Citrus Sinensis ID: 031291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MSTNQRRLNKNTTNNKNKDSSLINSQQQSVESNSCSPISWVEDMATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccHHccHHHHHHHHHHHcccEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHccccccccccccccccccccccccccccccHHHHHHHcccccHcHcccccccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHcHHHHccHHHcHHHHHHHHHHHHcHEEEc
Coil and Loop (DISEMBL)
mstnqrrlnknttnnknkdsslinsqqqsvesnscspiswvedmathsdsvagkksndvsndlQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Flexible Loop (DISEMBL)
mstnqrrlnknttnnknkdsslinsqqqsveSNSCSPISWVEDMATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Low Complexity Region (SEG)
MSTNQRRLnknttnnknkDSSLINSQQQSVESNSCSPISWVEDMATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Disordered region (IsUnstruct)
**************************************************************LQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHI*
Disordered Region (DISOPRED)
******************************************************************NAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Disordered Region (DISEMBL)
MSTNQRRLNKNT***********************SPISWVEDMATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Disordered Region (DISPRO)
*************************************************************DLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTNQRRLNKNTTNNKNKDSSLINSQQQSVESNSCSPISWVEDMATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q1ZXH4	123	ER membrane protein compl	yes	no	0.598	0.788	0.391	1e-14
Q3ZCG8	110	ER membrane protein compl	yes	no	0.567	0.836	0.434	2e-13
Q9CQW0	110	ER membrane protein compl	yes	no	0.567	0.836	0.434	8e-13
Q9BV81	110	ER membrane protein compl	yes	no	0.567	0.836	0.434	8e-13
Q6P0F0	110	ER membrane protein compl	yes	no	0.666	0.981	0.407	2e-12
Q6GLC5	110	ER membrane protein compl	yes	no	0.611	0.9	0.404	4e-12
Q68EU8	110	ER membrane protein compl	N/A	no	0.611	0.9	0.404	7e-12

>sp|Q1ZXH4|EMC6_DICDI ER membrane protein complex subunit 6 OS=Dictyostelium discoideum GN=emc6 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 66  FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFS 125
           +  E +Q N K + + +  +SI+GG IAG++GF+G+ GF+FYF I          K   +
Sbjct: 27  YEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKN 86

Query: 126 VHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           +H YF +   I  D    GLM ++LFWTF Y+I+HI+
Sbjct: 87  LHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNIIHIY 123

Dictyostelium discoideum (taxid: 44689)

>sp|Q3ZCG8|EMC6_BOVIN ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 58/92 (63%)

Query: 71  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA+   + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYF 78

Query: 131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
            S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

Bos taurus (taxid: 9913)

>sp|Q9CQW0|EMC6_MOUSE ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query: 71  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query: 131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
            S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

Mus musculus (taxid: 10090)

>sp|Q9BV81|EMC6_HUMAN ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query: 71  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query: 131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
            S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

Homo sapiens (taxid: 9606)

>sp|Q6P0F0|EMC6_DANRE ER membrane protein complex subunit 6 OS=Danio rerio GN=emc6 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 5/113 (4%)

Query: 50  SVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFL 109
           SVA K+        Q  +  +++ N  V+ Y RT +S + G  AGILG TGL GFVFYFL
Sbjct: 3   SVAAKREGP-----QFISEVSVRGNGAVLDYCRTSVSALSGATAGILGLTGLYGFVFYFL 57

Query: 110 IMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              + S+ L+ KA    +  F S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 58  ASFLLSLLLILKAGRRWNKCFKSRRLLFTGGLVGGLFTYVLFWTFLYGMVHVY 110

Danio rerio (taxid: 7955)

>sp|Q6GLC5|EMC6_XENTR ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query: 64  QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 123
           Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+ 
Sbjct: 12  QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSG 71

Query: 124 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 72  RKWNKYFKSRKPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

Xenopus tropicalis (taxid: 8364)

>sp|Q68EU8|EMC6_XENLA ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query: 64  QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 123
           Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+ 
Sbjct: 12  QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSG 71

Query: 124 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 72  RKWNKYFKSRKPLFTGGLVGGLFTYVLFWTFLYGMVHVY 110

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
296083215	474	unnamed protein product [Vitis vinifera]	0.901	0.308	0.731	1e-55
225432031	120	PREDICTED: transmembrane protein 93-like	0.734	0.991	0.833	3e-50
224112014	117	predicted protein [Populus trichocarpa]	0.722	1.0	0.831	9e-50
224099101	117	predicted protein [Populus trichocarpa]	0.722	1.0	0.815	2e-49
351734464	120	uncharacterized protein LOC100306269 [Gl	0.734	0.991	0.791	8e-48
449435645	119	PREDICTED: ER membrane protein complex s	0.734	1.0	0.756	7e-46
351728001	120	uncharacterized protein LOC100306572 [Gl	0.672	0.908	0.798	6e-44
351727182	120	uncharacterized protein LOC100526986 [Gl	0.629	0.85	0.833	3e-43
357448843	120	Transmembrane protein [Medicago truncatu	0.629	0.85	0.823	5e-43
357454297	120	Transmembrane protein [Medicago truncatu	0.629	0.85	0.823	6e-43

>gi|296083215|emb|CBI22851.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 121/149 (81%), Gaps = 3/149 (2%)

Query: 17  NKDSSLINSQQQSVESNSCSPIS--WVEDMATHSDSVAG-KKSNDVSNDLQIFNAENLQS 73
            K+S  I  +++  E N  SP S    E MA  +DS A  KKSN+ +ND+  FNAENLQS
Sbjct: 326 KKNSGSIQDREKREEGNRASPSSPGQKEKMAGRNDSGASEKKSNEATNDMPTFNAENLQS 385

Query: 74  NMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSW 133
           NMK+IYYSRTFLSIIGGVIAGILGFTG  GF+FYFL+MAITSV LMAKAKFSVHSYFDSW
Sbjct: 386 NMKIIYYSRTFLSIIGGVIAGILGFTGFTGFIFYFLVMAITSVGLMAKAKFSVHSYFDSW 445

Query: 134 NRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           NRI+LDGFLGGLMSFVLFWT AYDIVHIF
Sbjct: 446 NRIILDGFLGGLMSFVLFWTLAYDIVHIF 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432031|ref|XP_002280085.1| PREDICTED: transmembrane protein 93-like [Vitis vinifera]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 108/120 (90%), Gaps = 1/120 (0%)

Query: 44  MATHSDSVAG-KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM 102
           MA  +DS A  KKSN+ +ND+  FNAENLQSNMK+IYYSRTFLSIIGGVIAGILGFTG  
Sbjct: 1   MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 60

Query: 103 GFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           GF+FYFL+MAITSV LMAKAKFSVHSYFDSWNRI+LDGFLGGLMSFVLFWT AYDIVHIF
Sbjct: 61  GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMSFVLFWTLAYDIVHIF 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112014|ref|XP_002316053.1| predicted protein [Populus trichocarpa] gi|222865093|gb|EEF02224.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 107/119 (89%), Gaps = 2/119 (1%)

Query: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103
           MA H++S   KKS+D  NDLQ F AENLQSNMKVIYYSRTFLSIIGGVIAGILG TGL G
Sbjct: 1   MAGHNES--EKKSSDAVNDLQTFRAENLQSNMKVIYYSRTFLSIIGGVIAGILGLTGLTG 58

Query: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           FVFYFL+M ITSV L+AKAKFS+H+YFDSWNR+LLDGFLGGLMSFVLFWTFAYDIVHIF
Sbjct: 59  FVFYFLMMTITSVALIAKAKFSIHTYFDSWNRVLLDGFLGGLMSFVLFWTFAYDIVHIF 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099101|ref|XP_002311375.1| predicted protein [Populus trichocarpa] gi|222851195|gb|EEE88742.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/119 (81%), Positives = 108/119 (90%), Gaps = 2/119 (1%)

Query: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103
           MA H++S   KKS+D  +DLQ F AENLQSNMKVIYYSRTFLSIIGGV+AGILGFTGL G
Sbjct: 1   MAGHNES--EKKSSDALDDLQTFRAENLQSNMKVIYYSRTFLSIIGGVVAGILGFTGLTG 58

Query: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           FVFYFL+MAITSV L+AKAKFS+H+YFDSWNR++ DGFLGGLMSFVLFWTFAYDIVHIF
Sbjct: 59  FVFYFLVMAITSVALIAKAKFSIHTYFDSWNRVVFDGFLGGLMSFVLFWTFAYDIVHIF 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734464|ref|NP_001236282.1| uncharacterized protein LOC100306269 [Glycine max] gi|255628061|gb|ACU14375.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 95/120 (79%), Positives = 107/120 (89%), Gaps = 1/120 (0%)

Query: 44  MATHSDSVAG-KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM 102
           MA HSDS +  KKS++  N+L  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFTGL 
Sbjct: 1   MAVHSDSASSEKKSSNGVNELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLK 60

Query: 103 GFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           GFVFY L+MA TS+ L+AKAKFS H+YFDSWNR+LLDGFLGGLMSFVLFWTFAYDIVHIF
Sbjct: 61  GFVFYLLLMAFTSLGLVAKAKFSTHTYFDSWNRVLLDGFLGGLMSFVLFWTFAYDIVHIF 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435645|ref|XP_004135605.1| PREDICTED: ER membrane protein complex subunit 6-like [Cucumis sativus]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 106/119 (89%)

Query: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103
           MA +S + + KKS+D+++D+ IFNAENLQ+N+K+IYYSRTFLSIIGGVIAG+LGFTGL G
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           F+FYFL+MAITSV L AKA FS HSYF+S N+IL DGFL GLMSFVLFWTFAYDIVHIF
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTFAYDIVHIF 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728001|ref|NP_001236924.1| uncharacterized protein LOC100306572 [Glycine max] gi|255628917|gb|ACU14803.1| unknown [Glycine max]

 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 98/109 (89%)

Query: 54  KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAI 113
           KK  D  NDL  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFT L GFVFYFL+M +
Sbjct: 12  KKPGDGVNDLLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTSLKGFVFYFLLMMV 71

Query: 114 TSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           TS+ L+AKA+FS+HSYFDS NR+LLDGFLGGLMSFVLFWTFA+DIVHIF
Sbjct: 72  TSLGLVAKARFSIHSYFDSSNRVLLDGFLGGLMSFVLFWTFAFDIVHIF 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727182|ref|NP_001236896.1| uncharacterized protein LOC100526986 [Glycine max] gi|255631310|gb|ACU16022.1| unknown [Glycine max]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 95/102 (93%)

Query: 61  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 120
           N+L  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFTGL GFVFY L+MA+TS+ L+A
Sbjct: 19  NELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLKGFVFYLLLMALTSLGLVA 78

Query: 121 KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           KAKFS H+YFDSWNR+LLDGF GGLMSFVLFWTFAYDIVHIF
Sbjct: 79  KAKFSTHTYFDSWNRVLLDGFQGGLMSFVLFWTFAYDIVHIF 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448843|ref|XP_003594697.1| Transmembrane protein [Medicago truncatula] gi|355483745|gb|AES64948.1| Transmembrane protein [Medicago truncatula]

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 94/102 (92%)

Query: 61  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 120
           N+L  FNAEN+QSNMK IYYSRTFLSIIGGV+AGILGFTGL GF+FY L+MA TSV L+A
Sbjct: 19  NELLTFNAENMQSNMKTIYYSRTFLSIIGGVVAGILGFTGLKGFIFYVLLMAFTSVGLIA 78

Query: 121 KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           KAKFS+H+YFDSWNR+L+DGFLGGLMSFVLFWTFAYDI HIF
Sbjct: 79  KAKFSIHTYFDSWNRVLIDGFLGGLMSFVLFWTFAYDIAHIF 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454297|ref|XP_003597429.1| Transmembrane protein [Medicago truncatula] gi|355486477|gb|AES67680.1| Transmembrane protein [Medicago truncatula]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 95/102 (93%)

Query: 61  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 120
           N+L  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFTGL GFVFY L+MA TS+ L+A
Sbjct: 19  NELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLKGFVFYALLMAFTSLGLVA 78

Query: 121 KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
           KAKFS+H+YFDSWNR+L+DGFLGGLMSFVLFWTFAYDI HIF
Sbjct: 79  KAKFSIHTYFDSWNRVLIDGFLGGLMSFVLFWTFAYDIAHIF 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2157849	114	AT5G49540 "AT5G49540" [Arabido	0.672	0.956	0.733	2.6e-40
UNIPROTKB|F1NHM7	112	TMEM93 "Uncharacterized protei	0.611	0.883	0.414	7.5e-18
UNIPROTKB|Q3ZCG8	110	EMC6 "ER membrane protein comp	0.567	0.836	0.434	1.6e-17
UNIPROTKB|Q9BV81	110	EMC6 "ER membrane protein comp	0.567	0.836	0.434	3.2e-17
MGI|MGI:1913298	110	Emc6 "ER membrane protein comp	0.567	0.836	0.434	3.2e-17
RGD|1309231	110	Emc6 "ER membrane protein comp	0.567	0.836	0.434	3.2e-17
UNIPROTKB|F1N0Z5	110	EMC6 "ER membrane protein comp	0.567	0.836	0.434	4.1e-17
UNIPROTKB|E2R7Q9	110	EMC6 "Uncharacterized protein"	0.567	0.836	0.434	4.1e-17
UNIPROTKB|F1RHE3	110	EMC6 "Uncharacterized protein"	0.567	0.836	0.434	4.1e-17
DICTYBASE|DDB_G0280399	123	tmem93 "DUF786 family protein"	0.592	0.780	0.418	5.3e-17

TAIR|locus:2157849 AT5G49540 "AT5G49540" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 80/109 (73%), Positives = 94/109 (86%)

Query:    54 KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAI 113
             K+S D+ +D+  F+AENLQ+N+KVI  SRTFLSII GV+AGI+GF GL+GFVFYF++M I
Sbjct:     6 KRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVVMLI 65

Query:   114 TSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
             TSV LMAKA FS   YFDSWNR+L DGFLGGLMSFVLFWTFAYD+VHIF
Sbjct:    66 TSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLMSFVLFWTFAYDLVHIF 114

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|F1NHM7 TMEM93 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/99 (41%), Positives = 60/99 (60%)

Query:    64 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 123
             Q  +   ++ N  ++ Y RT +S + G  AGILG TGL GF+FYFL   + S+ L+ KA 
Sbjct:    14 QFISEAAVRGNAAILDYCRTSVSALSGATAGILGLTGLHGFIFYFLASVLLSLLLVLKAG 73

Query:   124 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
                + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    74 RRWNKYFKSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 112

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q3ZCG8 EMC6 "ER membrane protein complex subunit 6" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 40/92 (43%), Positives = 58/92 (63%)

Query:    71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA+   + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYF 78

Query:   131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q9BV81 EMC6 "ER membrane protein complex subunit 6" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:   131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

MGI|MGI:1913298 Emc6 "ER membrane protein complex subunit 6" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:   131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=ISO

RGD|1309231 Emc6 "ER membrane protein complex subunit 6" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:   131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0016021 "integral to membrane" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=IEA;ISO

UNIPROTKB|F1N0Z5 EMC6 "ER membrane protein complex subunit 6" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAGRRWNKYF 78

Query:   131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|E2R7Q9 EMC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:   131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLVGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|F1RHE3 EMC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAGRRWNKYF 78

Query:   131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=IEA

DICTYBASE|DDB_G0280399 tmem93 "DUF786 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/98 (41%), Positives = 61/98 (62%)

Query:    66 FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA-KAKF 124
             +  E +Q N K + + +  +SI+GG IAG++GF+G+ GF+FYF I  IT   L   K   
Sbjct:    27 YEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFSGVYGFLFYFFIY-ITFCSLFTLKENK 85

Query:   125 SVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
             ++H YF +   I  D    GLM ++LFWTF Y+I+HI+
Sbjct:    86 NLHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNIIHIY 123

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
pfam07019	81	pfam07019, Rab5ip, Rab5-interacting protein (Rab5i	1e-29

>gnl|CDD|148567 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip)

 Score =  103 bits (258), Expect = 1e-29
 Identities = 37/81 (45%), Positives = 47/81 (58%)

Query: 76  KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNR 135
            V+Y+ R  +S++ GVIAGILG TG +GF+FYFLI   TS    AK       YF     
Sbjct: 1   DVLYWVRQVISLLAGVIAGILGLTGFLGFIFYFLISLGTSYLYYAKVGKIDEEYFGGRWE 60

Query: 136 ILLDGFLGGLMSFVLFWTFAY 156
           +  +G L GL +FVL WT  Y
Sbjct: 61  LFTEGLLTGLATFVLTWTLFY 81

This family consists of several Rab5-interacting protein (RIP5 or Rab5ip) sequences. The ras-related GTPase rab5 is rate-limiting for homotypic early endosome fusion. Rab5ip represents a novel rab5 interacting protein that may function on endocytic vesicles as a receptor for rab5-GDP and participate in the activation of rab5. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG4455	110	consensus Uncharacterized conserved protein [Funct	100.0
PF07019	81	Rab5ip: Rab5-interacting protein (Rab5ip)	99.95
KOG3415	129	consensus Putative Rab5-interacting protein [Intra	99.85
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	84.49
COG5487	54	Small integral membrane protein [Function unknown]	84.43
PRK13682	51	hypothetical protein; Provisional	81.15

>KOG4455 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-34  Score=217.21  Aligned_cols=110  Identities=42%  Similarity=0.718  Sum_probs=104.8

Q ss_pred             cccCCCCCccccccChHHHHhhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 031291           53 GKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDS  132 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~env~~N~~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~  132 (162)
                      +|.+.+++..++.|+.++++.|.++++++|+.+|+++||+||||||||+.||+||++++++.+.++..|++++|.+||++
T Consensus         1 ~k~s~~~~~~~~~~s~aav~nN~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s   80 (110)
T KOG4455|consen    1 EKMSKAEEVFIPIYSTAAVRNNKKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQS   80 (110)
T ss_pred             CccchhhhcCCcchhHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCc
Confidence            35566778899999999999999999999999999999999999999999999999998888888888999999999999


Q ss_pred             hhhHhhhhhhhhHHHHHHHHHhhccceeeC
Q 031291          133 WNRILLDGFLGGLMSFVLFWTFAYDIVHIF  162 (162)
Q Consensus       133 ~~~l~~eG~~~gl~tFVL~WTL~Y~lVHIy  162 (162)
                      +.++|++++++++++|||+||++|++||+|
T Consensus        81 ~~~~f~~~f~~Gl~tyVl~Wtf~Y~lv~~~  110 (110)
T KOG4455|consen   81 RRNLFTESFLGGLTTYVLAWTFFYGLVHVY  110 (110)
T ss_pred             hhHHHHHHHhchHHHHHHHHHHHhhhhccC
Confidence            999999999999999999999999999997

>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)

Probab=99.95  E-value=9.8e-28  Score=170.65  Aligned_cols=81  Identities=46%  Similarity=0.911  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHhhhhhhhhHHHHHHHHHhh
Q 031291           76 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFA  155 (162)
Q Consensus        76 ~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~~~~l~~eG~~~gl~tFVL~WTL~  155 (162)
                      |+++|+||++|+++|++||||||||+.||++|+++++++++++++|.++++++||++++|+++||+++++++|||+||++
T Consensus         1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~   80 (81)
T PF07019_consen    1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF   80 (81)
T ss_pred             CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 031291          156 Y  156 (162)
Q Consensus       156 Y  156 (162)
                      |
T Consensus        81 Y   81 (81)
T PF07019_consen   81 Y   81 (81)
T ss_pred             C
Confidence            8

>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.8e-21  Score=147.70  Aligned_cols=88  Identities=25%  Similarity=0.478  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHhhhhhhhhHHHHHHHHH
Q 031291           74 NMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWT  153 (162)
Q Consensus        74 N~~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~~~~l~~eG~~~gl~tFVL~WT  153 (162)
                      =+|+++|+||+++++.|+++||+||+|+.|++.|+..+..+.++|+++..+.+++.|++.+++..|||+.+|++|++.|+
T Consensus        41 llDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~kEGf~asfa~FlvtWI  120 (129)
T KOG3415|consen   41 LLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELLKEGFMASFALFLVTWI  120 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             hhccceee
Q 031291          154 FAYDIVHI  161 (162)
Q Consensus       154 L~Y~lVHI  161 (162)
                      ++|+++|.
T Consensus       121 i~Yt~~hy  128 (129)
T KOG3415|consen  121 IFYTLAHY  128 (129)
T ss_pred             HHHhhhcc
Confidence            99999994

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=84.49  E-value=0.9  Score=35.24  Aligned_cols=14  Identities=50%  Similarity=0.975  Sum_probs=12.4

Q ss_pred             HHHHHHHHhhhhcc
Q 031291           84 FLSIIGGVIAGILG   97 (162)
Q Consensus        84 ~~sll~Gi~AGILG   97 (162)
                      ++.+++|++|||+|
T Consensus        66 i~~Ii~gv~aGvIg   79 (122)
T PF01102_consen   66 IIGIIFGVMAGVIG   79 (122)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHH
Confidence            48899999999986

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>COG5487 Small integral membrane protein [Function unknown]

Probab=84.43  E-value=2.8  Score=28.30  Aligned_cols=33  Identities=27%  Similarity=0.649  Sum_probs=22.0

Q ss_pred             HHHHHHhhhhccccchhH-------HHHHHHHHHHHHHHH
Q 031291           86 SIIGGVIAGILGFTGLMG-------FVFYFLIMAITSVCL  118 (162)
Q Consensus        86 sll~Gi~AGILGLtGl~G-------Fify~l~~~lis~l~  118 (162)
                      =++.-++||.||+.|+.|       ++||+.+.+++..++
T Consensus         8 FlvialIa~~lGFgGiagaaAgiAkIlF~i~~vlf~vsL~   47 (54)
T COG5487           8 FLVIALIAGALGFGGIAGAAAGIAKILFFIFLVLFLVSLF   47 (54)
T ss_pred             HHHHHHHHHHhCcccHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            356678899999999988       455555444444333

>PRK13682 hypothetical protein; Provisional

Probab=81.15  E-value=4.4  Score=27.18  Aligned_cols=21  Identities=33%  Similarity=0.702  Sum_probs=17.3

Q ss_pred             HHHHHHHHhhhhccccchhHH
Q 031291           84 FLSIIGGVIAGILGFTGLMGF  104 (162)
Q Consensus        84 ~~sll~Gi~AGILGLtGl~GF  104 (162)
                      ++-++..++||++|++|+.|-
T Consensus         6 liFliiA~iA~~lGF~GiAg~   26 (51)
T PRK13682          6 IIFLVIALIAAVLGFGGIAGA   26 (51)
T ss_pred             HHHHHHHHHHHHhccchHHHH
Confidence            345678899999999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00