identities=42%  Similarity=0.734  Sum_probs=106.0

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..++|||  |||+++|..++..+++++|++|+|||+++.+++..+..|+..+........|+++++||.|+.+.+.++.+
T Consensus        54 ~~l~~wD--t~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~  131 (169)
T d3raba_          54 IKLQIWD--TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE  131 (169)
T ss_dssp             EEEEEEE--ECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEEE--CCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchh
Confidence            3566777  99999999999999999999999999999999999999998887777678999999999999887888999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ++..+++..+++++++||++|.||+++|++|++.+.+
T Consensus       132 ~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         132 RGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.93  E-value=4.4e-26  Score=158.67  Aligned_cols=119  Identities=33%  Similarity=0.472  Sum_probs=104.1

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+.+..|||+|++++..++..+++++|++|+|||+++..+|+.+..|++.+.+... ++.|++||+||+|+.+.+.+
T Consensus        48 ~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v  127 (168)
T d1u8za_          48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV  127 (168)
T ss_dssp             TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS
T ss_pred             ccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccc
Confidence            44555555556999999999999999999999999999999999999999999977643 67999999999999887889


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +.+++..+++.++++++++||++|.||+++|.+|++++.+
T Consensus       128 ~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         128 SVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999988754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.5e-26  Score=157.02  Aligned_cols=113  Identities=40%  Similarity=0.624  Sum_probs=104.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.+||  |+|++++..++..+++++|++++|||+++..||+.+..|++++.+.. ++.|++|||||+|+.+++.++.++
T Consensus        52 ~~~i~d--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~  128 (164)
T d1z2aa1          52 RLMLWD--TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEE  128 (164)
T ss_dssp             EEEEEC--CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHH
T ss_pred             eeeeec--cCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehh
Confidence            445555  99999999999999999999999999999999999999999998766 568999999999998888899999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +..+++.++++|+++||++|.||+++|++|++.+++
T Consensus       129 ~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         129 AEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             hHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999998763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.5e-25  Score=156.08  Aligned_cols=115  Identities=29%  Similarity=0.512  Sum_probs=104.9

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..+++||  ++|++++..++..+++++|++++|||++++.||..+..|+..+.+... .+.|++|++||+|+.+.+.++.
T Consensus        52 ~~~~i~d--~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~  129 (169)
T d1x1ra1          52 AILDVLD--TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTR  129 (169)
T ss_dssp             EEEEEEE--CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCH
T ss_pred             ccccccc--cccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeeh
Confidence            3456666  999999999999999999999999999999999999999999876643 5799999999999988888999


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCC-CHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ  121 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~-~i~~lf~~l~~~~~~  121 (163)
                      +++..+++.++++|+++||+++. ||+++|..|++.+.+
T Consensus       130 e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         130 DQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999875 999999999998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=155.95  Aligned_cols=115  Identities=43%  Similarity=0.759  Sum_probs=105.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.+||  |||+++|..+++.+++++|++++|||+++..++..+..|+..+.+......|++||+||+|+.+...+..++
T Consensus        55 ~l~i~D--t~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~  132 (171)
T d2ew1a1          55 KLQIWD--TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQR  132 (171)
T ss_dssp             EEEEEE--ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHH
T ss_pred             EEEEEE--CCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhH
Confidence            355666  999999999999999999999999999999999999999999987776779999999999998878889999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +..+++..++++++|||++|.||+++|.+|++.++..
T Consensus       133 ~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         133 AEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999888764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-25  Score=154.69  Aligned_cols=122  Identities=70%  Similarity=1.033  Sum_probs=110.6

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      ..+.+..||++|++.+..+++.+++++|++|+|||++++.+|..+..|+..+.+....+.|++||+||+|+...+.+..+
T Consensus        50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~  129 (173)
T d2a5ja1          50 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKRE  129 (173)
T ss_dssp             EEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred             eEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHH
Confidence            34455555599999999999999999999999999999999999999999998877778999999999999877788899


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      ++..+++..+++|+++||++|.||+++|.++++.+.++..+.
T Consensus       130 ~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~~  171 (173)
T d2a5ja1         130 EGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG  171 (173)
T ss_dssp             HHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999998776653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.1e-26  Score=156.62  Aligned_cols=119  Identities=29%  Similarity=0.390  Sum_probs=106.7

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+.+..|||+|.++|..++..+++++|++|+|||+++++||..+..|+..+.+... .+.|++||+||+|+..++.+
T Consensus        48 ~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v  127 (167)
T d1xtqa1          48 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI  127 (167)
T ss_dssp             TTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCS
T ss_pred             CcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccch
Confidence            44555555555999999999999999999999999999999999999999999876553 57899999999999887889


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +.+++..+++.++++|+++||++|.||+++|+.|++++.+
T Consensus       128 ~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~K  167 (167)
T d1xtqa1         128 SYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK  167 (167)
T ss_dssp             CHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=158.24  Aligned_cols=118  Identities=35%  Similarity=0.662  Sum_probs=107.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+++||  |+|+++|..++..+++++|++|+|||+++..+|+.+..|+..+..... ...|++||+||.|+.+.++++.+
T Consensus        65 ~~~i~d--t~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~  142 (186)
T d2f7sa1          65 HLQLWD--TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER  142 (186)
T ss_dssp             EEEEEE--EESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred             Eecccc--CCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHH
Confidence            456666  999999999999999999999999999999999999999988765443 56899999999999888889999


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      ++..+++.++++++++||++|.||+++|++|++.+.+++++
T Consensus       143 e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         143 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999877654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=154.87  Aligned_cols=117  Identities=43%  Similarity=0.713  Sum_probs=107.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.+++|||+|+++|..++..+++++|++++|||+++..+|..+..|+..+.+...++.|++||+||+|+.+.+.++.
T Consensus        52 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~  131 (170)
T d1r2qa_          52 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF  131 (170)
T ss_dssp             TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH
T ss_pred             ceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccH
Confidence            34566666779999999999999999999999999999999999999999999887778899999999999988888999


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +++..+++.++++|+++||++|.||+++|.+|++.+.
T Consensus       132 e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             HHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999987654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-25  Score=152.47  Aligned_cols=116  Identities=43%  Similarity=0.661  Sum_probs=104.9

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.+..|||+|++++..++..+++++|++++|||+++..+|..+..|+..+.....++.|++||+||.|+.+.+.+..
T Consensus        46 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~  125 (164)
T d1yzqa1          46 DRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSI  125 (164)
T ss_dssp             SCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCH
T ss_pred             CCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhH
Confidence            33444444449999999999999999999999999999999999999999999887777899999999999988788889


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +++..++++++++|++|||++|.||+++|++|++.+
T Consensus       126 ~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         126 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            999999999999999999999999999999998865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.2e-25  Score=152.67  Aligned_cols=112  Identities=66%  Similarity=1.056  Sum_probs=104.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|++++..++..+++++|++|+|||+++.+||..+..|+..+.+......|+++++||.|+.....+..++
T Consensus        54 ~l~i~D--~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~  131 (166)
T d1z0fa1          54 KLQIWD--TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEE  131 (166)
T ss_dssp             EEEEEE--CTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEec--cCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHH
Confidence            455555  999999999999999999999999999999999999999999988777789999999999998878888899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +..+++..++++++|||++|.||+++|++|++.+
T Consensus       132 ~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         132 AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.4e-25  Score=154.07  Aligned_cols=119  Identities=60%  Similarity=0.909  Sum_probs=110.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|++++..+++.+++++|++|+|||+++.++|..+..|+..+.....++.|+++++||+|+.....+..+.
T Consensus        55 ~~~i~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~  132 (174)
T d2bmea1          55 KLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLE  132 (174)
T ss_dssp             EEEEEE--ECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             eEEEEE--CCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhH
Confidence            456666  999999999999999999999999999999999999999999988777789999999999998778888899


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  126 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  126 (163)
                      +..+++..+++++++||++|.||+++|.++++.+++++..+
T Consensus       133 ~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~~  173 (174)
T d2bmea1         133 ASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999887654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9.2e-25  Score=155.17  Aligned_cols=122  Identities=42%  Similarity=0.761  Sum_probs=110.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |||+++|..+|..+++++|++|+|||+++..+|..+..|+..+.+......|++||+||.|+.+...+..++
T Consensus        56 ~l~i~D--t~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~  133 (194)
T d2bcgy1          56 KLQIWD--TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDV  133 (194)
T ss_dssp             EEEEEC--CTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred             EEEEEE--CCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHH
Confidence            445555  999999999999999999999999999999999999999999987777789999999999998888899999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  129 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~  129 (163)
                      ...+++..++.++++||++|.||+++|++|++.+.+.......+
T Consensus       134 ~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         134 AKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHhhhcccC
Confidence            99999999999999999999999999999999988766554443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.3e-25  Score=154.07  Aligned_cols=118  Identities=22%  Similarity=0.361  Sum_probs=99.6

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC-----
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-----   77 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~-----   77 (163)
                      ++..+.+..|||+|+++|..++..+++++|++++|||+++++||+.+..|+....+...++.|+++|+||+|+.+     
T Consensus        53 ~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~  132 (185)
T d2atxa1          53 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTL  132 (185)
T ss_dssp             SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHH
T ss_pred             CCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhh
Confidence            344555555559999999999999999999999999999999999877655555444446799999999999864     


Q ss_pred             -------CCccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           78 -------RRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        78 -------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                             .+.++.+++.++++.++ ++|+||||+++.||+++|+.+++.++
T Consensus       133 ~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         133 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             HHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence                   35688999999999887 68999999999999999999998874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.5e-24  Score=151.34  Aligned_cols=117  Identities=44%  Similarity=0.835  Sum_probs=93.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |+|+++|..++..+++++|++|+|||++++.||..+..|+..+......+.|+++|+||.|+...+....++
T Consensus        56 ~l~i~D--~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~  133 (173)
T d2fu5c1          56 KLQIWD--TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKER  133 (173)
T ss_dssp             EEEEEE--C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHH
T ss_pred             EEEEEE--CCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHH
Confidence            455566  999999999999999999999999999999999999999999987777789999999999998877888888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  124 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  124 (163)
                      +..++...++++++|||++|.||+++|.+|++.+.++.+
T Consensus       134 ~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~~  172 (173)
T d2fu5c1         134 GEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999977764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-24  Score=150.90  Aligned_cols=120  Identities=48%  Similarity=0.813  Sum_probs=109.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+.|||  |+|+++|..++..+++++|++|+|||++++.||..+..|+..+.+...++.|++||+||+|+.+.+....+.
T Consensus        54 ~~~i~d--~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~  131 (175)
T d2f9la1          54 KAQIWD--TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDE  131 (175)
T ss_dssp             EEEEEE--CSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEecc--cCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHH
Confidence            556676  999999999999999999999999999999999999999999988887789999999999998777777888


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ...+....+.+++++||++|.||+++|+++++.+.+...+++
T Consensus       132 ~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~~~q  173 (175)
T d2f9la1         132 ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhhhcc
Confidence            888999999999999999999999999999999988776654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1e-24  Score=151.27  Aligned_cols=112  Identities=40%  Similarity=0.811  Sum_probs=104.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|++++..++..+++++|++|+|||++++++|+.+..|+..+.+...+..|++||+||+|+.+.+.+..++
T Consensus        54 ~~~i~d--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~  131 (167)
T d1z0ja1          54 KFLIWD--TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERD  131 (167)
T ss_dssp             EEEEEE--ECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHH
T ss_pred             ceeeee--cCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHH
Confidence            455677  999999999999999999999999999999999999999999988877889999999999998888899999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +..+++.++++|+++||++|.||+++|.+|++++
T Consensus       132 ~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         132 AKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.2e-26  Score=157.61  Aligned_cols=116  Identities=28%  Similarity=0.385  Sum_probs=102.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCCCCcc
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~~~~~~v   81 (163)
                      +..+.+..|||+|+++|..++..+++++|++|+|||++++++|..+..|+..+.+...  .++|++|||||+|+...+++
T Consensus        47 ~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v  126 (171)
T d2erxa1          47 KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV  126 (171)
T ss_dssp             TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS
T ss_pred             cccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccc
Confidence            4445554455999999999999999999999999999999999999999998876543  56899999999999877889


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +.+++..+++.++++|+++||++|.||+++|..|++.+
T Consensus       127 ~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         127 QSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             CHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=152.04  Aligned_cols=116  Identities=28%  Similarity=0.383  Sum_probs=101.6

Q ss_pred             eeeEeee-cccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            6 ESFFWSL-LQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         6 ~~~l~d~-Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      .+.+||+ ||+|+++|  ++..+++++|++|+|||++++.+|..+..|+..+..... +++|++||+||+|+.+.++++.
T Consensus        54 ~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~  131 (172)
T d2g3ya1          54 TIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV  131 (172)
T ss_dssp             EEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH
T ss_pred             eeeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccH
Confidence            3455552 36788887  677899999999999999999999999999998876533 5799999999999988888999


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +++..+++.++++|+++||++|.||+++|..|++++..++
T Consensus       132 ~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         132 SEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999987664

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=151.31  Aligned_cols=120  Identities=32%  Similarity=0.521  Sum_probs=102.2

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+..|||+|.+++..++..+++++|++++|||++++.||..+..|+..+.+... ...|++||+||+|+...+.++
T Consensus        50 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~  129 (171)
T d2erya1          50 DRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVT  129 (171)
T ss_dssp             TEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSC
T ss_pred             ccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccch
Confidence            3344444444999999999999999999999999999999999999999998866543 568999999999998888899


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      .+++..+++.++++|++|||++|.||+++|.+|++.+.+++
T Consensus       130 ~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~~  170 (171)
T d2erya1         130 QEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999886553

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=152.44  Aligned_cols=113  Identities=29%  Similarity=0.488  Sum_probs=97.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-------   78 (163)
                      .++|||  |+|++.|..++..+++++|++|+|||+++++||+.+..|+..+.....++.|++||+||+|+.+.       
T Consensus        51 ~l~i~D--~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~  128 (177)
T d1kmqa_          51 ELALWD--TAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRREL  128 (177)
T ss_dssp             EEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHH
T ss_pred             eeeccc--cCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHH
Confidence            456666  99999999999999999999999999999999998887555554444467999999999998642       


Q ss_pred             -----CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           79 -----RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        79 -----~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                           +.++.+++..+++.++ .+|+||||++|.||+++|+.+++.++
T Consensus       129 ~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         129 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence                 4578899999999988 57999999999999999999998876

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-24  Score=149.96  Aligned_cols=113  Identities=44%  Similarity=0.799  Sum_probs=97.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .++|||  |||++++..++..+++++|++++|||+++..++..+..|+..+........|+++++||.|+.+...++.++
T Consensus        57 ~l~i~D--t~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~  134 (170)
T d2g6ba1          57 KLQMWD--TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKRED  134 (170)
T ss_dssp             EEEEEE--CCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHH
T ss_pred             EEEEEE--CCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHH
Confidence            445566  999999999999999999999999999999999999999998888777779999999999998888899999


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +..+++.++++++++||++|.||+++|.+|++.+.
T Consensus       135 ~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         135 GEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            99999999999999999999999999999998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=150.99  Aligned_cols=120  Identities=34%  Similarity=0.417  Sum_probs=102.3

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+.+..|||+|++.+. .+..+++++|++++|||++++.+|..+..|+..+..... ++.|+++||||+|+.+.+.+
T Consensus        46 ~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V  124 (168)
T d2atva1          46 DDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV  124 (168)
T ss_dssp             TTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS
T ss_pred             cccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccC
Confidence            3444445455599998875 567799999999999999999999999998776655433 57999999999999877889


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCC-CHHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQNI  123 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~lf~~l~~~~~~~~  123 (163)
                      +.+++..+++.++++|+++||++|. ||+++|.+|++.+.+++
T Consensus       125 ~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         125 STEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             CHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999998 59999999999887764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.2e-25  Score=151.72  Aligned_cols=118  Identities=31%  Similarity=0.479  Sum_probs=105.6

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+.+..||++|++.+..++..+++++|++++|||++++.+|..+..|+..+..... +++|++|||||+|+.+.+.+
T Consensus        47 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~  126 (167)
T d1kaoa_          47 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREV  126 (167)
T ss_dssp             TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCS
T ss_pred             CcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccc
Confidence            34455565556999999999999999999999999999999999999999999876543 57899999999999887888


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      ..+++..+++.++++++++||++|.||+++|.+|++++.
T Consensus       127 ~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         127 SSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999988764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.1e-24  Score=150.89  Aligned_cols=113  Identities=20%  Similarity=0.366  Sum_probs=96.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH--------   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~--------   77 (163)
                      .++|||  |+|+++|..++..+++++|++++|||+++++||+.+..|+........++.|+++|+||+|+.+        
T Consensus        52 ~l~i~D--~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~  129 (191)
T d2ngra_          52 TLGLFD--TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKL  129 (191)
T ss_dssp             EEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHH
T ss_pred             eeeccc--cccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhh
Confidence            456666  9999999999999999999999999999999999998755555444447799999999999853        


Q ss_pred             ----CCccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           78 ----RRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        78 ----~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                          ...+..+++..+++.++ .+|+++||+++.||+++|+.+++.+.
T Consensus       130 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             HTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             hhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHh
Confidence                34588899999998864 78999999999999999999987653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.6e-24  Score=148.55  Aligned_cols=117  Identities=36%  Similarity=0.567  Sum_probs=102.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+..||++|++.+..++..+++++|++|+|||++++.||+.+..|+..+.+... ++.|++|||||+|+.....+.
T Consensus        48 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~  127 (167)
T d1c1ya_          48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG  127 (167)
T ss_dssp             SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC
T ss_pred             eeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccc
Confidence            3344444444999999999999999999999999999999999999999999877543 578999999999998888888


Q ss_pred             HHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        83 ~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .+++..+++++ +++|+++||++|.||+++|.+|++.+.
T Consensus       128 ~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         128 KEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            99999998874 688999999999999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.1e-23  Score=144.52  Aligned_cols=116  Identities=35%  Similarity=0.612  Sum_probs=91.8

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCC-Cc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHR-RA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~-~~   80 (163)
                      .+.+||  |+|++++..++..+++.+|++++|||++++.||..+..|+.++.....    ..+|++|++||+|+.+. +.
T Consensus        53 ~~~~~d--~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~  130 (175)
T d1ky3a_          53 TMQVWD--TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI  130 (175)
T ss_dssp             EEEEEC--CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC
T ss_pred             cceeec--cCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcc
Confidence            345566  999999999999999999999999999999999999999999876432    46899999999999764 34


Q ss_pred             cCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           81 VSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        81 v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      ++.+++..+++.++ ++|+++||++|.||+++|++|++.++++.
T Consensus       131 v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         131 VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             SCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence            77889999998886 78999999999999999999999887653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=145.66  Aligned_cols=117  Identities=32%  Similarity=0.576  Sum_probs=104.0

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+.+||++|++.+..++..+++.++++++|||++++.+|+.+..|+..+.+... +++|+++|+||+|+.. +.+.
T Consensus        48 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~  126 (166)
T d1ctqa_          48 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVE  126 (166)
T ss_dssp             TEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSC
T ss_pred             ceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-cccc
Confidence            3445555555999999999999999999999999999999999999999999977654 5689999999999864 5678


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .+++..+++.++++++++||++|.||+++|.+|++.+.+
T Consensus       127 ~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         127 SRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999988753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-24  Score=148.49  Aligned_cols=111  Identities=31%  Similarity=0.594  Sum_probs=97.9

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE   85 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~   85 (163)
                      .+++||  |+|++++..++..+++++|++++|||+++++||+.+..|+..+.+.. ++.|++|||||+|+...+.  .++
T Consensus        53 ~l~i~D--~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~--~~~  127 (170)
T d1i2ma_          53 KFNVWD--TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAK  127 (170)
T ss_dssp             EEEEEE--CTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCC--TTT
T ss_pred             cccccc--cccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhh--hhH
Confidence            456666  99999999999999999999999999999999999999999988765 5799999999999966443  345


Q ss_pred             HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      +..++...+++|+++||++|.||+++|.+|++.++.
T Consensus       128 ~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         128 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             SHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            567888889999999999999999999999998863

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=8e-23  Score=141.43  Aligned_cols=118  Identities=42%  Similarity=0.722  Sum_probs=104.6

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      +..+.+..|||||+++|..++..+++++|++|+|||.+++.+|+.+..|+..+........|++++++|.|+.+ +....
T Consensus        48 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~  126 (166)
T d1g16a_          48 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTA  126 (166)
T ss_dssp             SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCH
T ss_pred             CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhH
Confidence            44444433449999999999999999999999999999999999999999999888777889999999999855 56778


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      +++..+++.+++++++|||+++.||+++|.+|++.+.++
T Consensus       127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         127 DQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999888654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.2e-23  Score=142.88  Aligned_cols=112  Identities=43%  Similarity=0.780  Sum_probs=101.1

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC---CCccC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH---RRAVS   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~---~~~v~   82 (163)
                      .+++||  |+|++++..++..+++++|++|+|||++++.+|..+..|+..+........|+++++||.|+.+   .+.+.
T Consensus        53 ~l~i~d--~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~  130 (170)
T d1ek0a_          53 KFEIWD--TAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVA  130 (170)
T ss_dssp             EEEEEE--ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSC
T ss_pred             cccccc--cCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhh
Confidence            455665  9999999999999999999999999999999999999999988777767799999999999743   36788


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .+++..+++..+++|+++||++|.||+++|..|++++
T Consensus       131 ~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         131 REEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999997654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-22  Score=140.92  Aligned_cols=114  Identities=46%  Similarity=0.809  Sum_probs=102.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE   84 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~   84 (163)
                      .+.|||  |+|++++..++..+++++|++|+|||+++..+++.+..|+.++.+... ...|+++++||.|... +.+..+
T Consensus        57 ~~~i~D--t~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~  133 (177)
T d1x3sa1          57 KLAIWD--TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRN  133 (177)
T ss_dssp             EEEEEE--ECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHH
T ss_pred             EEEEEE--CCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHH
Confidence            455665  999999999999999999999999999999999999999999876543 4689999999999754 678899


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      ++..+++.++++++++||++|.||+++|+++++.+.+.
T Consensus       134 ~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         134 EGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.5e-23  Score=143.54  Aligned_cols=114  Identities=27%  Similarity=0.468  Sum_probs=98.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH--------   77 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~--------   77 (163)
                      .+++||  |+|++.+..+++.+++++|++|+|||+++++||+.+..|+........++.|++|||||+|+..        
T Consensus        51 ~~~i~D--~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~  128 (179)
T d1m7ba_          51 ELSLWD--TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVEL  128 (179)
T ss_dssp             EEEEEE--ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHH
T ss_pred             eecccc--ccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHH
Confidence            455666  9999999999999999999999999999999999998866665454446899999999999853        


Q ss_pred             ----CCccCHHHHHHHHHHcC-CeEEEEcCCCCCC-HHHHHHHHHHHHHH
Q 031249           78 ----RRAVSKEEGEQFAKENG-LLFLEASARTAQN-VEEAFIKTAAKILQ  121 (163)
Q Consensus        78 ----~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~-i~~lf~~l~~~~~~  121 (163)
                          .+.++.+++..+++..+ ..|+||||+++.+ |+++|+.+.+.++.
T Consensus       129 ~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         129 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence                35688999999999887 4799999999985 99999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.7e-22  Score=142.01  Aligned_cols=113  Identities=27%  Similarity=0.449  Sum_probs=94.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-------
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------   78 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-------   78 (163)
                      .+++||  ++|++.|..++..+++++|++++|||+++.+||+.+..|+....+....+.|++||+||+|+.++       
T Consensus        54 ~~~~~d--~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~  131 (183)
T d1mh1a_          54 NLGLWD--TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKL  131 (183)
T ss_dssp             EEEEEC--CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHH
T ss_pred             EEEeec--ccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhh
Confidence            345555  99999999999999999999999999999999999977444443334467999999999997543       


Q ss_pred             -----CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           79 -----RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        79 -----~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                           +.+...++..+++.++ ++|+||||++|.||+++|.+|++.++
T Consensus       132 ~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         132 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence                 3355678888888877 78999999999999999999998874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4e-22  Score=137.56  Aligned_cols=109  Identities=34%  Similarity=0.689  Sum_probs=95.7

Q ss_pred             ceeeEeeecccchhhhhh-chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            5 QESFFWSLLQAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~-~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      ..+.+||  ++|.+.+.. .++.+++++|++|+|||++++.||+.+..|+..+.+... .+.|++|||||+|+.+.++++
T Consensus        51 ~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~  128 (165)
T d1z06a1          51 IKIQLWD--TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP  128 (165)
T ss_dssp             EEEEEEE--CCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC
T ss_pred             eEEEEEe--ccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchh
Confidence            3456666  788777654 578899999999999999999999999999999977654 578999999999998888899


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCC---CCCHHHHHHHH
Q 031249           83 KEEGEQFAKENGLLFLEASART---AQNVEEAFIKT  115 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~lf~~l  115 (163)
                      .+++..+++.++++|++|||++   ++||+++|.+|
T Consensus       129 ~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         129 TDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             HHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHh
Confidence            9999999999999999999987   56999999987

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-21  Score=136.35  Aligned_cols=113  Identities=33%  Similarity=0.654  Sum_probs=99.6

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+++||  |+|+.++...+..++..+|+++++||.++..||..+..|++++.....    .+.|++||+||.|+.+ +.+
T Consensus        56 ~~~i~d--~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v  132 (174)
T d1wmsa_          56 TMQIWD--TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQV  132 (174)
T ss_dssp             EEEEEE--CCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSS
T ss_pred             eEeeec--ccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccC
Confidence            345555  999999999999999999999999999999999999999998866432    4689999999999865 678


Q ss_pred             CHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..+++..+++.. .++|+++||+++.||+++|++|++.++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         133 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            999999999876 4889999999999999999999998863

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-21  Score=136.09  Aligned_cols=115  Identities=16%  Similarity=0.274  Sum_probs=96.0

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCC--CCc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAH--RRA   80 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~--~~~   80 (163)
                      .++|||  |+|++++     .|++.+|++|+|||++++.||+.+..|+..+.....   ...|+++|+||.|+..  .+.
T Consensus        53 ~l~i~D--t~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~  125 (175)
T d2bmja1          53 LVLIRE--EAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV  125 (175)
T ss_dssp             EEEEEE--CSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCC
T ss_pred             EEEEee--ccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcc
Confidence            455666  9998875     478999999999999999999999999998866542   4679999999888643  456


Q ss_pred             cCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           81 VSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        81 v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ++.+++..++.. .+++|++|||+++.||+++|..+++.+.....+++
T Consensus       126 v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         126 VGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             SCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhhhcc
Confidence            788889888655 56889999999999999999999999988876653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.8e-21  Score=136.66  Aligned_cols=120  Identities=36%  Similarity=0.617  Sum_probs=102.5

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+.+||  |+|.+.+..++..++..+|++++|||+++..+|..+..|++.+.....    ..+|++||+||+|+.+ +++
T Consensus        52 ~~~~~d--~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~  128 (184)
T d1vg8a_          52 TMQIWD--TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV  128 (184)
T ss_dssp             EEEEEE--ECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCS
T ss_pred             EEEeee--cCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cch
Confidence            445555  999999999999999999999999999999999999999998876542    3589999999999866 556


Q ss_pred             CHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249           82 SKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  128 (163)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~  128 (163)
                      ..++...++. ..+++++++||++|.||+++|++|++.+.++..+.+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~~~~~  176 (184)
T d1vg8a_         129 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL  176 (184)
T ss_dssp             CHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhccccccc
Confidence            7777777764 5678999999999999999999999999887765543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.84  E-value=4.6e-21  Score=134.25  Aligned_cols=117  Identities=22%  Similarity=0.257  Sum_probs=90.1

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..+.+||  |+|++++..++..+++++|++++|||+++..++..+..|+..+.+.. ..+.|++|++||+|+..  .+
T Consensus        59 ~~~~~~i~D--~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~  134 (182)
T d1moza_          59 KNLKLNVWD--LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--AL  134 (182)
T ss_dssp             TTEEEEEEE--EC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CC
T ss_pred             CCEEEEEEe--cccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--cc
Confidence            355677777  89999999999999999999999999999999999888887764433 35699999999999854  23


Q ss_pred             CHHHHHHH-----HHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQF-----AKENGLLFLEASARTAQNVEEAFIKTAAKILQNI  123 (163)
Q Consensus        82 ~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  123 (163)
                      +..++...     +...++++++|||++|+||+++|++|++.+.+.+
T Consensus       135 ~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         135 SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            44444332     2233456999999999999999999999987654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.83  E-value=1.8e-20  Score=129.09  Aligned_cols=115  Identities=19%  Similarity=0.214  Sum_probs=90.8

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHH-hcCCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..+.+||  |+|++++..++..+++.+|++++|||+++..++.....++..... ....+.|++||+||.|+.+..  
T Consensus        44 ~~~~~~~~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--  119 (165)
T d1ksha_          44 RGFKLNIWD--VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--  119 (165)
T ss_dssp             TTEEEEEEE--ECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--
T ss_pred             cccceeeee--cCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--
Confidence            345677777  899999999999999999999999999999999888777666543 333679999999999996533  


Q ss_pred             CHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           82 SKEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        82 ~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..++.....     ....+++++|||++|+||+++|++|++++..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         120 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            334333322     1223568999999999999999999988753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.83  E-value=2.9e-21  Score=133.25  Aligned_cols=113  Identities=18%  Similarity=0.281  Sum_probs=90.9

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      ++..+++||  ++|++.+...|..+++++|++++|||+++..+|..+..|+..+.+.. .+++|++||+||.|+.+.  .
T Consensus        45 ~~~~~~i~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~--~  120 (164)
T d1zd9a1          45 GNVTIKLWD--IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--L  120 (164)
T ss_dssp             TTEEEEEEE--ECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--C
T ss_pred             eeEEEEEee--ccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh--h
Confidence            455778888  89999999999999999999999999999999999988888775543 367999999999998653  2


Q ss_pred             CHHHHHHH-----HHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           82 SKEEGEQF-----AKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        82 ~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ...+....     +...+.+++++||++|.||+++|++|++++
T Consensus       121 ~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            33333222     223345699999999999999999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.83  E-value=7.9e-21  Score=132.14  Aligned_cols=111  Identities=19%  Similarity=0.261  Sum_probs=89.5

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+++||  ++|++++..+|..+++.+|++|+|||+++..++..+..|+..+..... .++|++|++||+|+.+.  ..
T Consensus        59 ~~~~~i~d--~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~--~~  134 (176)
T d1fzqa_          59 GFKLNVWD--IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--AP  134 (176)
T ss_dssp             TEEEEEEE--CSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CC
T ss_pred             CeeEeEee--ccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccc--cc
Confidence            45677777  899999999999999999999999999999999999888877754432 56899999999999653  23


Q ss_pred             HHHHHHH-----HHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           83 KEEGEQF-----AKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        83 ~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..+..+.     ++...++++++||++|+||+++|++|+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            3333322     22234569999999999999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.81  E-value=1.7e-20  Score=130.41  Aligned_cols=112  Identities=19%  Similarity=0.324  Sum_probs=89.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      ...+.+||  ++|++.+...+..+++++|++|||||+++..++..+..|+....+. .....|++|++||+|+++.  ..
T Consensus        55 ~~~~~i~D--~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~  130 (173)
T d1e0sa_          55 NVKFNVWD--VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MK  130 (173)
T ss_dssp             TEEEEEEE--ESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CC
T ss_pred             ceeeEEec--CCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--cc
Confidence            45677888  8999999999999999999999999999999999998887776543 3357999999999999653  33


Q ss_pred             HHHHHHH-----HHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQF-----AKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..++...     +...++.+++|||++|+||+++|++|.+.+
T Consensus       131 ~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         131 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            3333322     222345689999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.73  E-value=2e-18  Score=117.33  Aligned_cols=111  Identities=18%  Similarity=0.283  Sum_probs=88.4

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK   83 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~   83 (163)
                      ..+.+||  ++|.+.+..++..+++.+++++++||.++..++..+..|+.++..... ...|+++++||.|+....  ..
T Consensus        44 ~~~~~~d--~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~  119 (160)
T d1r8sa_          44 ISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NA  119 (160)
T ss_dssp             CEEEEEE--CCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred             EEEEEec--CCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cH
Confidence            3455555  999999999999999999999999999999999999888877765443 568999999999986532  22


Q ss_pred             HHHH-----HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           84 EEGE-----QFAKENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        84 ~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      .++.     .+++..+++++++||++|+||+++|++|++++
T Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            3222     23344466799999999999999999998763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=3.1e-16  Score=109.64  Aligned_cols=118  Identities=17%  Similarity=0.137  Sum_probs=82.9

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHH-----------HHHHHHHHHHHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFN-----------HLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~-----------~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      ....+++||  |+|+++|..+|..|+++++++++|||+++..+|.           ....|...+........|+++++|
T Consensus        40 ~~~~~~i~D--~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~N  117 (195)
T d1svsa1          40 KDLHFKMFD--VGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN  117 (195)
T ss_dssp             TTEEEEEEE--ECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred             eeeeeeeec--cccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEec
Confidence            345677888  9999999999999999999999999999877652           223344444444446789999999


Q ss_pred             CCCCCCC---------------CccCHHHHHH-HHHHc----------CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHR---------------RAVSKEEGEQ-FAKEN----------GLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        72 K~D~~~~---------------~~v~~~~~~~-~~~~~----------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |.|+...               ......++.. +...+          .+.++++||+++.||+++|+.+...+++.
T Consensus       118 k~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         118 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             CHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            9985211               0111222221 11111          23477899999999999999998877653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.64  E-value=4e-16  Score=107.76  Aligned_cols=112  Identities=22%  Similarity=0.317  Sum_probs=83.8

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+||  ++|.+.+...+..++..++++++++|.++..++.....++........ ...|+++|+||.|++..  ..
T Consensus        58 ~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~  133 (177)
T d1zj6a1          58 NTRFLMWD--IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MT  133 (177)
T ss_dssp             TEEEEEEE--CCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CC
T ss_pred             ceEEEEec--cccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--Cc
Confidence            45666777  899999999999999999999999999999999887766655544332 57999999999998653  23


Q ss_pred             HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..+.....     ...+.+++++||++|+||+++|++|.+++
T Consensus       134 ~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         134 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            33333332     22345699999999999999999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=6.4e-16  Score=108.42  Aligned_cols=117  Identities=16%  Similarity=0.104  Sum_probs=86.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH-----------HHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE-----------TFNHLSSWLEDARQHANPNMSIMLVGNK   72 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~-----------s~~~~~~~~~~l~~~~~~~~p~ilv~nK   72 (163)
                      ...+++||  ++|++++..+|..+++++++++++||.++..           .++....|...+......+.|+++++||
T Consensus        44 ~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK  121 (200)
T d2bcjq2          44 SVIFRMVD--VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  121 (200)
T ss_dssp             SCEEEEEE--CCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEEC
T ss_pred             ceeeeecc--ccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecch
Confidence            45667777  9999999999999999999999999998753           4555666777776665578999999999


Q ss_pred             CCCCCCC----------------ccCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           73 CDLAHRR----------------AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        73 ~D~~~~~----------------~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      .|+.+.+                ......+..+...          ..+.++++||+++.||+++|+.+.+.+++.
T Consensus       122 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         122 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            9973211                1122222222211          123478999999999999999998887754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=3.5e-14  Score=95.89  Aligned_cols=111  Identities=19%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+.+..+||  +.|...+..++..+++.++++++++|.++..++.....++........ .+.|+++++||.|+..  ..
T Consensus        42 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~  117 (166)
T d2qtvb1          42 GNIKFTTFD--LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AV  117 (166)
T ss_dssp             TTCCEEEEE--CCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CC
T ss_pred             CCeeEEEEe--eccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cC
Confidence            455677777  899999999999999999999999999999998888777766655333 5789999999999854  33


Q ss_pred             CHHHHHHHHH------------HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249           82 SKEEGEQFAK------------ENGLLFLEASARTAQNVEEAFIKTAA  117 (163)
Q Consensus        82 ~~~~~~~~~~------------~~~~~~~~~Sa~~~~~i~~lf~~l~~  117 (163)
                      ...+......            ...+.+++|||++|+||+++|++|.+
T Consensus       118 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            4444433321            11235899999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.55  E-value=7.6e-15  Score=99.90  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=87.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHH-HhcCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~-~~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+|+  ++|.+.+...+..++..++++++++|+.+..++.....++.... .......|+++++||.|+.+..  .
T Consensus        48 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~--~  123 (169)
T d1upta_          48 NLKFQVWD--LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--T  123 (169)
T ss_dssp             TEEEEEEE--ECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--C
T ss_pred             ceEEEEee--ccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc--c
Confidence            45667777  78999999999999999999999999998888877766544443 3333568999999999986532  2


Q ss_pred             HHHHH-----HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGE-----QFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      ..+..     .++...+++++++||++|.||+++|++|++.+.+
T Consensus       124 ~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            22222     2334445679999999999999999999887643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=5e-15  Score=102.69  Aligned_cols=108  Identities=18%  Similarity=0.110  Sum_probs=73.2

Q ss_pred             ceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            5 QESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      ..+.+||  |||...        +......++++||++|||+|+++..+..+ ..|++.+++ ...++|+++|+||+|+.
T Consensus        53 ~~~~~~D--tpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~  128 (178)
T d1wf3a1          53 RQIVFVD--TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAA  128 (178)
T ss_dssp             EEEEEEE--CCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGC
T ss_pred             eeeeecc--cccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheec-cccchhhhhhhcccccc
Confidence            3455555  999633        33334556789999999999987644332 334444443 33568999999999985


Q ss_pred             CCCccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           77 HRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        77 ~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      +..   .+....+....+ ..++++||+++.||++++++|++.+
T Consensus       129 ~~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         129 KYP---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             SSH---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             cCH---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            521   233344444444 4589999999999999999997643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.46  E-value=2.8e-13  Score=93.32  Aligned_cols=112  Identities=21%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHH-hcCCCCeEEEEeeCCCCCCCCccC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVS   82 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ilv~nK~D~~~~~~v~   82 (163)
                      +..+.+|+  +.|++.+...+..+++..+++++++|.++...+.....++..... ....+.|+++++||.|++.  .+.
T Consensus        56 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~  131 (186)
T d1f6ba_          56 GMTFTTFD--LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AIS  131 (186)
T ss_dssp             TEEEEEEE--ECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCC
T ss_pred             cccccccc--ccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCC
Confidence            45667777  899999999999999999999999999999888877665544433 3336799999999999854  344


Q ss_pred             HHHHHHHHHHc-----------------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKEN-----------------GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        83 ~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ..++.......                 ++++++|||++|+||+++|+||.+++
T Consensus       132 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         132 EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            55544443221                 23589999999999999999998653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=3.1e-13  Score=93.51  Aligned_cols=112  Identities=15%  Similarity=0.051  Sum_probs=74.6

Q ss_pred             cceeeEeeecccchhh----hhhc---hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEeeCCC
Q 031249            4 SQESFFWSLLQAGQES----FRSI---TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCD   74 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~----~~~~---~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ilv~nK~D   74 (163)
                      +..+++||  |||..+    ...+   ....+..++++++++|..... +..+..+...+....  ..++|+++|+||+|
T Consensus        48 ~~~~~~~D--tpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D  124 (180)
T d1udxa2          48 EERFTLAD--IPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVD  124 (180)
T ss_dssp             SCEEEEEE--CCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCT
T ss_pred             CCeEEEcC--CCeeecCchHHHHHHHHHHHHHHhhhhhhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhh
Confidence            45677777  999432    1112   234578899999999986532 233333333332211  13479999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      +.++..  .++........+.+++++||++|.||+++++.|.+.+.
T Consensus       125 ~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         125 LLEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             TSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            965322  34444555667889999999999999999998877664

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.42  E-value=3e-13  Score=97.31  Aligned_cols=114  Identities=19%  Similarity=0.170  Sum_probs=77.9

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH----
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK----   83 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~----   83 (163)
                      ++..+||||+++|.......+..+|++|+|+|+.+.-.... ...+..+...   ++|+|+++||+|+........    
T Consensus        71 ~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~  146 (227)
T d1g7sa4          71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPF  146 (227)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCH
T ss_pred             ccccccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHH
Confidence            44555599999999888888999999999999987533332 3344455443   489999999999865322110    


Q ss_pred             ----------------HHHHHH---HHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249           84 ----------------EEGEQF---AKEN---------------GLLFLEASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus        84 ----------------~~~~~~---~~~~---------------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                                      ......   ....               ..+++++||.+|.|++++++.|.....+.+.+
T Consensus       147 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         147 METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                            000000   1111               13589999999999999999988776655554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=2e-14  Score=97.75  Aligned_cols=105  Identities=19%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             cceeeEeeecccchhhhh--------hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            4 SQESFFWSLLQAGQESFR--------SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~--------~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      +.++.+||  |+|.....        .....++.++|++++++|..+..++.....|...+... ....|+++|+||+|+
T Consensus        48 ~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl  124 (161)
T d2gj8a1          48 GMPLHIID--TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADI  124 (161)
T ss_dssp             TEEEEEEE--CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHH
T ss_pred             Cceeeecc--ccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhh
Confidence            44555555  89853322        23455688999999999999887776666555555443 356899999999998


Q ss_pred             CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      .++...       +.+..+.+++++||+++.||++++++|.+.
T Consensus       125 ~~~~~~-------~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         125 TGETLG-------MSEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             HCCCCE-------EEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhhHHH-------HHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            553221       111235679999999999999999999875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=2.6e-13  Score=94.99  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=76.3

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH----------HHHHHHHHHHHHHHh-cCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDARQH-ANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~l~~~-~~~~~p~ilv~n   71 (163)
                      .+..+++||  ++|++.+..+|..+++++++++++||.++..          .+.....++..+... ...+.|++|++|
T Consensus        42 ~~~~~~~~D--~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~N  119 (200)
T d1zcba2          42 KNVPFKMVD--VGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLN  119 (200)
T ss_dssp             TTEEEEEEE--ECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred             eeeeeeeec--ccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEec
Confidence            345677888  8999999999999999999999999998743          334444455554332 235799999999


Q ss_pred             CCCCCCCC----------------ccCHHHHHHHHHH-c----------CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           72 KCDLAHRR----------------AVSKEEGEQFAKE-N----------GLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        72 K~D~~~~~----------------~v~~~~~~~~~~~-~----------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      |.|+.+++                .-..+.+.++... +          .+.++++||+++.+|+++|+.+...+++.
T Consensus       120 K~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         120 KTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             CHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            99974210                0122333332221 1          13367899999999999999988777654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.39  E-value=1.1e-12  Score=90.96  Aligned_cols=111  Identities=15%  Similarity=0.059  Sum_probs=77.1

Q ss_pred             ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249            5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--   82 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--   82 (163)
                      ..+.++|  ++|+.+|.......+..+|++++|+|+.+....+. ...+..+..   .++|+++|+||+|+.+.....  
T Consensus        59 ~~~~~~d--~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~  132 (179)
T d1wb1a4          59 YRITLVD--APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRT  132 (179)
T ss_dssp             EEEEECC--CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHH
T ss_pred             ccccccc--cccccccccchhhhhhhccccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHH
Confidence            3455555  99999999988999999999999999987543332 223333333   358999999999986532211  


Q ss_pred             HHHHHHHHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           83 KEEGEQFAKEN----GLLFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        83 ~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                      .+....+.+..    +.+++++||++|.|++++++.|++.+-.
T Consensus       133 ~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         133 EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            11122222222    3469999999999999999999876543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=1.4e-12  Score=89.43  Aligned_cols=109  Identities=18%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             eeeEeeecccchhh---------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            6 ESFFWSLLQAGQES---------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~---------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      .+.+||  |+|...         +......++..+|+++++.+.+....... ..++..+...   ++|+++|+||+|+.
T Consensus        49 ~~~~~d--~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~  122 (171)
T d1mkya1          49 TFKLVD--TCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENL  122 (171)
T ss_dssp             EEEEEE--CTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSH
T ss_pred             cccccc--ccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhh
Confidence            455555  898422         22234556789999999999876544433 3455555554   37999999999985


Q ss_pred             CCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249           77 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  122 (163)
Q Consensus        77 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  122 (163)
                      .+  ...+....+.+....+++++||++|.||++++++|.+.+.+.
T Consensus       123 ~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         123 RE--FEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             HH--HHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             hh--hhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCC
Confidence            31  112222223222334589999999999999999998866443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=3.6e-12  Score=88.00  Aligned_cols=110  Identities=16%  Similarity=0.122  Sum_probs=70.4

Q ss_pred             cceeeEeeecccch-----------hh----hhhchhhhccCCcEEEEEEECCChHHHHHH----------HHHHHHHHH
Q 031249            4 SQESFFWSLLQAGQ-----------ES----FRSITRSYYRGAAGALLVYDITRRETFNHL----------SSWLEDARQ   58 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~-----------e~----~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~----------~~~~~~l~~   58 (163)
                      ...++|||  |||.           ++    +.......++.+|++++|+|..........          ..+++.+.+
T Consensus        42 ~~~~~ivD--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  119 (184)
T d2cxxa1          42 WKNHKIID--MPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE  119 (184)
T ss_dssp             ETTEEEEE--CCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             cccceecc--cCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH
Confidence            34577887  8983           22    222344556789999999998764322211          122333333


Q ss_pred             hcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCC-------eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249           59 HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-------LFLEASARTAQNVEEAFIKTAAKILQ  121 (163)
Q Consensus        59 ~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~-------~~~~~Sa~~~~~i~~lf~~l~~~~~~  121 (163)
                         .++|+++|+||+|+.+..+   .....+....+.       .++++||++|.||+++++.|.+.+.+
T Consensus       120 ---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         120 ---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             ---TTCCEEEEEECGGGCSCHH---HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ---cCCCEEEEEeeeehhhhHH---HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence               3589999999999765322   222223333322       38899999999999999999887764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=7.6e-13  Score=94.78  Aligned_cols=118  Identities=13%  Similarity=0.111  Sum_probs=80.5

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH----------HHHHHHHHHHHH-HHhcCCCCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDA-RQHANPNMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~l-~~~~~~~~p~ilv~n   71 (163)
                      .+..+++||  ++|++.++..|..++++++++++++|.++..          ...+...++..+ ......++|++|++|
T Consensus        45 ~~~~~~~~D--~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~N  122 (221)
T d1azta2          45 DKVNFHMFD--VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN  122 (221)
T ss_dssp             TTEEEEEEE--CCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEE
T ss_pred             CcEEEEEEe--cCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEec
Confidence            466778888  8999999999999999999999999997642          222333333333 333335799999999


Q ss_pred             CCCCCCCCc----cC--------------------------HHHHHHH-----HHHcC--------CeEEEEcCCCCCCH
Q 031249           72 KCDLAHRRA----VS--------------------------KEEGEQF-----AKENG--------LLFLEASARTAQNV  108 (163)
Q Consensus        72 K~D~~~~~~----v~--------------------------~~~~~~~-----~~~~~--------~~~~~~Sa~~~~~i  108 (163)
                      |+|+.+.+.    ..                          ..++..+     .....        +-++++||.+..+|
T Consensus       123 K~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni  202 (221)
T d1azta2         123 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI  202 (221)
T ss_dssp             CHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHH
T ss_pred             hhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHH
Confidence            999843211    11                          1222222     11111        22568899999999


Q ss_pred             HHHHHHHHHHHHHH
Q 031249          109 EEAFIKTAAKILQN  122 (163)
Q Consensus       109 ~~lf~~l~~~~~~~  122 (163)
                      ..+|+.+...|++.
T Consensus       203 ~~vf~~v~d~I~~~  216 (221)
T d1azta2         203 RRVFNDCRDIIQRM  216 (221)
T ss_dssp             HHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999987777765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.29  E-value=5e-12  Score=88.63  Aligned_cols=109  Identities=14%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--CHHH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEE   85 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~~~~   85 (163)
                      ++-.+||||+++|.......+..+|++++|.|+.+........+.+..+....  ..+++++.||+|+.+....  ....
T Consensus        79 ~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~  156 (195)
T d1kk1a3          79 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQ  156 (195)
T ss_dssp             EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             eEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHH
Confidence            34445599999999988888899999999999987532233344444444433  2457889999998653211  1122


Q ss_pred             HHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           86 GEQFAKENG---LLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        86 ~~~~~~~~~---~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ...+....+   ++++++||++|+|++++++.+.+.
T Consensus       157 ~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         157 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            333443332   569999999999999998888664

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.27  E-value=1.1e-11  Score=87.68  Aligned_cols=108  Identities=16%  Similarity=0.105  Sum_probs=72.9

Q ss_pred             EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHH
Q 031249            9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEG   86 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~   86 (163)
                      +-.+||||+..|.......+..+|++|+|+|+.+.-.-....+.+..+....  ..|+||+.||+|+.+.....  ....
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~~~  165 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQI  165 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHHHH
Confidence            3445599999999888888889999999999987521222233444443332  24889999999996532211  1112


Q ss_pred             HHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           87 EQFAKEN---GLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        87 ~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      ..+....   .++++++||++|.||+++++.+...
T Consensus       166 ~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         166 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            2222222   3569999999999999999887764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=5.2e-11  Score=80.26  Aligned_cols=104  Identities=19%  Similarity=0.096  Sum_probs=68.6

Q ss_pred             cceeeEeeecccchhh--------hh-hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249            4 SQESFFWSLLQAGQES--------FR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD   74 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~--------~~-~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D   74 (163)
                      +..+.+||  |||...        +. ......++.+|++++|+|+++......... ...+     ...++++++||.|
T Consensus        47 ~~~~~~~D--t~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~-~~~~-----~~~~~i~~~~k~d  118 (160)
T d1xzpa2          47 GILFRIVD--TAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI-----KNKRYLVVINKVD  118 (160)
T ss_dssp             TEEEEEEE--SSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH-----TTSSEEEEEEECS
T ss_pred             CeeEEecc--ccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhh-hhhc-----ccccceeeeeecc
Confidence            44566666  999421        10 112234678999999999998765544322 1111     3478999999999


Q ss_pred             CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249           75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  118 (163)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  118 (163)
                      +.+.  ...++.... ...+.+++++||++|.||++++++|.++
T Consensus       119 ~~~~--~~~~~~~~~-~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         119 VVEK--INEEEIKNK-LGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             SCCC--CCHHHHHHH-HTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             ccch--hhhHHHHHH-hCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            8663  233333322 1234679999999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=5.6e-11  Score=82.09  Aligned_cols=109  Identities=17%  Similarity=0.042  Sum_probs=70.6

Q ss_pred             eEeeecccchhhhhh------------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            8 FFWSLLQAGQESFRS------------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~------------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      .++.+||+|......            .+..+++.+|++++|+|++....-. ...++..+...   +.|+|+|+||+|+
T Consensus        57 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~~---~~~~i~v~nK~D~  132 (186)
T d1mkya2          57 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERR---GRASVVVFNKWDL  132 (186)
T ss_dssp             EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---TCEEEEEEECGGG
T ss_pred             eeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHHc---CCceeeeccchhh
Confidence            344455899644332            3444568899999999998653322 23344444443   4899999999998


Q ss_pred             CCCCccCHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249           76 AHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVEEAFIKTAAKIL  120 (163)
Q Consensus        76 ~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~~l~~~~~  120 (163)
                      .........+......+.     ..+++++||++|.|+++++++|.+.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         133 VVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             STTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            665544445544443332     246999999999999999999955443

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2.8e-10  Score=79.90  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             cceeeEeeecccchhhhh-hchhhhccCCcEEEEEEECCChHHH-HHHHHHHHHH-HHhc--CCCCeEEEEeeCCCCCCC
Q 031249            4 SQESFFWSLLQAGQESFR-SITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDA-RQHA--NPNMSIMLVGNKCDLAHR   78 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~-~~~~~~~~~ad~~i~v~d~~~~~s~-~~~~~~~~~l-~~~~--~~~~p~ilv~nK~D~~~~   78 (163)
                      +..+.+||  ++|++++. .++..+++.++++++|+|+++..++ .+...++..+ ....  ...+|++|++||+|++..
T Consensus        46 ~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          46 GNSLTLID--LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             CCEEEEEE--CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             eeeeeeee--ccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            45677777  89999986 5788899999999999999997764 4544544444 2222  245899999999999753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=6.3e-11  Score=81.89  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             cceeeEeeecccchhhhhh----chh---hhccCCcEEEEEEECCChHHHHH--HHHHHHHHHHh---cCCCCeEEEEee
Q 031249            4 SQESFFWSLLQAGQESFRS----ITR---SYYRGAAGALLVYDITRRETFNH--LSSWLEDARQH---ANPNMSIMLVGN   71 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~----~~~---~~~~~ad~~i~v~d~~~~~s~~~--~~~~~~~l~~~---~~~~~p~ilv~n   71 (163)
                      +..+++||  |||..+...    +..   ..+..++.++++++.........  ...+.......   ...++|+++|+|
T Consensus        48 ~~~~~~~D--tpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~N  125 (185)
T d1lnza2          48 GRSFVMAD--LPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN  125 (185)
T ss_dssp             SCEEEEEE--HHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred             CcEEEEec--CCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhcc
Confidence            34577777  999643222    222   23457899998887654332211  11111111111   113689999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           72 KCDLAHRRAVSKEEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        72 K~D~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      |+|+.+.    .+....+.+..  +.+++.+||++|.||+++++.+.+.+
T Consensus       126 K~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         126 KMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             CTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             ccchHhH----HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            9998652    23334444444  56799999999999999999887765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.05  E-value=1.3e-10  Score=81.52  Aligned_cols=107  Identities=17%  Similarity=0.110  Sum_probs=72.3

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC---HH
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---KE   84 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~---~~   84 (163)
                      ++-.+||||++.|.......+..+|++|+|+|+.+.-. ....+.+..+....  ..|+|++.||+|+..+.+..   ..
T Consensus        67 ~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~  143 (196)
T d1d2ea3          67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVEL  143 (196)
T ss_dssp             EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred             eEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHH
Confidence            34444599999999888888999999999999987532 22233444444432  35899999999986532211   12


Q ss_pred             HHHHHHHHcC-----CeEEEEcCCCC----------CCHHHHHHHHHH
Q 031249           85 EGEQFAKENG-----LLFLEASARTA----------QNVEEAFIKTAA  117 (163)
Q Consensus        85 ~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~lf~~l~~  117 (163)
                      ++..++...+     ++++++||++|          .++.++++.+.+
T Consensus       144 ~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            3445555554     45899999887          477777766644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=1.6e-09  Score=75.23  Aligned_cols=90  Identities=10%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHH----cCCeEEEE
Q 031249           25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NGLLFLEA  100 (163)
Q Consensus        25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~----~~~~~~~~  100 (163)
                      ...+..+|++++|+|+.....- ....+++.+...   ++|+++|+||+|+.++... .+....+.+.    ...+++++
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEEC
T ss_pred             hccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEEE
Confidence            3455678999999998764322 223455555554   4899999999998553332 2222333333    33569999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q 031249          101 SARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus       101 Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ||+++.|+++++++|.+.+
T Consensus       175 SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999997765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.90  E-value=4.3e-09  Score=74.99  Aligned_cols=98  Identities=18%  Similarity=0.109  Sum_probs=65.7

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCCccC--
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAHRRAVS--   82 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p~ilv~nK~D~~~~~~v~--   82 (163)
                      .+.|.|  |||++.|......-+..+|++++|+|+.+...-+ ..+.+..+...   ++ .+|++.||+|+.+..+..  
T Consensus        90 ~~~iiD--~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~~---gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          90 KFIIAD--TPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             EEEEEE--CCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             EEEEEe--ccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHHHc---CCCEEEEEEEccccccccceehh
Confidence            444555  9999999988888899999999999998753222 22223333322   33 478899999997632211  


Q ss_pred             --HHHHHHHHHHcCC-----eEEEEcCCCCCCHH
Q 031249           83 --KEEGEQFAKENGL-----LFLEASARTAQNVE  109 (163)
Q Consensus        83 --~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~  109 (163)
                        .++...+++..++     +++++||.+|.||.
T Consensus       164 ~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence              1233445555554     47999999999874

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=1.4e-09  Score=76.65  Aligned_cols=95  Identities=16%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCcc
Q 031249            3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV   81 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v   81 (163)
                      ++..+.|.|  |||+++|.......+..+|++|+|+|+.+.-..+. .+.+..+...   ++| +++++||+|+.+..+.
T Consensus        65 ~~~~i~iiD--tPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~  138 (204)
T d2c78a3          65 AKRHYSHVD--CPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPEL  138 (204)
T ss_dssp             SSCEEEEEE--CCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHH
T ss_pred             CCeEEEEEe--CCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEecccCCCHHH
Confidence            344556655  99999999988889999999999999987654433 3344444443   355 7778999998653221


Q ss_pred             ---CHHHHHHHHHHcC-----CeEEEEcCC
Q 031249           82 ---SKEEGEQFAKENG-----LLFLEASAR  103 (163)
Q Consensus        82 ---~~~~~~~~~~~~~-----~~~~~~Sa~  103 (163)
                         ..+++..+....+     ++++..|+.
T Consensus       139 ~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~  168 (204)
T d2c78a3         139 LDLVEMEVRDLLNQYEFPGDEVPVIRGSAL  168 (204)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred             HHHHHHHHHHHHHhcCCCcccceeeeeech
Confidence               1233444444444     347877764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=6.4e-09  Score=70.85  Aligned_cols=91  Identities=20%  Similarity=0.133  Sum_probs=61.5

Q ss_pred             hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcC-CeEEEEcC
Q 031249           24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASA  102 (163)
Q Consensus        24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa  102 (163)
                      ...+...+++++++.|..+...  ....+...+.+   ...|.++++||.|....+.........+...++ .+++++||
T Consensus        79 ~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA  153 (179)
T d1egaa1          79 ASSSIGDVELVIFVVEGTRWTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISA  153 (179)
T ss_dssp             TTSCCCCEEEEEEEEETTCCCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred             cccchhhcceeEEEEecCccch--hHHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeC
Confidence            3344567888889999776432  22233344433   347899999999987654333344455555555 46999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 031249          103 RTAQNVEEAFIKTAAKI  119 (163)
Q Consensus       103 ~~~~~i~~lf~~l~~~~  119 (163)
                      ++|.|++++++.+.+.+
T Consensus       154 ~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         154 ETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTTHHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHHhC
Confidence            99999999998886643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=2.3e-08  Score=73.24  Aligned_cols=67  Identities=16%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      +..+.|.|  |||+..|..-....++-+|++|+|+|+.+.-.... ...++...++   ++|.++++||.|..
T Consensus        70 ~~~~n~iD--tPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~~---~lP~i~fINKmDr~  136 (276)
T d2bv3a2          70 DHRINIID--APGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEKY---KVPRIAFANKMDKT  136 (276)
T ss_dssp             TEEEEEEC--CCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHTT---TCCEEEEEECTTST
T ss_pred             CeEEEEec--CCchhhhHHHHHHHHHhhhheEEeccccCCcchhH-HHHHHHHHHc---CCCEEEEEeccccc
Confidence            44455555  99999999999999999999999999988643332 2344445443   59999999999985

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.69  E-value=6.3e-08  Score=70.61  Aligned_cols=67  Identities=18%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249            4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA   76 (163)
Q Consensus         4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~   76 (163)
                      +..+.|+|  |||+..|..-....++-+|++|+|+|+.+.-.... ...++.+.+.   ++|.++++||+|..
T Consensus        66 ~~~~n~iD--tPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          66 GHRVFLLD--APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             TEEEEEEE--CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             ccceeEEc--cCchhhhhhhhhhhhcccCceEEEeeccCCccchh-HHHHHhhhhc---cccccccccccccc
Confidence            44566666  99999999999999999999999999987644433 3344455554   48999999999964

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.68  E-value=3.5e-08  Score=71.16  Aligned_cols=102  Identities=25%  Similarity=0.226  Sum_probs=55.6

Q ss_pred             eEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHH---HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249            8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV   81 (163)
Q Consensus         8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v   81 (163)
                      .+..+||||+..|......-...+|++++|+|+.+..   ++.   ...+.+..+....  -.+++++.||+|++... .
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~--i~~iiv~iNKmD~~~~~-~  179 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG--INHLVVVINKMDEPSVQ-W  179 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT--CSSEEEEEECTTSTTCS-S
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC--CCeEEEEEEcCCCCccc-h
Confidence            4455569999999998888899999999999998742   111   2223333333322  13578999999986421 1


Q ss_pred             CHH-------HHHHHHHHc-C------CeEEEEcCCCCCCHHHHH
Q 031249           82 SKE-------EGEQFAKEN-G------LLFLEASARTAQNVEEAF  112 (163)
Q Consensus        82 ~~~-------~~~~~~~~~-~------~~~~~~Sa~~~~~i~~lf  112 (163)
                      ..+       +...+.... +      ++++++||++|+||.+++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            111       222222222 2      468999999999997654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=5.4e-08  Score=67.62  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=53.6

Q ss_pred             CccceeeEeeecccchhhhhhchhhhc----cCCcEEEEEEECCC-hHHHHHHHHHHHH----HHHhcCCCCeEEEEeeC
Q 031249            2 FFSQESFFWSLLQAGQESFRSITRSYY----RGAAGALLVYDITR-RETFNHLSSWLED----ARQHANPNMSIMLVGNK   72 (163)
Q Consensus         2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~----~~ad~~i~v~d~~~-~~s~~~~~~~~~~----l~~~~~~~~p~ilv~nK   72 (163)
                      +++..+.+||  |||++++...+..++    ..++.+++++|..+ ..++.+...|+..    +......++|+++|+||
T Consensus        43 ~~~~~~~l~D--~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK  120 (209)
T d1nrjb_          43 YDGSGVTLVD--FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK  120 (209)
T ss_dssp             GGGSSCEEEE--CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred             eCCeEEEEEe--cccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence            3566788888  899998877665544    45689999999764 5555555555433    34444467999999999


Q ss_pred             CCCCCC
Q 031249           73 CDLAHR   78 (163)
Q Consensus        73 ~D~~~~   78 (163)
                      +|+.+.
T Consensus       121 ~D~~~~  126 (209)
T d1nrjb_         121 SELFTA  126 (209)
T ss_dssp             TTSTTC
T ss_pred             eccccc
Confidence            998653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.64  E-value=2.6e-08  Score=70.79  Aligned_cols=101  Identities=19%  Similarity=0.221  Sum_probs=65.5

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHH---HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      ..+-.+||||+..|......-++-+|++|+|+|+.+..   ++.   ...+.+......  ...++|++.||+|+.....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCccc
Confidence            34555569999999999999999999999999999752   111   122222222222  2246888999999864211


Q ss_pred             c--C----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 031249           81 V--S----KEEGEQFAKENG-----LLFLEASARTAQNVE  109 (163)
Q Consensus        81 v--~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  109 (163)
                      .  .    ..+...+...++     ++++++||..|.||.
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            1  1    122334444444     358899999999875

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=5.5e-08  Score=69.87  Aligned_cols=101  Identities=18%  Similarity=0.110  Sum_probs=66.3

Q ss_pred             eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHH---H---HHHHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCC
Q 031249            7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNM-SIMLVGNKCDLAHRR   79 (163)
Q Consensus         7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~-p~ilv~nK~D~~~~~   79 (163)
                      .++..+||||+..|...+..-+..+|++|+|+|+....-   +   ....+.+......   ++ ++|++.||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCC
Confidence            344555599999999988899999999999999986421   1   1122333333332   34 578899999986532


Q ss_pred             ccC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 031249           80 AVS----KEEGEQFAKENG-----LLFLEASARTAQNVEE  110 (163)
Q Consensus        80 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  110 (163)
                      ...    ..+...++...+     ++++++|+.++.|+.+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            211    123444555555     3489999999988644

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=1.9e-07  Score=66.22  Aligned_cols=88  Identities=18%  Similarity=0.189  Sum_probs=62.9

Q ss_pred             chhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHH--cCCeEEE
Q 031249           23 ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLE   99 (163)
Q Consensus        23 ~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~--~~~~~~~   99 (163)
                      +.+..+.+.|.+++|+++.+++ +...+..++-.....   ++|.+||+||+|+.++.+  .+....+...  .+++++.
T Consensus         3 l~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~   77 (225)
T d1u0la2           3 LTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVK   77 (225)
T ss_dssp             ETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEE
T ss_pred             cCCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEE
Confidence            3455678999999999987754 456667777666554   489999999999965221  2223333332  3478999


Q ss_pred             EcCCCCCCHHHHHHHH
Q 031249          100 ASARTAQNVEEAFIKT  115 (163)
Q Consensus       100 ~Sa~~~~~i~~lf~~l  115 (163)
                      +|++++.+++++...+
T Consensus        78 vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          78 TSAKTGMGIEELKEYL   93 (225)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             eccccchhHhhHHHHh
Confidence            9999999998887765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=9.8e-07  Score=64.25  Aligned_cols=92  Identities=13%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHH---cCCeEEE
Q 031249           23 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE---NGLLFLE   99 (163)
Q Consensus        23 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~---~~~~~~~   99 (163)
                      .+...++.+|+||+|.|+-++.+...  ..+..+.    .++|+++|+||+|+.+     .+....|.+.   .+..++.
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~-----~~~~~~w~~~f~~~~~~~i~   76 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKAD-----AAVTQQWKEHFENQGIRSLS   76 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSC-----HHHHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCc-----hHHHHHHHHHHHhcCCccce
Confidence            35667999999999999988766543  2223332    2479999999999854     3444444443   4567899


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249          100 ASARTAQNVEEAFIKTAAKILQNIQE  125 (163)
Q Consensus       100 ~Sa~~~~~i~~lf~~l~~~~~~~~~~  125 (163)
                      +++.++.++..+...+...+.+....
T Consensus        77 isa~~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          77 INSVNGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHHHH
T ss_pred             eecccCCCccccchhhhhhhhhhhhh
Confidence            99999999998888877766655444

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=5.5e-07  Score=67.68  Aligned_cols=66  Identities=23%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249            6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL   75 (163)
Q Consensus         6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~   75 (163)
                      ...|..+||||+..|.......++-+|++|+|+|+...-..+.. ..++...+.   +.|+++++||+|.
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~~---~~p~i~viNKiDr  160 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE---RIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCEEEEEEECHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHHc---CCCeEEEEECccc
Confidence            44566667999999999999999999999999999986555433 334444443   4899999999995

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.18  E-value=6.8e-06  Score=57.80  Aligned_cols=109  Identities=12%  Similarity=0.007  Sum_probs=63.4

Q ss_pred             Eeeecccchhhhhhchhhh-----ccCCcEEEEEEECC---ChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249            9 FWSLLQAGQESFRSITRSY-----YRGAAGALLVYDIT---RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus         9 l~d~Dt~G~e~~~~~~~~~-----~~~ad~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      +..+|++|+..+.......     ....+.++++.|+.   +++.+.........+...  -..|.++++||+|+.....
T Consensus        97 ~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~~  174 (244)
T d1yrba1          97 YVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEE  174 (244)
T ss_dssp             EEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHH
T ss_pred             eeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHHH
Confidence            4445599987764432221     22466899999874   444444332222222111  2479999999999864211


Q ss_pred             cCHH--------------------------HHHHHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249           81 VSKE--------------------------EGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAKI  119 (163)
Q Consensus        81 v~~~--------------------------~~~~~~~~--~~~~~~~~Sa~~~~~i~~lf~~l~~~~  119 (163)
                      ....                          ........  ..++++++||++|+|+++++..|.++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            1000                          00001111  246799999999999999999887653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=3.5e-07  Score=65.06  Aligned_cols=89  Identities=12%  Similarity=0.160  Sum_probs=62.8

Q ss_pred             chhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH---HHHHHcCCeEE
Q 031249           23 ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE---QFAKENGLLFL   98 (163)
Q Consensus        23 ~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~---~~~~~~~~~~~   98 (163)
                      +.+....+.|.+++|+++.++. ++..+..++-....   .+++.+||+||+|+.++.+ ..+...   ......|++++
T Consensus         3 l~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~   78 (231)
T d1t9ha2           3 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVY   78 (231)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccce
Confidence            3455678999999999987753 56666666666554   3589999999999965322 122222   23345689999


Q ss_pred             EEcCCCCCCHHHHHHHH
Q 031249           99 EASARTAQNVEEAFIKT  115 (163)
Q Consensus        99 ~~Sa~~~~~i~~lf~~l  115 (163)
                      .+|+.++.|++++...|
T Consensus        79 ~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          79 LTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             ECCHHHHTTCTTTGGGG
T ss_pred             eeecCChhHHHHHHHhh
Confidence            99999999888776544

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=2.2e-05  Score=52.66  Aligned_cols=86  Identities=15%  Similarity=0.043  Sum_probs=51.9

Q ss_pred             cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHc--CCeEEEEcCCC
Q 031249           29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKEN--GLLFLEASART  104 (163)
Q Consensus        29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~--~~~~~~~Sa~~  104 (163)
                      ...+.++++.+........ ...++..+...   ..++++++||.|+.+.....  .+...+....+  ..+++++||++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~  172 (188)
T d1puia_          97 QSLQGLVVLMDIRHPLKDL-DQQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLK  172 (188)
T ss_dssp             TTEEEEEEEEETTSCCCHH-HHHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTT
T ss_pred             hheeEEEEeecccccchhH-HHHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence            4555666666665543222 23444444443   47899999999986532211  11222222222  24589999999


Q ss_pred             CCCHHHHHHHHHHH
Q 031249          105 AQNVEEAFIKTAAK  118 (163)
Q Consensus       105 ~~~i~~lf~~l~~~  118 (163)
                      |.||+++++.|...
T Consensus       173 g~Gid~L~~~i~~~  186 (188)
T d1puia_         173 KQGVDKLRQKLDTW  186 (188)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999987543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=0.0004  Score=52.75  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=62.1

Q ss_pred             ceeeEeeecccchhhhhh-----chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC--
Q 031249            5 QESFFWSLLQAGQESFRS-----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH--   77 (163)
Q Consensus         5 ~~~~l~d~Dt~G~e~~~~-----~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~--   77 (163)
                      .++.|||  |||......     +....+..+|.+|++.|..-..  .+ ..+++.+.+.   ++|+++|.||+|...  
T Consensus       107 ~~~~l~D--tPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~--~d-~~l~~~l~~~---~k~~~~V~nK~D~~~~~  178 (400)
T d1tq4a_         107 PNVVFWD--LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK--ND-IDIAKAISMM---KKEFYFVRTKVDSDITN  178 (400)
T ss_dssp             TTEEEEE--CCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCH--HH-HHHHHHHHHT---TCEEEEEECCHHHHHHH
T ss_pred             CeEEEEe--CCCcccccccHHHHHHHhhhhcceEEEEecCCCCCH--HH-HHHHHHHHHc---CCCEEEEEeCcccccch
Confidence            3577887  999654332     2233466789998888754322  22 2345555553   489999999999521  


Q ss_pred             -----CCccCHHH----H----HHHHHHcCC---eEEEEcCCCC--CCHHHHHHHHHHHHH
Q 031249           78 -----RRAVSKEE----G----EQFAKENGL---LFLEASARTA--QNVEEAFIKTAAKIL  120 (163)
Q Consensus        78 -----~~~v~~~~----~----~~~~~~~~~---~~~~~Sa~~~--~~i~~lf~~l~~~~~  120 (163)
                           ......+.    .    .......+.   +++.+|..+.  .++..+.+.+.+.+.
T Consensus       179 ~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         179 EADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             hhhcccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence                 11112211    1    222333343   3788887553  478887777766643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.56  E-value=6.9e-05  Score=55.55  Aligned_cols=93  Identities=8%  Similarity=0.007  Sum_probs=56.8

Q ss_pred             hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHH----------cCCe
Q 031249           27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----------NGLL   96 (163)
Q Consensus        27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~----------~~~~   96 (163)
                      ....+|.+++|......+..+.   ....+.+     .+=++|.||.|+.+...........+...          +..+
T Consensus       161 ~~~~~D~~v~v~~p~~GD~iQ~---~k~gilE-----~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  232 (323)
T d2qm8a1         161 VADLTDFFLVLMLPGAGDELQG---IKKGIFE-----LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPP  232 (323)
T ss_dssp             HHTTSSEEEEEECSCC---------CCTTHHH-----HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCC
T ss_pred             hhcccceEEEEeeccchhhhhh---hhhhHhh-----hhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCc
Confidence            4456899999999887654432   2222222     23388999999865322221211112211          3456


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           97 FLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        97 ~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ++.+||.++.|++++++++.+........+.
T Consensus       233 V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G~  263 (323)
T d2qm8a1         233 VVTISGLHGKGLDSLWSRIEDHRSKLTATGE  263 (323)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHHHHHCCh
Confidence            9999999999999999999887766554443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00011  Score=54.61  Aligned_cols=94  Identities=14%  Similarity=0.028  Sum_probs=55.9

Q ss_pred             hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--CHHHHHHHHH-------HcCCe
Q 031249           26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAK-------ENGLL   96 (163)
Q Consensus        26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~~~~~~~~~~-------~~~~~   96 (163)
                      .....+|.+++|..+...+..+.+.   .-+.+.     +=++|+||.|.......  ...+......       .+..+
T Consensus       163 ~i~~~aD~~l~v~~P~~Gd~iq~~k---~gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~  234 (327)
T d2p67a1         163 EVARMVDCFISLQIAGGGDDLQGIK---KGLMEV-----ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR  234 (327)
T ss_dssp             HHHTTCSEEEEEECC------CCCC---HHHHHH-----CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred             hhhhccceEEEEecCCCchhhhhhc---hhhhcc-----ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcce
Confidence            3567899999999876655444332   233332     23788899998542111  1122222222       12346


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249           97 FLEASARTAQNVEEAFIKTAAKILQNIQEGA  127 (163)
Q Consensus        97 ~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~  127 (163)
                      ++.+||.+++||+++++.|.++.......+.
T Consensus       235 V~~~SA~~g~Gi~eL~~~I~~~~~~l~~sG~  265 (327)
T d2p67a1         235 VLTCSALEKRGIDEIWHAIIDFKTALTASGR  265 (327)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHHHHHHHTTH
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHhCCH
Confidence            9999999999999999999877665554433

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.83  E-value=0.0022  Score=45.47  Aligned_cols=80  Identities=8%  Similarity=-0.081  Sum_probs=44.1

Q ss_pred             ccceeeEeeecccchhhhh-------hchhh--hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEee
Q 031249            3 FSQESFFWSLLQAGQESFR-------SITRS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP--NMSIMLVGN   71 (163)
Q Consensus         3 ~~~~~~l~d~Dt~G~e~~~-------~~~~~--~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ilv~n   71 (163)
                      ++..+.|+|  |||.....       .....  .....|+++||++++...--......++.+....+.  -.++++|.|
T Consensus        78 ~g~~i~viD--TPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t  155 (257)
T d1h65a_          78 AGFTLNIID--TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT  155 (257)
T ss_dssp             TTEEEEEEE--CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred             ccEEEEEEe--eecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEE
Confidence            345666666  99943211       11111  234678999999887532111122333444333221  257999999


Q ss_pred             CCCCCCCCccCHH
Q 031249           72 KCDLAHRRAVSKE   84 (163)
Q Consensus        72 K~D~~~~~~v~~~   84 (163)
                      |.|...+.....+
T Consensus       156 ~~D~~~~~~~~~e  168 (257)
T d1h65a_         156 HAQFSPPDGLPYD  168 (257)
T ss_dssp             CCSCCCGGGCCHH
T ss_pred             CcccCCcCCCcHH
Confidence            9998765444443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.012  Score=42.08  Aligned_cols=57  Identities=12%  Similarity=0.037  Sum_probs=35.4

Q ss_pred             hhchhhhccCCcE-EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249           21 RSITRSYYRGAAG-ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA   80 (163)
Q Consensus        21 ~~~~~~~~~~ad~-~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~   80 (163)
                      ..++..|+.+.+. +++|.++...-+-.....+.+.+   .+...++++|.||+|...+..
T Consensus       152 ~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~---~~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         152 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH---CTTCSSEEEEEECGGGSCTTC
T ss_pred             HHHHHHHhcCccceeeeecccccchhhhHHHHHHHHh---CcCCCceeeEEeccccccchh
Confidence            3567778877775 45566665544444444444444   333468999999999865433

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.01  E-value=0.015  Score=41.76  Aligned_cols=68  Identities=10%  Similarity=0.096  Sum_probs=41.4

Q ss_pred             eeeEeeecccchh-------------hhhhchhhhccCCcEEEEEE-ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249            6 ESFFWSLLQAGQE-------------SFRSITRSYYRGAAGALLVY-DITRRETFNHLSSWLEDARQHANPNMSIMLVGN   71 (163)
Q Consensus         6 ~~~l~d~Dt~G~e-------------~~~~~~~~~~~~ad~~i~v~-d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n   71 (163)
                      .+.|+|  |||.-             ....++..|+.+++.+|+++ +......-.....+.+.+   .+...++++|.|
T Consensus       132 ~l~iiD--tPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vit  206 (306)
T d1jwyb_         132 NLTLVD--LPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVIT  206 (306)
T ss_dssp             SEEEEE--CCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEE
T ss_pred             CceEec--CCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEe
Confidence            455666  99931             23457888999999877776 433222222223333333   333468999999


Q ss_pred             CCCCCCC
Q 031249           72 KCDLAHR   78 (163)
Q Consensus        72 K~D~~~~   78 (163)
                      |+|....
T Consensus       207 k~D~~~~  213 (306)
T d1jwyb_         207 KLDLMDK  213 (306)
T ss_dssp             CTTSSCS
T ss_pred             ccccccc
Confidence            9998643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.63  E-value=0.69  Score=30.78  Aligned_cols=73  Identities=15%  Similarity=0.059  Sum_probs=45.8

Q ss_pred             eeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCccCHHHHHH
Q 031249           10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVSKEEGEQ   88 (163)
Q Consensus        10 ~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~~~~v~~~~~~~   88 (163)
                      ..+|+++...  ......+..+|.++++...+ ..++..+.+.++.+.+.   +.|++ +|.|+.+..+ ..+.....+.
T Consensus       115 IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~~~~~  187 (237)
T d1g3qa_         115 ILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPEAAED  187 (237)
T ss_dssp             EEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHHHHHH
T ss_pred             EEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhHHHHh
Confidence            3344776432  23344566799999999865 66777777777766653   46665 7899998644 3444444443


Q ss_pred             H
Q 031249           89 F   89 (163)
Q Consensus        89 ~   89 (163)
                      +
T Consensus       188 ~  188 (237)
T d1g3qa_         188 V  188 (237)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.04  E-value=1.9  Score=29.89  Aligned_cols=41  Identities=12%  Similarity=0.123  Sum_probs=27.7

Q ss_pred             CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCC
Q 031249           63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  103 (163)
Q Consensus        63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  103 (163)
                      .+|+++++|..+......-..+....++...+..++.+||+
T Consensus       199 ~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             cchhhhhhccccccccccHHHHHHHHHHHhcCCeEEEeEHH
Confidence            57999999975532211122456667777888889999984

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.57  E-value=1.7  Score=29.17  Aligned_cols=68  Identities=19%  Similarity=0.046  Sum_probs=41.9

Q ss_pred             CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 031249           31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  110 (163)
Q Consensus        31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  110 (163)
                      -+-.++|.|++..  ..++.+........    -+-=++.||.|...    ..=.+..++...++|+..++  +|+++++
T Consensus       130 p~~~~LVl~a~~~--~~~~~~~~~~~~~~----~~~~lI~TKlDe~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         130 PHETLLVIDATTG--QNGLVQAKIFKEAV----NVTGIILTKLDGTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             CSEEEEEEEGGGH--HHHHHHHHHHHHHS----CCCEEEEECGGGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cceeEEeeccccC--cchhhhhhhhcccc----CCceEEEecccCCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            4678999998754  33444444444332    23467799999632    22345567778899987777  4666654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=86.13  E-value=1.3  Score=29.79  Aligned_cols=68  Identities=13%  Similarity=0.004  Sum_probs=41.1

Q ss_pred             CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 031249           31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  110 (163)
Q Consensus        31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  110 (163)
                      -+-.++|.|++...  +++..........    -+--++.||.|....    .=.+..++...++|+..++  +|++|++
T Consensus       128 p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lIlTKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         128 PHEVMLTIDASTGQ--NAVSQAKLFHEAV----GLTGITLTKLDGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             CSEEEEEEEGGGTH--HHHHHHHHHHHHS----CCCEEEEECCTTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cceeeeehhcccCc--chHHHHhhhhhcc----CCceEEEeecCCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            46889999977542  2333333333322    234678999996331    2344556778899987777  5566644

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=81.44  E-value=4.2  Score=25.92  Aligned_cols=54  Identities=19%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             CChHHHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc
Q 031249           41 TRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS  101 (163)
Q Consensus        41 ~~~~s~~~~~~-~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S  101 (163)
                      +|..++++... ..+.+..   .+.|+|++|.......    ..+++.++++..+++++..-
T Consensus         3 sd~~~l~~~v~~~~~~l~~---AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIAN---RDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHHHc---CCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            56666655433 3344433   4589999999887533    47889999999999977543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=80.31  E-value=3.2  Score=27.76  Aligned_cols=69  Identities=12%  Similarity=0.021  Sum_probs=42.0

Q ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249           30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  109 (163)
Q Consensus        30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  109 (163)
                      ..+-+++|.+++...  +.+......... .  + +--++.||.|...    ..=.+..++...++|+..++  +|++|+
T Consensus       126 ~~~~~~LVl~a~~~~--~~~~~~~~~~~~-~--~-~~~lI~TKlDet~----~~G~~l~~~~~~~lPi~~it--~Gq~v~  193 (211)
T d1j8yf2         126 KPDEVTLVIDASIGQ--KAYDLASKFNQA-S--K-IGTIIITKMDGTA----KGGGALSAVAATGATIKFIG--TGEKID  193 (211)
T ss_dssp             CCSEEEEEEEGGGGG--GHHHHHHHHHHH-C--T-TEEEEEECTTSCS----CHHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             CCceEEEEEecccCc--chHHHHhhhhcc-c--C-cceEEEecccCCC----cccHHHHHHHHHCcCEEEEe--CCCCcc
Confidence            356788999887543  223233333322 2  1 2346799999632    34566677888899977777  466664


Q ss_pred             H
Q 031249          110 E  110 (163)
Q Consensus       110 ~  110 (163)
                      +
T Consensus       194 D  194 (211)
T d1j8yf2         194 E  194 (211)
T ss_dssp             C
T ss_pred             c
Confidence            4