Citrus Sinensis ID: 031307

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MVMVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERILGGFRYPLANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP
Secondary Structure (PSIPRED)
cEEEEEccccccccccccccccccccccccccccEEEEEccccccHHHHcccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccEccccccEccccccccccEEEEEccccccEEcccccEEEcccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVMVMVSGLlancpglihssqrtklpieagrcnrirfidysaiqpverilggfryplanhlgnncvnsvgrdynqltynddipeepfWLSLVKDIIWALKSLFLFLvgqpsqlkhiewpgfqstlKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP
Flexible Loop (DISEMBL)
MVMVMVSGLLancpglihssqrtklpieAGRCNRIRFIDYSAIQPVERILGGFRYPLANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP
Low Complexity Region (SEG)
MVMVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERILGGFRYPLANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQstlktatltlvlvallivalssvdsalSFILALLLRRTP
Disordered region (IsUnstruct)
***VMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERILGGFRYPLANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL****
Disordered Region (DISOPRED)
**MVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERILGGFRYPLA*********************DDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRR**
Disordered Region (DISEMBL)
MVMVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERILGGFRYPLANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP
Disordered Region (DISPRO)
MVMVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERILGGFRYPLANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVMVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERILGGFRYPLANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224080654	160	predicted protein [Populus trichocarpa]	0.981	0.987	0.552	9e-39
225428098	157	PREDICTED: uncharacterized protein LOC10	0.956	0.980	0.55	1e-37
255560485	159	conserved hypothetical protein [Ricinus	0.950	0.962	0.564	1e-37
297744565	156	unnamed protein product [Vitis vinifera]	0.950	0.980	0.547	4e-37
147822738	519	hypothetical protein VITISV_033562 [Viti	0.931	0.289	0.538	2e-34
356571626	156	PREDICTED: uncharacterized protein LOC10	0.645	0.666	0.596	2e-29
356550117	156	PREDICTED: uncharacterized protein LOC10	0.645	0.666	0.615	1e-25
388520459	155	unknown [Lotus japonicus]	0.639	0.664	0.625	3e-25
18420248	153	uncharacterized protein [Arabidopsis tha	0.621	0.653	0.574	8e-25
297797836	147	hypothetical protein ARALYDRAFT_490609 [	0.894	0.979	0.444	3e-24

>gi|224080654|ref|XP_002306197.1| predicted protein [Populus trichocarpa] gi|222849161|gb|EEE86708.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 3   MVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERI--LGGFRYPLANH 60
           M +V+G      GL+   +  KL     RCN ++F DY A++   R    GG RY  A  
Sbjct: 1   MAIVTGFPKQFSGLV-CPRNYKLSFGTQRCNEVKFSDYGAVRLECRRNPRGGLRYVPAKL 59

Query: 61  LGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPG 120
             N  V   GR   QL++ DD+P++PFWLS +K+ IWA K+LF+FLV QP QLK+IEWPG
Sbjct: 60  SCNKHVLYAGRGPYQLSHEDDLPQKPFWLSFIKEAIWAWKALFVFLVEQPGQLKYIEWPG 119

Query: 121 FQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP 161
           FQSTL+TA LTLVLVALLIVALSSVDS L ++LALLLRRTP
Sbjct: 120 FQSTLRTAMLTLVLVALLIVALSSVDSVLCYVLALLLRRTP 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428098|ref|XP_002280561.1| PREDICTED: uncharacterized protein LOC100245308 [Vitis vinifera]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/160 (55%), Positives = 109/160 (68%), Gaps = 6/160 (3%)

Query: 3   MVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERIL--GGFRYPLANH 60
           M+++ GLL  C GLIH     +LP    RCN I F   +A+    R +  G  RY     
Sbjct: 1   MMILPGLLPACSGLIH----PELPFRDQRCNGIGFKGCNAVGIACRKVPRGRIRYFHEER 56

Query: 61  LGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPG 120
           LG+ CV   GR+ ++L++ +D P+EPF LS +K+  WALKSLF FLV QPSQLK+IEWP 
Sbjct: 57  LGSKCVAYAGRNRHELSFANDSPKEPFLLSSIKEAFWALKSLFEFLVDQPSQLKYIEWPS 116

Query: 121 FQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRT 160
           FQSTLKTA LTLVLVA LIVALSS+DSAL F+L + LRRT
Sbjct: 117 FQSTLKTAILTLVLVAALIVALSSIDSALCFLLTMFLRRT 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560485|ref|XP_002521257.1| conserved hypothetical protein [Ricinus communis] gi|223539525|gb|EEF41113.1| conserved hypothetical protein [Ricinus communis]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 109/156 (69%), Gaps = 3/156 (1%)

Query: 5   MVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVER-ILGGFRYPLANHLGN 63
           ++SG   +  GL+    +    I+  RCN IRF   + I+P ++   GG +Y  A    N
Sbjct: 4   VISGFPTSFSGLVTCHPKHLFGIQ--RCNGIRFKITNTIRPSQKNTGGGIQYFTAKPSSN 61

Query: 64  NCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQS 123
             V SVGRDY QL+Y DD P+EPF LS +K+ IWA+KSLF+FLV QPSQLK+IEWP F S
Sbjct: 62  KKVLSVGRDYYQLSYKDDSPQEPFLLSFIKEAIWAMKSLFIFLVEQPSQLKYIEWPSFHS 121

Query: 124 TLKTATLTLVLVALLIVALSSVDSALSFILALLLRR 159
           TLKTA LTLV+VALLIVALSSVDS L ++LA LLRR
Sbjct: 122 TLKTAILTLVIVALLIVALSSVDSILCYLLAWLLRR 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744565|emb|CBI37827.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 108/159 (67%), Gaps = 6/159 (3%)

Query: 4   VMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERIL--GGFRYPLANHL 61
           +++ GLL  C GLIH     +LP    RCN I F   +A+    R +  G  RY     L
Sbjct: 1   MILPGLLPACSGLIH----PELPFRDQRCNGIGFKGCNAVGIACRKVPRGRIRYFHEERL 56

Query: 62  GNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGF 121
           G+ CV   GR+ ++L++ +D P+EPF LS +K+  WALKSLF FLV QPSQLK+IEWP F
Sbjct: 57  GSKCVAYAGRNRHELSFANDSPKEPFLLSSIKEAFWALKSLFEFLVDQPSQLKYIEWPSF 116

Query: 122 QSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRT 160
           QSTLKTA LTLVLVA LIVALSS+DSAL F+L + LRRT
Sbjct: 117 QSTLKTAILTLVLVAALIVALSSIDSALCFLLTMFLRRT 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822738|emb|CAN68296.1| hypothetical protein VITISV_033562 [Vitis vinifera]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 102/156 (65%), Gaps = 6/156 (3%)

Query: 7   SGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERIL--GGFRYPLANHLGNN 64
            G   N  GLIH     +LP    RCN I F   +A+    R +  G   Y     LG+ 
Sbjct: 367 DGTRGNGRGLIHP----ELPFRDQRCNGIGFKGCNAVGIACRKVPRGRIXYFHEERLGSK 422

Query: 65  CVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPGFQST 124
           CV   GR+ ++L++ +D P+EPF LS +K+  WALKSLF FLV QPSQLK+IEWP FQST
Sbjct: 423 CVAYAGRNRHELSFANDSPKEPFLLSSIKEAFWALKSLFEFLVDQPSQLKYIEWPSFQST 482

Query: 125 LKTATLTLVLVALLIVALSSVDSALSFILALLLRRT 160
           LKTA LTLVLVA LIVALSS+DSAL F+L + LRRT
Sbjct: 483 LKTAILTLVLVAALIVALSSIDSALCFLLTMFLRRT 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571626|ref|XP_003553977.1| PREDICTED: uncharacterized protein LOC100815558 [Glycine max]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 81/104 (77%)

Query: 58  ANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIE 117
           AN+     V S  R+ + L+Y+DD+P+EPF L+L+KD IW L+ +F+FL  QPSQ K+IE
Sbjct: 53  ANYSCTKFVTSAARNDHHLSYDDDLPQEPFLLTLIKDAIWGLRYIFVFLAEQPSQFKYIE 112

Query: 118 WPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP 161
           WP F STL+TA LTL+LVA+LIVALSSVDSALS++LA  LR+ P
Sbjct: 113 WPSFSSTLRTAILTLILVAMLIVALSSVDSALSYLLAFALRKRP 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550117|ref|XP_003543436.1| PREDICTED: uncharacterized protein LOC100790097 [Glycine max]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 83/104 (79%)

Query: 58  ANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIE 117
           ANH     V S  R+ + L+Y+DD+P+EPF L+L+KD+IW L+ +F+FLV QP Q K+IE
Sbjct: 53  ANHSCTKFVTSAARNDHHLSYDDDLPQEPFLLTLIKDVIWGLRYIFVFLVEQPGQFKYIE 112

Query: 118 WPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP 161
           WP F STL+TA LTL+LVA+LIVALSSVDSALS++LAL LR+ P
Sbjct: 113 WPSFSSTLRTAILTLILVAMLIVALSSVDSALSYLLALALRKRP 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520459|gb|AFK48291.1| unknown [Lotus japonicus]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 83/104 (79%), Gaps = 1/104 (0%)

Query: 58  ANHLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIE 117
           ANH+ +  V S  R+   L Y DD+P++PF L+L+KD  W LKSLF FL+ QPSQLK++E
Sbjct: 53  ANHICSKFVTSAARNGRHLCY-DDLPQKPFLLTLIKDAFWGLKSLFEFLIEQPSQLKYVE 111

Query: 118 WPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP 161
           WP F +TL+TATLTLV+VALLIVALSSVDSAL ++LAL LR++P
Sbjct: 112 WPSFSNTLRTATLTLVIVALLIVALSSVDSALYYLLALALRKSP 155

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420248|ref|NP_568043.1| uncharacterized protein [Arabidopsis thaliana] gi|15451094|gb|AAK96818.1| Unknown protein [Arabidopsis thaliana] gi|18377452|gb|AAL66892.1| unknown protein [Arabidopsis thaliana] gi|332661533|gb|AEE86933.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 76/101 (75%), Gaps = 1/101 (0%)

Query: 62  GNNCVNSVGRDYNQLTYNDDIPEE-PFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPG 120
           G+  V SVG      + +  +PEE P WLSL++D++W+ +SL  F+  QPSQLK+IEWP 
Sbjct: 53  GSGTVGSVGSARESWSSHKKLPEEEPLWLSLLRDMVWSTRSLLSFMAEQPSQLKYIEWPT 112

Query: 121 FQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP 161
           F STLKTATL+L LVA+ IVALSSVD+AL +ILAL+LR+ P
Sbjct: 113 FASTLKTATLSLCLVAVFIVALSSVDAALCYILALILRKAP 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797836|ref|XP_002866802.1| hypothetical protein ARALYDRAFT_490609 [Arabidopsis lyrata subsp. lyrata] gi|297312638|gb|EFH43061.1| hypothetical protein ARALYDRAFT_490609 [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 18/162 (11%)

Query: 3   MVMVSGLLANCPGLIHSSQRTKLPIEAG---RCNRIRFIDYSAIQPVERILGGFRYPLAN 59
           MV+  GLL+N  GLI  +   ++    G    C   +F    +I          R    +
Sbjct: 1   MVVSPGLLSNVSGLIRLAPSHRIQRHDGFGPSC--FKFSGDPSING--------RVSHKH 50

Query: 60  HLGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWP 119
             G   V SVG+ +N+L       EEP WLSL++DI+W+ +SL  F+  QPSQLK+IEWP
Sbjct: 51  VRGYGTVVSVGQSWNKLP-----EEEPLWLSLLRDIVWSTRSLLSFMAEQPSQLKYIEWP 105

Query: 120 GFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP 161
            F STLKTATL+L LVA+ IV LSSVD+AL ++LAL+LR+ P
Sbjct: 106 SFTSTLKTATLSLCLVAVFIVGLSSVDAALCYMLALILRKAP 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2121179	153	AT4G38490 [Arabidopsis thalian	0.621	0.653	0.356	1.3e-13

TAIR|locus:2121179 AT4G38490 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 36/101 (35%), Positives = 51/101 (50%)

Query:    62 GNNCVNSVGRDYNQLTYNDDIPEE-PFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPG 120
             G+  V SVG      + +  +PEE P WLSL++D++W+ +SL  F+  QPSQLK+IEWP 
Sbjct:    53 GSGTVGSVGSARESWSSHKKLPEEEPLWLSLLRDMVWSTRSLLSFMAEQPSQLKYIEWPT 112

Query:   121 FQXXXXXXXXXXXXXXXXXXXXXXXXXXXSFILALLLRRTP 161
             F                             +ILAL+LR+ P
Sbjct:   113 FASTLKTATLSLCLVAVFIVALSSVDAALCYILALILRKAP 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.143   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       134   0.00091  102 3  11 22  0.36    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.31u 0.23s 11.54t   Elapsed:  00:00:01
  Total cpu time:  11.31u 0.23s 11.54t   Elapsed:  00:00:01
  Start:  Fri May 10 21:10:38 2013   End:  Fri May 10 21:10:39 2013

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam00584	56	pfam00584, SecE, SecE/Sec61-gamma subunits of prot	0.001

>gnl|CDD|201325 pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 111 SQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL 156
           ++LK + WP  + TLKT  + LV V ++ + L  VD    +++ L+
Sbjct: 11  AELKKVVWPTRKETLKTTVVVLVFVLVMALFLWLVDLVFGWLVNLI 56

SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex. Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PF00584	57	SecE: SecE/Sec61-gamma subunits of protein translo	99.56
PRK05740	92	secE preprotein translocase subunit SecE; Reviewed	99.51
PRK07597	64	secE preprotein translocase subunit SecE; Reviewed	99.48
TIGR00964	55	secE_bact preprotein translocase, SecE subunit, ba	99.46
COG0690	73	SecE Preprotein translocase subunit SecE [Intracel	99.41

>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway

Probab=99.56  E-value=1.7e-15  Score=100.27  Aligned_cols=56  Identities=29%  Similarity=0.497  Sum_probs=53.7

Q ss_pred             HHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 031307          102 LFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL  157 (161)
Q Consensus       102 l~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~L  157 (161)
                      +.+|+.|++.|+|||+||+++|++++|.+|++++++++++++.+|.++++++++++
T Consensus         2 ~~~f~~~~~~Elkkv~WP~~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~i~   57 (57)
T PF00584_consen    2 IKNFFREVKKELKKVTWPSRKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNLIL   57 (57)
T ss_dssp             CHHHHHCHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            36899999999999999999999999999999999999999999999999999875

Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.

>PRK05740 secE preprotein translocase subunit SecE; Reviewed

Probab=99.51  E-value=1.4e-14  Score=105.98  Aligned_cols=59  Identities=24%  Similarity=0.532  Sum_probs=55.9

Q ss_pred             HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 031307          100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLR  158 (161)
Q Consensus       100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~Lr  158 (161)
                      +.+..|+.|.+.|+|||+||+++|++++|++|++++++++++++.+|.+++++++++++
T Consensus        34 ~~~~~F~k~v~~ElkKV~WPtr~e~~~~t~~Viv~~~i~~l~i~~~D~~~~~li~~i~~   92 (92)
T PRK05740         34 KAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLDSILVWLISFITG   92 (92)
T ss_pred             HHHHHHHHHHHHHhhhccCcCHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            46788999999999999999999999999999999999999999999999999998763

>PRK07597 secE preprotein translocase subunit SecE; Reviewed

Probab=99.48  E-value=3.2e-14  Score=96.83  Aligned_cols=57  Identities=28%  Similarity=0.485  Sum_probs=54.1

Q ss_pred             HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031307          100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL  156 (161)
Q Consensus       100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~  156 (161)
                      +.+.+|+.|.+.|+|||+||+++|+++++++|++++++++++++.+|.++.++++++
T Consensus         8 ~~~~~f~~~~~~ElkkV~WPs~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~~~~l   64 (64)
T PRK07597          8 KKLKKFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKLISLL   64 (64)
T ss_pred             HHHHHHHHHHHHHHhhCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            568899999999999999999999999999999999999999999999999998753

>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial

Probab=99.46  E-value=3.2e-14  Score=94.86  Aligned_cols=54  Identities=22%  Similarity=0.472  Sum_probs=51.5

Q ss_pred             HHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031307          103 FLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL  156 (161)
Q Consensus       103 ~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~  156 (161)
                      .+|+.|.+.|+|||+||+++|+.+++++|++++++++++++.+|.+++++++++
T Consensus         2 ~~f~~~~~~ElkkV~WPt~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~~~~i   55 (55)
T TIGR00964         2 FKFFKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSLFLFGVDYVFGKLISLI   55 (55)
T ss_pred             hhHHHHHHHHHhcCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            579999999999999999999999999999999999999999999999998753

This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.

>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]

Probab=99.41  E-value=1.3e-13  Score=97.49  Aligned_cols=55  Identities=24%  Similarity=0.495  Sum_probs=52.4

Q ss_pred             HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 031307          100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILA  154 (161)
Q Consensus       100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla  154 (161)
                      +...+|+.|...|+|||+||+++|+++++++|+++++++++++..+|..++++++
T Consensus        18 k~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~i~   72 (73)
T COG0690          18 KKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLVS   72 (73)
T ss_pred             HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
3dl8_C	65	SECE; RECA-type ATPase membrane protein translocat	2e-04
3din_D	65	Preprotein translocase subunit SECE; protein trans	2e-04

>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 65

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 99  LKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL 157
           ++ L  FL G   +LK + WP  +  +K     ++    + V L  +D   + I++ +L
Sbjct: 1   MEKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFIL 59

>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 65

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 99  LKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLR 158
           ++ L  F     ++ K I WP  +  L +  + LV++A+  V    +D   S +++ + +
Sbjct: 1   MEKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFK 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3dl8_C	65	SECE; RECA-type ATPase membrane protein translocat	99.62
2zjs_E	60	Preprotein translocase SECE subunit; translocon, S	99.61
3din_D	65	Preprotein translocase subunit SECE; protein trans	99.59
3j01_B	116	Preprotein translocase SECE subunit; ribonucleopro	99.41
3bo0_B	65	Preprotein translocase SECE subunit; ribosome-SECY	99.0

>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}

Probab=99.62  E-value=2.5e-16  Score=107.65  Aligned_cols=59  Identities=24%  Similarity=0.400  Sum_probs=31.8

Q ss_pred             HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 031307          100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLR  158 (161)
Q Consensus       100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~Lr  158 (161)
                      +.+.+|+.|++.|+|||+|||++|+.++|++|+++++++++++..+|.++++++.+++.
T Consensus         2 ~k~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~   60 (65)
T 3dl8_C            2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILS   60 (65)
T ss_dssp             --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999873

>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E

Probab=99.61  E-value=1.1e-16  Score=107.46  Aligned_cols=58  Identities=19%  Similarity=0.466  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031307           99 LKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL  156 (161)
Q Consensus        99 ~ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~  156 (161)
                      ++.+.+|+.|.+.|+|||+|||++|+.++|++|++++++++++++.+|.+++++++++
T Consensus         2 ~~~~~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~~i   59 (60)
T 2zjs_E            2 FARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL   59 (60)
T ss_dssp             ----------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred             chHHHHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567899999999999999999999999999999999999999999999998887653

>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}

Probab=99.59  E-value=2e-16  Score=108.06  Aligned_cols=58  Identities=22%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 031307          100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL  157 (161)
Q Consensus       100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~L  157 (161)
                      +.+.+|+.|.+.|+|||+|||++|+.++|++|+++++++++++..+|.++++++.+++
T Consensus         2 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~   59 (65)
T 3din_D            2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIF   59 (65)
T ss_dssp             --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999987

>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z

Probab=99.41  E-value=9.2e-15  Score=110.23  Aligned_cols=57  Identities=19%  Similarity=0.378  Sum_probs=55.0

Q ss_pred             HHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 031307          101 SLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL  157 (161)
Q Consensus       101 sl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~L  157 (161)
                      .+.+|+.|.+.|+|||+|||++||.++|++|+++++++++++..+|.++++++.+++
T Consensus        56 ~~~~F~kev~~ElkKV~WPtr~E~~~~T~vViv~vii~al~l~~vD~~~~~~v~~i~  112 (116)
T 3j01_B           56 ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFIT  112 (116)
T ss_dssp             CTTTCSSSHHHHHHHHHTTTTTSCHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHhheeeCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999987

>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B

Probab=99.00  E-value=1.1e-10  Score=78.31  Aligned_cols=54  Identities=19%  Similarity=0.324  Sum_probs=50.6

Q ss_pred             HHHHHHHhhCCccccceecCCc----cchh---hhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 031307          100 KSLFLFLVGQPSQLKHIEWPGF----QSTL---KTATLTLVLVALLIVALSSVDSALSFIL  153 (161)
Q Consensus       100 ksl~~Fl~Eq~~ELKkVeWPs~----~eTl---kTt~lvLVlV~~livaLs~VDsaLs~ll  153 (161)
                      +.+.+|+.|...|+|||.||++    +|+.   ++|+++++++.+++.++..+|..+..++
T Consensus         4 ~~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~~i~~~l   64 (65)
T 3bo0_B            4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHC
T ss_pred             chHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999    9999   9999999999999999999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00