Citrus Sinensis ID: 031288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MLLALALAFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccEEEEEEEEEEccccccccccccccccEEEEEEcccccccccccccccccEEEEEEccccccccccEEEEEEEcccccccccEEEEEEcccccccEEEccccEEEEccccEEEccccccccccEEEEEEEcccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccccccEEEccccEEEccccccccccccccccEEEccccccccccccccccccccEEEEEcccccccccccEEEEEEEEccccccccccEEEEcccccccEEccHHHHHEcccccEEEccccccccccEEEEEEcccccccccccEEEc
Coil and Loop (DISEMBL)
MLLALALAFLSisgddddmgiikrgrfissssdggsfpflhgphrKLLLRSAKkkeperwgerctkedivitqgptgimpngiptYTVEIMNACEtgcniseihlncgwfssaHLINHKILkrlsyndclvnegkplvsggtlkfqyantflypltvssvvc
Flexible Loop (DISEMBL)
MLLALALAFLSisgddddmgIIKRGRFISSSSDGGSFPFLHGPHRKLLLrsakkkeperwgerctkedivitqgptgimpnGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Low Complexity Region (SEG)
MllalalaflSISGddddMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Disordered region (IsUnstruct)
***********************************************************WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSS***
Disordered Region (DISOPRED)
*LLALALAFLSISGDDDDMGIIKRGRFIS*************PHRKLL********************IVITQGPTGI*PNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Disordered Region (DISEMBL)
MLLALALAFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRS***********RCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Disordered Region (DISPRO)
MLLALALAFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLALALAFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
A8MS78	127	Uncharacterized protein A	no	no	0.419	0.535	0.375	0.0003

>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 86  YTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYN--DCLVNEGKPLVSGGTL 143
           + VE+MN C   C I  + L C  F  + L++   L+ LS +  +C+VN+G PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 105

Query: 144 KFQYANTFLYPL 155
            F Y+NT  + L
Sbjct: 106 SFNYSNTHQFAL 117

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
449454951	182	PREDICTED: uncharacterized protein LOC10	0.746	0.664	0.707	2e-45
224119750	178	predicted protein [Populus trichocarpa]	0.882	0.803	0.588	3e-45
356508837	186	PREDICTED: uncharacterized protein LOC10	0.765	0.666	0.669	2e-44
356518864	178	PREDICTED: uncharacterized protein LOC10	0.734	0.668	0.688	4e-44
225456402	168	PREDICTED: uncharacterized protein LOC10	0.746	0.720	0.709	5e-44
357465003	350	Transcription activator BRG1 [Medicago t	0.765	0.354	0.637	3e-41
224134064	112	predicted protein [Populus trichocarpa]	0.666	0.964	0.712	2e-40
42573031	176	tapetum determinant 1 [Arabidopsis thali	0.734	0.676	0.576	1e-34
297846234	164	hypothetical protein ARALYDRAFT_473449 [	0.728	0.719	0.559	2e-34
79319075	179	uncharacterized protein [Arabidopsis tha	0.728	0.659	0.550	4e-34

>gi|449454951|ref|XP_004145217.1| PREDICTED: uncharacterized protein LOC101219731 [Cucumis sativus] gi|449472127|ref|XP_004153503.1| PREDICTED: uncharacterized protein LOC101213400 [Cucumis sativus] gi|449519928|ref|XP_004166986.1| PREDICTED: uncharacterized LOC101213400 [Cucumis sativus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 99/123 (80%), Gaps = 2/123 (1%)

Query: 42  GPHRKLLL-RSAKKKEPER-WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCN 99
            PHRKLLL R A  +EP R WGE+CTK DIVI QGPT  +P GIPTYTVE++NAC TGC 
Sbjct: 59  APHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCE 118

Query: 100 ISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSS 159
           I  IH  CGWFSSAHLIN ++ KRL Y+DCLVN+GKPLV GGTL FQYANT+ YPL+VSS
Sbjct: 119 IYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSS 178

Query: 160 VVC 162
           V+C
Sbjct: 179 VLC 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119750|ref|XP_002318153.1| predicted protein [Populus trichocarpa] gi|222858826|gb|EEE96373.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/163 (58%), Positives = 114/163 (69%), Gaps = 20/163 (12%)

Query: 8   AFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLH--------GPHRKLLLRSAKKKEPER 59
           +FLS SG D+       G F+     G S  FLH          HRKLL+RS   +EP R
Sbjct: 27  SFLSGSGKDE-------GGFM-----GLSHMFLHEEGNYSVSALHRKLLVRSLAMEEPNR 74

Query: 60  WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHK 119
            GE+CT  DIVI+QGPT  + +GIPTYTV+IMN C TGC+IS +HLNCGWFSSA LI+ K
Sbjct: 75  IGEKCTSADIVISQGPTAPLSSGIPTYTVQIMNMCATGCDISRVHLNCGWFSSARLIDPK 134

Query: 120 ILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 162
           I KRL YNDCLVN+GKPLV+GG L F+YANTF YPL+VSS+ C
Sbjct: 135 IFKRLRYNDCLVNDGKPLVTGGILTFEYANTFSYPLSVSSISC 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508837|ref|XP_003523160.1| PREDICTED: uncharacterized protein LOC100790055 [Glycine max]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 101/127 (79%), Gaps = 3/127 (2%)

Query: 39  FLHGPHRKLLL--RSAKKKEPER-WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACE 95
           FL   HRKLL      ++ EP R WGE+C+K D+VI QGPT  +P+GIPTYTVEIMN C 
Sbjct: 59  FLPNSHRKLLTSGNGNERVEPNRIWGEKCSKSDVVINQGPTAPLPSGIPTYTVEIMNMCV 118

Query: 96  TGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPL 155
           +GC+IS IHL CGWFSSA LIN K+ KRL YNDCLVN+G+PL++G T+ FQYANTFLYPL
Sbjct: 119 SGCDISGIHLRCGWFSSARLINPKLFKRLRYNDCLVNDGRPLINGATISFQYANTFLYPL 178

Query: 156 TVSSVVC 162
           +VSSVVC
Sbjct: 179 SVSSVVC 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518864|ref|XP_003528097.1| PREDICTED: uncharacterized protein LOC100792919 [Glycine max]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 100/122 (81%), Gaps = 3/122 (2%)

Query: 44  HRKLLLRSA--KKKEPER-WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNI 100
           HRKLL      ++ EP R WGE+C+K DIVI QGPT  +P+GIPTYTVEIMN C +GC+I
Sbjct: 56  HRKLLTSDNGNERVEPNRIWGEKCSKSDIVINQGPTAPLPSGIPTYTVEIMNMCVSGCDI 115

Query: 101 SEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSV 160
           S+IHL CGWFSSA LIN K+ KRL YNDCLVN+G+PL++G T+ FQYANTFLYPL+VSSV
Sbjct: 116 SKIHLRCGWFSSARLINPKLFKRLRYNDCLVNDGRPLINGATISFQYANTFLYPLSVSSV 175

Query: 161 VC 162
           VC
Sbjct: 176 VC 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456402|ref|XP_002280540.1| PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 101/124 (81%), Gaps = 3/124 (2%)

Query: 40  LHGPHRKLLLRSAKKKEPER-WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGC 98
           L  PHRKLL R+    EP R WGE+C+K DIVI QGPT  +P+GIPTYTVEIMN C TGC
Sbjct: 47  LSVPHRKLLHRALV--EPNRIWGEKCSKADIVINQGPTSPLPSGIPTYTVEIMNVCFTGC 104

Query: 99  NISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVS 158
           +IS IHL+CGWFSSA LIN +I KRL Y+DCLVN+G+PL +GGTL FQYANTF YPL+VS
Sbjct: 105 DISGIHLSCGWFSSARLINPRIFKRLRYDDCLVNDGRPLTNGGTLSFQYANTFPYPLSVS 164

Query: 159 SVVC 162
           SVVC
Sbjct: 165 SVVC 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465003|ref|XP_003602783.1| Transcription activator BRG1 [Medicago truncatula] gi|355491831|gb|AES73034.1| Transcription activator BRG1 [Medicago truncatula]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 101/127 (79%), Gaps = 3/127 (2%)

Query: 32  SDGGSFPFLHGPHRKLLLRSAKKK-EPER-WGER-CTKEDIVITQGPTGIMPNGIPTYTV 88
           ++  ++  +H PHRKLL  SA ++ EP R WG++ C+K DIVI QG T  +P+GIPTYTV
Sbjct: 56  NNNNNYTLIHTPHRKLLPHSATERLEPNRIWGDKKCSKSDIVINQGSTAPLPSGIPTYTV 115

Query: 89  EIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYA 148
           EIMN C +GC+IS IHL CGWFSSA LIN K+ KRL YNDCLVN+G+PLV+GGT+ FQYA
Sbjct: 116 EIMNMCVSGCDISAIHLRCGWFSSARLINPKLFKRLRYNDCLVNDGRPLVNGGTVSFQYA 175

Query: 149 NTFLYPL 155
           NT+LYPL
Sbjct: 176 NTYLYPL 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134064|ref|XP_002321727.1| predicted protein [Populus trichocarpa] gi|222868723|gb|EEF05854.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 90/108 (83%)

Query: 55  KEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAH 114
           +EP R GE+CT  DIV++QGPT  + +GIPTYTV+IMN C TGC+IS IHLNCGWFSS  
Sbjct: 4   EEPNRIGEKCTSADIVVSQGPTAPLSSGIPTYTVQIMNMCATGCDISGIHLNCGWFSSVR 63

Query: 115 LINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 162
           LI+ KI KRL YNDCLVN+GKPLV+GGTL F+YANTF YPL VSS+VC
Sbjct: 64  LIDPKIFKRLRYNDCLVNDGKPLVTGGTLTFEYANTFSYPLGVSSIVC 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573031|ref|NP_974612.1| tapetum determinant 1 [Arabidopsis thaliana] gi|38607340|gb|AAR25553.1| TPD1 [Arabidopsis thaliana] gi|332659584|gb|AEE84984.1| tapetum determinant 1 [Arabidopsis thaliana]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 86/125 (68%), Gaps = 6/125 (4%)

Query: 44  HRKLLL------RSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETG 97
           HRK+LL      ++ +  EPER GE+C   DIV+ Q  T  MPNGIP Y VEI N C +G
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSG 110

Query: 98  CNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTV 157
           C IS IH+NCGWFSSA LIN ++ KR+ Y+DCLVN GKPL  G TL F YANTF Y L+V
Sbjct: 111 CIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSV 170

Query: 158 SSVVC 162
           + V C
Sbjct: 171 AFVTC 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846234|ref|XP_002890998.1| hypothetical protein ARALYDRAFT_473449 [Arabidopsis lyrata subsp. lyrata] gi|297336840|gb|EFH67257.1| hypothetical protein ARALYDRAFT_473449 [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 89/118 (75%)

Query: 45  RKLLLRSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIH 104
           RKLLL         R G+ C+K+DIV+ QG T  +P+G+P+YTVEI N+C + CNI+EIH
Sbjct: 46  RKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIH 105

Query: 105 LNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 162
           ++CGWFSS  L+N ++ +RL Y+DCLVN+G+PL  G TL FQYAN+F YPL+V+SV C
Sbjct: 106 VSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQTLSFQYANSFSYPLSVASVSC 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319075|ref|NP_001031128.1| uncharacterized protein [Arabidopsis thaliana] gi|98961753|gb|ABF59206.1| unknown protein [Arabidopsis thaliana] gi|332193386|gb|AEE31507.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 89/118 (75%)

Query: 45  RKLLLRSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIH 104
           RKLLL         R G+ C+K+DIV+ QG T  +P+G+P+YTVEI N+C + CNI+EIH
Sbjct: 61  RKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIH 120

Query: 105 LNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 162
           ++CGWFSS  L+N ++ +RL Y+DCLVN+G+PL  G +L FQYAN+F YPL+V+SV C
Sbjct: 121 VSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:1006230300	176	TPD1 "AT4G24972" [Arabidopsis	0.734	0.676	0.576	2.8e-34
TAIR|locus:1009023131	179	AT1G32583 "AT1G32583" [Arabido	0.728	0.659	0.550	1.2e-33
TAIR|locus:2116702	124	AT4G32090 [Arabidopsis thalian	0.506	0.661	0.329	1.1e-05
TAIR|locus:2116612	124	AT4G32110 [Arabidopsis thalian	0.617	0.806	0.285	1.9e-05

TAIR|locus:1006230300 TPD1 "AT4G24972" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 72/125 (57%), Positives = 86/125 (68%)

Query:    44 HRKLLL------RSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETG 97
             HRK+LL      ++ +  EPER GE+C   DIV+ Q  T  MPNGIP Y VEI N C +G
Sbjct:    51 HRKMLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSG 110

Query:    98 CNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTV 157
             C IS IH+NCGWFSSA LIN ++ KR+ Y+DCLVN GKPL  G TL F YANTF Y L+V
Sbjct:   111 CIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSV 170

Query:   158 SSVVC 162
             + V C
Sbjct:   171 AFVTC 175

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0001709 "cell fate determination" evidence=IMP

GO:0048653 "anther development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1009023131 AT1G32583 "AT1G32583" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 65/118 (55%), Positives = 89/118 (75%)

Query:    45 RKLLLRSAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIH 104
             RKLLL         R G+ C+K+DIV+ QG T  +P+G+P+YTVEI N+C + CNI+EIH
Sbjct:    61 RKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIH 120

Query:   105 LNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 162
             ++CGWFSS  L+N ++ +RL Y+DCLVN+G+PL  G +L FQYAN+F YPL+V+SV C
Sbjct:   121 VSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2116702 AT4G32090 [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 28/85 (32%), Positives = 41/85 (48%)

Query:    64 CTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKR 123
             CT   I I    TG    G P + V ++N C   C    + L+CG F+ A  +   +L+ 
Sbjct:    24 CTFGKIQIGAVRTGREIGGQPEWKVTVINTCN--CFQKHVTLSCGGFAPAKPVKPLLLQP 81

Query:   124 LSYNDCLVNEGKPLVSGGTLKFQYA 148
                N CL+ +G  L +G T +F YA
Sbjct:    82 QG-NTCLMIKGAALPAGATAQFTYA 105

GO:0005576 "extracellular region" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2116612 AT4G32110 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 30/105 (28%), Positives = 48/105 (45%)

Query:    60 WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHK 119
             +G+ C+   + + Q  TG +    P + V + N C   C      L C  F+S   I+  
Sbjct:    22 YGD-CSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNN-CKFQNTELLCVGFNSVTPIDTS 79

Query:   120 ILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSS--VVC 162
             +L + S + CLVN GK +V    + F+Y     + L V    +VC
Sbjct:    80 LLLK-SGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGVMVC 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      162       149   0.00078  104 3  11 22  0.47    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  154 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.26u 0.13s 15.39t   Elapsed:  00:00:00
  Total cpu time:  15.26u 0.13s 15.39t   Elapsed:  00:00:00
  Start:  Fri May 10 20:24:53 2013   End:  Fri May 10 20:24:53 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PF09478	80	CBM49: Carbohydrate binding domain CBM49; InterPro	96.81
PLN02171	629	endoglucanase	89.77

>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=96.81  E-value=0.0055  Score=43.39  Aligned_cols=74  Identities=23%  Similarity=0.269  Sum_probs=55.0

Q ss_pred             eeEEeeecCCCCC-Cc--ceEEEEEEcCccCCcccccEEEecCCcc-cceeeCccceeeecCCceEe-cCCcccCCCCeE
Q 031288           69 IVITQGPTGIMPN-GI--PTYTVEIMNACETGCNISEIHLNCGWFS-SAHLINHKILKRLSYNDCLV-NEGKPLVSGGTL  143 (162)
Q Consensus        69 I~V~Q~~TG~~v~-G~--Pef~VtI~N~C~~~C~~s~V~L~CgGF~-Sa~~VDP~ifrrl~~d~CLV-N~G~PI~~g~~V  143 (162)
                      |+|.|..+..+.. |.  .+|.|+|+|.+  .=+++++++....+. +.=    .+-+ ..++.+-+ +.-.+|.+|+++
T Consensus         1 i~i~q~~~~sW~~~g~~y~qy~v~I~N~~--~~~I~~~~i~~~~l~~~iW----~l~~-~~~~~y~lPs~~~~i~pg~s~   73 (80)
T PF09478_consen    1 ITITQTLVNSWTENGQTYTQYDVTITNNG--SKPIKSLKISIDNLYGSIW----GLDK-VSGNTYTLPSYQPTIKPGQSF   73 (80)
T ss_pred             CEEEEEEEeEEEeCCEEEEEEEEEEEECC--CCeEEEEEEEECccchhhe----eEEe-ccCCEEECCccccccCCCCEE
Confidence            6889999888754 43  46999999999  679999999999775 211    2222 45666776 333499999999


Q ss_pred             EEEEec
Q 031288          144 KFQYAN  149 (162)
Q Consensus       144 sF~YAw  149 (162)
                      +|-|-.
T Consensus        74 ~FGYI~   79 (80)
T PF09478_consen   74 TFGYIS   79 (80)
T ss_pred             EEEEEe
Confidence            999953

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region

>PLN02171 endoglucanase

Probab=89.77  E-value=0.72  Score=44.54  Aligned_cols=77  Identities=19%  Similarity=0.250  Sum_probs=53.9

Q ss_pred             CCCeeEEeeecCCCCC---CcceEEEEEEcCccCCcccccEEEecCCcc-cceeeCccceeeecCCceEecCCc-ccCCC
Q 031288           66 KEDIVITQGPTGIMPN---GIPTYTVEIMNACETGCNISEIHLNCGWFS-SAHLINHKILKRLSYNDCLVNEGK-PLVSG  140 (162)
Q Consensus        66 ~sDI~V~Q~~TG~~v~---G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~-Sa~~VDP~ifrrl~~d~CLVN~G~-PI~~g  140 (162)
                      .+.|+|.|..++.+..   +..+|+|+|+|++  ..|++++++.=..+- +.=    .+.+  .++...+=+-. -|.+|
T Consensus       534 ~~ei~i~q~v~~sW~~~g~~y~qy~v~I~N~s--~~~ik~i~i~~~~~~~~iW----~v~~--~~ngytlPs~~~sL~aG  605 (629)
T PLN02171        534 SSPIEIEQKATASWKAKGRTYYRYSTTVTNRS--AKTLKELHLGISKLYGPLW----GLTK--AGYGYVLPSWMPSLPAG  605 (629)
T ss_pred             cceeEEEEEEEEEEEcCCceEEEEEEEEEECC--CCceeeeeeeeccccccch----heee--cCCcccCchhhcccCCC
Confidence            3379999999988863   4677999999999  899999999754432 211    1222  22334444432 78889


Q ss_pred             CeEEEEEecC
Q 031288          141 GTLKFQYANT  150 (162)
Q Consensus       141 ~~VsF~YAw~  150 (162)
                      ++++|-|-+.
T Consensus       606 ~s~tFgyI~~  615 (629)
T PLN02171        606 KSLEFVYVHS  615 (629)
T ss_pred             CeeEEEeecC
Confidence            9999999955

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00