Citrus Sinensis ID: 031333

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-

MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSPEC

ccEEEEEEcccccccccEEEEEccccccHHHHHccccEEEEEEEccccEEEEEEEEEEEEccccccHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccEEEEEEEccEEEEEEccccccEEEEEEEcccccccEEEEEEEccc

ccEEEEEEEcccccccEEEEEEccccHHHHHHHccccEEEEEEEccccEEEEEEEEEEEEccccccHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccEEEEEEccccEEEEEcccccccEEEEEEcccccccEEEEEEcccc

MRVICWVFrgfqdntdkiqinsDTRSRKIeelkscpfseicwYFTESWdqfringrvdvidgsnsdpeklQIREKSWFGCSMKARLqyldpeqgcpsvneqpkefsldpcagpvdaFCVLildpdqvdylnlkSNQKLKFMSRLSDNGEKYWASLKTSPEC

MRVICWVfrgfqdntdkiqinsdtrsrkieelkscPFSEICWYFTESWDQFRINGRVDvidgsnsdpeklQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFmsrlsdngekywaslktspec

MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSPEC

**VICWVFRGFQDNTDKIQIN******KIEELKSCPFSEICWYFTESWDQFRINGRVDVIDG********QIREKSWFGCSMKARLQYLD**************FSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF*********************

MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWF**SMKARLQYLDP********************GPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSPEC

MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYW*********

*RVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQG**************PCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSPEC

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MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSPEC

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		161	2.2.26 [Sep-21-2011]
Q9ZPY1		198	Pyridoxine/pyridoxamine 5	yes	no	0.950	0.772	0.584	8e-50

>sp\|Q9ZPY1\|PPOX2_ARATH Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 OS=Arabidopsis thaliana GN=PPOX2 PE=1 SV=2	Back alignment and function desciption

 Score =  195 bits (496), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 121/154 (78%), Gaps = 1/154 (0%)

Query: 7   VFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
           VFRGF++N+D+IQIN+D RSRKIEELK CPFSE+CWYF+++W+QFRINGR++VID SN D
Sbjct: 45  VFRGFEENSDRIQINTDLRSRKIEELKHCPFSEMCWYFSDTWEQFRINGRIEVIDASNPD 104

Query: 67  PEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQ-PKEFSLDPCAGPVDAFCVLILDPD 125
             KLQ REK+WF  S+++RL Y+ P  G P  +EQ  ++  LDP +GPV  +C+L+L+P+
Sbjct: 105 QTKLQQREKAWFANSLRSRLIYVCPTPGSPCNSEQSSQQVKLDPSSGPVPEYCLLLLEPE 164

Query: 126 QVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSP 159
           +VDYLNLK+NQ+L F S  +  GEK W S K +P
Sbjct: 165 KVDYLNLKTNQRLFFSSMATGTGEKCWTSEKVNP 198

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). Has an in vitro catalytic efficiency for PNP approximately 300-fold lower than that of PPOX1.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		161
225470948		197	PREDICTED: pyridoxine/pyridoxamine 5'-ph	0.950	0.776	0.675	2e-53
224130576		197	predicted protein [Populus trichocarpa]	0.950	0.776	0.668	4e-53
388496120		196	unknown [Medicago truncatula]	0.950	0.780	0.649	6e-53
356560059		196	PREDICTED: uncharacterized protein LOC10	0.950	0.780	0.655	2e-52
195649895		205	hypothetical protein [Zea mays]	0.950	0.746	0.623	3e-52
224068008		199	predicted protein [Populus trichocarpa]	0.950	0.768	0.642	3e-52
242042505		204	hypothetical protein SORBIDRAFT_01g04956	0.944	0.745	0.636	5e-52
414864362		205	TPA: hypothetical protein ZEAMMB73_33119	0.950	0.746	0.616	2e-51
226492332		205	uncharacterized protein LOC100277985 [Ze	0.950	0.746	0.610	8e-51
297828389		198	hypothetical protein ARALYDRAFT_483819 [	0.950	0.772	0.603	3e-49

>gi\|225470948\|ref\|XP_002265908.1\| PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase [Vitis vinifera] gi\|297745497\|emb\|CBI40577.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/154 (67%), Positives = 124/154 (80%), Gaps = 1/154 (0%)

Query: 7   VFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
           VFRGFQ ++DKIQIN+D R+RKIEELK CPFSEICWYFT+SW+QFRINGRVDVIDGS+ D
Sbjct: 44  VFRGFQGDSDKIQINTDGRTRKIEELKHCPFSEICWYFTDSWEQFRINGRVDVIDGSDPD 103

Query: 67  PEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP-KEFSLDPCAGPVDAFCVLILDPD 125
           P KLQ RE +WF  S+K+RLQYL P  G P ++EQP +E S DP  GPV AFC+LILDPD
Sbjct: 104 PMKLQERENAWFASSLKSRLQYLGPNPGLPCLSEQPAQECSPDPSTGPVAAFCLLILDPD 163

Query: 126 QVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSP 159
           QVDYLNLK+N++L F S  + +G K W S K +P
Sbjct: 164 QVDYLNLKNNERLTFTSSKNVDGVKCWNSEKINP 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224130576\|ref\|XP_002320875.1\| predicted protein [Populus trichocarpa] gi\|222861648\|gb\|EEE99190.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|388496120\|gb\|AFK36126.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356560059\|ref\|XP_003548313.1\| PREDICTED: uncharacterized protein LOC100779815 [Glycine max]	Back alignment and taxonomy information

>gi\|195649895\|gb\|ACG44415.1\| hypothetical protein [Zea mays]	Back alignment and taxonomy information

>gi\|224068008\|ref\|XP_002302643.1\| predicted protein [Populus trichocarpa] gi\|222844369\|gb\|EEE81916.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|242042505\|ref\|XP_002468647.1\| hypothetical protein SORBIDRAFT_01g049560 [Sorghum bicolor] gi\|241922501\|gb\|EER95645.1\| hypothetical protein SORBIDRAFT_01g049560 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|414864362\|tpg\|DAA42919.1\| TPA: hypothetical protein ZEAMMB73_331194 [Zea mays]	Back alignment and taxonomy information

>gi\|226492332\|ref\|NP_001144884.1\| uncharacterized protein LOC100277985 [Zea mays] gi\|195648396\|gb\|ACG43666.1\| hypothetical protein [Zea mays]	Back alignment and taxonomy information

>gi\|297828389\|ref\|XP_002882077.1\| hypothetical protein ARALYDRAFT_483819 [Arabidopsis lyrata subsp. lyrata] gi\|297327916\|gb\|EFH58336.1\| hypothetical protein ARALYDRAFT_483819 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		161
TAIR\|locus:2039949		198	AT2G46580 [Arabidopsis thalian	0.950	0.772	0.584	2.9e-48
SGD\|S000003249		297	YGR017W "Putative protein of u	0.285	0.154	0.377	0.00069

TAIR\|locus:2039949 AT2G46580 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 90/154 (58%), Positives = 121/154 (78%)

Query:     7 VFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
             VFRGF++N+D+IQIN+D RSRKIEELK CPFSE+CWYF+++W+QFRINGR++VID SN D
Sbjct:    45 VFRGFEENSDRIQINTDLRSRKIEELKHCPFSEMCWYFSDTWEQFRINGRIEVIDASNPD 104

Query:    67 PEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP-KEFSLDPCAGPVDAFCVLILDPD 125
               KLQ REK+WF  S+++RL Y+ P  G P  +EQ  ++  LDP +GPV  +C+L+L+P+
Sbjct:   105 QTKLQQREKAWFANSLRSRLIYVCPTPGSPCNSEQSSQQVKLDPSSGPVPEYCLLLLEPE 164

Query:   126 QVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSP 159
             +VDYLNLK+NQ+L F S  +  GEK W S K +P
Sbjct:   165 KVDYLNLKTNQRLFFSSMATGTGEKCWTSEKVNP 198

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

SGD\|S000003249 YGR017W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPY1	PPOX2_ARATH	1, ., 4, ., 3, ., 5	0.5844	0.9503	0.7727	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		161
TIGR04026		185	TIGR04026, PPOX_FMN_cyano, PPOX class probable FMN	4e-31
pfam12766		98	pfam12766, Pyridox_oxase_2, Pyridoxamine 5'-phosph	3e-22
COG5135		245	COG5135, COG5135, Uncharacterized conserved protei	1e-10

>gnl\|CDD\|188541 TIGR04026, PPOX_FMN_cyano, PPOX class probable FMN-dependent enzyme, alr4036 family	Back alignment and domain information

 Score =  110 bits (276), Expect = 4e-31
 Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 7   VFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
           VFRG+ D ++++++ +D RS KIE+L   P +EICWYF ++ +QFR+ G++ ++  ++ D
Sbjct: 41  VFRGWGD-SNQLELFTDARSEKIEQLAQNPNAEICWYFPKTREQFRLRGKLTLVT-ADDD 98

Query: 67  PEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQ 126
           PE+LQ     W   S  AR Q+  P  G P          L   A P + F +L+L+P  
Sbjct: 99  PERLQAH---WQQLSDAARSQWFWPHPGQPLNPTAAFPEELPDNAPPPENFVLLLLEPQS 155

Query: 127 VDYLNLKSNQKLKFMSRLSDNG 148
           VD+L L+ +   + +    +NG
Sbjct: 156 VDHLELRGHPHNRRLWERDENG 177

Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily described here is widespread in Cyanobacteria and plants, and is named for alr4036 from Nostoc sp. PCC 7120. The family consists mostly of proteins from species that lack the capability to synthesize F420, so it is probable that all members bind FMN rather than F420 [Unknown function, Enzymes of unknown specificity]. Length = 185

>gnl\|CDD\|221760 pfam12766, Pyridox_oxase_2, Pyridoxamine 5'-phosphate oxidase	Back alignment and domain information

>gnl\|CDD\|227464 COG5135, COG5135, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		161
COG0259		214	PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta	100.0
TIGR00558		217	pdxH pyridoxamine-phosphate oxidase. This model is	100.0
PRK05679		195	pyridoxamine 5'-phosphate oxidase; Provisional	100.0
PLN03049		462	pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr	100.0
PLN02918		544	pyridoxine (pyridoxamine) 5'-phosphate oxidase	100.0
KOG2586		228	consensus Pyridoxamine-phosphate oxidase [Coenzyme	99.97
COG5135		245	Uncharacterized conserved protein [Function unknow	99.96
KOG4558		251	consensus Uncharacterized conserved protein [Funct	99.92
PF12766		100	Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase	99.89
COG3871		145	Uncharacterized stress protein (general stress pro	99.33
TIGR03618		117	Rv1155_F420 PPOX class probable F420-dependent enz	99.32
TIGR03667		130	Rv3369 PPOX class probable F420-dependent enzyme,	99.29
PF10590		42	PNPOx_C: Pyridoxine 5'-phosphate oxidase C-termina	99.16
PF01243		89	Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase	99.09
TIGR03666		132	Rv2061_F420 PPOX class probable F420-dependent enz	98.12
TIGR03668		141	Rv0121_F420 PPOX class probable F420-dependent enz	97.5
PRK06733		151	hypothetical protein; Provisional	97.48
COG5015		132	Uncharacterized conserved protein [Function unknow	97.43
PRK03467		144	hypothetical protein; Provisional	97.31
PF12900		143	Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I	96.71
PF13883		170	Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase	95.19
COG3467		166	Predicted flavin-nucleotide-binding protein [Gener	94.24
TIGR00026		113	hi_GC_TIGR00026 deazaflavin-dependent nitroreducta	91.88

>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]	Back alignment and domain information

Probab=100.00  E-value=4e-37  Score=234.12  Aligned_cols=144  Identities=15%  Similarity=0.208  Sum_probs=124.3

Q ss_pred             CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333            1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC   80 (161)
Q Consensus         1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~   80 (161)
                      |++|+|+||+|+  +.+++|||++.|+|++||++||+|++||||+.+.|||||.|.|+.|++++++.||        .+.
T Consensus        60 P~~R~VLLK~~D--erGfvFyTN~~S~Kg~eLa~np~Aal~F~W~~L~RQVrv~G~ve~vs~eesd~Yf--------~sR  129 (214)
T COG0259          60 PSSRIVLLKELD--ERGFVFYTNYGSRKGRELAANPYAALLFPWKELERQVRVEGRVERVSDEESDAYF--------ASR  129 (214)
T ss_pred             ceeeEEEecccC--CCcEEEEeccCCcchhhHhhCcceeEEecchhccceEEEeeeeeeCCHHHHHHHH--------hcC
Confidence            689999999995  8999999999999999999999999999999999999999999999999886655        677


Q ss_pred             ChhhhhccccCCCCCcCCCCCC--C------cccCCCCCCCCCcEEEEEEeeeEEEeEecC---CCcEEEEEEccCCCCC
Q 031333           81 SMKARLQYLDPEQGCPSVNEQP--K------EFSLDPCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGE  149 (161)
Q Consensus        81 ~~~~r~~~~~~~pg~~~~~~~~--~------~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~---~h~R~~f~~~~~~~~~  149 (161)
                      |..+|..--++.++.||.+..+  +      ....+.+.|.|++|+||+|.|.+||||+++   .|+|++|.++.     
T Consensus       130 Pr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r~~-----  204 (214)
T COG0259         130 PRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPRPPHWGGFRIVPESIEFWQGRPSRLHDRLRYRRDD-----  204 (214)
T ss_pred             CCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCCCCCCCCccceEeeeeEEEEecCCCccceeeEEEeecC-----
Confidence            7777766545689999987443  1      112344568899999999999999999998   49999999973     


Q ss_pred             CCceEEEccc
Q 031333          150 KYWASLKTSP  159 (161)
Q Consensus       150 ~~W~~~~l~P  159 (161)
                      ++|...+|+|
T Consensus       205 g~W~~~RL~P  214 (214)
T COG0259         205 GGWKIERLAP  214 (214)
T ss_pred             CCeEEEecCC
Confidence            6899999998

>TIGR00558 pdxH pyridoxamine-phosphate oxidase	Back alignment and domain information

>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional	Back alignment and domain information

>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional	Back alignment and domain information

>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase	Back alignment and domain information

>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]	Back alignment and domain information

>COG5135 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4558 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E	Back alignment and domain information

>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]	Back alignment and domain information

>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme	Back alignment and domain information

>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family	Back alignment and domain information

>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1	Back alignment and domain information

>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1	Back alignment and domain information

>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family	Back alignment and domain information

>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family	Back alignment and domain information

>PRK06733 hypothetical protein; Provisional	Back alignment and domain information

>COG5015 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK03467 hypothetical protein; Provisional	Back alignment and domain information

>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP)	Back alignment and domain information

>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C	Back alignment and domain information

>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		161
2i51_A		195	Crystal Structure Of A Pyridoxamine 5'-Phosphate Ox		2e-20

>pdb|2I51|A Chain A, Crystal Structure Of A Pyridoxamine 5'-Phosphate Oxidase-Related, Fmn Binding Protein (Npun_f5749) From Nostoc Punctiforme Pcc 73102 At 1.40 A Resolution Length = 195

Back alignment and structure

Iteration: 1

Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 5/155 (3%) Query: 7 VFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66 VFRGF ++T++++ +DTRS K ++++ P++EICWYF + +QFR G + +I +S Sbjct: 44 VFRGFLEDTNQLRFITDTRSAKADQIQQQPWAEICWYFPNTREQFRXAGDLTLISSDDSH 103 Query: 67 PEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDP--CAGPVDAFCVLILDP 124 + R W S ARLQ+ P G P + E F P PV FC+L+LDP Sbjct: 104 QDLQPARIAXWQELSDAARLQFGWPYPGKPRIKES-GAFEPSPPDPIEPVPNFCLLLLDP 162 Query: 125 DQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSP 159 QVD+L L+ + +++ +D E W+S +P Sbjct: 163 VQVDHLELRGEPQNRWLYHRNDQQE--WSSEAINP 195

PyMOL of 2i51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		161
2i51_A		195	Uncharacterized conserved protein of COG5135; pyri	7e-33
2ou5_A		175	Pyridoxamine 5'-phosphate oxidase-related, FMN-BI;	2e-11

>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Length = 195	Back alignment and structure

 Score =  114 bits (287), Expect = 7e-33
 Identities = 52/144 (36%), Positives = 83/144 (57%), Gaps = 1/144 (0%)

Query: 7   VFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
           VFRGF ++T++++  +DTRS K ++++  P++EICWYF  + +QFR+ G + +I   +S 
Sbjct: 44  VFRGFLEDTNQLRFITDTRSAKADQIQQQPWAEICWYFPNTREQFRMAGDLTLISSDDSH 103

Query: 67  PEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQ-PKEFSLDPCAGPVDAFCVLILDPD 125
            +    R   W   S  ARLQ+  P  G P + E    E S      PV  FC+L+LDP 
Sbjct: 104 QDLQPARIAMWQELSDAARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPV 163

Query: 126 QVDYLNLKSNQKLKFMSRLSDNGE 149
           QVD+L L+   + +++   +D  E
Sbjct: 164 QVDHLELRGEPQNRWLYHRNDQQE 187

PyMOL of 2i51

>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Length = 175	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		161
2i51_A		195	Uncharacterized conserved protein of COG5135; pyri	100.0
2ou5_A		175	Pyridoxamine 5'-phosphate oxidase-related, FMN-BI;	100.0
1ci0_A		228	Protein (PNP oxidase); B6 metabolism, structural g	100.0
1dnl_A		199	Pyridoxine 5'-phosphate oxidase; beta barrel, prot	100.0
1nrg_A		261	Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore	100.0
2a2j_A		246	Pyridoxamine 5'-phosphate oxidase; beta barrel, st	99.98
1ty9_A		222	Phenazine biosynthesis protein PHZG; chorismate, o	99.97
2qea_A		160	Putative general stress protein 26; structural gen	99.77
3dmb_A		147	Putative general stress protein 26 with A PNP-OXI	99.76
2re7_A		134	Uncharacterized protein; general stress protein CO	99.74
2ig6_A		150	NIMC/NIMA family protein; structural genomics, joi	99.69
2hhz_A		150	Pyridoxamine 5'-phosphate oxidase-related; structu	99.67
3u35_A		182	General stress protein; PNP-oxidase like fold, FMN	99.67
2i02_A		148	General stress protein of COG3871; pyridoxamine 5'	99.66
2hq7_A		146	Protein, related to general stress protein 26(GS2	99.58
3ec6_A		139	General stress protein 26; alpha-beta structure, s	99.57
3ba3_A		145	Protein LP_0091, pyridoxamine 5'-phosphate oxidase	99.53
2iab_A		155	Hypothetical protein; NP_828636.1, structural geno	99.5
2fhq_A		141	Putative general stress protein; alpha-beta struct	99.45
3db0_A		128	LIN2891 protein; putative pyridoxamine 5'-phosphat	99.42
1vl7_A		157	Hypothetical protein ALR5027; structural genomics,	99.26
2asf_A		137	Hypothetical protein RV2074; H37RV, structural gen	99.12
3f7e_A		131	Pyridoxamine 5'-phosphate oxidase-related, FMN- bi	98.99
1rfe_A		162	Hypothetical protein RV2991; structural genomics,	98.97
2aq6_A		147	Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos	98.88
2htd_A		140	Predicted flavin-nucleotide-binding protein from f	98.84
2q9k_A		151	Uncharacterized protein; split barrel-like fold, s	98.49
3tgv_A		148	Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	98.29
3cp3_A		148	Uncharacterized protein; alpha-beta fold, structur	98.22
2arz_A		247	Hypothetical protein PA4388; hypothetical protein,	98.21
2hti_A		185	BH0577 protein; structural genomics, joint center	98.05
1xhn_A		184	CREG, cellular repressor of E1A-stimulated genes;	98.0
3swj_A		251	CHUZ, putative uncharacterized protein; heme oxyge	97.94
2fg9_A		178	5-nitroimidazole antibiotic resistance protein; ST	97.83
2hq9_A		149	MLL6688 protein; structural genomics, joint center	97.82
3dnh_A		258	Uncharacterized protein ATU2129; APC6114, agrobact	97.59
2fur_A		209	Hypothetical protein; structural genomics, joint c	97.41
3u5w_A		148	Putative uncharacterized protein; ssgcid, seattle	97.36
3gas_A		259	Heme oxygenase; FMN-binding split barrel, oxidored	97.31
2vpa_A		216	NIMA-related protein; cofactor, atomic resolution,	97.13
3a6r_A		122	FMN-binding protein; electron transport, flavoprot	96.82
3fkh_A		138	Putative pyridoxamine 5'-phosphate oxidase; NP_601	96.72
3in6_A		148	FMN-binding protein; structural genomics, joint ce	95.43
3r5l_A		122	Deazaflavin-dependent nitroreductase; PA-824, spli	84.73
2ol5_A		202	PAI 2 protein; structural genomics, PSI-2, protein	82.55

>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}	Back alignment and structure

Probab=100.00  E-value=6.9e-39  Score=246.47  Aligned_cols=155  Identities=34%  Similarity=0.591  Sum_probs=136.0

Q ss_pred             CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333            1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC   80 (161)
Q Consensus         1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~   80 (161)
                      |++|+|+|++++.++++|+|+||.+|+|++||++||+|+|||||+...+||||+|+|+++++++.+.||+..+.++|+++
T Consensus        38 P~~R~v~~~~~d~~~~~l~F~T~~~S~K~~~l~~np~v~l~f~~~~~~~qvri~G~a~~v~~~~~~~~~~~~r~~~w~~~  117 (195)
T 2i51_A           38 PANRTLVFRGFLEDTNQLRFITDTRSAKADQIQQQPWAEICWYFPNTREQFRMAGDLTLISSDDSHQDLQPARIAMWQEL  117 (195)
T ss_dssp             EEEEEEECCCBCTTSSCEEEEEETTSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEEECSSSTTGGGHHHHHHHHHHS
T ss_pred             eeEEEEEEEEEcCCCCeEEEEEcCCccHHHHHhhCCeEEEEEEeCCCCEEEEEEEEEEEEChHHhhhhhHHHHHHHHHhC
Confidence            67999999999733359999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhhccccCCCCCcCCCCCCCcc-cCCCCCCCCCcEEEEEEeeeEEEeEecC--CCcEEEEEEccCCCCCCCceEEEc
Q 031333           81 SMKARLQYLDPEQGCPSVNEQPKEF-SLDPCAGPVDAFCVLILDPDQVDYLNLK--SNQKLKFMSRLSDNGEKYWASLKT  157 (161)
Q Consensus        81 ~~~~r~~~~~~~pg~~~~~~~~~~~-~~~~~~~~~~~f~v~~l~p~~ve~l~l~--~h~R~~f~~~~~~~~~~~W~~~~l  157 (161)
                      +..+|..|.++.||+++.+...... ......+.|+||+||+|.|++||||+++  .|+|++|++..    +++|..++|
T Consensus       118 ~~~sr~~~~~~spg~~~~~~~~~~~~~~~~~~p~p~~w~~~~v~P~~iefwq~~~~rh~R~~y~~~~----~~~W~~~rl  193 (195)
T 2i51_A          118 SDAARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEPQNRWLYHRND----QQEWSSEAI  193 (195)
T ss_dssp             CHHHHHGGGSCCTTSBCCCCGGGGCCCCCCSSSCCTTEEEEEEEEEEEEEEESSSSSCEEEEEEECT----TSCEEEEEB
T ss_pred             ChhhhhhcccCCCCCCccchhHHhhhhccCCCCCCCceEEEEEEccEEEEEecCCCCceEEEEEECC----CCCEEEEEe
Confidence            9999999999999999874432111 0123457899999999999999999997  49999999853    247999999


Q ss_pred             cc
Q 031333          158 SP  159 (161)
Q Consensus       158 ~P  159 (161)
                      +|
T Consensus       194 ~P  195 (195)
T 2i51_A          194 NP  195 (195)
T ss_dssp             CC
T ss_pred             CC
Confidence            98

PyMOL of 2i51

>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP}	Back alignment and structure

>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1	Back alignment and structure

>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A*	Back alignment and structure

>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A*	Back alignment and structure

>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1	Back alignment and structure

>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A*	Back alignment and structure

>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP}	Back alignment and structure

>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}	Back alignment and structure

>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus}	Back alignment and structure

>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}	Back alignment and structure

>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis}	Back alignment and structure

>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A*	Back alignment and structure

>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1	Back alignment and structure

>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1	Back alignment and structure

>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0	Back alignment and structure

>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}	Back alignment and structure

>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis}	Back alignment and structure

>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1	Back alignment and structure

>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}	Back alignment and structure

>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1	Back alignment and structure

>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1	Back alignment and structure

>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis}	Back alignment and structure

>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1	Back alignment and structure

>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A*	Back alignment and structure

>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp}	Back alignment and structure

>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}	Back alignment and structure

>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	Back alignment and structure

>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}	Back alignment and structure

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1	Back alignment and structure

>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1	Back alignment and structure

>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1	Back alignment and structure

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}	Back alignment and structure

>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1	Back alignment and structure

>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1	Back alignment and structure

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}	Back alignment and structure

>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1	Back alignment and structure

>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A	Back alignment and structure

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}	Back alignment and structure

>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A	Back alignment and structure

>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A*	Back alignment and structure

>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp}	Back alignment and structure

>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*	Back alignment and structure

>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		161
d1ci0a_		205	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	4e-04
d2hq7a1		141	b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Cl	6e-04
d2i02a1		143	b.45.1.1 (A:5-147) General stress protein 26 {Nost	8e-04
d2fhqa1		135	b.45.1.1 (A:3-137) Putative general stress protein	0.004

>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205	Back information, alignment and structure


class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 16/127 (12%), Positives = 44/127 (34%), Gaps = 1/127 (0%)

Query: 4   ICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGS 63
              +     D+      ++   SRK  ++ + P + I +++ +   Q R+ G  + ++  
Sbjct: 49  SRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRE 108

Query: 64  NSDPEKLQIREKSWFGCSMKARLQYLDPE-QGCPSVNEQPKEFSLDPCAGPVDAFCVLIL 122
            S+         S  G     +   +    +      +  + F         D +  L +
Sbjct: 109 TSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRI 168

Query: 123 DPDQVDY 129
            P ++++
Sbjct: 169 VPLEIEF 175

PyMOL of d1ci0a_

>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Length = 141	Back information, alignment and structure

>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Length = 143	Back information, alignment and structure

>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 135	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		161
d1dnla_		199	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch	100.0
d1t9ma_		204	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu	100.0
d1ci0a_		205	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake	100.0
d2a2ja1		201	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco	100.0
d1nrga_		213	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma	100.0
d2hq7a1		141	Hypotheical protein CAC3491 {Clostridium acetobuty	99.77
d2i02a1		143	General stress protein 26 {Nostoc punctiforme pcc	99.75
d2fhqa1		135	Putative general stress protein BT1439 {Bacteroide	99.74
d2asfa1		125	Hypothetical protein Rv2074 {Mycobacterium tubercu	99.0
d1rfea_		160	Hypothetical protein Rv2991 {Mycobacterium tubercu	98.84
d1w9aa_		142	Hypothetical protein Rv1155 {Mycobacterium tubercu	98.8
d1flma_		122	FMN-binding protein {Desulfovibrio vulgaris, strai	98.47
d2hq9a1		148	Hypothetical protein Mll6688 {Mesorhizobium loti [	98.23
d2fg9a1		157	5-nitroimidazole resistance protein BT3078 {Bacter	98.2
d2htia1		156	Hypothetical protein BH0577 {Bacillus halodurans [	98.15
d1vl7a_		135	Hypothetical protein Alr5027 {Cyanobacterium (Nost	98.03
d2vpaa1		194	NimA-related protein DR0842 {Deinococcus radiodura	96.68
d2arza1		238	Hypothetical protein PA4388 {Pseudomonas aeruginos	96.65
d2fura1		193	Hypothetical protein Ta1372 {Thermoplasma acidophi	95.88
d1xhna1		170	Cellular repressor of E1A-stimulated genes CREG1 {	95.3

>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-39  Score=248.28  Aligned_cols=144  Identities=8%  Similarity=0.095  Sum_probs=125.7

Q ss_pred             CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333            1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC   80 (161)
Q Consensus         1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~   80 (161)
                      |++||||||+|+  +++|+||||++|+|+.||++||+|+||||||++++||||+|+|..++++++        .+.|+++
T Consensus        45 P~~RtV~lr~~~--~~g~~F~Tn~~S~K~~el~~Np~asl~f~w~~~~rQiRi~G~~~~~~~~~s--------d~~f~~r  114 (199)
T d1dnla_          45 PYQRIVLLKHYD--EKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEV--------MKYFHSR  114 (199)
T ss_dssp             EEEEEEECCEEE--TTEEEEEEETTSHHHHHHHHCCEEEEEECCGGGTEEEEEEEEEEECCHHHH--------HHHHTTS
T ss_pred             Eecceeehhhcc--cCceEEEecccchhhhhhhcCCceEEEEeecchheeeEEEEEeeecccHHH--------HhHhhcc
Confidence            679999999996  568999999999999999999999999999999999999999999998744        5678999


Q ss_pred             ChhhhhccccCCCCCcCCCCCC-C----c---ccCCCCCCCCCcEEEEEEeeeEEEeEecC---CCcEEEEEEccCCCCC
Q 031333           81 SMKARLQYLDPEQGCPSVNEQP-K----E---FSLDPCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGE  149 (161)
Q Consensus        81 ~~~~r~~~~~~~pg~~~~~~~~-~----~---~~~~~~~~~~~~f~v~~l~p~~ve~l~l~---~h~R~~f~~~~~~~~~  149 (161)
                      +..+|....++.||+++++... .    .   ...+...++|+||+||+|.|++||||+++   .|+|++|++.+     
T Consensus       115 p~~sqi~a~~s~Qs~~i~~~~~l~~~~~~~~~~~~~~~~p~p~~w~g~~l~P~~iEfw~~~~~rlH~R~~y~~~~-----  189 (199)
T d1dnla_         115 PRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQREN-----  189 (199)
T ss_dssp             CHHHHHHHHHCCTTSCCSCTHHHHHHHHHHHHHSTTSSCCCCTTEEEEEECCSEEEEEECCGGGCCEEEEEEECS-----
T ss_pred             CccceeeeeccccccccccHHHHHHHHHHHHhhcccCCCCCCCceEEEEEeccEEEEeCCCCCCCeeEEEEEEcC-----
Confidence            9999999888899999986432 1    0   11233467999999999999999999997   49999999864     


Q ss_pred             CCceEEEccc
Q 031333          150 KYWASLKTSP  159 (161)
Q Consensus       150 ~~W~~~~l~P  159 (161)
                      ++|..++|+|
T Consensus       190 ~~W~~~~L~P  199 (199)
T d1dnla_         190 DAWKIDRLAP  199 (199)
T ss_dssp             SSEEEEECCC
T ss_pred             CcEEEEEecC
Confidence            5799999998

PyMOL of d1dnla_

>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}	Back information, alignment and structure

>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]}	Back information, alignment and structure

>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]}	Back information, alignment and structure

>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}	Back information, alignment and structure

>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure