Citrus Sinensis ID: 031270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTEGGLCITPVTIS
Secondary Structure (PSIPRED)
ccHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHccEEEEEEccccccccccccccccccccccccccccccccccEEEEcccccEEcccccccccEEEEEccHHHHHHHHHccccccccccccEEEEEEcccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHcccEEEEEccHEEcHcccccccHHHcccccccccccccEccccEEEEcccccEEcccccccccEEEEEEcHHHHHHHHHccccccccccccEEEEEEcccccccEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MPLLRTALYgkgieiycaptadsrDVWQASMTHIALEGGcfvlsanqfcrrkdyppppeyvfsgieedltpdsvvcaggsviispsgtvlagpnyegealisadldlGEIAREKFAFdvvghysrpevlslvvrdhpatpvtytsasvktegglcitpvtis
Flexible Loop (DISEMBL)
MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPatpvtytsasvktegglcitpvtis
Low Complexity Region (SEG)
MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTEGGLCITPVTIS
Disordered region (IsUnstruct)
***LRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTEGGLCITPV***
Disordered Region (DISOPRED)
MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPAT***********************
Disordered Region (DISEMBL)
MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTEGGLCITPVTIS
Disordered Region (DISPRO)
MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSA*********I******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTEGGLCITPVTIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q42965	349	Bifunctional nitrilase/ni	N/A	no	0.932	0.432	0.880	1e-75
Q42966	348	Bifunctional nitrilase/ni	N/A	no	0.925	0.431	0.880	1e-74
Q6H849	362	Bifunctional nitrilase/ni	yes	no	0.925	0.414	0.853	9e-72
P46011	355	Bifunctional nitrilase/ni	yes	no	0.913	0.416	0.790	3e-66
P32962	339	Nitrilase 2 OS=Arabidopsi	no	no	0.932	0.445	0.655	2e-54
P46010	346	Nitrilase 3 OS=Arabidopsi	no	no	0.932	0.436	0.629	9e-53
P32961	346	Nitrilase 1 OS=Arabidopsi	no	no	0.932	0.436	0.622	1e-51
P40446	119	Putative nitrilase-like p	yes	no	0.623	0.848	0.353	2e-09
Q02068	383	Aliphatic nitrilase OS=Rh	N/A	no	0.685	0.289	0.358	2e-08
Q03217	366	Aliphatic nitrilase OS=Rh	N/A	no	0.617	0.273	0.387	2e-07

>sp|Q42965|NRL4A_TOBAC Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1

 Score =  281 bits (719), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 140/151 (92%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 195 MPLLRTAMYAKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 254

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VFSG EEDLTPDS+VCAGGSVIISPSG VLAGPNY GEALISADLDLGEIAR KF FDVV
Sbjct: 255 VFSGTEEDLTPDSIVCAGGSVIISPSGAVLAGPNYVGEALISADLDLGEIARAKFDFDVV 314

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHY+RPEVLSL+VRDH  +PV++TS S K E
Sbjct: 315 GHYARPEVLSLIVRDHAVSPVSFTSTSSKAE 345

Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification.
Nicotiana tabacum (taxid: 4097)
EC: 3EC: .EC: 5EC: .EC: 5EC: .EC: 4

>sp|Q42966|NRL4B_TOBAC Bifunctional nitrilase/nitrile hydratase NIT4B OS=Nicotiana tabacum GN=NIT4B PE=2 SV=1

 Score =  278 bits (710), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 195 MPLLRTAMYAKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 254

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VFSG E DLTPDS+VCAGGSVIISPSG VLAGPNYEGEALISADLDLGEIAR KF FDVV
Sbjct: 255 VFSGTE-DLTPDSIVCAGGSVIISPSGAVLAGPNYEGEALISADLDLGEIARAKFDFDVV 313

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHY+RPEVLSL+VRDH  +PV++TS S K E
Sbjct: 314 GHYARPEVLSLIVRDHAVSPVSFTSTSSKAE 344

Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification.

Nicotiana tabacum (taxid: 4097)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 4

>sp|Q6H849|NRL4_ORYSJ Bifunctional nitrilase/nitrile hydratase NIT4 OS=Oryza sativa subsp. japonica GN=NIT4 PE=2 SV=1

 Score =  268 bits (686), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 128/150 (85%), Positives = 137/150 (91%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTALYGKGIEIYCAPTADSR VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 201 MPLLRTALYGKGIEIYCAPTADSRQVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 260

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VFSG+ E+ +PD+VVC GGSVIISPSG VLAGPNYEGEALI+ADLDLGEI R KF FDVV
Sbjct: 261 VFSGLGEEPSPDTVVCPGGSVIISPSGEVLAGPNYEGEALITADLDLGEIVRAKFDFDVV 320

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKT 150
           GHY+RPEVLSLVV D P  PV++TSA+ KT
Sbjct: 321 GHYARPEVLSLVVNDQPHLPVSFTSAAEKT 350

Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 4

>sp|P46011|NRL4_ARATH Bifunctional nitrilase/nitrile hydratase NIT4 OS=Arabidopsis thaliana GN=NIT4 PE=1 SV=1

 Score =  250 bits (639), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 128/148 (86%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MP LRTA+Y KGIEIYCAPTADSR+ W ASMTHIALEGGCFVLSANQFCRRKDYP PPEY
Sbjct: 202 MPSLRTAMYAKGIEIYCAPTADSRETWLASMTHIALEGGCFVLSANQFCRRKDYPSPPEY 261

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           +FSG EE LTPDSVVCAGGS IISP G VLAGPNY GEALI+ADLDLG+IAR KF FDVV
Sbjct: 262 MFSGSEESLTPDSVVCAGGSSIISPLGIVLAGPNYRGEALITADLDLGDIARAKFDFDVV 321

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASV 148
           GHYSRPEV SL +R+HP   V++ ++ V
Sbjct: 322 GHYSRPEVFSLNIREHPRKAVSFKTSKV 349

Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN) or allylcyanide and no acitvity with indole-3-acetonitrile. Not associated with auxin production but may be involved in cyanide detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 4

>sp|P32962|NRL2_ARATH Nitrilase 2 OS=Arabidopsis thaliana GN=NIT2 PE=1 SV=1

 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 115/151 (76%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPL RTALY KGIE+YCAPTAD    WQ+SM HIA+EGGCFVLSA QFC RKD+P  P+Y
Sbjct: 184 MPLYRTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCLRKDFPDHPDY 243

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           +F+   +D  PDS+V  GGSVIISP G VLAGPN+E E LI+ADLDLG++AR K  FD V
Sbjct: 244 LFTDWYDDKEPDSIVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDVARAKLYFDSV 303

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYSRP+VL L V +HP  PVT+ S   K E
Sbjct: 304 GHYSRPDVLHLTVNEHPKKPVTFISKVEKAE 334

Can convert indole-3-acetonitrile to the plant hormone indole-3-acetic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P46010|NRL3_ARATH Nitrilase 3 OS=Arabidopsis thaliana GN=NIT3 PE=1 SV=1

 Score =  205 bits (522), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 115/151 (76%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPL RTALY KGIEIYCAPTAD    WQASM HIA+EGGCFVLSA+QFC+R+++P  P+Y
Sbjct: 191 MPLYRTALYAKGIEIYCAPTADYSLEWQASMIHIAVEGGCFVLSAHQFCKRREFPEHPDY 250

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           +F+ I +    D  V  GGSVIISP G VLAGPNYE E L++ADLDLG+IAR K  FDVV
Sbjct: 251 LFNDIVDTKEHDPTVSGGGSVIISPLGKVLAGPNYESEGLVTADLDLGDIARAKLYFDVV 310

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYS+P++ +L V +HP  PVT+ +   K E
Sbjct: 311 GHYSKPDIFNLTVNEHPKKPVTFMTKVEKAE 341

Can convert indole-3-acetonitrile to the plant hormone indole-3-acetic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P32961|NRL1_ARATH Nitrilase 1 OS=Arabidopsis thaliana GN=NIT1 PE=1 SV=2

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/151 (62%), Positives = 113/151 (74%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPL RTALY KGIE+YCAPTAD    WQ+SM HIA+EGGCFVLSA QFC+RK +P  P+Y
Sbjct: 191 MPLYRTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDY 250

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           +F+   +D   DS+V  GGSVIISP G VLAGPN+E E L++AD+DLG+IAR K  FD V
Sbjct: 251 LFTDWYDDKEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDLGDIARAKLYFDSV 310

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYSRP+VL L V +HP   VT+ +   K E
Sbjct: 311 GHYSRPDVLHLTVNEHPRKSVTFVTKVEKAE 341

Can convert indole-3-acetonitrile to the plant hormone indole-3-acetic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P40446|YIQ5_YEAST Putative nitrilase-like protein YIL165C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL165C PE=5 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 31  MTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT----------PDSVVCAGGS 80
           M +IA EG  F++SA QF      P      F  I +  T           D     GGS
Sbjct: 1   MKNIAYEGRLFLISAVQFM-----PDATAMGFGEIIDQATGKRKLPGWPSADDNCINGGS 55

Query: 81  VIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDH 136
           VII P G ++AGP    E L++A+++   IA  +F  D VGHY+R +V  L V + 
Sbjct: 56  VIIDPYGEIIAGPLLGQEGLLTAEINTDLIAEARFDLDPVGHYARGDVFQLTVNER 111

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q02068|NRL1_RHORH Aliphatic nitrilase OS=Rhodococcus rhodochrous PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPN 94
           A+EG  FVL++     +       + +F+G ++       +  G + I  P G  LA P 
Sbjct: 220 AIEGQTFVLASTHVIGK-----ATQDLFAGDDDAKRALLPLGQGWARIYGPDGKSLAEPL 274

Query: 95  YE-GEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKT 150
            E  E L+ A+LDL +I   K A D  GHYSRP+VLSL +     TPV Y +A  +T
Sbjct: 275 PEDAEGLLYAELDLEQIILAKAAADPAGHYSRPDVLSLKIDTRNHTPVQYITADGRT 331

Acts on aliphatic nitriles such as acrylonitrile, crotononitrile and glutaronitrile.

Rhodococcus rhodochrous (taxid: 1829)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 7

>sp|Q03217|NRL2_RHORH Aliphatic nitrilase OS=Rhodococcus rhodochrous GN=nitA PE=1 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 52/111 (46%), Gaps = 11/111 (9%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSV--IISPSGTVLAG 92
           ALEG  FV+   Q       P   E+     E+      ++  GG    II P G  LA 
Sbjct: 215 ALEGQTFVVCTTQVVT----PEAHEFFCDNDEQR----KLIGRGGGFARIIGPDGRDLAT 266

Query: 93  PNYEGE-ALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVT 142
           P  E E  ++ AD+DL  I   K A D VGHYSRP+VLSL       TPV 
Sbjct: 267 PLAEDEEGILYADIDLSAITLAKQAADPVGHYSRPDVLSLNFNQRHTTPVN 317

Rhodococcus rhodochrous (taxid: 1829)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
449443470	350	PREDICTED: bifunctional nitrilase/nitril	0.932	0.431	0.894	1e-75
356539229	350	PREDICTED: bifunctional nitrilase/nitril	0.932	0.431	0.887	3e-75
449532511	302	PREDICTED: bifunctional nitrilase/nitril	0.932	0.5	0.894	5e-75
47606796	349	nitrilase 4A [Lupinus angustifolius] gi|	0.932	0.432	0.880	3e-74
308943808	362	nitrilase [Camellia sinensis]	0.938	0.419	0.888	3e-74
224132310	348	nitrilase 1 [Populus trichocarpa] gi|222	0.932	0.433	0.887	3e-74
74273635	177	nitrilase-like protein NIT [Gossypium hi	0.932	0.853	0.880	4e-74
3914163	349	RecName: Full=Bifunctional nitrilase/nit	0.932	0.432	0.880	6e-74
75766684	350	nitrilase 4B [Lupinus angustifolius] gi|	0.932	0.431	0.874	1e-73
225464870	347	PREDICTED: bifunctional nitrilase/nitril	0.925	0.432	0.887	3e-73

>gi|449443470|ref|XP_004139500.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4A-like [Cucumis sativus]

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/151 (89%), Positives = 141/151 (93%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTADSRD WQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 195 MPLLRTAMYAKGIEIYCAPTADSRDTWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 254

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VFSG EE+LTPDSVVCAGGS IISPSGT+LAGPNY+GEALISADLDLGEIAR KF FDVV
Sbjct: 255 VFSGTEEELTPDSVVCAGGSAIISPSGTILAGPNYDGEALISADLDLGEIARAKFDFDVV 314

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHY+RPEVLSLVVRDHP TPVT+TS S K E
Sbjct: 315 GHYARPEVLSLVVRDHPTTPVTFTSTSTKVE 345

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539229|ref|XP_003538102.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4A-like [Glycine max]

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 141/151 (93%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KG+EIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 196 MPLLRTAMYAKGVEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 255

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VF+G EEDLTPDSVVCAGGSVIISPSG VLAGPNY+GEALISADLDLGEIAR KF FDVV
Sbjct: 256 VFAGTEEDLTPDSVVCAGGSVIISPSGAVLAGPNYDGEALISADLDLGEIARAKFDFDVV 315

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYSRPEVLSL+V+DHP  PVT+TS S K E
Sbjct: 316 GHYSRPEVLSLIVKDHPTNPVTFTSTSTKIE 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532511|ref|XP_004173224.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4A-like, partial [Cucumis sativus]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 135/151 (89%), Positives = 141/151 (93%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTADSRD WQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 147 MPLLRTAMYAKGIEIYCAPTADSRDTWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 206

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VFSG EE+LTPDSVVCAGGS IISPSGT+LAGPNY+GEALISADLDLGEIAR KF FDVV
Sbjct: 207 VFSGTEEELTPDSVVCAGGSAIISPSGTILAGPNYDGEALISADLDLGEIARAKFDFDVV 266

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHY+RPEVLSLVVRDHP TPVT+TS S K E
Sbjct: 267 GHYARPEVLSLVVRDHPTTPVTFTSTSTKVE 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47606796|gb|AAT36331.1| nitrilase 4A [Lupinus angustifolius] gi|79082433|gb|ABB51979.1| nitrilase 4A [Lupinus angustifolius]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 141/151 (93%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KG+EIYCAPTADSR+VWQASMTHIALEGGCFVLSANQFCRR+DYPPPPEY
Sbjct: 195 MPLLRTAMYAKGVEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRRDYPPPPEY 254

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VF G EE+LTPDSVVCAGGSVIISPSG VLAGP+YEGEALISADLDLGEIAR KF FDVV
Sbjct: 255 VFEGTEENLTPDSVVCAGGSVIISPSGAVLAGPSYEGEALISADLDLGEIARAKFDFDVV 314

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYSRPEVLSLVV+DHP  PVT+TSAS K E
Sbjct: 315 GHYSRPEVLSLVVKDHPTNPVTFTSASTKIE 345

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308943808|gb|ADO51750.1| nitrilase [Camellia sinensis]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/152 (88%), Positives = 140/152 (92%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTAD+RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPP+Y
Sbjct: 208 MPLLRTAMYAKGIEIYCAPTADARDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPDY 267

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VF GIEED TPDSVVCAG SVIISPSGTVLAGPNY+GEALISADLDLGEIAR KF FDVV
Sbjct: 268 VFHGIEEDPTPDSVVCAGSSVIISPSGTVLAGPNYDGEALISADLDLGEIARAKFGFDVV 327

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTEG 152
           GHYSR EV SL VRDHP  PVT+TSAS KTEG
Sbjct: 328 GHYSRSEVFSLTVRDHPTDPVTFTSASGKTEG 359

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132310|ref|XP_002328237.1| nitrilase 1 [Populus trichocarpa] gi|222837752|gb|EEE76117.1| nitrilase 1 [Populus trichocarpa]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 139/151 (92%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+YGKGIEIYCAPTADSRD WQA+MTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 194 MPLLRTAMYGKGIEIYCAPTADSRDTWQATMTHIALEGGCFVLSANQFCRRKDYPPPPEY 253

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VF G+EEDLTPDSVVCAGGSVIISP GTVLAGPNY+GEALISADLDLGEIAR KF FDVV
Sbjct: 254 VFLGVEEDLTPDSVVCAGGSVIISPLGTVLAGPNYDGEALISADLDLGEIARAKFDFDVV 313

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYSRPEVLSL VRDHP   V +TS S KTE
Sbjct: 314 GHYSRPEVLSLTVRDHPTNAVMFTSESAKTE 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|74273635|gb|ABA01485.1| nitrilase-like protein NIT [Gossypium hirsutum]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 142/151 (94%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTADSRDVWQASMTHIALEGGC VLSANQFCRRKDYPPPPEY
Sbjct: 21  MPLLRTAMYAKGIEIYCAPTADSRDVWQASMTHIALEGGCNVLSANQFCRRKDYPPPPEY 80

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           +FSG E++L PDSVVCAGGSVIISPSG +LAGPNY+GEALISADLD+GEIAR KF FDVV
Sbjct: 81  LFSGTEDELNPDSVVCAGGSVIISPSGAILAGPNYDGEALISADLDMGEIARAKFDFDVV 140

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYSRPEVLSL+VRDHPA PVT+TSAS KTE
Sbjct: 141 GHYSRPEVLSLIVRDHPAKPVTFTSASEKTE 171

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3914163|sp|Q42965.1|NRL4A_TOBAC RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4A; Short=TNIT4A; AltName: Full=Cyanoalanine nitrilase A; AltName: Full=Nitrilase 4A gi|1171482|dbj|BAA09645.1| nitrilase [Nicotiana tabacum]

 Score =  281 bits (719), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 140/151 (92%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 195 MPLLRTAMYAKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 254

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VFSG EEDLTPDS+VCAGGSVIISPSG VLAGPNY GEALISADLDLGEIAR KF FDVV
Sbjct: 255 VFSGTEEDLTPDSIVCAGGSVIISPSGAVLAGPNYVGEALISADLDLGEIARAKFDFDVV 314

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHY+RPEVLSL+VRDH  +PV++TS S K E
Sbjct: 315 GHYARPEVLSLIVRDHAVSPVSFTSTSSKAE 345

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75766684|gb|ABA28312.1| nitrilase 4B [Lupinus angustifolius] gi|79082461|gb|ABB51980.1| nitrilase 4B [Lupinus angustifolius]

 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/151 (87%), Positives = 138/151 (91%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KG+EIYCAPTADSRD+WQAS THIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 196 MPLLRTAMYAKGVEIYCAPTADSRDLWQASTTHIALEGGCFVLSANQFCRRKDYPPPPEY 255

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           VFSG EEDLTPDSVV AGGSVIISPSG VLAGPNYEGEALISADLDLGEIAR KF FDVV
Sbjct: 256 VFSGTEEDLTPDSVVSAGGSVIISPSGAVLAGPNYEGEALISADLDLGEIARAKFDFDVV 315

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYSR EVLSL+V+DHP  PVT+TS S K E
Sbjct: 316 GHYSRSEVLSLIVKDHPTNPVTFTSTSTKIE 346

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464870|ref|XP_002272837.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Vitis vinifera]

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 143/151 (94%), Gaps = 1/151 (0%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTAD+RD+WQ+SMTHIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 194 MPLLRTAMYAKGIEIYCAPTADARDIWQSSMTHIALEGGCFVLSANQFCRRKDYPPPPEY 253

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
            FSG  +DLTPDSVVCAGGSVIISPSGTVLAGPNY+GEALISADLDLGEIAR KF FDVV
Sbjct: 254 EFSG-ADDLTPDSVVCAGGSVIISPSGTVLAGPNYDGEALISADLDLGEIARAKFDFDVV 312

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
           GHYSRPEVLSLVV+D+P  PVT+TSASVKTE
Sbjct: 313 GHYSRPEVLSLVVKDNPTKPVTFTSASVKTE 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2176377	355	NIT4 "nitrilase 4" [Arabidopsi	0.913	0.416	0.790	5.5e-61
TAIR|locus:2095735	339	NIT2 "nitrilase 2" [Arabidopsi	0.932	0.445	0.655	1.7e-50
TAIR|locus:2095700	346	NIT3 "nitrilase 3" [Arabidopsi	0.932	0.436	0.629	6.7e-49
TAIR|locus:2095690	346	NIT1 "nitrilase 1" [Arabidopsi	0.932	0.436	0.622	7.7e-48
UNIPROTKB|Q4KCL8	306	PFL_2909 "Nitrilase family pro	0.839	0.444	0.482	3.4e-29
WB|WBGene00014206	305	nit-1 [Caenorhabditis elegans	0.839	0.445	0.446	1.9e-26
UNIPROTKB|G4N9H1	344	MGG_03280 "Nitrilase 2" [Magna	0.839	0.395	0.395	3.5e-20
ASPGD|ASPL0000068634	347	AN7367 [Emericella nidulans (t	0.864	0.403	0.380	5.7e-19
SGD|S000001427	119	YIL165C "Putative protein of u	0.648	0.882	0.354	6.6e-10
TIGR_CMR|SPO_A0114	344	SPO_A0114 "nitrilase family pr	0.851	0.401	0.283	4.9e-06

TAIR|locus:2176377 NIT4 "nitrilase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 117/148 (79%), Positives = 128/148 (86%)

Query:     1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             MP LRTA+Y KGIEIYCAPTADSR+ W ASMTHIALEGGCFVLSANQFCRRKDYP PPEY
Sbjct:   202 MPSLRTAMYAKGIEIYCAPTADSRETWLASMTHIALEGGCFVLSANQFCRRKDYPSPPEY 261

Query:    61 VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
             +FSG EE LTPDSVVCAGGS IISP G VLAGPNY GEALI+ADLDLG+IAR KF FDVV
Sbjct:   262 MFSGSEESLTPDSVVCAGGSSIISPLGIVLAGPNYRGEALITADLDLGDIARAKFDFDVV 321

Query:   121 GHYSRPEVLSLVVRDHPATPVTYTSASV 148
             GHYSRPEV SL +R+HP   V++ ++ V
Sbjct:   322 GHYSRPEVFSLNIREHPRKAVSFKTSKV 349

GO:0005886 "plasma membrane" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000257 "nitrilase activity" evidence=IDA

GO:0018822 "nitrile hydratase activity" evidence=IDA

GO:0019499 "cyanide metabolic process" evidence=IEP

GO:0047427 "cyanoalanine nitrilase activity" evidence=IDA

GO:0047558 "3-cyanoalanine hydratase activity" evidence=IDA

GO:0051410 "detoxification of nitrogen compound" evidence=IEP

GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA

TAIR|locus:2095735 NIT2 "nitrilase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 99/151 (65%), Positives = 115/151 (76%)

Query:     1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             MPL RTALY KGIE+YCAPTAD    WQ+SM HIA+EGGCFVLSA QFC RKD+P  P+Y
Sbjct:   184 MPLYRTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCLRKDFPDHPDY 243

Query:    61 VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
             +F+   +D  PDS+V  GGSVIISP G VLAGPN+E E LI+ADLDLG++AR K  FD V
Sbjct:   244 LFTDWYDDKEPDSIVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDVARAKLYFDSV 303

Query:   121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
             GHYSRP+VL L V +HP  PVT+ S   K E
Sbjct:   304 GHYSRPDVLHLTVNEHPKKPVTFISKVEKAE 334

GO:0005886 "plasma membrane" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0009617 "response to bacterium" evidence=IEP

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000257 "nitrilase activity" evidence=IDA

GO:0080109 "indole-3-acetonitrile nitrile hydratase activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=TAS

TAIR|locus:2095700 NIT3 "nitrilase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/151 (62%), Positives = 115/151 (76%)

Query:     1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             MPL RTALY KGIEIYCAPTAD    WQASM HIA+EGGCFVLSA+QFC+R+++P  P+Y
Sbjct:   191 MPLYRTALYAKGIEIYCAPTADYSLEWQASMIHIAVEGGCFVLSAHQFCKRREFPEHPDY 250

Query:    61 VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
             +F+ I +    D  V  GGSVIISP G VLAGPNYE E L++ADLDLG+IAR K  FDVV
Sbjct:   251 LFNDIVDTKEHDPTVSGGGSVIISPLGKVLAGPNYESEGLVTADLDLGDIARAKLYFDVV 310

Query:   121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
             GHYS+P++ +L V +HP  PVT+ +   K E
Sbjct:   311 GHYSKPDIFNLTVNEHPKKPVTFMTKVEKAE 341

GO:0005886 "plasma membrane" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000257 "nitrilase activity" evidence=IDA

GO:0019762 "glucosinolate catabolic process" evidence=TAS

GO:0009970 "cellular response to sulfate starvation" evidence=IEP

GO:0080109 "indole-3-acetonitrile nitrile hydratase activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA

TAIR|locus:2095690 NIT1 "nitrilase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 94/151 (62%), Positives = 113/151 (74%)

Query:     1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             MPL RTALY KGIE+YCAPTAD    WQ+SM HIA+EGGCFVLSA QFC+RK +P  P+Y
Sbjct:   191 MPLYRTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDY 250

Query:    61 VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
             +F+   +D   DS+V  GGSVIISP G VLAGPN+E E L++AD+DLG+IAR K  FD V
Sbjct:   251 LFTDWYDDKEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDLGDIARAKLYFDSV 310

Query:   121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTE 151
             GHYSRP+VL L V +HP   VT+ +   K E
Sbjct:   311 GHYSRPDVLHLTVNEHPRKSVTFVTKVEKAE 341

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000257 "nitrilase activity" evidence=IDA

GO:0080109 "indole-3-acetonitrile nitrile hydratase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=TAS

UNIPROTKB|Q4KCL8 PFL_2909 "Nitrilase family protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 70/145 (48%), Positives = 92/145 (63%)

Query:     1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             MPLLRTA+Y +GIE++CAPT D R++WQ SM HIA EG CFV+SA   C+ +     PE 
Sbjct:   170 MPLLRTAMYAQGIEVWCAPTVDEREMWQVSMRHIAHEGRCFVVSA---CQVQ---ASPEE 223

Query:    61 VFSGIEEDLTP-DSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDV 119
             +  G+E    P    + AGGSVI+ P G VLAGP      LISA +D  ++ R ++ +DV
Sbjct:   224 L--GLEIANWPAQRPLIAGGSVIVGPMGDVLAGPLVGRAGLISAQIDTADLVRARYDYDV 281

Query:   120 VGHYSRPEVLSLVVRDHPATPVTYT 144
             VGHY+RP+V  L V   P   V +T
Sbjct:   282 VGHYARPDVFELTVDQRPRPGVRFT 306

GO:0000257 "nitrilase activity" evidence=ISS

GO:0009683 "indoleacetic acid metabolic process" evidence=ISS

WB|WBGene00014206 nit-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 63/141 (44%), Positives = 84/141 (59%)

Query:     1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             MPL R  LY K I+IY APT D RDVW ++M  IALEG CFV+SA QF +  DYP     
Sbjct:   167 MPLYRMTLYSKEIQIYLAPTVDDRDVWLSTMRTIALEGRCFVVSACQFLKSSDYP----- 221

Query:    61 VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
             +   + ++   D V+  GGS  + P GTVL  P++  E +   + DL ++A  K   DVV
Sbjct:   222 LDHPLRKEHGEDKVLIRGGSCAVDPLGTVLVEPDFTKETIRYTEFDLSDLALGKMDLDVV 281

Query:   121 GHYSRPEVLSLVVRDHPATPV 141
             GHYSRP+V  L V ++  + V
Sbjct:   282 GHYSRPDVFQLKVNENSQSTV 302

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|G4N9H1 MGG_03280 "Nitrilase 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 57/144 (39%), Positives = 74/144 (51%)

Query:     1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             MP+LR +LY + I +Y APTAD RD W + M  I  EG CFV+S+N  C     PP    
Sbjct:   208 MPMLRQSLYQQNINLYLAPTADGRDTWLSLMRTIGCEGRCFVVSSNM-C----VPPKGSN 262

Query:    61 VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEG-EALISADLDLGEIAREKFAFDV 119
                G  E  T +  V  GGS I  P G VLAGP +E  + +I AD+D  +  R +   D 
Sbjct:   263 TTGG--EASTTEPFVSRGGSCITGPMGAVLAGPQWENNQDIIYADVDFEDCIRGRLDLDA 320

Query:   120 VGHYSRPEVLSLVVRDHPATPVTY 143
              G YSR +     V     +P+ Y
Sbjct:   321 AGSYSRNDSFKFSVEGLDMSPLPY 344

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000068634 AN7367 [Emericella nidulans (taxid:162425)]

 Score = 228 (85.3 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 56/147 (38%), Positives = 76/147 (51%)

Query:     1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             MPLLR +LY + + +Y APT DSR+ W   M  IALEG   VLSA+Q  R K+ P     
Sbjct:   198 MPLLRQSLYSQNVNLYLAPTVDSRETWLPLMRTIALEGRTVVLSASQSGRHKELPSWVTQ 257

Query:    61 VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGP----NYEGE---ALISADLDLGEIARE 113
                G + D  P+     GGS I+ P G +LAGP    N + +   AL   ++D  +  R 
Sbjct:   258 APEGEKIDADPEEWTSGGGSCIVGPLGEILAGPIWNVNDDSDPDTALQIVEVDFDDCVRG 317

Query:   114 KFAFDVVGHYSRPEVLSLVVRDHPATP 140
             +   DV G YSR +  +L V     +P
Sbjct:   318 RLDLDVAGSYSRNDSFTLKVEGLDLSP 344

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

SGD|S000001427 YIL165C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 39/110 (35%), Positives = 55/110 (50%)

Query:    31 MTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTP-----DSVVCAGGSVIISP 85
             M +IA EG  F++SA QF          E +     +   P     D     GGSVII P
Sbjct:     1 MKNIAYEGRLFLISAVQFMPDATAMGFGEIIDQATGKRKLPGWPSADDNCINGGSVIIDP 60

Query:    86 SGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD 135
              G ++AGP    E L++A+++   IA  +F  D VGHY+R +V  L V +
Sbjct:    61 YGEIIAGPLLGQEGLLTAEINTDLIAEARFDLDPVGHYARGDVFQLTVNE 110

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0000422 "mitochondrion degradation" evidence=IMP

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

TIGR_CMR|SPO_A0114 SPO_A0114 "nitrilase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 117 (46.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 42/148 (28%), Positives = 68/148 (45%)

Query:     3 LLRTALYGKGIEIYCAPTA-DSRDVWQA-SMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
             L+ TA Y   I +  AP   D  +  +  SM+H + EG  F ++A      ++     E 
Sbjct:   187 LVHTASY---ISLPVAPPDYDMAEAIKLRSMSH-SFEGKVFTVTATSTVS-EEIIEAMEQ 241

Query:    61 VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
             V     E L   S   +G   +I P G  +     + E ++ A++DLG+  + K   D+ 
Sbjct:   242 VRPNARELLQRKSSAYSG---VIGPDGREVVTGLIDDEGIVYAEIDLGKCIQPKQMHDIT 298

Query:   121 GHYSRPEVLSLVVRDHPATPVTYTSASV 148
             GHY+R ++  L V     TPV  + A+V
Sbjct:   299 GHYNRFDIFDLRVNQRRQTPVALSGAAV 326


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      162       162   0.00079  107 3  11 22  0.39    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  152 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.60u 0.10s 15.70t   Elapsed:  00:00:01
  Total cpu time:  15.60u 0.10s 15.70t   Elapsed:  00:00:01
  Start:  Mon May 20 21:19:32 2013   End:  Mon May 20 21:19:33 2013

GO:0008152 "metabolic process" evidence=ISS

GO:0016815 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6H849	NRL4_ORYSJ	3, ., 5, ., 5, ., 4	0.8533	0.9259	0.4143	yes	no
P46011	NRL4_ARATH	3, ., 5, ., 5, ., 4	0.7905	0.9135	0.4169	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
PLN02504	346	PLN02504, PLN02504, nitrilase	1e-110
cd07564	297	cd07564, nitrilases_CHs, Nitrilases, cyanide hydra	1e-57
TIGR04048	301	TIGR04048, nitrile_sll0784, putative nitrilase, sl	2e-24
COG0388	274	COG0388, COG0388, Predicted amidohydrolase [Genera	1e-10
cd07197	253	cd07197, nitrilase, Nitrilase superfamily, includi	7e-10
cd07573	284	cd07573, CPA, N-carbamoylputrescine amidohydrolase	3e-07
cd07586	269	cd07586, nitrilase_8, Uncharacterized subgroup of	5e-07
cd07584	258	cd07584, nitrilase_6, Uncharacterized subgroup of	6e-07
cd07583	253	cd07583, nitrilase_5, Uncharacterized subgroup of	7e-06
cd07572	265	cd07572, nit, Nit1, Nit 2, and related proteins, a	2e-05
cd07585	261	cd07585, nitrilase_7, Uncharacterized subgroup of	6e-05
TIGR03381	279	TIGR03381, agmatine_aguB, N-carbamoylputrescine am	2e-04
cd07576	254	cd07576, R-amidase_like, Pseudomonas sp	2e-04
PLN02747	296	PLN02747, PLN02747, N-carbamolyputrescine amidase	3e-04
cd07569	302	cd07569, DCase, N-carbamyl-D-amino acid amidohydro	3e-04
cd07581	255	cd07581, nitrilase_3, Uncharacterized subgroup of	0.001

>gnl|CDD|178120 PLN02504, PLN02504, nitrilase

 Score =  317 bits (815), Expect = e-110
 Identities = 128/154 (83%), Positives = 137/154 (88%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
           MPLLRTA+Y KGIEIYCAPTADSR+ WQASM HIALEGGCFVLSANQFCRRKDYPPPPEY
Sbjct: 191 MPLLRTAMYAKGIEIYCAPTADSRETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEY 250

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
           +FSG EEDLTPDS+VCAGGSVIISPSGTVLAGPNYEGE LI+ADLDLGEIAR KF FDVV
Sbjct: 251 LFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVV 310

Query: 121 GHYSRPEVLSLVVRDHPATPVTYTSASVKTEGGL 154
           GHYSRP+VLSL V +HP  PVT+TS+  K E   
Sbjct: 311 GHYSRPDVLSLTVNEHPLKPVTFTSSPEKAEDDS 344

Length = 346

>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

 Score =  181 bits (461), Expect = 1e-57
 Identities = 65/141 (46%), Positives = 81/141 (57%), Gaps = 11/141 (7%)

Query: 1   MPLLRTALYGKGIEIYCAPTAD------SRDVWQASMTHIALEGGCFVLSANQFCRRKDY 54
           MPL R ALY +G +I+ AP  D      SR+ W A+  H ALEG CFVLSA Q    +D 
Sbjct: 162 MPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDI 221

Query: 55  PPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREK 114
           P   E      +E+  P  V+  GGS I+ P G VLAGP  + E ++ AD+DL +I   K
Sbjct: 222 PADCED-----DEEADPLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAK 276

Query: 115 FAFDVVGHYSRPEVLSLVVRD 135
             FD VGHYSRP+V SL V  
Sbjct: 277 LDFDPVGHYSRPDVFSLTVDR 297

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1. Length = 297

>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family

 Score = 96.0 bits (239), Expect = 2e-24
 Identities = 57/149 (38%), Positives = 74/149 (49%), Gaps = 23/149 (15%)

Query: 2   PLLRTALYGKGIEIYCAPTADS------RDVWQASMTHIALEGGCFVLSANQFCRRKDYP 55
           PL R AL  +  EI+CA    S       D  + ++ H ALE GCFV++A  +   +   
Sbjct: 165 PLARYALMAQHEEIHCAQFPGSLVGPIFADQMEVTIRHHALESGCFVVNATGWLTPEQI- 223

Query: 56  PPPEYVFSGIEEDLTPDSV---VCAGG--SVIISPSGTVLAGPNYEGEALISADLDLGEI 110
                        +TPD       +GG  + IISP G  LAGP  EGE +  ADLD   I
Sbjct: 224 -----------AQITPDEGLHKALSGGCHTAIISPEGKHLAGPLTEGEGMAIADLDFSLI 272

Query: 111 AREKFAFDVVGHYSRPEVLSLVVRDHPAT 139
            + K   D VGHYSRPE+LSL++   PA 
Sbjct: 273 TKRKRMMDSVGHYSRPELLSLLIDRRPAR 301

This family represents a subfamily of a C-N bond-cleaving hydrolases (see pfam00795). Members occur as part of a cluster of genes in a probable biosynthetic cluster that contains a radical SAM protein, an N-acetyltransferase, a flavoprotein, several proteins of unknown function, and usually a glycosyltransferase. Members are closely related to a characterized aliphatic nitrilase from Rhodopseudomonas rhodochrous J1, for which an active site Cys was found at position 165 [Unknown function, Enzymes of unknown specificity]. Length = 301

>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only]

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 23/137 (16%)

Query: 3   LLRTALYGKGIEIYCAPTADSR----DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPP 58
           L R  L   G E+   P A       D W+  +   A+E   +VL+AN+           
Sbjct: 157 LARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRA---------- 206

Query: 59  EYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFD 118
                          +   G S II P G VLA    E E ++ AD+DL E+A  +    
Sbjct: 207 ---------GFDGAGLEFCGHSAIIDPDGEVLAEAGEEEEGVLLADIDLAELAEVRRKIP 257

Query: 119 VVGHYSRPEVLSLVVRD 135
           V+    R ++   ++R 
Sbjct: 258 VLKDRRRFDLDVELLRS 274

Length = 274

>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 24/109 (22%)

Query: 7   ALYGKGIEIYCAPTA---DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFS 63
            L  KG +I   P A     R+ W+  +   A+E G +V++AN+                
Sbjct: 154 ELALKGADIILVPAAWPTARREHWELLLRARAIENGVYVVAANR---------------V 198

Query: 64  GIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAR 112
           G E  L       AGGS+I+ P G VLA  + E E ++ A+LDL E+  
Sbjct: 199 GEEGGL-----EFAGGSMIVDPDGEVLAEAS-EEEGILVAELDLDELRE 241

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy. Length = 253

>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 30/124 (24%)

Query: 6   TALYGKGIEIYCAPTA------------DSRDVWQASMTHIALEGGCFVLSANQFCRRKD 53
            AL  +G EI   PTA            D RD WQ      A+  G  V + N+      
Sbjct: 163 MAL--QGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRV----- 215

Query: 54  YPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIARE 113
                     G+E D     +   G S I  P G +LA  + + E ++ A+ DL EI   
Sbjct: 216 ----------GVEGDPGSG-ITFYGSSFIADPFGEILAQASRDEEEILVAEFDLDEIEEV 264

Query: 114 KFAF 117
           + A+
Sbjct: 265 RRAW 268

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer. Length = 284

>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 22/95 (23%)

Query: 22  DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSV 81
           D+ + W+  +   A+  G +V+ AN+                G+E+ +        GGS 
Sbjct: 179 DNEENWETLLKFYAMMNGVYVVFANRV---------------GVEDGVY-----FWGGSR 218

Query: 82  IISPSGTVLA-GPNYEGEALISADLDLGEIAREKF 115
           ++ P G V+A  P +E E L+ A+LD   I R +F
Sbjct: 219 VVDPDGEVVAEAPLFE-EDLLVAELDRSAIRRARF 252

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 269

>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 23/104 (22%)

Query: 11  KGIEIYCAPTA---DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE 67
           KG E+   P+A      D+W  ++   ALE   FV + N+                G E 
Sbjct: 161 KGAEVIFCPSAWREQDADIWDINLPARALENTVFVAAVNRV---------------GNEG 205

Query: 68  DLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIA 111
           DL     V  G S I++P G VLA  + E E ++ A++DL  IA
Sbjct: 206 DL-----VLFGKSKILNPRGQVLAEASEEAEEILYAEIDLDAIA 244

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 23/83 (27%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPN 94
           A+E   FV++ N+                G +           G S++I P G VLA   
Sbjct: 185 AIENQAFVVACNR---------------VGTDGGNE-----FGGHSMVIDPWGEVLAEAG 224

Query: 95  YEGEALISADLDLGEIA--REKF 115
            E E +++A++DL E+A  R+K 
Sbjct: 225 -EEEEILTAEIDLEEVAEVRKKI 246

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 253

>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 22/79 (27%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLA-GP 93
           A+E  C+V++A Q     +                        G S+I+ P G VLA   
Sbjct: 196 AIENQCYVVAAAQ-AGDHE------------------AGRETYGHSMIVDPWGEVLAEAG 236

Query: 94  NYEGEALISADLDLGEIAR 112
             EGE ++ A++DL  +  
Sbjct: 237 --EGEGVVVAEIDLDRLEE 253

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265

>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 29/109 (26%)

Query: 6   TALYGKGIEI-------YCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPP 58
           TAL   G EI           +   R+ W   +   A + G FV + N            
Sbjct: 152 TAL--LGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACN------------ 197

Query: 59  EYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDL 107
                G+  D      V  GG++I+ P G VLA     G+ ++ ADLDL
Sbjct: 198 -----GVGRD---GGEVFPGGAMILDPYGRVLAETTSGGDGMVVADLDL 238

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 261

>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 26/117 (22%)

Query: 11  KGIEIYCAPTA----------DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
            G E+   PTA          DSRD WQ  M   A      V++AN+             
Sbjct: 165 MGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRI------------ 212

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAF 117
              G E           G S I   +G ++A      EA++ A  DL EIA+++ A+
Sbjct: 213 ---GTEIG-DGGEQTFYGSSFIADHTGELVAEAGRSEEAVLVATFDLDEIAKQRAAW 265

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one [Central intermediary metabolism, Polyamine biosynthesis]. Length = 279

>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 28/78 (35%), Positives = 31/78 (39%), Gaps = 21/78 (26%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPN 94
           A E   FV  AN                 G E+ LT       G S I  P GTVLA   
Sbjct: 184 AFENQIFVAYAN---------------RCGAEDGLT-----YVGLSSIAGPDGTVLARAG 223

Query: 95  YEGEALISADLDLGEIAR 112
             GEAL+ ADLD   +A 
Sbjct: 224 -RGEALLVADLDPAALAA 240

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer. Length = 254

>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 22/123 (17%)

Query: 7   ALYGKGIEIYCAPTA----------DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPP 56
           A+  +G E+   PTA          DSRD W+  M   A      ++++N+         
Sbjct: 167 AMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEI---- 222

Query: 57  PPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA 116
                   +E +  P  +   GGS I  P+G ++A  + + EA++ A+ DL +I  ++ +
Sbjct: 223 --------LETEHGPSKITFYGGSFIAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRAS 274

Query: 117 FDV 119
           + V
Sbjct: 275 WGV 277

Length = 296

>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 78  GGSVIISPSGTVLAGPNYEGEALISA--DLDLGEIAREK-FAFDV---VGHYSR 125
           GGS I++P+G ++A      + +I A  DLDL    RE  F F       HY  
Sbjct: 246 GGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEHYGL 299

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers. Length = 302

>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 29/80 (36%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLA--G 92
           ALE   +V +A Q          P  +                G S+++ P G VLA  G
Sbjct: 191 ALENTVYVAAAGQ--------AGPRGI----------------GRSMVVDPLGVVLADLG 226

Query: 93  PNYEGEALISADLDLGEIAR 112
              E E L+ AD+D   +  
Sbjct: 227 ---EREGLLVADIDPERVEE 243

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PLN02504	346	nitrilase	99.97
KOG0805	337	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.97
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.93
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	99.93
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	99.92
PLN00202	405	beta-ureidopropionase	99.92
PRK10438	256	C-N hydrolase family amidase; Provisional	99.89
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	99.89
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	99.88
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	99.88
PRK13286	345	amiE acylamide amidohydrolase; Provisional	99.88
PLN02747	296	N-carbamolyputrescine amidase	99.87
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	99.87
cd07569	302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	99.87
PLN02798	286	nitrilase	99.86
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	99.86
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	99.85
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	99.85
PRK13287	333	amiF formamidase; Provisional	99.85
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	99.85
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	99.84
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	99.84
COG0388	274	Predicted amidohydrolase [General function predict	99.84
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	99.83
cd07574	280	nitrilase_Rim1_like Uncharacterized subgroup of th	99.83
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	99.82
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	99.82
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	99.81
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	99.79
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	99.79
cd07575	252	Xc-1258_like Xanthomonas campestris XC1258 and rel	99.77
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	99.77
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	99.73
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	99.69
PRK13981	540	NAD synthetase; Provisional	99.6
KOG0806	298	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.57
KOG0808	387	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.53
cd07571	270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	99.48
PRK02628	679	nadE NAD synthetase; Reviewed	99.43
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	99.37
cd07566	295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	99.26
PRK00302	505	lnt apolipoprotein N-acyltransferase; Reviewed	99.18
TIGR00546	391	lnt apolipoprotein N-acyltransferase. This enzyme	98.71
COG0815	518	Lnt Apolipoprotein N-acyltransferase [Cell envelop	98.34
PRK12291	418	apolipoprotein N-acyltransferase; Reviewed	97.27
KOG2303	706	consensus Predicted NAD synthase, contains CN hydr	96.58
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	81.2
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	81.04
PF00795	186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	80.42
PLN02798	286	nitrilase	80.4
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	80.33
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	80.2

>PLN02504 nitrilase

Probab=99.97  E-value=3.7e-31  Score=221.16  Aligned_cols=152  Identities=84%  Similarity=1.400  Sum_probs=127.0

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270            1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS   80 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S   80 (162)
                      .||++|.|+++||+||++|++++..+|+.++++||+||+||||+||++|.++.++...+....+.+.....+.+.|.|+|
T Consensus       191 fPe~~r~la~~Gadii~~p~~~~~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S  270 (346)
T PLN02504        191 MPLLRTAMYAKGIEIYCAPTADSRETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGS  270 (346)
T ss_pred             hHHHHHHHHHCCCeEEEECCCCCchhHHHHHHHHHHccCcEEEEecccccccccCcccccccccccccccccccccCcce
Confidence            48999999999999999999998899999999999999999999999986543322110000011111112446789999


Q ss_pred             EEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCcCCCceEEcCCCccccC
Q 031270           81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTEG  152 (162)
Q Consensus        81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~~~~~~~~~~~~~~~~~  152 (162)
                      +|++|+|++|+++...+|++++||||++.+.+.|..+|+++||+|||+|+++++.++++|+.+.++.+|.|.
T Consensus       271 ~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~~~~~~~~~~~~~~~~~~  342 (346)
T PLN02504        271 VIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNEHPLKPVTFTSSPEKAED  342 (346)
T ss_pred             EEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcCCCCCceeeccccccccc
Confidence            999999999998865679999999999999999999999999999999999999999999999999998774

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.97  E-value=7.8e-31  Score=206.62  Aligned_cols=151  Identities=68%  Similarity=1.170  Sum_probs=139.1

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270            1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS   80 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S   80 (162)
                      ||+.+.+|..+|.||+++|++...+.|+..++..|+|.+|||+++|+.....++|+-+..+.....+....|.....|+|
T Consensus       184 MPl~R~alY~KgieIycAPT~D~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~~~~~k~pD~vv~~GGS  263 (337)
T KOG0805|consen  184 MPLYRTALYAKGIEIYCAPTADGRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTDWYDDKEPDSVVSQGGS  263 (337)
T ss_pred             cHHHHHHHHhcCcEEEeccCCCCcHHHHHhhhheeecCceEEEEhhhhcccccCCCCchhhcccchhccCCCcceecCCc
Confidence            89999999999999999999999999999999999999999999999999888887666666666666677888899999


Q ss_pred             EEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCcCCCceEEcCCCcccc
Q 031270           81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPATPVTYTSASVKTE  151 (162)
Q Consensus        81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~~~~~~~~~~~~~~~~  151 (162)
                      .|++|.|++|+.+...+|+|++||+|+++|.++|..+|+.|||+|||+|+|.++.+++.++.+...-.|.|
T Consensus       264 viI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtVnE~~~~~v~~kt~~~~~~  334 (337)
T KOG0805|consen  264 VIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTVNEHPRKPVTFKTKVEKAE  334 (337)
T ss_pred             EEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEeccCCCCceEEeeeeeecc
Confidence            99999999999999899999999999999999999999999999999999999999999998876655544

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.93  E-value=2.6e-26  Score=180.25  Aligned_cols=111  Identities=29%  Similarity=0.450  Sum_probs=101.1

Q ss_pred             cHHHHHHHhCCCcEEEEeCCC----ChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            2 PLLRTALYGKGIEIYCAPTAD----SRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         2 P~~~r~la~~Gaei~v~p~a~----~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      ||..-.|..+||+|+..|+++    +..||+.++||||+|+|||||++.++|...                   .....+
T Consensus       176 pE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ~G~Hn-------------------eKR~Sy  236 (295)
T KOG0807|consen  176 PELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQVGKHN-------------------EKRESY  236 (295)
T ss_pred             chHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhhccccc-------------------chhhcc
Confidence            889999999999999999998    578999999999999999999999999852                   345678


Q ss_pred             ceeEEECCCCceeecCCC-CCccEEEEEechHHHHHHHhhCCcCCCCCCccceeee
Q 031270           78 GGSVIISPSGTVLAGPNY-EGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLV  132 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~-~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~  132 (162)
                      |+||||||||.+++..+. ...++++||||++.+...|.++|++.| ||+|+|.+.
T Consensus       237 GhSMiVDPWGtVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~h-Rr~dly~~~  291 (295)
T KOG0807|consen  237 GHSMIVDPWGTVVARCSERTGPGLILADIDLSLLDSLRTKMPLFNH-RRNDLYTLF  291 (295)
T ss_pred             CcceEEcchhhhheecCCCCCCceEEEEccHHHHHHHHHhCchhhh-cccchhhhh
Confidence            999999999999999963 248999999999999999999999999 999999864

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=99.93  E-value=1.7e-25  Score=183.04  Aligned_cols=130  Identities=49%  Similarity=0.792  Sum_probs=107.7

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCC------ChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270            1 MPLLRTALYGKGIEIYCAPTAD------SRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV   74 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~------~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~   74 (162)
                      .||++|.++.+||+|+++|++.      ...+|..++++||+||+||||+||++|.++.++...    .+.+ ....+..
T Consensus       162 fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~----~~~~-~~~~~~~  236 (297)
T cd07564         162 MPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADC----EDDE-EADPLEV  236 (297)
T ss_pred             CHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEcccccChhHccccc----cccc-ccccccc
Confidence            4899999999999999998874      367899999999999999999999999753222110    0000 0112346


Q ss_pred             cccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecC
Q 031270           75 VCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD  135 (162)
Q Consensus        75 ~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~  135 (162)
                      .|.|+|+|++|+|+++++++.++|++++++||++.+++.|..++++.|++|||+|.++|++
T Consensus       237 ~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~~~  297 (297)
T cd07564         237 LGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTVDR  297 (297)
T ss_pred             cCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceeeCC
Confidence            7899999999999999998768899999999999999999999999998899999999975

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=99.92  E-value=5.4e-25  Score=185.08  Aligned_cols=127  Identities=22%  Similarity=0.270  Sum_probs=102.4

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .||++|.|+++|||||++|++|+    ..+|..++++||+||+|||+++|++|.+. ++++..   ++.......+...|
T Consensus       230 fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~-~~~~~~---~~~g~~~~~~~~~f  305 (363)
T cd07587         230 HPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEV-FPNEFT---SGDGKPAHKDFGHF  305 (363)
T ss_pred             CcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEeccccccc-cccccc---cccccccccccccc
Confidence            59999999999999999999984    36899999999999999999999999752 221100   00000000123468


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeee
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLV  132 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~  132 (162)
                      +|+|+|++|+|++++++...+|+++++|||++.+++.|..++++.+ +|||+|...
T Consensus       306 ~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~-~r~~~y~~~  360 (363)
T cd07587         306 YGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMT-ARYEMYADF  360 (363)
T ss_pred             cceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCcc-CCHHHHHHH
Confidence            9999999999999998865789999999999999999999999998 999999743

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>PLN00202 beta-ureidopropionase

Probab=99.92  E-value=9.1e-25  Score=185.93  Aligned_cols=130  Identities=22%  Similarity=0.250  Sum_probs=104.4

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .||++|.++++|||||++|++|+    ..+|+.++++||+||+|||++||++|.+. ++....   ++.....+.+...|
T Consensus       251 FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~-~~~~~~---~~~g~~~~~~~~~f  326 (405)
T PLN00202        251 HPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINRVGTEV-FPNPFT---SGDGKPQHKDFGHF  326 (405)
T ss_pred             cHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEeccccccc-cccccc---cccccccccccccc
Confidence            48999999999999999999984    36899999999999999999999999742 111100   00000001122468


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecC
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD  135 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~  135 (162)
                      +|+|+|++|+|++++++..++|+++++|||++.+++.|..++++.| +|||+|...+.+
T Consensus       327 ~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~-rR~~ly~~~~~~  384 (405)
T PLN00202        327 YGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMT-ARYEMYADFFAE  384 (405)
T ss_pred             cceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccc-cCHhHHHHHHHh
Confidence            9999999999999999865689999999999999999999999998 999999865543

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=99.89  E-value=9.6e-23  Score=163.67  Aligned_cols=107  Identities=20%  Similarity=0.255  Sum_probs=94.6

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .||+.|.+  +|++++++|++|+   ..+|+.++++||+||+|||++||++|.+.                   ++..|.
T Consensus       146 fPe~~r~l--~gad~i~~~s~~~~~~~~~~~~~~~aRA~En~~~vv~~n~~G~~~-------------------~~~~~~  204 (256)
T PRK10438        146 FPVWSRNR--NDYDLALYVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGSDG-------------------NGHHYR  204 (256)
T ss_pred             CHHHHHhh--cCCCEEEEecCCCCCchHHHHHHHHHHHHhcCcEEEEecccccCC-------------------CCCEEc
Confidence            38999986  8999999999985   46899999999999999999999999751                   346799


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccce
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVL  129 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~  129 (162)
                      |+|+|+||+|++++++..++|++++++||++.+++.|..++++.| ||+..|
T Consensus       205 G~S~ivdP~G~vl~~~~~~~e~~i~~~idl~~~~~~R~~~~~l~~-r~~~~~  255 (256)
T PRK10438        205 GDSRIINPQGEIIATAEPHQATRIDAELSLEALQEYREKFPAWRD-ADEFTL  255 (256)
T ss_pred             CceEEECCCCcEEEEcCCCCcEEEEEEECHHHHHHHHHhCCcccc-CChhhc
Confidence            999999999999999976789999999999999999999999987 665543

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=99.89  E-value=1.1e-22  Score=166.39  Aligned_cols=113  Identities=18%  Similarity=0.165  Sum_probs=99.9

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .||+.|.++++||||+++|++|+   ..+|..++++||+||+|||++||++|.+                    ++..|+
T Consensus       158 fPe~~r~la~~GAdill~ps~~~~~~~~~w~~~~~aRA~En~~~vv~aN~~G~~--------------------~~~~~~  217 (291)
T cd07565         158 YPEIARECAYKGAELIIRIQGYMYPAKDQWIITNKANAWCNLMYTASVNLAGFD--------------------GVFSYF  217 (291)
T ss_pred             CcHHHHHHHHCCCeEEEECCcCCCCcchHHHHHHHHHHHhcCcEEEEecccccC--------------------CCceee
Confidence            48999999999999999999884   4689999999999999999999999975                    356789


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCcCC
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDHPA  138 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~~~  138 (162)
                      |+|+|+||+|++++++..++|+++++|||++.+++.|..+++     |.|+|++.++....
T Consensus       218 G~S~ivdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~-----~~~~~~~~~~~~~~  273 (291)
T cd07565         218 GESMIVNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGS-----ENNLYKLGHRGYVA  273 (291)
T ss_pred             eeeEEECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCC-----CCcHHHhhhhhhhc
Confidence            999999999999999976778999999999999999999877     33888887766543

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=99.88  E-value=1.6e-22  Score=163.00  Aligned_cols=113  Identities=29%  Similarity=0.377  Sum_probs=99.8

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT   70 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~   70 (162)
                      .|++.|.++.+||+|+++|++|+          ..+|+.++++||+||++||++||++|.+..                .
T Consensus       155 fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~----------------~  218 (279)
T TIGR03381       155 FPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVG----------------D  218 (279)
T ss_pred             ChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCC----------------C
Confidence            48999999999999999999862          358999999999999999999999997520                0


Q ss_pred             CCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270           71 PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS  130 (162)
Q Consensus        71 ~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~  130 (162)
                      ..+..|.|.|+|++|+|+++++++.++|++++++||++.++..|..++++.+ +||++|+
T Consensus       219 ~~~~~~~G~S~i~~p~G~il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~-~r~~~y~  277 (279)
T TIGR03381       219 GGEQTFYGSSFIADHTGELVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRD-RRPELYG  277 (279)
T ss_pred             CCcceEeeeEEEECCCCcEeecCCCCCCceEEEEeCHHHHHHHHhcCchhhh-CChhhcc
Confidence            1346789999999999999999976789999999999999999999999987 8999996

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.88  E-value=1.5e-22  Score=162.80  Aligned_cols=108  Identities=28%  Similarity=0.405  Sum_probs=95.8

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCCh---------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCC
Q 031270            1 MPLLRTALYGKGIEIYCAPTADSR---------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTP   71 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~~---------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~   71 (162)
                      .|++.|.++.+|++|+++|++|+.         .+|..+.++||+||+||||+||++|.+                    
T Consensus       149 fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~--------------------  208 (268)
T cd07580         149 FPETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE--------------------  208 (268)
T ss_pred             chHHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec--------------------
Confidence            388999999999999999999841         468889999999999999999999985                    


Q ss_pred             CCccccceeEEECCCCceeecCCC-CCccEEEEEechHHHHHHHhh--CCcCCCCCCccce
Q 031270           72 DSVVCAGGSVIISPSGTVLAGPNY-EGEALISADLDLGEIAREKFA--FDVVGHYSRPEVL  129 (162)
Q Consensus        72 ~~~~~~G~S~Iv~P~G~~la~~~~-~~E~iv~adiDl~~i~~~R~~--~~~~~~y~Rpd~~  129 (162)
                      ++..|.|+|+|++|+|++++++.. .+|++++++||++.++..|..  ++++.| +||++|
T Consensus       209 ~~~~~~G~S~ii~p~G~~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~-~r~~~y  268 (268)
T cd07580         209 RGQPFIGQSLIVGPDGWPLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLRD-RRPDLY  268 (268)
T ss_pred             cCceEeeeeEEECCCCCeeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhh-cCcccC
Confidence            346789999999999999999753 489999999999999999988  488888 899886

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=99.88  E-value=4e-22  Score=166.72  Aligned_cols=110  Identities=20%  Similarity=0.187  Sum_probs=97.7

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .||++|.++++||||+++|++|.   .++|..++++||+||+||||+||++|.+                    +...|.
T Consensus       171 fPE~~R~la~~GAelii~psa~~~~~~~~~~~~~rarA~eN~~yVv~aN~~G~~--------------------~~~~~~  230 (345)
T PRK13286        171 YPEIWRDCAMKGAELIVRCQGYMYPAKEQQVLVAKAMAWANNCYVAVANAAGFD--------------------GVYSYF  230 (345)
T ss_pred             ChHHHHHHHHcCCeEEEEccccCCCchHHHHHHHHHHHHHCCCEEEEEeccccc--------------------CCceee
Confidence            38999999999999999999884   4689999999999999999999999975                    345789


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecC
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD  135 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~  135 (162)
                      |+|+|++|+|++++++..++|++++++||++.++++|..+++.+|     +|++..+.
T Consensus       231 G~S~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~~n~-----~~~~~~~~  283 (345)
T PRK13286        231 GHSAIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQSQNH-----LFKLLHRG  283 (345)
T ss_pred             eeEEEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCcccc-----hhhhccce
Confidence            999999999999999876778999999999999999999999887     56655443

>PLN02747 N-carbamolyputrescine amidase

Probab=99.87  E-value=4.7e-22  Score=162.33  Aligned_cols=123  Identities=24%  Similarity=0.406  Sum_probs=102.9

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT   70 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~   70 (162)
                      .|++.|.++.+|++|+++|++|+          ..+|+.++++||+||+|||+++|++|.+. ++.+           ..
T Consensus       161 fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~-~~~~-----------~g  228 (296)
T PLN02747        161 FPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEI-LETE-----------HG  228 (296)
T ss_pred             chHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccc-cccc-----------cC
Confidence            48999999999999999999962          36799999999999999999999999741 1100           00


Q ss_pred             CCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCc
Q 031270           71 PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDH  136 (162)
Q Consensus        71 ~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~  136 (162)
                      .....|.|+|+|++|+|++++++...+|+++++|||++.++..|..++++.+ +|||+|...+..+
T Consensus       229 ~~~~~~~G~S~i~~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~-~r~~~~~~~~~~~  293 (296)
T PLN02747        229 PSKITFYGGSFIAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRD-RRPDLYKVLLTLD  293 (296)
T ss_pred             CcCceEeeeeEEECCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhh-cChhHHHHHHhhc
Confidence            1245789999999999999999976789999999999999999999999876 8999998655443

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=99.87  E-value=4.8e-22  Score=161.28  Aligned_cols=113  Identities=25%  Similarity=0.332  Sum_probs=100.1

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|++.|.++.+|+||+++|++++    ...|..+.++||+||++||+++|++|.+..                 .....|
T Consensus       167 fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~-----------------~~~~~~  229 (287)
T cd07568         167 FPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEAP-----------------WNIGEF  229 (287)
T ss_pred             CchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEeccccccCC-----------------CccceE
Confidence            48999999999999999999984    357988899999999999999999997520                 012478


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceee
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSL  131 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~  131 (162)
                      .|+|+|++|+|+++++++.++|++++++||++.+++.|..++++.| +||++|..
T Consensus       230 ~G~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~-~r~~~y~~  283 (287)
T cd07568         230 YGSSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYRD-RRPETYGE  283 (287)
T ss_pred             eceeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhh-cCHHHhHH
Confidence            8999999999999999877789999999999999999999999988 99999974

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

Probab=99.87  E-value=5.5e-22  Score=162.55  Aligned_cols=111  Identities=25%  Similarity=0.311  Sum_probs=97.5

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC-------------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS-------------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE   67 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~-------------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~   67 (162)
                      .|++.|.++.+|++|+++|+++.             ..+|...+++||+||++||+++|++|.+                
T Consensus       176 fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~----------------  239 (302)
T cd07569         176 WPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGME----------------  239 (302)
T ss_pred             cchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccC----------------
Confidence            48999999999999999975531             1367888899999999999999999975                


Q ss_pred             CCCCCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh-CCcCCCCCCccceeee
Q 031270           68 DLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA-FDVVGHYSRPEVLSLV  132 (162)
Q Consensus        68 ~~~~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~-~~~~~~y~Rpd~~~~~  132 (162)
                          ++..|+|+|+|++|+|++++++..++|+++++|||++.+++.|.. .+++.| +|||+|..+
T Consensus       240 ----~~~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~-~r~~~y~~~  300 (302)
T cd07569         240 ----DGCDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARH-RRPEHYGLI  300 (302)
T ss_pred             ----CCceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhh-cCHHHHhhh
Confidence                356789999999999999999976679999999999999999994 899998 899999744

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.

>PLN02798 nitrilase

Probab=99.86  E-value=1.9e-21  Score=158.21  Aligned_cols=110  Identities=25%  Similarity=0.383  Sum_probs=98.5

Q ss_pred             CcHHHHHHH-hCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270            1 MPLLRTALY-GKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV   75 (162)
Q Consensus         1 ~P~~~r~la-~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~   75 (162)
                      .|+++|.++ ++|++|+++|++++    ..+|+.++++||+||++||+++|++|.+.                   .+..
T Consensus       168 fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~~~-------------------~~~~  228 (286)
T PLN02798        168 FPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHN-------------------EKRE  228 (286)
T ss_pred             ChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCcCC-------------------CCce
Confidence            489999999 99999999999875    35899999999999999999999999741                   2467


Q ss_pred             ccceeEEECCCCceeecCCC-CCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270           76 CAGGSVIISPSGTVLAGPNY-EGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS  130 (162)
Q Consensus        76 ~~G~S~Iv~P~G~~la~~~~-~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~  130 (162)
                      |+|+|+|++|+|++++++.. ++|++++++||++.++..|..++++.| +|||.|.
T Consensus       229 ~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~-~~~~~~~  283 (286)
T PLN02798        229 SYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAEH-RRSLEFW  283 (286)
T ss_pred             eeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHHHHHHHhCcchhc-cchhhhh
Confidence            88999999999999998863 578999999999999999999999999 6999886

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.86  E-value=2.3e-21  Score=155.13  Aligned_cols=112  Identities=27%  Similarity=0.343  Sum_probs=97.1

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270            1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS   80 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S   80 (162)
                      .|++.|.++.+|++|+++|++|...+|...+++||+||++||++||++|.+. .               ...+..|.|+|
T Consensus       146 fpe~~r~~~~~Gadli~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~-~---------------~~~~~~~~G~S  209 (259)
T cd07577         146 FPEAARTLALKGADIIAHPANLVLPYCPKAMPIRALENRVFTITANRIGTEE-R---------------GGETLRFIGKS  209 (259)
T ss_pred             cchHHHHHHHcCCCEEEECCccCCchhhhhhhHhhhhcCceEEEEecCcccC-C---------------CCCCceEeeee
Confidence            4899999999999999999999877898889999999999999999999751 0               01346788999


Q ss_pred             EEECCCCceeecCCCCCccEEEEEechHHHHHHH--hhCCcCCCCCCccce
Q 031270           81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREK--FAFDVVGHYSRPEVL  129 (162)
Q Consensus        81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R--~~~~~~~~y~Rpd~~  129 (162)
                      +|++|+|++++++..++|++++++||++.++..|  ..++++.+ +||++|
T Consensus       210 ~i~~p~G~i~~~~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~~-~r~~~~  259 (259)
T cd07577         210 QITSPKGEVLARAPEDGEEVLVAEIDPRLARDKRINEENDIFKD-RRPEFY  259 (259)
T ss_pred             EEECCCCCEEeecCCCCCcEEEEEEchHHhhcccccccCchhhh-cCcccC
Confidence            9999999999998767899999999999988755  67888887 788876

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.85  E-value=1.3e-21  Score=159.06  Aligned_cols=102  Identities=17%  Similarity=0.156  Sum_probs=83.3

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCCh-----------------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCC
Q 031270            1 MPLLRTALYGKGIEIYCAPTADSR-----------------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPP   57 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~~-----------------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~   57 (162)
                      .||+.|.++++||+|+++|++|+.                       .+|+ ++++||+||+||||+||++|.+      
T Consensus       141 fPe~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~------  213 (279)
T cd07579         141 FPEAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA------  213 (279)
T ss_pred             CcHHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc------
Confidence            489999999999999999998632                       4888 5899999999999999999863      


Q ss_pred             CCccccCcccCCCCCCccccceeEEECCCCceeec----CCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270           58 PEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAG----PNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS  130 (162)
Q Consensus        58 ~~~~~~~~e~~~~~~~~~~~G~S~Iv~P~G~~la~----~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~  130 (162)
                                      ..+.|+|+|+||+|.++..    + ..+|+++++|||++.+.+   ..+++.+ ||||+|+
T Consensus       214 ----------------~~~~G~S~ii~P~G~v~~~~~~~~-~~~e~~l~a~id~~~~~~---~~~~~~~-rr~~~~~  269 (279)
T cd07579         214 ----------------RGYTGWSGVFGPDTFAFPRQEAAI-GDEEGIAWALIDTSNLDS---RYPTNVV-RRKDLVR  269 (279)
T ss_pred             ----------------cccccccEEECCCeEEcchhhccc-CCCCcEEEEEecchhhcc---cCCchhh-hhHHHHH
Confidence                            2368999999999999843    4 367889999999999887   3555555 5555554

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=99.85  E-value=5e-21  Score=154.82  Aligned_cols=114  Identities=28%  Similarity=0.415  Sum_probs=100.0

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC------------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS------------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED   68 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~------------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~   68 (162)
                      .|++.|.++.+|++|+++|++++            ..+|..+.++||+||++|||.||++|.+..               
T Consensus       156 fpe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~---------------  220 (284)
T cd07573         156 FPEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGD---------------  220 (284)
T ss_pred             chHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCC---------------
Confidence            48999999999999999999862            257888999999999999999999997410               


Q ss_pred             CCCCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceee
Q 031270           69 LTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSL  131 (162)
Q Consensus        69 ~~~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~  131 (162)
                       ...+..|.|+|+|++|+|+++++.+.++|++++++||++.++..|..++++.| +|+++|..
T Consensus       221 -~~~~~~~~G~S~i~~p~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~-~~~~~~~~  281 (284)
T cd07573         221 -PGSGITFYGSSFIADPFGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRD-RRPDLYGA  281 (284)
T ss_pred             -CCCCceeeceeEEECCCCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhh-cChhhhhh
Confidence             01256889999999999999999877789999999999999999999999988 89999974

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>PRK13287 amiF formamidase; Provisional

Probab=99.85  E-value=7.1e-21  Score=158.50  Aligned_cols=111  Identities=14%  Similarity=0.161  Sum_probs=98.0

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .|++.|.++.+||+|+++|++++   .+.|....++||+||+|||+++|++|.+                    ....++
T Consensus       170 fPe~~R~~a~~GAeill~~s~~~~~~~~~w~~~~~arA~en~~~vv~an~~G~~--------------------~~~~~~  229 (333)
T PRK13287        170 FPEMAREAAYKGANVMIRISGYSTQVREQWILTNRSNAWQNLMYTASVNLAGYD--------------------GVFYYF  229 (333)
T ss_pred             chHHHHHHHHCCCeEEEECCccCCcchhHHHHHHHHHHHhCCcEEEEEeccccC--------------------CCeeee
Confidence            38999999999999999999874   5789999999999999999999999975                    346788


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCc
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDH  136 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~  136 (162)
                      |+|+|+||+|++++++..+++++++++||++.++++|..+++-+     ++|+|..++.
T Consensus       230 G~S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~~n-----~~~~~~~~~~  283 (333)
T PRK13287        230 GEGQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGLEN-----NIYNLGHRGY  283 (333)
T ss_pred             eeeEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCccc-----cchhhcccce
Confidence            99999999999999998777899999999999999999998744     4777766554

>cd07576 R-amidase_like Pseudomonas sp

Probab=99.85  E-value=8.3e-21  Score=151.02  Aligned_cols=105  Identities=34%  Similarity=0.368  Sum_probs=93.6

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .|++.|.++++|+||+++|+++.   ...|..++++||+||++|+++||++|.+                    ++..|.
T Consensus       147 fpe~~~~~~~~gadii~~p~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~--------------------~~~~~~  206 (254)
T cd07576         147 FPELVRALALAGADLVLVPTALMEPYGFVARTLVPARAFENQIFVAYANRCGAE--------------------DGLTYV  206 (254)
T ss_pred             CCHHHHHHHHCCCCEEEECCccCCCcchhhhhhhHHHHHhCCCEEEEEcccCCC--------------------CCceee
Confidence            48999999999999999998764   3567888999999999999999999975                    345689


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcc
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPE  127 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd  127 (162)
                      |+|+|++|+|+++++...+ |++++++||++.++..|..++++.| +|+|
T Consensus       207 G~S~i~~p~G~il~~~~~~-e~~~~~~id~~~~~~~R~~~~~~~~-~~~~  254 (254)
T cd07576         207 GLSSIAGPDGTVLARAGRG-EALLVADLDPAALAAARRENPYLAD-RRPE  254 (254)
T ss_pred             eeeEEECCCCCEeEecCCC-CeEEEEEcCHHHHHhhhhcCchhhh-cCCC
Confidence            9999999999999998755 8999999999999999999999887 7775

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.84  E-value=1.1e-20  Score=151.69  Aligned_cols=109  Identities=26%  Similarity=0.400  Sum_probs=97.8

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT   70 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~   70 (162)
                      .|++.+.++.+|++|+++|++++          ..+|..+.++||+||++|||+||++|.+                   
T Consensus       148 fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-------------------  208 (269)
T cd07586         148 HPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE-------------------  208 (269)
T ss_pred             CcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-------------------
Confidence            48899999999999999999863          1468999999999999999999999975                   


Q ss_pred             CCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270           71 PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS  130 (162)
Q Consensus        71 ~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~  130 (162)
                       ++..|+|+|+|++|+|+++++...+++++++++||++.+++.|..++++.+ +|+++|.
T Consensus       209 -~~~~~~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~-~~~~~~~  266 (269)
T cd07586         209 -DGVYFWGGSRVVDPDGEVVAEAPLFEEDLLVAELDRSAIRRARFFSPTFRD-EDIRLVL  266 (269)
T ss_pred             -CCceEeCCcEEECCCCCEEEecCCccccEEEEEecHHHHHHHHhhCccccc-cChhhhh
Confidence             356788999999999999999876788999999999999999999999987 7898875

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.84  E-value=2.2e-20  Score=149.46  Aligned_cols=108  Identities=32%  Similarity=0.476  Sum_probs=96.3

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC-------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS-------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS   73 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~-------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~   73 (162)
                      .|++.|.++.+|+||+++|+++.       .+.|...+++||+||++||+++|++|..                    ++
T Consensus       145 ~pe~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~--------------------~~  204 (261)
T cd07585         145 FPENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD--------------------GG  204 (261)
T ss_pred             CcHHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC--------------------CC
Confidence            48999999999999999998763       3568888999999999999999999974                    24


Q ss_pred             ccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh--CCcCCCCCCccce
Q 031270           74 VVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA--FDVVGHYSRPEVL  129 (162)
Q Consensus        74 ~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~--~~~~~~y~Rpd~~  129 (162)
                      ..|.|.|+|++|+|++++++..++|++++++||++.++..|..  .+++.| ||+++|
T Consensus       205 ~~~~G~S~i~~p~G~v~~~~~~~~e~~l~~~id~~~~~~~r~~~~~~~~~~-~~~~~~  261 (261)
T cd07585         205 EVFPGGAMILDPYGRVLAETTSGGDGMVVADLDLDLINTVRGRRWISFLRA-RRPELY  261 (261)
T ss_pred             ceecceEEEECCCCCEEeccCCCCCcEEEEEecHHHHHHhhccccCccccc-cCccCC
Confidence            5788999999999999999987889999999999999999975  688988 888876

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=99.84  E-value=2.5e-20  Score=150.37  Aligned_cols=111  Identities=31%  Similarity=0.400  Sum_probs=96.9

Q ss_pred             CcHHHHHH-HhCCCcEEEEeCCCC---h-hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270            1 MPLLRTAL-YGKGIEIYCAPTADS---R-DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV   75 (162)
Q Consensus         1 ~P~~~r~l-a~~Gaei~v~p~a~~---~-~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~   75 (162)
                      .||+.+.+ +.+|++++++|++|.   . .+|..++++||+||+|||+++|++|.++                   ....
T Consensus       154 fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~~g~~~-------------------~~~~  214 (274)
T COG0388         154 FPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRAGFDG-------------------AGLE  214 (274)
T ss_pred             CHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecccCCCC-------------------CccE
Confidence            48866666 899999999999984   3 7999999999999999999999999862                   1378


Q ss_pred             ccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270           76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS  130 (162)
Q Consensus        76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~  130 (162)
                      |+|+|+|++|+|++++++..++|+++++|+|++.+...|..++.+.+.+|.+.+.
T Consensus       215 ~~G~S~i~~p~G~v~~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~  269 (274)
T COG0388         215 FCGHSAIIDPDGEVLAEAGEEEEGVLLADIDLAELAEVRRKIPVLKDRRRFDLDV  269 (274)
T ss_pred             EecceEEECCCccEEeecCCCCCcEEEEEECHHHHHHHHhhCcchhhcccchhhh
Confidence            9999999999999999997558999999999999999999999888766666554

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.83  E-value=3.7e-20  Score=147.87  Aligned_cols=102  Identities=30%  Similarity=0.478  Sum_probs=93.7

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .|++.|.++.+|++|+++|++|+   ...|....++||+||++||+++|++|.+                    ++..+.
T Consensus       151 fpe~~r~~~~~gadll~~ps~~~~~~~~~~~~~~~~rA~En~~~vv~~n~~g~~--------------------~~~~~~  210 (258)
T cd07584         151 FPEVARILTLKGAEVIFCPSAWREQDADIWDINLPARALENTVFVAAVNRVGNE--------------------GDLVLF  210 (258)
T ss_pred             ChHHHHHHHHCCCcEEEECCccCCCCchHHHHHHHHHHHhCCcEEEEECccccC--------------------CCceec
Confidence            48999999999999999999985   4689989999999999999999999975                    345788


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH  122 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~  122 (162)
                      |+|+|++|+|+++++++.+++++++++||++.++..|..++++.+
T Consensus       211 G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~p~~~~  255 (258)
T cd07584         211 GKSKILNPRGQVLAEASEEAEEILYAEIDLDAIADYRMTLPYLKD  255 (258)
T ss_pred             ceeEEECCCCceeeecCCCCCcEEEEEeCHHHHHHHHhhCchhhh
Confidence            999999999999999977789999999999999999999999988

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

Probab=99.83  E-value=4.1e-20  Score=149.38  Aligned_cols=111  Identities=23%  Similarity=0.295  Sum_probs=92.4

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|+++|.++.+|++|+++|++++    ..+|...+++||+||+|||+++|++|.+...                ..+..+
T Consensus       158 fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~----------------~~~~~~  221 (280)
T cd07574         158 FPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWS----------------PAVDVN  221 (280)
T ss_pred             cHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCCCCCCCCc----------------cccccc
Confidence            48999999999999999999874    2356667899999999999999999975200                024578


Q ss_pred             cceeEEECCC------CceeecCCCCCccEEEEEechHHHHHHHhhCCc--CCCCCCccc
Q 031270           77 AGGSVIISPS------GTVLAGPNYEGEALISADLDLGEIAREKFAFDV--VGHYSRPEV  128 (162)
Q Consensus        77 ~G~S~Iv~P~------G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~--~~~y~Rpd~  128 (162)
                      +|+|+|++|+      |.+++++..++|++++++||++.+++.|..+++  +.+ +|||+
T Consensus       222 ~G~S~i~~P~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~-~~~~~  280 (280)
T cd07574         222 YGQAAVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRD-WREDL  280 (280)
T ss_pred             cccceeecCCCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCccc-CcccC
Confidence            8999999996      889999876779999999999999999999765  555 78874

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.82  E-value=6.9e-20  Score=145.91  Aligned_cols=103  Identities=28%  Similarity=0.419  Sum_probs=93.2

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .|++.|.++.+|+|++++|++|+   ..+|+.+.++||+||++||+.+|++|.+                    .+..|.
T Consensus       148 ~pe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~--------------------~~~~~~  207 (253)
T cd07583         148 FPELFRKLALEGAEILFVPAEWPAARIEHWRTLLRARAIENQAFVVACNRVGTD--------------------GGNEFG  207 (253)
T ss_pred             cHHHHHHHHHcCCcEEEECCCCCCCchHHHHHHHHHHHHHhCCEEEEEcCcccC--------------------CCceec
Confidence            38899999999999999999984   4689999999999999999999999985                    355788


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCC
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSR  125 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~R  125 (162)
                      |.|+|++|+|+++++.+. +++++++|||++.+++.|..++++.+ ||
T Consensus       208 G~S~ii~p~G~il~~~~~-~~~~~~~~i~l~~~~~~r~~~~~~~~-~~  253 (253)
T cd07583         208 GHSMVIDPWGEVLAEAGE-EEEILTAEIDLEEVAEVRKKIPVFKD-RR  253 (253)
T ss_pred             ceeEEECCCchhheecCC-CceEEEEEecHHHHHHHHHhCCchhh-cC
Confidence            999999999999999864 88999999999999999999999887 54

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.82  E-value=9.4e-20  Score=148.81  Aligned_cols=105  Identities=25%  Similarity=0.344  Sum_probs=90.5

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|++.|.++++|++|+++|++|+    ..+|..++++||+||++||+++|++|.+..                ......|
T Consensus       178 fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~----------------~~~~~~~  241 (294)
T cd07582         178 YPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANSGGIYGS----------------PYPADSF  241 (294)
T ss_pred             ChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecccccCcc----------------cccCcee
Confidence            48999999999999999999873    367988999999999999999999987410                0013578


Q ss_pred             cceeEEECCCCceeecCCCC-CccEEEEEechHHHHHHHhhCCcCC
Q 031270           77 AGGSVIISPSGTVLAGPNYE-GEALISADLDLGEIAREKFAFDVVG  121 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~-~E~iv~adiDl~~i~~~R~~~~~~~  121 (162)
                      .|+|+|++|+|++++++... +|++++++||++.+++.|..+++-+
T Consensus       242 ~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~~~  287 (294)
T cd07582         242 GGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGMHN  287 (294)
T ss_pred             cceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCccc
Confidence            89999999999999999766 7899999999999999999887754

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=99.81  E-value=2.3e-19  Score=143.48  Aligned_cols=102  Identities=28%  Similarity=0.456  Sum_probs=91.6

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|++.|.++.+|+||+++|++++    ..+|..++++||+||++||+.+|++|.+.                   .+..|
T Consensus       158 ~pe~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~-------------------~~~~~  218 (265)
T cd07572         158 FPELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHE-------------------AGRET  218 (265)
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccCC-------------------CCCee
Confidence            48999999999999999999874    45798899999999999999999999752                   34678


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH  122 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~  122 (162)
                      .|.|+|++|+|+++++++.+ |++++++||++.+++.|..++++.|
T Consensus       219 ~G~S~i~~p~G~il~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~  263 (265)
T cd07572         219 YGHSMIVDPWGEVLAEAGEG-EGVVVAEIDLDRLEEVRRQIPVLKH  263 (265)
T ss_pred             cceeEEECCCcHHHhhcCCC-CcEEEEEeCHHHHHHHHHhCcchhh
Confidence            99999999999999998755 8999999999999999999998876

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=99.79  E-value=2e-19  Score=147.86  Aligned_cols=90  Identities=21%  Similarity=0.091  Sum_probs=78.6

Q ss_pred             CcHHHHHHHhC-CCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270            1 MPLLRTALYGK-GIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV   75 (162)
Q Consensus         1 ~P~~~r~la~~-Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~   75 (162)
                      .||+.|.++.+ |++|+++|++|.    ..+|..++++||+||||||++||++|..                       .
T Consensus       185 FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~~vi~~N~~g~~-----------------------~  241 (299)
T cd07567         185 FKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGVNLLAANYNNPS-----------------------A  241 (299)
T ss_pred             chHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCceEEEecCCCCc-----------------------C
Confidence            48999999999 999999999984    3489999999999999999999999862                       2


Q ss_pred             ccceeEEECCC-CceeecCCC-CCccEEEEEechHHHHHH
Q 031270           76 CAGGSVIISPS-GTVLAGPNY-EGEALISADLDLGEIARE  113 (162)
Q Consensus        76 ~~G~S~Iv~P~-G~~la~~~~-~~E~iv~adiDl~~i~~~  113 (162)
                      ++|+|+|++|+ |++++++.. .+|+++++|||++..++.
T Consensus       242 ~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~~  281 (299)
T cd07567         242 GMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRRP  281 (299)
T ss_pred             ccccceEEcCCCCcEEEEecCCCCceEEEEEccCCccccc
Confidence            57999999999 999999853 468899999998877543

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.79  E-value=4.6e-19  Score=141.90  Aligned_cols=101  Identities=27%  Similarity=0.472  Sum_probs=87.7

Q ss_pred             cHHHHHHHhCCCcEEEEeCCCCh-----hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            2 PLLRTALYGKGIEIYCAPTADSR-----DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         2 P~~~r~la~~Gaei~v~p~a~~~-----~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      |++.|.++.+|++|+++|++|..     .+|    .+||+||+||||.+|++|.+                    ++..|
T Consensus       152 pe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~----~~rA~en~~~vv~an~~G~~--------------------~~~~~  207 (258)
T cd07578         152 FETARLLALGGADVICHISNWLAERTPAPYW----INRAFENGCYLIESNRWGLE--------------------RGVQF  207 (258)
T ss_pred             hHHHHHHHHcCCCEEEEcCCCCCCCCcchHH----HHhhhcCCeEEEEecceecc--------------------CCcce
Confidence            88999999999999999999852     234    58999999999999999975                    34678


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh-CCcCCCCCCccc
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA-FDVVGHYSRPEV  128 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~-~~~~~~y~Rpd~  128 (162)
                      .|+|+|++|+|++++... .+|+++++|||++.++..|.. ++++.+ |||++
T Consensus       208 ~G~S~ii~p~G~il~~~~-~~e~~~~a~id~~~~~~~r~~~~~~~~~-~~~~~  258 (258)
T cd07578         208 SGGSCIIEPDGTIQASID-SGDGVALGEIDLDRARHRQFPGELVFTA-RRPEL  258 (258)
T ss_pred             eeEEEEECCCCcEeeccC-CCCceEEEEecchHhhhhhcccchhhhh-hccCC
Confidence            999999999999999875 678999999999999999975 788887 88863

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.77  E-value=2.4e-18  Score=137.37  Aligned_cols=100  Identities=19%  Similarity=0.341  Sum_probs=88.7

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .|++.|.++.  ++++++|++|+   ..+|....++||+||++||++||++|.+.                   .+..|.
T Consensus       145 ~pe~~r~~~~--a~lil~~s~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~-------------------~~~~~~  203 (252)
T cd07575         145 FPVWSRNTND--YDLLLYVANWPAPRRAAWDTLLKARAIENQAYVIGVNRVGTDG-------------------NGLEYS  203 (252)
T ss_pred             ChHHHHhhcC--CCEEEEeCCCCCCchHHHHHHhHHHHhhccceEEEecccccCC-------------------CCceEc
Confidence            3888888765  99999999884   46899999999999999999999999752                   246788


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH  122 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~  122 (162)
                      |+|+|++|+|+++++...+ |+++++|||++.++..|..++++.+
T Consensus       204 G~S~i~~p~G~~l~~~~~~-e~~i~~~id~~~~~~~r~~~~~~~~  247 (252)
T cd07575         204 GDSAVIDPLGEPLAEAEED-EGVLTATLDKEALQEFREKFPFLKD  247 (252)
T ss_pred             ceeEEECCCCceeeEcCCC-ceEEEEEECHHHHHHHHhhCCcccc
Confidence            9999999999999998755 9999999999999999999999887

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.77  E-value=3.5e-18  Score=136.10  Aligned_cols=99  Identities=30%  Similarity=0.436  Sum_probs=89.5

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV   75 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~   75 (162)
                      .|+..|.++.+|++|+++|++|.     .++|..++++||+||++||+.||++|.                        .
T Consensus       152 ~pe~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~------------------------~  207 (255)
T cd07581         152 FPELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP------------------------R  207 (255)
T ss_pred             CHHHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC------------------------C
Confidence            48999999999999999999883     368889999999999999999999985                        3


Q ss_pred             ccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCC
Q 031270           76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSR  125 (162)
Q Consensus        76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~R  125 (162)
                      |.|.|+|++|+|++++++. .+|++++++||++.+++.|..++++.+ ||
T Consensus       208 ~~G~S~i~~p~G~i~~~~~-~~~~~l~~~id~~~~~~~r~~~~~~~~-~~  255 (255)
T cd07581         208 GIGRSMVVDPLGVVLADLG-EREGLLVADIDPERVEEAREALPVLEN-RR  255 (255)
T ss_pred             cccceEEECCCcceeeecC-CCCcEEEEEeCHHHHHHHHHhCcchhc-CC
Confidence            6799999999999999986 469999999999999999999999876 54

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=99.73  E-value=7.2e-18  Score=134.86  Aligned_cols=99  Identities=22%  Similarity=0.204  Sum_probs=85.4

Q ss_pred             cHH-HHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270            2 PLL-RTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV   75 (162)
Q Consensus         2 P~~-~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~   75 (162)
                      |++ .|.++++|++|+++|++++     ...|..++++||+||++|||++|++|..                    ++..
T Consensus       151 pe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~--------------------~~~~  210 (261)
T cd07570         151 PDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ--------------------DDLV  210 (261)
T ss_pred             CCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC--------------------ceEE
Confidence            777 9999999999999999874     2457788999999999999999998874                    3567


Q ss_pred             ccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270           76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH  122 (162)
Q Consensus        76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~  122 (162)
                      |.|+|+|++|+|+++++++.+  +.+++++|++.++..|..++...+
T Consensus       211 ~~G~S~ii~p~G~vl~~~~~~--~~~~~~id~~~~~~~r~~~~~~~~  255 (261)
T cd07570         211 FDGGSFIADNDGELLAEAPRF--EEDLADVDLDRLRSERRRNSSFLD  255 (261)
T ss_pred             EECceEEEcCCCCEEEecCcc--eEEEEEEEEecCcccccccCCCcc
Confidence            899999999999999998633  689999999999999988766543

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=99.69  E-value=2.7e-16  Score=124.33  Aligned_cols=97  Identities=34%  Similarity=0.570  Sum_probs=87.9

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      +|+..+.++.+|++++++|+++.   ..+|..++++||+||++|++.||.+|..                    ++..|.
T Consensus       148 ~~~~~~~~~~~g~dli~~ps~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~--------------------~~~~~~  207 (253)
T cd07197         148 FPELARELALKGADIILVPAAWPTARREHWELLLRARAIENGVYVVAANRVGEE--------------------GGLEFA  207 (253)
T ss_pred             CcHHHHHHHHCCCcEEEECCcCCCcchHHHHHHHHHHHHHhCCeEEEecCCCCC--------------------CCcccc
Confidence            58889999999999999999986   3588899999999999999999999975                    356789


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCC
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFD  118 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~  118 (162)
                      |.|+|++|+|++++....+ +++++++||++.+++.|..+.
T Consensus       208 G~S~i~~p~G~~~~~~~~~-~~~~~~~id~~~~~~~r~~~~  247 (253)
T cd07197         208 GGSMIVDPDGEVLAEASEE-EGILVAELDLDELREARKRWS  247 (253)
T ss_pred             ceeEEECCCCceeeecCCC-CcEEEEEeCHHHHHHHHhhCC
Confidence            9999999999999998766 999999999999999998763

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>PRK13981 NAD synthetase; Provisional

Probab=99.60  E-value=3.6e-15  Score=131.22  Aligned_cols=89  Identities=26%  Similarity=0.320  Sum_probs=79.3

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV   75 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~   75 (162)
                      .|++.|.++.+|++|+++|++++     ...|..++++||+||+||||+||++|.+                    +...
T Consensus       150 ~pe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~--------------------~~~~  209 (540)
T PRK13981        150 NPEPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ--------------------DELV  209 (540)
T ss_pred             CCcHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC--------------------CceE
Confidence            48899999999999999999874     2456788999999999999999999975                    3568


Q ss_pred             ccceeEEECCCCceeecCCCCCccEEEEEechHH
Q 031270           76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLGE  109 (162)
Q Consensus        76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~  109 (162)
                      |.|+|+|++|+|++++++..++|+++++|+|++.
T Consensus       210 f~G~S~i~dp~G~il~~~~~~~e~~l~~did~~~  243 (540)
T PRK13981        210 FDGASFVLNADGELAARLPAFEEQIAVVDFDRGE  243 (540)
T ss_pred             EeCceEEECCCCCEeeecCCCCCcEEEEEEeecC
Confidence            9999999999999999998788999999999863

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.57  E-value=2.5e-15  Score=122.24  Aligned_cols=112  Identities=25%  Similarity=0.266  Sum_probs=99.9

Q ss_pred             cHHHHHHHhCCCcEEEEeCCCC-------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270            2 PLLRTALYGKGIEIYCAPTADS-------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV   74 (162)
Q Consensus         2 P~~~r~la~~Gaei~v~p~a~~-------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~   74 (162)
                      |+.++.++.+|++++|.|++|.       ..+|..++++||..|+++|+.+|..++..                   ..+
T Consensus       177 ~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s-------------------~~y  237 (298)
T KOG0806|consen  177 YDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSPARTGS-------------------GIY  237 (298)
T ss_pred             cchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCcCcCCc-------------------eee
Confidence            6889999999999999999995       47899999999999999999999998751                   345


Q ss_pred             cccc-eeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeec
Q 031270           75 VCAG-GSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVR  134 (162)
Q Consensus        75 ~~~G-~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~  134 (162)
                      ..+| +|.+++|+|++|+.+. ++++++++++|++.+.+.|+.+++..+ +|+|+|.+.+.
T Consensus       238 ~~~gshs~~~~p~gkvl~a~~-~~~e~~~a~~d~~~~~~~rq~~~~~~~-r~~d~y~~~~~  296 (298)
T KOG0806|consen  238 APRGSHSIMVNPTGKVLAAAV-EKEEIIYADVDPSAIASRRQGLPVFRQ-RRLDLYSLDLF  296 (298)
T ss_pred             ecCCcceeecCCcceEeeecc-CCCccccccCCHHHHHHHhcccchhhc-cchhhhhhhcc
Confidence            6778 9999999999999996 556699999999999999999999988 99999986543

>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.53  E-value=1.6e-14  Score=115.35  Aligned_cols=126  Identities=23%  Similarity=0.217  Sum_probs=105.5

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCC----ChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTAD----SRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~----~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      +|+.+-...++||+|++.|++.    +...|....|..|+.|.||+.+.|++|++ .+|.+..   +++..-.+.|.-.|
T Consensus       240 hplnwlmy~lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgte-vfpneft---sgdgkpah~dfghf  315 (387)
T KOG0808|consen  240 HPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTE-VFPNEFT---SGDGKPAHNDFGHF  315 (387)
T ss_pred             CchhhhhhhccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccc-cCCCccc---CCCCCccccccccc
Confidence            6999999999999999999997    35789999999999999999999999986 5666532   33333345566689


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceee
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSL  131 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~  131 (162)
                      +|.|.+..||+..--......++++++++|++.+++.+..|.+-.- .|-|+|.-
T Consensus       316 ygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt-~ryemya~  369 (387)
T KOG0808|consen  316 YGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMT-ARYEMYAD  369 (387)
T ss_pred             ccceeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceeh-hhHHHHHH
Confidence            9999999999987666666799999999999999999988877665 77787763

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)

Probab=99.48  E-value=1.5e-13  Score=111.16  Aligned_cols=80  Identities=23%  Similarity=0.253  Sum_probs=69.5

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCC---C----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270            1 MPLLRTALYGKGIEIYCAPTAD---S----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS   73 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~---~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~   73 (162)
                      .|++.|.++.+|++++++|+++   .    ..+|..++++||+||++|||+||+.                         
T Consensus       165 fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~-------------------------  219 (270)
T cd07571         165 FPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANT-------------------------  219 (270)
T ss_pred             ChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCC-------------------------
Confidence            4899999999999999999863   1    2355677899999999999999962                         


Q ss_pred             ccccceeEEECCCCceeecCCCCCccEEEEEechHH
Q 031270           74 VVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGE  109 (162)
Q Consensus        74 ~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~  109 (162)
                          |.|+|+||+|++++++..++|+++++|||++.
T Consensus       220 ----G~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~  251 (270)
T cd07571         220 ----GISAVIDPDGRIVARLPLFEAGVLVAEVPLRT  251 (270)
T ss_pred             ----eeeEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence                67999999999999997778999999999865

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.

>PRK02628 nadE NAD synthetase; Reviewed

Probab=99.43  E-value=7.4e-13  Score=119.50  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=82.2

Q ss_pred             cHH-HHHHHhCCCcEEEEeCCCC----hhhH-HHHHHHHhHhcCceEEEcC-cccccCCCCCCCCccccCcccCCCCCCc
Q 031270            2 PLL-RTALYGKGIEIYCAPTADS----RDVW-QASMTHIALEGGCFVLSAN-QFCRRKDYPPPPEYVFSGIEEDLTPDSV   74 (162)
Q Consensus         2 P~~-~r~la~~Gaei~v~p~a~~----~~~w-~~~~~arA~En~~fVv~aN-~~g~~~~~~~~~~~~~~~~e~~~~~~~~   74 (162)
                      |+. .+.|+++||+|+++|++|+    ..+| ..+.+++|.++++++|++| ++|..                   .++.
T Consensus       184 Pe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~-------------------~~~~  244 (679)
T PRK02628        184 PIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGES-------------------TTDL  244 (679)
T ss_pred             cCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccC-------------------CCCe
Confidence            665 5899999999999999985    3355 4677889999865555555 55532                   1457


Q ss_pred             cccceeEEECCCCceeecCCC--CCccEEEEEechHHHHHHHhhCCcCCCCCC
Q 031270           75 VCAGGSVIISPSGTVLAGPNY--EGEALISADLDLGEIAREKFAFDVVGHYSR  125 (162)
Q Consensus        75 ~~~G~S~Iv~P~G~~la~~~~--~~E~iv~adiDl~~i~~~R~~~~~~~~y~R  125 (162)
                      .|.|+|+|++ +|++++++..  .+|+++++|||++.++..|..++++.+ +|
T Consensus       245 vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d-~~  295 (679)
T PRK02628        245 AWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDD-NA  295 (679)
T ss_pred             EEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCccc-ch
Confidence            8999999998 9999999863  456799999999999999999988877 55

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=99.37  E-value=2.3e-12  Score=116.63  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=76.7

Q ss_pred             CcHHHHH-HHhCCCcEEEEeCCCChhhHHHHHHHHhHhc------CceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270            1 MPLLRTA-LYGKGIEIYCAPTADSRDVWQASMTHIALEG------GCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS   73 (162)
Q Consensus         1 ~P~~~r~-la~~Gaei~v~p~a~~~~~w~~~~~arA~En------~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~   73 (162)
                      .|+..+. |+++||+|+++|++++........|+++++|      ++| |+||++|.+                   .+.
T Consensus       179 fPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vyaN~~Ge~-------------------~~~  238 (700)
T PLN02339        179 TPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYANQRGCD-------------------GGR  238 (700)
T ss_pred             CChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEEcCCccC-------------------CCc
Confidence            3788885 9999999999999874211123444555555      777 589999853                   134


Q ss_pred             ccccceeEEECCCCceeecCCCC---CccEEEEEechHHHHHHHhhCCcCCC
Q 031270           74 VVCAGGSVIISPSGTVLAGPNYE---GEALISADLDLGEIAREKFAFDVVGH  122 (162)
Q Consensus        74 ~~~~G~S~Iv~P~G~~la~~~~~---~E~iv~adiDl~~i~~~R~~~~~~~~  122 (162)
                      ..|.|+|+| +|+|++++++..+   +++++++|||++.++..|..++.+.+
T Consensus       239 lvf~G~S~I-~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~  289 (700)
T PLN02339        239 LYYDGCACI-VVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFRE  289 (700)
T ss_pred             eEEcCceEE-eCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhh
Confidence            678888988 5899999998653   56799999999999999988887765

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

Probab=99.26  E-value=4.6e-12  Score=104.05  Aligned_cols=64  Identities=19%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             cHHHHHHHhCCCcEEEEeCCCCh------------hhH---HHHHHHHhH------hcCceEEEcCcccccCCCCCCCCc
Q 031270            2 PLLRTALYGKGIEIYCAPTADSR------------DVW---QASMTHIAL------EGGCFVLSANQFCRRKDYPPPPEY   60 (162)
Q Consensus         2 P~~~r~la~~Gaei~v~p~a~~~------------~~w---~~~~~arA~------En~~fVv~aN~~g~~~~~~~~~~~   60 (162)
                      ||+.|.|+++||+|+++|++|+.            .+|   ..+.++||+      |||+|||+||++|.+         
T Consensus       182 ~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~~eN~~~vv~~Nr~G~~---------  252 (295)
T cd07566         182 FEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPLEGTQVVFCNRIGTE---------  252 (295)
T ss_pred             HHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccccCCCCceEEEEEeccCcc---------
Confidence            49999999999999999999842            133   344556664      999999999999986         


Q ss_pred             cccCcccCCCCCCccccceeEEECC
Q 031270           61 VFSGIEEDLTPDSVVCAGGSVIISP   85 (162)
Q Consensus        61 ~~~~~e~~~~~~~~~~~G~S~Iv~P   85 (162)
                                 ++..|.|+|+|++=
T Consensus       253 -----------~~~~f~G~S~i~~~  266 (295)
T cd07566         253 -----------NDTLYAGSSAVIGI  266 (295)
T ss_pred             -----------CCceecCccceeee
Confidence                       46789999999863

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed

Probab=99.18  E-value=8.2e-11  Score=102.87  Aligned_cols=79  Identities=18%  Similarity=0.129  Sum_probs=67.7

Q ss_pred             CcHHHHHHHhCCCcEEEEeCC--C-C--h--hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCC
Q 031270            1 MPLLRTALYGKGIEIYCAPTA--D-S--R--DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDS   73 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a--~-~--~--~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~   73 (162)
                      .|+..|.++.+|+|++++|++  | +  .  .++..+.++||+||+++++.+|.                          
T Consensus       385 fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n--------------------------  438 (505)
T PRK00302        385 FPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATN--------------------------  438 (505)
T ss_pred             ChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecC--------------------------
Confidence            388999999999999999998  3 1  2  24556689999999999999975                          


Q ss_pred             ccccceeEEECCCCceeecCCCCCccEEEEEechH
Q 031270           74 VVCAGGSVIISPSGTVLAGPNYEGEALISADLDLG  108 (162)
Q Consensus        74 ~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~  108 (162)
                         .|.|+|+||+|+++++.+.++++++++++|+.
T Consensus       439 ---~G~Saiidp~G~i~~~~~~~~~~~l~~~i~~~  470 (505)
T PRK00302        439 ---TGITAVIDPLGRIIAQLPQFTEGVLDGTVPPT  470 (505)
T ss_pred             ---ceeeEEECCCCCEeeecCCCceeEEEEEeccC
Confidence               27899999999999999878999999999973

>TIGR00546 lnt apolipoprotein N-acyltransferase

Probab=98.71  E-value=2.8e-08  Score=84.28  Aligned_cols=59  Identities=29%  Similarity=0.272  Sum_probs=50.4

Q ss_pred             cHHHHHHHhCCCcEEEEeCCCC-------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270            2 PLLRTALYGKGIEIYCAPTADS-------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV   74 (162)
Q Consensus         2 P~~~r~la~~Gaei~v~p~a~~-------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~   74 (162)
                      |+..|.++.+|+|++++|++.+       ..++..+.+.||+||++|++.||..                          
T Consensus       326 p~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n~--------------------------  379 (391)
T TIGR00546       326 PDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATNT--------------------------  379 (391)
T ss_pred             hHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecCC--------------------------
Confidence            8899999999999999999742       2345577899999999999999972                          


Q ss_pred             cccceeEEECCCCce
Q 031270           75 VCAGGSVIISPSGTV   89 (162)
Q Consensus        75 ~~~G~S~Iv~P~G~~   89 (162)
                         |.|+|+||+|++
T Consensus       380 ---G~S~vidp~G~i  391 (391)
T TIGR00546       380 ---GISAVIDPRGRT  391 (391)
T ss_pred             ---ceeEEECCCCCC
Confidence               679999999975

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.

>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

Probab=98.34  E-value=2.4e-06  Score=75.39  Aligned_cols=77  Identities=27%  Similarity=0.322  Sum_probs=64.4

Q ss_pred             cHHHHHHHhCCCcEEEEeCCCC-----hhhHHH--HHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270            2 PLLRTALYGKGIEIYCAPTADS-----RDVWQA--SMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV   74 (162)
Q Consensus         2 P~~~r~la~~Gaei~v~p~a~~-----~~~w~~--~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~   74 (162)
                      |+..|....||+|+++++|+..     ...|++  +.+.||+|++.+++-++..                          
T Consensus       397 ~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRAtNt--------------------------  450 (518)
T COG0815         397 PELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRATNT--------------------------  450 (518)
T ss_pred             hHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEEcCC--------------------------
Confidence            7889999999999999998852     234433  4589999999999988774                          


Q ss_pred             cccceeEEECCCCceeecCCCCCccEEEEEech
Q 031270           75 VCAGGSVIISPSGTVLAGPNYEGEALISADLDL  107 (162)
Q Consensus        75 ~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl  107 (162)
                         |-|.||||+|++++..+.+..+++.+.+-+
T Consensus       451 ---GiSavIdp~Gri~~~l~~~~~~~l~~~v~~  480 (518)
T COG0815         451 ---GISAVIDPRGRILAQLPYFTRGVLDATVPL  480 (518)
T ss_pred             ---cceEEECCCCCEEeecCCCCcceeeeeecc
Confidence               568999999999999988899998888764

>PRK12291 apolipoprotein N-acyltransferase; Reviewed

Probab=97.27  E-value=0.00057  Score=58.94  Aligned_cols=39  Identities=10%  Similarity=-0.009  Sum_probs=31.9

Q ss_pred             CCCcEEEEeCCCC-------hhhHHHHHHHHhHhcCceEEEcCccc
Q 031270           11 KGIEIYCAPTADS-------RDVWQASMTHIALEGGCFVLSANQFC   49 (162)
Q Consensus        11 ~Gaei~v~p~a~~-------~~~w~~~~~arA~En~~fVv~aN~~g   49 (162)
                      +|+|++++++++.       ..+|...++.||+||+.+++.+...|
T Consensus       359 ~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvratNtG  404 (418)
T PRK12291        359 GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANGS  404 (418)
T ss_pred             cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCCc
Confidence            9999999998741       24667788999999999999987743

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]

Probab=96.58  E-value=0.0076  Score=52.90  Aligned_cols=90  Identities=21%  Similarity=0.323  Sum_probs=64.8

Q ss_pred             HHHhCCCcEEEEeCCCChhh------HHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270            7 ALYGKGIEIYCAPTADSRDV------WQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS   80 (162)
Q Consensus         7 ~la~~Gaei~v~p~a~~~~~------w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S   80 (162)
                      .|+++|+||++..+.+....      -..+.-+-+...++| +++|+-|-+                   ++.+.|.|.|
T Consensus       187 ~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvY-lyaNqrGCD-------------------G~RlYydGca  246 (706)
T KOG2303|consen  187 DMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVY-LYANQRGCD-------------------GDRLYYDGCA  246 (706)
T ss_pred             hhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEE-EeeccCCCC-------------------CceeEecchh
Confidence            58999999999987763211      122334455555555 678998875                   2456777877


Q ss_pred             EEECCCCceeecCC---CCCccEEEEEechHHHHHHHhhC
Q 031270           81 VIISPSGTVLAGPN---YEGEALISADLDLGEIAREKFAF  117 (162)
Q Consensus        81 ~Iv~P~G~~la~~~---~~~E~iv~adiDl~~i~~~R~~~  117 (162)
                      +|+ -+|+++|+..   -.+-+++.|.+|+++++..|...
T Consensus       247 ~Ia-~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~  285 (706)
T KOG2303|consen  247 MIA-MNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASI  285 (706)
T ss_pred             hee-ecceeeeecccccccceEEEEEEecHHHHHHHHhhh
Confidence            765 5799999885   24568999999999999999544

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=81.20  E-value=9.7  Score=29.81  Aligned_cols=65  Identities=14%  Similarity=0.213  Sum_probs=40.0

Q ss_pred             HHHHhCCCcEEEEeCCC--C---hh----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270            6 TALYGKGIEIYCAPTAD--S---RD----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT   70 (162)
Q Consensus         6 r~la~~Gaei~v~p~a~--~---~~----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~   70 (162)
                      ...+.+|++++|-|-.+  +   ..          .+...++..|.+++++++.-...-.                    
T Consensus        26 ~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~--------------------   85 (253)
T cd07583          26 EEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEK--------------------   85 (253)
T ss_pred             HHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEec--------------------
Confidence            44577899999998543  1   11          1234466778899999885432111                    


Q ss_pred             CCCccccceeEEECCCCceee
Q 031270           71 PDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        71 ~~~~~~~G~S~Iv~P~G~~la   91 (162)
                       ++..++-.+.+++|+|+++.
T Consensus        86 -~~~~~yNs~~~i~~~G~i~~  105 (253)
T cd07583          86 -EGGKLYNTAYVIDPDGELIA  105 (253)
T ss_pred             -CCCcEEEEEEEECCCCcEEE
Confidence             11124456678899997654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=81.04  E-value=9.6  Score=29.98  Aligned_cols=68  Identities=16%  Similarity=0.234  Sum_probs=41.2

Q ss_pred             HHHHHhCCCcEEEEeCCC--C--h-------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270            5 RTALYGKGIEIYCAPTAD--S--R-------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE   67 (162)
Q Consensus         5 ~r~la~~Gaei~v~p~a~--~--~-------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~   67 (162)
                      ....+.+|++|+|-|=.+  +  .             ..+...++..|.+++++++.-...-.+                
T Consensus        24 i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~----------------   87 (265)
T cd07572          24 IEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERD----------------   87 (265)
T ss_pred             HHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeecccc----------------
Confidence            345677899999998443  1  0             022334567788999998864321111                


Q ss_pred             CCCCCCccccceeEEECCCCceee
Q 031270           68 DLTPDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        68 ~~~~~~~~~~G~S~Iv~P~G~~la   91 (162)
                         .+...++-.+.+++|+|+++.
T Consensus        88 ---~~~~~~yNs~~~i~~~G~i~~  108 (265)
T cd07572          88 ---DDDGKVYNTSLVFDPDGELVA  108 (265)
T ss_pred             ---CCCCcEEEEEEEECCCCeEEe
Confidence               001234566788999998753

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []

Probab=80.42  E-value=7.4  Score=28.78  Aligned_cols=64  Identities=17%  Similarity=0.246  Sum_probs=42.9

Q ss_pred             HHHHHhCCCcEEEEeCCCC--h---------------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCcc
Q 031270            5 RTALYGKGIEIYCAPTADS--R---------------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYV   61 (162)
Q Consensus         5 ~r~la~~Gaei~v~p~a~~--~---------------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~   61 (162)
                      .+..+.+|++|++.|-.+-  .                     ..+...++..|.+++++++.- ..-.+          
T Consensus        27 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G-~~~~~----------   95 (186)
T PF00795_consen   27 IEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAG-IPERD----------   95 (186)
T ss_dssp             HHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEE-EEEEE----------
T ss_pred             HHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccc-ccccc----------
Confidence            3456778999999985541  1                     122334677888999998877 32222          


Q ss_pred             ccCcccCCCCCCccccceeEEECCCCcee
Q 031270           62 FSGIEEDLTPDSVVCAGGSVIISPSGTVL   90 (162)
Q Consensus        62 ~~~~e~~~~~~~~~~~G~S~Iv~P~G~~l   90 (162)
                                 ...++-.+.+++|+|+++
T Consensus        96 -----------~~~~~N~~~~~~~~g~~~  113 (186)
T PF00795_consen   96 -----------DGGLYNSAVVIDPDGEIL  113 (186)
T ss_dssp             -----------TTEEEEEEEEEETTSEEE
T ss_pred             -----------cccccceeEEEEeeeccc
Confidence                       123557788899999887

They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....

>PLN02798 nitrilase

Probab=80.40  E-value=12  Score=30.27  Aligned_cols=68  Identities=16%  Similarity=0.177  Sum_probs=40.8

Q ss_pred             HHHHHhCCCcEEEEeCCC---Ch--h-----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270            5 RTALYGKGIEIYCAPTAD---SR--D-----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED   68 (162)
Q Consensus         5 ~r~la~~Gaei~v~p~a~---~~--~-----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~   68 (162)
                      .+..+.+|++|+|-|=.+   +.  .           .+...++..|.+++++++.-...-..                 
T Consensus        35 i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~-----------------   97 (286)
T PLN02798         35 AKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKG-----------------   97 (286)
T ss_pred             HHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEccc-----------------
Confidence            345667999999998642   11  1           13344567788999998742111000                 


Q ss_pred             CCCCCccccceeEEECCCCceee
Q 031270           69 LTPDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        69 ~~~~~~~~~G~S~Iv~P~G~~la   91 (162)
                        .++...+-.+.+++|+|+++.
T Consensus        98 --~~~~~~yNs~~vi~~~G~i~~  118 (286)
T PLN02798         98 --PDDSHLYNTHVLIDDSGEIRS  118 (286)
T ss_pred             --CCCCceEEEEEEECCCCCEEE
Confidence              011234566788999998764

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=80.33  E-value=11  Score=29.56  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             HHHHHhCCCcEEEEeCCC----Ch-------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270            5 RTALYGKGIEIYCAPTAD----SR-------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE   67 (162)
Q Consensus         5 ~r~la~~Gaei~v~p~a~----~~-------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~   67 (162)
                      ...++.+|++++|-|=.+    ..             ..|...++..|.+++++++.-... ..                
T Consensus        23 i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~----------------   85 (255)
T cd07581          23 LAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMFE-PA----------------   85 (255)
T ss_pred             HHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEeee-eC----------------
Confidence            445678999999998443    11             123444677888999998874221 11                


Q ss_pred             CCCCCCccccceeEEECCCCceee
Q 031270           68 DLTPDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        68 ~~~~~~~~~~G~S~Iv~P~G~~la   91 (162)
                         .++ ..+-.+.+++|+|+++.
T Consensus        86 ---~~~-~~yNs~~~i~~~G~i~~  105 (255)
T cd07581          86 ---GDG-RVYNTLVVVGPDGEIIA  105 (255)
T ss_pred             ---CCC-cEEEeEEEECCCCcEEE
Confidence               011 24566778889888654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=80.20  E-value=10  Score=30.09  Aligned_cols=65  Identities=15%  Similarity=0.128  Sum_probs=39.3

Q ss_pred             HHHHHhCCCcEEEEeCCC--Ch------------------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccC
Q 031270            5 RTALYGKGIEIYCAPTAD--SR------------------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSG   64 (162)
Q Consensus         5 ~r~la~~Gaei~v~p~a~--~~------------------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~   64 (162)
                      .+..+.+|++|+|-|=.+  +.                  ..+...++..|.+++++++..-.  ..             
T Consensus        25 i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~~--~~-------------   89 (279)
T TIGR03381        25 VREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSFF--EK-------------   89 (279)
T ss_pred             HHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEeee--ec-------------
Confidence            345677999999998532  10                  01233456788899999875211  11             


Q ss_pred             cccCCCCCCccccceeEEECCCCceee
Q 031270           65 IEEDLTPDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        65 ~e~~~~~~~~~~~G~S~Iv~P~G~~la   91 (162)
                             ++..++-..++++|+|+++.
T Consensus        90 -------~~~~~yNs~~~i~~~G~i~~  109 (279)
T TIGR03381        90 -------AGNAYYNSLAMIDADGSVLG  109 (279)
T ss_pred             -------CCCceEEeEEEECCCCCEEE
Confidence                   11124455678889998763

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	6e-12
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	2e-11
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	2e-10
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	4e-10
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	4e-10
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	3e-09
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	5e-08
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	4e-07
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	4e-06
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	5e-05
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	7e-05

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262

 Score = 60.7 bits (148), Expect = 6e-12
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 20/104 (19%)

Query: 11  KGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT 70
           KG ++   P          +M   ALE   + ++A++                G E  L 
Sbjct: 161 KGADVIAHPANLVMPYAPRAMPIRALENKVYTVTADR---------------VGEERGLK 205

Query: 71  PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREK 114
                  G S+I SP   VL+  +   E +  A++DL  +  ++
Sbjct: 206 -----FIGKSLIASPKAEVLSMASETEEEVGVAEIDLSLVRNKR 244

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 24/105 (22%)

Query: 11  KGIEIYCAPTA---DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE 67
           +G ++   PTA   D   V    +   A+E G  +  AN                 G E 
Sbjct: 180 RGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANH---------------CGPEG 224

Query: 68  DLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAR 112
            L        GGSV++ P+G  L         L+  DL       
Sbjct: 225 GLV-----FDGGSVVVGPAGQPLGELG-VEPGLLVVDLPDQSQDA 263

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 25/112 (22%)

Query: 11  KGIEIYCAPTA---DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE 67
           KG  +Y   +       D W  +    A     + +S N                +G + 
Sbjct: 181 KGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNL---------------AGYDN 225

Query: 68  DLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEI--AREKFAF 117
                     G   I +  GT L   +     +++ ++       AR  +  
Sbjct: 226 VFY-----YFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGL 272

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 33/131 (25%)

Query: 11  KGIEIYCAPTA-------------DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPP 57
           +G EI C                  +      SM   + + G +  +A +          
Sbjct: 186 RGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKA--------- 236

Query: 58  PEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAF 117
                 G+EE+         G S I++P+G ++A      + +I+A +DL      +   
Sbjct: 237 ------GMEENCM-----LLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHI 285

Query: 118 DVVGHYSRPEV 128
                + +P+ 
Sbjct: 286 FNFKQHRQPQH 296

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 11  KGIEIYCAPTA----DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIE 66
            G EI   P+A     S  +W     + A+    F +  N    R      P    SG  
Sbjct: 249 NGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPIN----RVGTEQFPNEYTSGDG 304

Query: 67  EDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAR 112
                +     G S + +P G+     + + + L+  +LDL    +
Sbjct: 305 NKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQ 350

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 23/114 (20%)

Query: 5   RTALYGKGIEIYCAPTADSR-DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFS 63
           R       ++++ A    +R   W+  +   A+E  CFV + N+                
Sbjct: 160 RPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNR---------------V 204

Query: 64  GIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIA--REKF 115
           G++     + +  AG S +I   G        E E +++  +    +A  R +F
Sbjct: 205 GVD----GNQLHYAGDSAVIDFLGQPQVEIR-EQEQVVTTTISAAALAEHRARF 253

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 22/114 (19%), Positives = 30/114 (26%), Gaps = 23/114 (20%)

Query: 2   PLLRTALYGKGIEIYCAPTA---DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPP 58
           P +      KG E+          ++D        +A    C+V  AN       Y    
Sbjct: 172 PEIWRDCAMKGAELIVRCQGYMYPAKDQQVMMAKAMAWANNCYVAVANAAGFDGVYS--- 228

Query: 59  EYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAR 112
                              G S II   G  L     E   +  A L L +I  
Sbjct: 229 -----------------YFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRD 265

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 23/83 (27%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPN 94
           A+E   FV+  N                +G + +        AG S++I+P+G ++   N
Sbjct: 208 AIENNMFVIGTNS---------------TGFDGNTE-----YAGHSIVINPNGDLVGELN 247

Query: 95  YEGEALISADLDLGEIA--REKF 115
            E   +++ DL+L E+   RE  
Sbjct: 248 -ESADILTVDLNLNEVEQQRENI 269

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 20/78 (25%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPN 94
           A++   +V +A+   R                      S V  G S ++ P G VL    
Sbjct: 196 AVDNQVYVATASP-ARD------------------DKASYVAWGHSTVVDPWGQVLTKAG 236

Query: 95  YEGEALISADLDLGEIAR 112
              E ++ +D+DL ++A 
Sbjct: 237 -TEETILYSDIDLKKLAE 253

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 20/78 (25%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPN 94
           A++   +V+  +   R                      S    G S+++ P G ++A   
Sbjct: 212 AVDNQVYVMLCSP-ARNL------------------QSSYHAYGHSIVVDPRGKIVAEAG 252

Query: 95  YEGEALISADLDLGEIAR 112
            EGE +I A+LD   I  
Sbjct: 253 -EGEEIIYAELDPEVIES 269

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 20/78 (25%)

Query: 35  ALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPN 94
           A+E  C+V++A Q                              G S+++ P G V+A  +
Sbjct: 212 AIENQCYVVAAAQ-TGA------------------HNPKRQSYGHSMVVDPWGAVVAQCS 252

Query: 95  YEGEALISADLDLGEIAR 112
            E   +  A++DL  +  
Sbjct: 253 -ERVDMCFAEIDLSYVDT 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	99.92
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	99.92
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	99.92
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	99.91
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	99.91
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.9
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	99.89
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	99.89
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	99.89
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	99.85
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	99.83
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	99.69
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.68
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	99.62
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	99.54
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	86.98
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	85.99
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	80.85

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=99.92  E-value=2.8e-25  Score=179.06  Aligned_cols=108  Identities=20%  Similarity=0.322  Sum_probs=100.4

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .|++.|.++.+|++|+++|++|+   ..+|+.++++||+||+||||+||++|.+                    ++..|+
T Consensus       171 fpe~~r~~~~~Gadli~~psa~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~--------------------~~~~~~  230 (281)
T 3p8k_A          171 FPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFD--------------------GNTEYA  230 (281)
T ss_dssp             CTHHHHHHHHTTCCEEEEEECCBGGGHHHHHHHHHHHHHHHTSEEEEEECEEEC--------------------SSCEEE
T ss_pred             CcHHHHHHHHCCCCEEEECCCCCCccHHHHHHHHHHHHHHcCCEEEEEccCcCC--------------------CCcEEe
Confidence            48999999999999999999996   4689999999999999999999999985                    357899


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS  130 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~  130 (162)
                      |+|+|++|+|+++++ ..++|+++++|||++.+++.|..++++.| ||||+|+
T Consensus       231 G~S~ii~p~G~vl~~-~~~~e~~l~~~id~~~~~~~R~~~p~~~~-rr~~lY~  281 (281)
T 3p8k_A          231 GHSIVINPNGDLVGE-LNESADILTVDLNLNEVEQQRENIPVFKS-IKLDLYK  281 (281)
T ss_dssp             CCCEEECTTSCEEEE-CCSSCEEEEEEEETHHHHHHHHHSCGGGT-CCTTTCC
T ss_pred             eeEEEECCCCCEEEe-cCCCCeEEEEEEcHHHHHHHHHhCcchhh-cChhhcC
Confidence            999999999999999 56899999999999999999999999998 9999995

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=99.92  E-value=2.4e-24  Score=172.63  Aligned_cols=113  Identities=20%  Similarity=0.334  Sum_probs=102.3

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|++.|.++.+|++|+++|++|+    ..+|..++++||+||+|||+.||++|.++                   .+..|
T Consensus       158 fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~-------------------~~~~~  218 (276)
T 2w1v_A          158 FAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDK-------------------ASYVA  218 (276)
T ss_dssp             CHHHHHHHHHTTEEEEEEECCCCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTT-------------------SSSCC
T ss_pred             cHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHHHHcCcEEEEecccccCC-------------------CCcee
Confidence            48999999999999999999985    36799999999999999999999999752                   35678


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeec
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVR  134 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~  134 (162)
                      .|+|+|++|+|++++++.. +|++++++||++.+++.|..+|+++| +|||+|.+..+
T Consensus       219 ~G~S~ii~p~G~v~~~~~~-~e~~l~~~id~~~~~~~R~~~~~~~~-~r~~~y~~~~~  274 (276)
T 2w1v_A          219 WGHSTVVDPWGQVLTKAGT-EETILYSDIDLKKLAEIRQQIPILKQ-KRADLYTVESK  274 (276)
T ss_dssp             CCCCEEECTTSCEEEECCS-SSEEEEEEEEHHHHHHHHHHSCGGGS-CCTTTEEEEEC
T ss_pred             eeEeEEECCCCCEeEEcCC-CCeEEEEEEcHHHHHHHHHhCChhHh-CCHHHhhcccc
Confidence            9999999999999999875 99999999999999999999999999 79999997643

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=99.92  E-value=1.2e-25  Score=179.04  Aligned_cols=109  Identities=22%  Similarity=0.269  Sum_probs=101.1

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270            1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS   80 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S   80 (162)
                      .|++.|.++.+|++|+++|++|+.++|..++++||+||+|||++||++|.+                    ++..|.|+|
T Consensus       151 fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~--------------------~~~~~~G~S  210 (262)
T 3ivz_A          151 FPESARTLALKGADVIAHPANLVMPYAPRAMPIRALENKVYTVTADRVGEE--------------------RGLKFIGKS  210 (262)
T ss_dssp             SHHHHHHHHHTTCSEEEEEECCCSSCHHHHHHHHHHHHTCEEEEEECCSEE--------------------TTEECCCCC
T ss_pred             chHHHHHHHHCCCCEEEEcCCCCchHHHHHHHHHHHhcCcEEEEECCCCcC--------------------CCceEeeeE
Confidence            489999999999999999999987799999999999999999999999985                    356799999


Q ss_pred             EEECCCCceeecCCCCCccEEEEEechHHHHHHHhh--CCcCCCCCCcccee
Q 031270           81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA--FDVVGHYSRPEVLS  130 (162)
Q Consensus        81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~--~~~~~~y~Rpd~~~  130 (162)
                      +|++|+|+++++++.++++++++|||++.+++.|..  ++++.| ||||+|.
T Consensus       211 ~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~R~~~~~p~l~~-rr~~lY~  261 (262)
T 3ivz_A          211 LIASPKAEVLSMASETEEEVGVAEIDLSLVRNKRINDLNDIFKD-RREEYYF  261 (262)
T ss_dssp             EEECTTSCEEEECCSSCCEEEEEECCHHHHHCCEEETTEEHHHH-CCGGGSC
T ss_pred             EEECCCCCEeecCCCCCceEEEEEEcHHHHHHHhhcccCchhhh-cCHhhhC
Confidence            999999999999987788899999999999999987  899988 9999996

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=99.91  E-value=4.4e-24  Score=172.06  Aligned_cols=111  Identities=25%  Similarity=0.304  Sum_probs=96.2

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|++.|.++.+|++|+++|++|+    ..+|..++++||+||+|||+.||++|.++                   ++..|
T Consensus       174 fpe~~r~l~~~Ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~-------------------~~~~~  234 (291)
T 1f89_A          174 FPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQ-------------------SSYHA  234 (291)
T ss_dssp             CHHHHHHHHHTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECCCCCTT-------------------SSSCB
T ss_pred             chHHHHHHHhhCCCEEEECCcCCCCCcHHHHHHHHHHHHHHcCCEEEEecCccCCC-------------------CCCee
Confidence            48999999999999999999985    36799999999999999999999999641                   45789


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeee
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLV  132 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~  132 (162)
                      +|+|+|++|+|+++++++ .+|++++++||++.+++.|..+|+++| +|||+|..+
T Consensus       235 ~G~S~ii~p~G~vl~~~~-~~e~~l~~~id~~~~~~~R~~~~~~~~-~r~~~y~~~  288 (291)
T 1f89_A          235 YGHSIVVDPRGKIVAEAG-EGEEIIYAELDPEVIESFRQAVPLTKQ-RRFDVYSDV  288 (291)
T ss_dssp             CCCCEEECTTSCEEEECC-SSSEEEEEEECHHHHHHHHHHSCCCCC-CCC------
T ss_pred             eeEEEEECCCCCEEEecC-CCCeEEEEEECHHHHHHHHHhCChhHh-CChhhhhhh
Confidence            999999999999999986 489999999999999999999999998 899999865

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=99.91  E-value=3.3e-25  Score=178.82  Aligned_cols=109  Identities=24%  Similarity=0.270  Sum_probs=91.5

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .|++.|.++.+|++|+++|++|+   ..+|..++++||+||++||+.||++|.+                    ++..|.
T Consensus       170 fpe~~r~l~~~Ga~li~~ps~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~--------------------~~~~~~  229 (283)
T 3hkx_A          170 FPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPE--------------------GGLVFD  229 (283)
T ss_dssp             SHHHHHHHHHTTCSEEEEECCCBSCCTHHHHTHHHHHHHHHTCEEEEECBEEEE--------------------TTEEEE
T ss_pred             CHHHHHHHHHCCCCEEEECCCCCCcccHHHHHHHHHHHHHhCCEEEEEccccCC--------------------CCeEEe
Confidence            48999999999999999999984   3689999999999999999999999985                    467899


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceee
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSL  131 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~  131 (162)
                      |+|+|++|+|+++++++ ++|+++++|||++.+++.|..++++.| ||||+|..
T Consensus       230 G~S~ii~p~G~vl~~~~-~~e~~l~a~id~~~~~~~R~~~~~~~~-rr~~ly~~  281 (283)
T 3hkx_A          230 GGSVVVGPAGQPLGELG-VEPGLLVVDLPDQSQDAGSDSADYLQD-RRAELHRN  281 (283)
T ss_dssp             CCCEEECTTSCEEEECC-SSCEEEEEEEEC----------CHHHH-SCHHHHHH
T ss_pred             eEEEEECCCCCEEEecC-CCCeEEEEEECHHHHHHHHHhCChhHh-cCHhhhhh
Confidence            99999999999999997 899999999999999999999999998 99999974

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=99.90  E-value=5.4e-24  Score=180.90  Aligned_cols=115  Identities=23%  Similarity=0.360  Sum_probs=105.1

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|++.|.++.+|+||+++|++|+    ..+|..++++||+||+||||+||++|.++                   ++..|
T Consensus       174 fpe~~r~l~~~Ga~il~~psa~~~~~~~~~~~~~~~arA~En~~~vv~an~~G~~~-------------------~~~~~  234 (440)
T 1ems_A          174 FPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHN-------------------PKRQS  234 (440)
T ss_dssp             CHHHHHHHHHTTCSEEECCBCCCHHHHHHHHHHHHHHHHHHHTCEEEECBBEEEEE-------------------TTEEE
T ss_pred             ChHHHHHHHHcCCcEEEECCcCCCCCcHHHHHHHHHHHHHhcCcEEEEecccccCC-------------------CCcee
Confidence            48999999999999999999995    35799999999999999999999999752                   34679


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecCc
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRDH  136 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~~  136 (162)
                      +|+|+|+||+|++++++. .+|++++++||++.+.+.|..+|+++| ||||+|.+.+++.
T Consensus       235 ~G~S~ii~P~G~vla~~~-~~e~il~a~idl~~~~~~R~~~~~~~~-rr~~~y~~~~~~~  292 (440)
T 1ems_A          235 YGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFSH-RRSDLYTLHINEK  292 (440)
T ss_dssp             ECCCEEECTTSCEEEECC-SSSCEEEEEEEHHHHHHHHHHSCGGGS-CCTTTCCCCCCCC
T ss_pred             eeeeEEECCCCCeeccCC-CCCcEEEEEeCHHHHHHHHHhCChhhh-cChhhhhcccccc
Confidence            999999999999999996 689999999999999999999999998 9999999888754

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=99.89  E-value=3.6e-24  Score=181.01  Aligned_cols=130  Identities=18%  Similarity=0.243  Sum_probs=102.1

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|+++|.++.+||+|+++|++|.    ..+|..++++||+||+||||+||++|.+. .+....   .+.......+...|
T Consensus       239 fPe~~r~la~~GAdill~psa~~~~~~~~~w~~l~raRAiEn~~~Vv~aN~vG~~~-~~~~~~---~~~g~~~~~~~~~f  314 (405)
T 2vhh_A          239 HPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQ-FPNEYT---SGDGNKAHKEFGPF  314 (405)
T ss_dssp             CHHHHHHHHHTTCSEEEEEECCBCTTTHHHHHHHHHHHHHHHTSEEEEEECEECCC-CC--------------------E
T ss_pred             ChHHHHHHHHcCCCEEEEcccCCCCCCHHHHHHHHHHHHHHcCceEEEeccccccc-cccccc---cccCccccccCcee
Confidence            48999999999999999999983    46899999999999999999999999752 110000   00000000123468


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeecC
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVRD  135 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~~  135 (162)
                      +|+|+|++|+|++++++..++|++++++||++.+++.|..++++.+ ||||+|...+.+
T Consensus       315 ~G~S~IidP~G~vla~~~~~~e~il~aeiDl~~~~~~R~~~p~~~~-rR~~lY~~~~~~  372 (405)
T 2vhh_A          315 YGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMT-QRVPLYAESFKK  372 (405)
T ss_dssp             ECCCCCBCTTSCBCCCCCSSSCEEEEEEEETTHHHHHHHHHCTTTT-CCHHHHHHHHHH
T ss_pred             ccccceECCCCCEeeccCCCCCeEEEEEECHHHHHHHHHhCCchhh-cCHHHHHHHHHH
Confidence            9999999999999999876789999999999999999999999998 999999976654

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=99.89  E-value=9e-24  Score=170.84  Aligned_cols=112  Identities=21%  Similarity=0.302  Sum_probs=98.7

Q ss_pred             CcHHHHHHHhCCCcEEEEeC---CCC----------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPT---ADS----------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE   67 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~---a~~----------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~   67 (162)
                      .|++.|.++.+|++|+++|+   +++          ..+|+.++++||+||++||+.||++|.+                
T Consensus       176 fpe~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~----------------  239 (303)
T 1uf5_A          176 WPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGME----------------  239 (303)
T ss_dssp             CHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEEEBCEEE----------------
T ss_pred             CHHHHHHHHHCCCCEEEEecCCccccccccCCccccHHHHHHHHHhhhhcCCcEEEEECccccc----------------
Confidence            48999999999999996653   332          2468889999999999999999999975                


Q ss_pred             CCCCCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhh-CCcCCCCCCccceeeee
Q 031270           68 DLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFA-FDVVGHYSRPEVLSLVV  133 (162)
Q Consensus        68 ~~~~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~-~~~~~~y~Rpd~~~~~~  133 (162)
                          ++..|.|+|+|++|+|+++++++.++|++++++||++.+++.|.. ++++.| ||||+|.+.+
T Consensus       240 ----~~~~~~G~S~ii~p~G~vl~~~~~~~~~~l~~~id~~~~~~~R~~~~~~~~~-rr~~~y~~~~  301 (303)
T 1uf5_A          240 ----ENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQH-RQPQHYGLIA  301 (303)
T ss_dssp             ----TTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCHHHH-CCGGGCGGGG
T ss_pred             ----CCccccceeEEECCCCCEeccCCCCCCcEEEEEEcHHHHHHHHhhcccchhc-cCHHHHHHhh
Confidence                356799999999999999999876788999999999999999999 999998 8999998654

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.4e-23  Score=167.10  Aligned_cols=108  Identities=18%  Similarity=0.269  Sum_probs=96.6

Q ss_pred             cHHHHHHH---hC---CCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCC
Q 031270            2 PLLRTALY---GK---GIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPD   72 (162)
Q Consensus         2 P~~~r~la---~~---Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~   72 (162)
                      |++.|.++   .+   |++++++|++|+   ..+|+.++++||+||+||||.||++|.+.                   +
T Consensus       149 pe~~r~~~~~~~~~~~ga~~i~~~s~w~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~-------------------~  209 (266)
T 2e11_A          149 PVFCRNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRVGVDG-------------------N  209 (266)
T ss_dssp             TTTTCCCBSSSSTTSBSCSEEEEEECCCGGGHHHHHHHHHHHHHHTTSEEEEEECEEECT-------------------T
T ss_pred             HHHHHHHHhhhhccCCCCcEEEEeCCCCCCchHHHHHHHHHHHHhcCcEEEEEcCCcCCC-------------------C
Confidence            66777654   54   999999999995   36799999999999999999999999752                   3


Q ss_pred             CccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCcccee
Q 031270           73 SVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLS  130 (162)
Q Consensus        73 ~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~  130 (162)
                      +..|.|+|+|++|+|+++++++ ++|++++++||++.+++.|..+|++.| ||||+|.
T Consensus       210 ~~~~~G~S~ii~p~G~v~~~~~-~~e~~l~~~id~~~~~~~R~~~~~~~~-rr~~~y~  265 (266)
T 2e11_A          210 QLHYAGDSAVIDFLGQPQVEIR-EQEQVVTTTISAAALAEHRARFPAMLD-GDSFVLG  265 (266)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEE-SSCEEEEEEECHHHHHHHHHHSCGGGG-CCCEEEC
T ss_pred             CceEeeeEEEECCCCceeeecC-CCCeEEEEEEcHHHHHHHHHhCChhhh-cChhhhc
Confidence            4678999999999999999997 899999999999999999999999998 9999986

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=99.85  E-value=3.7e-21  Score=158.60  Aligned_cols=102  Identities=16%  Similarity=0.187  Sum_probs=93.1

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .||+.|.++.+||||+++|++|.   ..+|..++++||+||+|||+.||++|.+                    +...|.
T Consensus       171 fpe~~r~~~~~Gadlil~psaw~~~~~~~~~~~~~arA~En~~~vv~an~~G~~--------------------~~~~~~  230 (334)
T 2dyu_A          171 IPELAREAAYKGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGYD--------------------NVFYYF  230 (334)
T ss_dssp             CHHHHHHHHHTTCSEEEEEESSCTTSHHHHHHHHHHHHHHHTCEEEEEECSBSS--------------------SSCCCC
T ss_pred             chHHHHHHHHcCCCEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEECCCcCC--------------------CCeeee
Confidence            48999999999999999999885   4689999999999999999999999975                    356789


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH  122 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~  122 (162)
                      |+|+|+||+|++++++..++|++++++||++.+++.|..+++.+|
T Consensus       231 G~S~Iidp~G~vla~~~~~~e~il~a~idl~~~~~~R~~~~~~~~  275 (334)
T 2dyu_A          231 GEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENN  275 (334)
T ss_dssp             CEEEEECTTSCEEEECCCCTTCEEEEEECHHHHHHHHHHCSTTCH
T ss_pred             eEEEEECCCCCEeeecCCCCCeEEEEEEcHHHHHHHHhhCchhhh
Confidence            999999999999999976789999999999999999999988765

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=99.83  E-value=1.3e-20  Score=155.89  Aligned_cols=101  Identities=21%  Similarity=0.160  Sum_probs=92.0

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC---hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS---RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCA   77 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~---~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~   77 (162)
                      .|++.|.++.+||||+++|++|+   ..+|..++++||+||+||||+||++|.+                    +...|+
T Consensus       171 fpe~~r~l~~~Gadlll~psa~~~~~~~~~~~l~~arA~En~~~vv~an~~G~~--------------------~~~~~~  230 (341)
T 2uxy_A          171 YPEIWRDCAMKGAELIVRCQGYMYPAKDQQVMMAKAMAWANNCYVAVANAAGFD--------------------GVYSYF  230 (341)
T ss_dssp             SHHHHHHHHHTTCSEEEEEECCBTTCHHHHHHHHHHHHHHHTCEEEEEECEEEC--------------------SSCEEE
T ss_pred             CcHHHHHHHHcCCCEEEEcCCCCCCcHHHHHHHHHHHHHhCCcEEEEECCCCCC--------------------CCceee
Confidence            48999999999999999999984   4789999999999999999999999975                    356899


Q ss_pred             ceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCC
Q 031270           78 GGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVG  121 (162)
Q Consensus        78 G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~  121 (162)
                      |+|+|+||+|+++++++.++|++++++||++.+++.|..++..+
T Consensus       231 G~S~Iidp~G~vla~~~~~~e~il~a~id~~~~~~~R~~~~~~~  274 (341)
T 2uxy_A          231 GHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARANDQSQN  274 (341)
T ss_dssp             CCCEEECTTSCEEEECCSCTTCEEEEEEEHHHHHHHHHHCCTTC
T ss_pred             eEEEEECCCCCEEEECCCCCCEEEEEEEcHHHHHHHHhhcchhh
Confidence            99999999999999997778999999999999999999888754

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=99.69  E-value=3.8e-17  Score=143.20  Aligned_cols=88  Identities=17%  Similarity=0.175  Sum_probs=81.2

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV   75 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~   75 (162)
                      .|+..|.++.+||+|+++|++++     ..+|..++++||+||+||||++|++|.+                    ++..
T Consensus       174 fpe~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~vvy~N~vG~~--------------------~~~~  233 (565)
T 4f4h_A          174 HASAAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLPMVYVNLVGGQ--------------------DELV  233 (565)
T ss_dssp             SSHHHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCCEEEEECEEEE--------------------TTEE
T ss_pred             ccchhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCcEEEeeeecCC--------------------CCeE
Confidence            48999999999999999999984     3689999999999999999999999986                    4678


Q ss_pred             ccceeEEECCCCceeecCCCCCccEEEEEechH
Q 031270           76 CAGGSVIISPSGTVLAGPNYEGEALISADLDLG  108 (162)
Q Consensus        76 ~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~  108 (162)
                      |+|+|+|++|+|+++++++.++|+++++|+|..
T Consensus       234 f~G~S~iidp~G~vla~~~~f~e~~~~~d~d~~  266 (565)
T 4f4h_A          234 FDGGSFVLDGAGELVAKMPQFEEGNAIVEFDGA  266 (565)
T ss_dssp             EEBCCEEECTTSCEEEECCBSCCEEEEEEEETT
T ss_pred             EECCcceecCCCcEEEEccccccceEEEEeccc
Confidence            999999999999999999989999999999854

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=99.68  E-value=3.2e-17  Score=144.17  Aligned_cols=89  Identities=22%  Similarity=0.246  Sum_probs=81.9

Q ss_pred             cHHHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            2 PLLRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         2 P~~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      |+..+.|+.+||+|+++|++|+     ..+|..++++||+||+||||+||++|.+                    +...|
T Consensus       170 pe~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~vv~an~~G~~--------------------~~~~f  229 (590)
T 3n05_A          170 GGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ--------------------DELVF  229 (590)
T ss_dssp             TSHHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSEEEEEECEEEE--------------------TTEEE
T ss_pred             ChHHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEecccCC--------------------CCeEE
Confidence            7899999999999999999984     3679999999999999999999999985                    46789


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHH
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEI  110 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i  110 (162)
                      .|+|+|+||+|+++++++.++|+++++|||++.+
T Consensus       230 ~G~S~iidp~G~vla~~~~~~e~~~~~didl~~~  263 (590)
T 3n05_A          230 DGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAA  263 (590)
T ss_dssp             EBCCEEECTTSCEEEECCBTSCEEEEEEEEECCC
T ss_pred             eCcEEEECCCCcEEEEcCCCCCcEEEEEEccccc
Confidence            9999999999999999987899999999998876

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=99.62  E-value=3.2e-16  Score=138.94  Aligned_cols=97  Identities=15%  Similarity=0.194  Sum_probs=70.9

Q ss_pred             cH-HHHHHHhCCCcEEEEeCCCC-----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcc
Q 031270            2 PL-LRTALYGKGIEIYCAPTADS-----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVV   75 (162)
Q Consensus         2 P~-~~r~la~~Gaei~v~p~a~~-----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~   75 (162)
                      |+ ..+.++.+||+|+++|++|+     ..+|..++++||+||+||||+||++|.+.                   +...
T Consensus       171 Pe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~-------------------~~~~  231 (634)
T 3ilv_A          171 TDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEA-------------------GRMI  231 (634)
T ss_dssp             -------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESS-------------------SSCE
T ss_pred             ChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCC-------------------CceE
Confidence            66 88999999999999999984     36899999999999999999999999851                   4578


Q ss_pred             ccceeEEECCCCceeecCCC---CCccEEEEEechHHHHHHHhhCC
Q 031270           76 CAGGSVIISPSGTVLAGPNY---EGEALISADLDLGEIAREKFAFD  118 (162)
Q Consensus        76 ~~G~S~Iv~P~G~~la~~~~---~~E~iv~adiDl~~i~~~R~~~~  118 (162)
                      |.|+|+|+ |+|+++++++.   .++++++++||++.++..|..++
T Consensus       232 f~G~S~I~-p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~~  276 (634)
T 3ilv_A          232 YDGEVLIA-HKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLT  276 (634)
T ss_dssp             EECCEEEE-ETTEEEEECCSSCSSSEEEEEEEEEC-----------
T ss_pred             EcceEEEE-cCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcCC
Confidence            99999888 99999999874   34689999999999988887654

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=99.54  E-value=7.6e-15  Score=131.08  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=84.0

Q ss_pred             cHHH-HHHHhCCCcEEEEeCCCC----h-hhHHHHHHHHhHh-cCceEEEcCcccccCCCCCCCCccccCcccCCCCCCc
Q 031270            2 PLLR-TALYGKGIEIYCAPTADS----R-DVWQASMTHIALE-GGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSV   74 (162)
Q Consensus         2 P~~~-r~la~~Gaei~v~p~a~~----~-~~w~~~~~arA~E-n~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~   74 (162)
                      |+.. +.++.+||+|+++|++|+    . ..|..+++++|.+ +++||+++|+.|.+                   .+..
T Consensus       183 Pe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~~~~G~~-------------------~~~l  243 (680)
T 3sdb_A          183 PMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGES-------------------TTDL  243 (680)
T ss_dssp             SSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTTSC-------------------CSSC
T ss_pred             cccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEECCcccC-------------------CCCe
Confidence            6774 899999999999999984    2 3456777877666 57888888877763                   2467


Q ss_pred             cccceeEEECCCCceeecCCCC--CccEEEEEechHHHHHHHhhCCcCCC
Q 031270           75 VCAGGSVIISPSGTVLAGPNYE--GEALISADLDLGEIAREKFAFDVVGH  122 (162)
Q Consensus        75 ~~~G~S~Iv~P~G~~la~~~~~--~E~iv~adiDl~~i~~~R~~~~~~~~  122 (162)
                      .|.|+|+|+ |+|+++++++.+  +|+++++|||++.+++.|..++++.+
T Consensus       244 ~f~G~S~I~-p~G~vla~~~~f~~~e~ll~adiDl~~l~~~R~~~~~~~~  292 (680)
T 3sdb_A          244 AWDGQTMIW-ENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDD  292 (680)
T ss_dssp             CCCCCEEEE-ETTEEEEECCSSCSSCEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             EEeccEEEE-cCCEEEEECCCCCCCCcEEEEEEcHHHHHHHHHhCCchhh
Confidence            899999999 999999999765  89999999999999999998888766

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=86.98  E-value=1.3  Score=34.46  Aligned_cols=65  Identities=9%  Similarity=0.044  Sum_probs=41.8

Q ss_pred             HHHHhCCCcEEEEeCCC--C--h-----------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270            6 TALYGKGIEIYCAPTAD--S--R-----------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT   70 (162)
Q Consensus         6 r~la~~Gaei~v~p~a~--~--~-----------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~   70 (162)
                      +..+.+|++|+|-|=.+  +  .           ..+...++..|.+++++++.-...-.+                   
T Consensus        47 ~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~G~~~~~~-------------------  107 (281)
T 3p8k_A           47 EKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIR-------------------  107 (281)
T ss_dssp             HHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEEEEEEEEE-------------------
T ss_pred             HHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEEeeeEEcc-------------------
Confidence            34556899999998554  1  1           223445677788999998754221111                   


Q ss_pred             CCCccccceeEEECCCCceee
Q 031270           71 PDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        71 ~~~~~~~G~S~Iv~P~G~~la   91 (162)
                        +..++-.+.+++|+|+++.
T Consensus       108 --~~~~yNs~~~i~~~G~i~~  126 (281)
T 3p8k_A          108 --NNQIFNTAFSVNKSGQLIN  126 (281)
T ss_dssp             --TTEEEEEEEEECTTSCEEE
T ss_pred             --CCcEEEEEEEEcCCCeEEE
Confidence              1134567889999998874

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=85.99  E-value=4.3  Score=31.54  Aligned_cols=66  Identities=14%  Similarity=0.085  Sum_probs=42.3

Q ss_pred             HHHHHhCCCcEEEEeCCC--C--hh------------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270            5 RTALYGKGIEIYCAPTAD--S--RD------------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED   68 (162)
Q Consensus         5 ~r~la~~Gaei~v~p~a~--~--~~------------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~   68 (162)
                      .+..+.+|++|+|-|=.+  +  ..            .+...++..|.+++++++.-... ..                 
T Consensus        46 i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~-----------------  107 (283)
T 3hkx_A           46 AARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPG-PE-----------------  107 (283)
T ss_dssp             HHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEEECCBC-SS-----------------
T ss_pred             HHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEEEEEEE-Ec-----------------
Confidence            345567899999998553  1  11            12334567788999998865321 10                 


Q ss_pred             CCCCCccccceeEEECCCCceee
Q 031270           69 LTPDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        69 ~~~~~~~~~G~S~Iv~P~G~~la   91 (162)
                        .++ .++-.+.+++|+|+++.
T Consensus       108 --~~~-~~yNs~~~i~~~G~i~~  127 (283)
T 3hkx_A          108 --GPE-QRGITAELADEHGEVLA  127 (283)
T ss_dssp             --CTT-TCCBEEEEECTTSCEEE
T ss_pred             --CCC-CEEEEEEEEcCCCcEEE
Confidence              012 34567889999998874

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=80.85  E-value=4.1  Score=31.34  Aligned_cols=65  Identities=12%  Similarity=0.196  Sum_probs=40.9

Q ss_pred             HHHHhCCCcEEEEeCCC--C--h-----------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCC
Q 031270            6 TALYGKGIEIYCAPTAD--S--R-----------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLT   70 (162)
Q Consensus         6 r~la~~Gaei~v~p~a~--~--~-----------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~   70 (162)
                      +..+.+|++|+|-|=.+  +  .           ..+...++..|.+++++++.-...-.+                   
T Consensus        29 ~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~-------------------   89 (276)
T 2w1v_A           29 REAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEED-------------------   89 (276)
T ss_dssp             HHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEECCCEEEEE-------------------
T ss_pred             HHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEEecceeecC-------------------
Confidence            34567899999998543  1  1           123445667788999998753221110                   


Q ss_pred             CCCccccceeEEECCCCceee
Q 031270           71 PDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        71 ~~~~~~~G~S~Iv~P~G~~la   91 (162)
                       ++ .++-.+.+++|+|+++.
T Consensus        90 -~~-~~yNs~~~i~~~G~i~~  108 (276)
T 2w1v_A           90 -AG-KLYNTCSVFGPDGSLLV  108 (276)
T ss_dssp             -TT-EEEEEEEEECTTSCEEE
T ss_pred             -CC-cEEEEEEEECCCCcEEE
Confidence             11 24566788999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1uf5a_	303	d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol	1e-12
d1f89a_	281	d.160.1.1 (A:) hypothetical protein yl85 {Baker's	3e-08
d1emsa2	271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	3e-07
d1j31a_	262	d.160.1.2 (A:) Hypothetical protein PH0642 {Archae	2e-06

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 62.0 bits (149), Expect = 1e-12
 Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 11  KGIEIYCAPTA-DSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDL 69
           +G EI C      + +       H+        + A  +          +          
Sbjct: 186 RGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGM------- 238

Query: 70  TPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVL 129
             ++ +  G S I++P+G ++A      + +I+A +DL      +        + +P+  
Sbjct: 239 -EENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHY 297

Query: 130 SLVV 133
            L+ 
Sbjct: 298 GLIA 301

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 3e-08
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 71  PDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEI--AREKFAF 117
             S    G S+++ P G ++A    EGE +I A+LD   I   R+    
Sbjct: 228 QSSYHAYGHSIVVDPRGKIVAEAG-EGEEIIYAELDPEVIESFRQAVPL 275

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.3 bits (108), Expect = 3e-07
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 16/122 (13%)

Query: 1   MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 60
            P L      +G ++   P+A + +   A      L               +     P+ 
Sbjct: 165 FPELSLWNRKRGAQLLSFPSAFTLNTGLA-HWETLLRARAIENQCYVVAAAQTGAHNPKR 223

Query: 61  VFSGIEEDLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVV 120
                            G S+++ P G V+A  + E   +  A++DL  +   +    V 
Sbjct: 224 QS--------------YGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVF 268

Query: 121 GH 122
            H
Sbjct: 269 SH 270

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 70  TPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYS--RPE 127
               +   G S+I SP   VL+  +   E +   ++DL  +AR K   D+   +   R E
Sbjct: 200 EERGLKFIGKSLIASPKAEVLSIASETEEEIGVVEIDL-NLARNKRLNDMNDIFKDRREE 258

Query: 128 V 128
            
Sbjct: 259 Y 259

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	99.92
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	99.92
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	99.86
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	99.83
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	85.73
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	85.62
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	85.1

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=99.92  E-value=2.8e-26  Score=183.47  Aligned_cols=114  Identities=18%  Similarity=0.234  Sum_probs=102.7

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC-------------hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS-------------RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEE   67 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~-------------~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~   67 (162)
                      +|++.|.++.+||+|+++|++++             ..+|...+++||+||++||+++|++|.+                
T Consensus       176 ~pe~~~~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~g~~----------------  239 (303)
T d1uf5a_         176 WPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGME----------------  239 (303)
T ss_dssp             CHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEEEBCEEE----------------
T ss_pred             hhHhhhhHhhCCCEEEEEeccccccCCcccccchhhcchhhhhhhhhhhcccceeeeccccccc----------------
Confidence            58999999999999999987752             1356677899999999999999999986                


Q ss_pred             CCCCCCccccceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCCccceeeeec
Q 031270           68 DLTPDSVVCAGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSRPEVLSLVVR  134 (162)
Q Consensus        68 ~~~~~~~~~~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~Rpd~~~~~~~  134 (162)
                          ++..|+|+|+|++|+|++++++..++|++++||||++.+++.|..++.+.+|||||+|.++++
T Consensus       240 ----~~~~~~G~S~I~~p~G~vla~~~~~~e~vl~a~idl~~~~~~R~~~~~~~~~rr~d~y~~~~~  302 (303)
T d1uf5a_         240 ----ENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAE  302 (303)
T ss_dssp             ----TTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCHHHHCCGGGCGGGGC
T ss_pred             ----cccccccCcEEEeCCCCEEEECCCCCCEEEEEEEcHHHHHHHHHhCCchhhcCChhhhhHhhc
Confidence                467899999999999999999987899999999999999999999999999999999998765

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=1.6e-25  Score=176.22  Aligned_cols=109  Identities=23%  Similarity=0.241  Sum_probs=100.6

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCChhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCcccccee
Q 031270            1 MPLLRTALYGKGIEIYCAPTADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVCAGGS   80 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~~G~S   80 (162)
                      +|+++|.++.+|++|+++|+++....|...+++||+||+|||+++|++|.+                    ++..|.|+|
T Consensus       151 ~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~--------------------~~~~~~G~S  210 (262)
T d1j31a_         151 FPESARTLALKGAEIIAHPANLVMPYAPRAMPIRALENRVYTITADRVGEE--------------------RGLKFIGKS  210 (262)
T ss_dssp             SHHHHHHHHHTTCSEEEEECCCCSSCHHHHHHHHHHHHTCEEEEECCCSEE--------------------TTEECCCCC
T ss_pred             hhHHHHHHHHhccccccCCcccccccchhhhhhhhhcccceEEEEeccccc--------------------CCccccCCC
Confidence            589999999999999999999988899999999999999999999999986                    467899999


Q ss_pred             EEECCCCceeecCCCCCccEEEEEechHHHHHHH--hhCCcCCCCCCcccee
Q 031270           81 VIISPSGTVLAGPNYEGEALISADLDLGEIAREK--FAFDVVGHYSRPEVLS  130 (162)
Q Consensus        81 ~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R--~~~~~~~~y~Rpd~~~  130 (162)
                      +|++|+|++++.++.++|+++++|||++.++..|  ..++++.| ||||+|.
T Consensus       211 ~i~~p~G~~l~~~~~~~e~i~~a~iDl~~~~~~r~~~~~~~~~~-rr~d~y~  261 (262)
T d1j31a_         211 LIASPKAEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFKD-RREEYYF  261 (262)
T ss_dssp             EEECTTSCEEEECCSSCCEEEEEEECHHHHHCCEEETTEETTTT-CCGGGSC
T ss_pred             EEEeCCCCEEEEcCCCCCEEEEEEEEcHHHHHHHHhccCCchhh-CCccccC
Confidence            9999999999999878999999999999998777  45788887 9999996

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1e-21  Score=154.69  Aligned_cols=104  Identities=24%  Similarity=0.312  Sum_probs=93.8

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      +|+..|.++.+|++++++|+++.    ...|+.++++||.||++||+++|++|..+                   ++..+
T Consensus       173 ~p~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~-------------------~~~~~  233 (281)
T d1f89a_         173 FPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQ-------------------SSYHA  233 (281)
T ss_dssp             CHHHHHHHHHTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECCCCCTT-------------------SSSCB
T ss_pred             cccchhhhhcccccceeEeeccccccccccccchhhhhcccccccceeeeecccCC-------------------CCcEe
Confidence            58999999999999999998874    34678889999999999999999999752                   45678


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCCCCC
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGHYSR  125 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~y~R  125 (162)
                      .|+|+|++|+|+++++++ .+|+++++|||++++++.|+.+|++.| ||
T Consensus       234 ~G~S~Ii~p~G~vl~~~~-~~e~v~~adidl~~~~~~R~~~~~~~~-rr  280 (281)
T d1f89a_         234 YGHSIVVDPRGKIVAEAG-EGEEIIYAELDPEVIESFRQAVPLTKQ-RR  280 (281)
T ss_dssp             CCCCEEECTTSCEEEECC-SSSEEEEEEECHHHHHHHHHHSCCCCC-CC
T ss_pred             eeceEEEcCCCCEEEECC-CCCeEEEEEEcHHHHHHHHHhCchhhh-CC
Confidence            999999999999999996 578999999999999999999999998 77

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.83  E-value=7.5e-21  Score=149.39  Aligned_cols=102  Identities=24%  Similarity=0.341  Sum_probs=92.6

Q ss_pred             CcHHHHHHHhCCCcEEEEeCCCC----hhhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCCCccc
Q 031270            1 MPLLRTALYGKGIEIYCAPTADS----RDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPDSVVC   76 (162)
Q Consensus         1 ~P~~~r~la~~Gaei~v~p~a~~----~~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~   76 (162)
                      .|++.|.++.+|++++++|+++.    ...|+.+++++|.+|++|++++|++|.+.                   ++..|
T Consensus       165 ~~e~~~~~~~~ga~~i~~p~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~n~~g~~~-------------------~~~~~  225 (271)
T d1emsa2         165 FPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHN-------------------PKRQS  225 (271)
T ss_dssp             CHHHHHHHHHTTCSEEECCBCCCHHHHHHHHHHHHHHHHHHHTCEEEECBBEEEEE-------------------TTEEE
T ss_pred             ccHHHHHHHhhcCcEEEecccccccccchhHHHHHHHHHhhhccccccccccccCC-------------------CCCEE
Confidence            48999999999999999999875    35678889999999999999999999852                   45678


Q ss_pred             cceeEEECCCCceeecCCCCCccEEEEEechHHHHHHHhhCCcCCC
Q 031270           77 AGGSVIISPSGTVLAGPNYEGEALISADLDLGEIAREKFAFDVVGH  122 (162)
Q Consensus        77 ~G~S~Iv~P~G~~la~~~~~~E~iv~adiDl~~i~~~R~~~~~~~~  122 (162)
                      +|+|+|++|+|++++++. .+|+++++|||+++++++|..+|+++|
T Consensus       226 ~G~S~I~~P~G~il~~~~-~~e~il~adiDl~~i~~~R~~~~~~~~  270 (271)
T d1emsa2         226 YGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFSH  270 (271)
T ss_dssp             ECCCEEECTTSCEEEECC-SSSCEEEEEEEHHHHHHHHHHSCGGGS
T ss_pred             eeeeEEEcCCCcEEEECC-CCCeEEEEEEcHHHHHHHHHhCCcccc
Confidence            999999999999999986 688999999999999999999999987

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.73  E-value=1.2  Score=32.24  Aligned_cols=62  Identities=11%  Similarity=0.111  Sum_probs=39.8

Q ss_pred             CCcEEEEeCCC--C--hh---------------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccCCCCC
Q 031270           12 GIEIYCAPTAD--S--RD---------------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEEDLTPD   72 (162)
Q Consensus        12 Gaei~v~p~a~--~--~~---------------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~~~~~   72 (162)
                      |++|+|.|=.+  +  ..               .+...++..|.+++++++.-...-.+                   .+
T Consensus        44 ~a~lvv~PE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~-------------------~~  104 (281)
T d1f89a_          44 DTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELD-------------------PK  104 (281)
T ss_dssp             TEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHHSSCEEECCCEEEEC-------------------TT
T ss_pred             CCEEEEcCCcccCCCchhHHHHHHhhhcccCCCHHHHHHHHHhhhcCceeecceeeeec-------------------cc
Confidence            99999998543  1  11               13345778899999998753321111                   12


Q ss_pred             CccccceeEEECCCCceeec
Q 031270           73 SVVCAGGSVIISPSGTVLAG   92 (162)
Q Consensus        73 ~~~~~G~S~Iv~P~G~~la~   92 (162)
                      +..++-.+.+++|+|+++..
T Consensus       105 ~~~~yNs~~~i~~~G~i~~~  124 (281)
T d1f89a_         105 TDKIYNTSIIFNEDGKLIDK  124 (281)
T ss_dssp             TCCEEEEEEEECTTSCEEEE
T ss_pred             cCceeeeccccccccccccc
Confidence            23455778899999998764

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.62  E-value=0.95  Score=32.81  Aligned_cols=69  Identities=13%  Similarity=0.079  Sum_probs=43.5

Q ss_pred             HHHHHhCCCcEEEEeCCC--C---h-----------hhHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCccccCcccC
Q 031270            5 RTALYGKGIEIYCAPTAD--S---R-----------DVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGIEED   68 (162)
Q Consensus         5 ~r~la~~Gaei~v~p~a~--~---~-----------~~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~~~~~e~~   68 (162)
                      .+.++.+|++|++.|=.+  .   .           ..+...++..|.+++++++.-...-..                 
T Consensus        30 i~~A~~~gadlvvfPE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~v~~G~~~~~~-----------------   92 (271)
T d1emsa2          30 IERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKD-----------------   92 (271)
T ss_dssp             HHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE-----------------
T ss_pred             HHHHHHCcCeEEECCccccccCCCHHHHHHHHHhhcchHHHhhhhhhhcccccccccceeeee-----------------
Confidence            345678999999999543  1   1           112334677899999999753211111                 


Q ss_pred             CCCCCccccceeEEECCCCceee
Q 031270           69 LTPDSVVCAGGSVIISPSGTVLA   91 (162)
Q Consensus        69 ~~~~~~~~~G~S~Iv~P~G~~la   91 (162)
                       ..++..++-.+++++|+|+++.
T Consensus        93 -~~~~~~~yNsa~vi~~~g~i~~  114 (271)
T d1emsa2          93 -PSDAAHPWNTHLIIDSDGVTRA  114 (271)
T ss_dssp             -TTEEEEEEEEEEEECTTSCEEE
T ss_pred             -ecCCCceeEEEEEEeCCceEEE
Confidence             0012245667899999998874

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=85.10  E-value=0.6  Score=34.54  Aligned_cols=70  Identities=13%  Similarity=0.019  Sum_probs=44.0

Q ss_pred             HHHHHhCCCcEEEEeCCC--Ch----------h-----------hHHHHHHHHhHhcCceEEEcCcccccCCCCCCCCcc
Q 031270            5 RTALYGKGIEIYCAPTAD--SR----------D-----------VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYV   61 (162)
Q Consensus         5 ~r~la~~Gaei~v~p~a~--~~----------~-----------~w~~~~~arA~En~~fVv~aN~~g~~~~~~~~~~~~   61 (162)
                      .+..+.+|++|++.|=.+  +.          .           .+...+...|.+++++++..-.--..+         
T Consensus        31 i~~A~~~gadlvvfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~i~i~~G~~~~~~~---------  101 (303)
T d1uf5a_          31 LTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVE---------  101 (303)
T ss_dssp             HHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHTCEEEEEEEEEEEE---------
T ss_pred             HHHHHHCCCcEEEcCCCccccCCccccccchhHHhhhhhhhcCCHHHHHHHHHHHhcCceEEEEeeeeeee---------
Confidence            455678999999998533  10          0           012345678999999999742211110         


Q ss_pred             ccCcccCCCCCCccccceeEEECCCCceeec
Q 031270           62 FSGIEEDLTPDSVVCAGGSVIISPSGTVLAG   92 (162)
Q Consensus        62 ~~~~e~~~~~~~~~~~G~S~Iv~P~G~~la~   92 (162)
                               .+...++-.+++++|+|+++..
T Consensus       102 ---------~~~~~~yNs~~li~~~G~i~~~  123 (303)
T d1uf5a_         102 ---------GGVKRRFNTSILVDKSGKIVGK  123 (303)
T ss_dssp             ---------TTEEEEEEEEEEECTTSCEEEE
T ss_pred             ---------cCCCeeEEEEEeeccccccccc
Confidence                     1122355678999999998764