Citrus Sinensis ID: 031335

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MFIEFCNGNYQQPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccHHHHHHHccccccccccccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccEEEEccccccHHHHHHHHHHcccccEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccHHHHHHEHHHHHHccccHHHHHHcccccccEEEccEEEEEEEccHHHHHHHHHHHHHHHHccccEEcccccccEEEccccHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
mfiefcngnyqqpynlgsqetfgIQISqmallpegttellhhdklllplikcqNVIILTATNVTELDKEWNCLIELLRSgglslmepytskslttnlsdleaAQPLSKlclefpdlhigcyrksrqgpliisfeGKDQARIEAAIESLFKKFHrgafsevv
Flexible Loop (DISEMBL)
MFIEFCNGNYQQPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKfhrgafsevv
Low Complexity Region (SEG)
MFIEFCNGNYQQPYNLGSQETFGIQISQMALLPEGTTEllhhdklllplIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Disordered region (IsUnstruct)
**IEFCNGNYQQPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR*******
Disordered Region (DISOPRED)
MFIEFC*GNYQQPYNLGS**********MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Disordered Region (DISEMBL)
MFIEFCNGNYQQPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Disordered Region (DISPRO)
MFIEFCNGNYQQPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFIEFCNGNYQQPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
225441189	514	PREDICTED: uncharacterized protein LOC10	0.832	0.260	0.748	3e-51
255556898	512	molybdopterin-binding, putative [Ricinus	0.832	0.261	0.711	4e-50
356572474	506	PREDICTED: uncharacterized protein LOC10	0.832	0.264	0.681	4e-47
357510801	502	FAD synthetase [Medicago truncatula] gi|	0.832	0.266	0.674	5e-47
356505260	506	PREDICTED: uncharacterized protein LOC10	0.832	0.264	0.659	4e-45
449440409	512	PREDICTED: uncharacterized protein LOC10	0.832	0.261	0.651	7e-45
297810413	497	phosphoadenosine phosphosulfate reductas	0.826	0.267	0.619	2e-42
14423558	497	putative protein [Arabidopsis thaliana]	0.826	0.267	0.611	3e-42
18414227	497	phosphoadenosine phosphosulfate (PAPS) r	0.826	0.267	0.611	3e-42
297596474	343	Os01g0259600 [Oryza sativa Japonica Grou	0.819	0.384	0.559	6e-35

>gi|225441189|ref|XP_002269812.1| PREDICTED: uncharacterized protein LOC100250368 [Vitis vinifera] gi|297739964|emb|CBI30146.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 114/135 (84%), Gaps = 1/135 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLM 85
           ++MA LPEG TELLHH+KL +PLIKCQNV ILTATNVTELDKEW+CLIEL RS GL  LM
Sbjct: 379 NEMAQLPEGITELLHHEKLSVPLIKCQNVFILTATNVTELDKEWDCLIELTRSSGLLVLM 438

Query: 86  EPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAI 145
           EP+ SK +TTNLSD+EAAQ LSKLC EFPDL+IGCYRKSR  PLIISFEGKDQ R+E+A+
Sbjct: 439 EPFLSKRMTTNLSDVEAAQALSKLCFEFPDLYIGCYRKSRLAPLIISFEGKDQTRLESAV 498

Query: 146 ESLFKKFHRGAFSEV 160
           E+L KKF  G  SE 
Sbjct: 499 EALSKKFPAGQISEA 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556898|ref|XP_002519482.1| molybdopterin-binding, putative [Ricinus communis] gi|223541345|gb|EEF42896.1| molybdopterin-binding, putative [Ricinus communis]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 114/135 (84%), Gaps = 1/135 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLM 85
           ++MALLPEG TELLHHDKL +P+IKCQNVIIL ATN+ ELD+EW CL E  RS GL + M
Sbjct: 377 NEMALLPEGITELLHHDKLPVPMIKCQNVIILAATNIGELDREWECLTEFTRSYGLLATM 436

Query: 86  EPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAI 145
           EP+ +K LTTN+SD+E AQPLSKLCLEFPDL+IG YRKSR G LII+FEGK QARI++A+
Sbjct: 437 EPFAAKRLTTNISDVEIAQPLSKLCLEFPDLNIGVYRKSRNGTLIITFEGKKQARIDSAV 496

Query: 146 ESLFKKFHRGAFSEV 160
           E+L KKFH G FSE+
Sbjct: 497 EALRKKFHPGVFSEM 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572474|ref|XP_003554393.1| PREDICTED: uncharacterized protein LOC100816619 [Glycine max]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 113/135 (83%), Gaps = 1/135 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLM 85
           ++MA LPEG TEL HHDKL +PLIKC+NVIIL+ATNV EL+K+W+C IEL +S  L +L+
Sbjct: 371 NEMAQLPEGITELWHHDKLSVPLIKCENVIILSATNVPELEKQWDCWIELAKSSDLLALL 430

Query: 86  EPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAI 145
           EPY SK +TTNLSD+E AQPLSKLCLEFPDL+IGCYRK+R G LI+SF+GKD  RIE+AI
Sbjct: 431 EPYVSKDVTTNLSDVEIAQPLSKLCLEFPDLYIGCYRKARYGSLIVSFKGKDLTRIESAI 490

Query: 146 ESLFKKFHRGAFSEV 160
           ++L KKF   AF E+
Sbjct: 491 KALHKKFQPSAFVEM 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510801|ref|XP_003625689.1| FAD synthetase [Medicago truncatula] gi|355500704|gb|AES81907.1| FAD synthetase [Medicago truncatula] gi|388512539|gb|AFK44331.1| unknown [Medicago truncatula]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/135 (67%), Positives = 116/135 (85%), Gaps = 1/135 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLM 85
           ++MA LPEG TELLHHD L +PL+KCQNVIIL+AT+++E++K+W+CLIEL +S  L +L+
Sbjct: 367 NEMAQLPEGITELLHHDSLTVPLMKCQNVIILSATDISEMEKQWDCLIELTKSSDLLTLL 426

Query: 86  EPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAI 145
           EP+ SK +TTNLSD+E AQPLSKLCLEFPDL IGCYRK+R G +IISF+GKD AR+E+AI
Sbjct: 427 EPFISKHVTTNLSDVEIAQPLSKLCLEFPDLCIGCYRKARYGSVIISFKGKDPARLESAI 486

Query: 146 ESLFKKFHRGAFSEV 160
           E+L KKF  GAF E+
Sbjct: 487 EALQKKFTSGAFVEM 501

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505260|ref|XP_003521410.1| PREDICTED: uncharacterized protein LOC100795114 [Glycine max]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/135 (65%), Positives = 111/135 (82%), Gaps = 1/135 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLM 85
           ++MA LPEG TEL HHDKL +PLIKC+NVIIL+ATNV E++K+W+C IEL +S  L +L+
Sbjct: 371 NEMAQLPEGITELWHHDKLSVPLIKCENVIILSATNVPEMEKQWDCWIELAKSSDLLALL 430

Query: 86  EPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAI 145
           EPY SK +TT+LSD+E AQPLSKLCLEFPDL+IGCYR +R G LI+SF+GKD  RIE+AI
Sbjct: 431 EPYVSKHVTTSLSDVEIAQPLSKLCLEFPDLYIGCYRNARYGSLIVSFKGKDLTRIESAI 490

Query: 146 ESLFKKFHRGAFSEV 160
           ++L KKF   AF E 
Sbjct: 491 KALQKKFQPSAFIET 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440409|ref|XP_004137977.1| PREDICTED: uncharacterized protein LOC101215823 [Cucumis sativus] gi|449501110|ref|XP_004161280.1| PREDICTED: uncharacterized LOC101215823 [Cucumis sativus]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 88/135 (65%), Positives = 111/135 (82%), Gaps = 1/135 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLM 85
           ++MA LPEG TELLHH+KL +PLIKC NVI+LTATN+TELD +W+CLIEL R+G L  L+
Sbjct: 371 NEMAQLPEGITELLHHEKLPVPLIKCHNVIVLTATNLTELDLQWDCLIELTRTGDLFPLL 430

Query: 86  EPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAI 145
           EPY SK LTT LSD+E A  L+KLCLEFPD+HIGCYR++R GP+IISF+GK++ R + A 
Sbjct: 431 EPYKSKHLTTKLSDVEIAPSLAKLCLEFPDIHIGCYREARSGPIIISFKGKNEERNQLAA 490

Query: 146 ESLFKKFHRGAFSEV 160
           E+L KKF  GAF++ 
Sbjct: 491 EALSKKFQPGAFTDT 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810413|ref|XP_002873090.1| phosphoadenosine phosphosulfate reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297318927|gb|EFH49349.1| phosphoadenosine phosphosulfate reductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 108/134 (80%), Gaps = 1/134 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLME 86
           ++MA LPEG TELLHH+KL +PLIKC+NVI+L ATN  EL+KEW CL EL + GG SL+E
Sbjct: 364 NEMAQLPEGITELLHHEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIE 423

Query: 87  PYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIE 146
            Y+S+ L T+L+D+E A+PLSKL LEFPD+++GCYRKSRQGP+II   GKD ARI++A +
Sbjct: 424 -YSSRRLMTSLTDVEVAEPLSKLGLEFPDIYLGCYRKSRQGPIIICLTGKDNARIDSAAQ 482

Query: 147 SLFKKFHRGAFSEV 160
           +L KKF +  F E+
Sbjct: 483 ALCKKFKKDVFVEI 496

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14423558|gb|AAK62461.1|AF387016_1 putative protein [Arabidopsis thaliana] gi|20148293|gb|AAM10037.1| putative protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 108/134 (80%), Gaps = 1/134 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLME 86
           ++MA LPEG TELLHH+KL +PLIKC+NVI+L ATN  EL+KEW CL EL + GG SL+E
Sbjct: 364 NEMAQLPEGITELLHHEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIE 423

Query: 87  PYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIE 146
            Y+S+ L T+L+D+E A+PLSKL LEFPD+++GCYRKSRQGP+II   GKD AR+++A +
Sbjct: 424 -YSSRRLMTSLTDVEVAEPLSKLGLEFPDIYLGCYRKSRQGPIIICLTGKDNARMDSAAQ 482

Query: 147 SLFKKFHRGAFSEV 160
           +L KKF +  F E+
Sbjct: 483 ALRKKFKKDVFVEI 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414227|ref|NP_568117.1| phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana] gi|7378626|emb|CAB83302.1| putative protein [Arabidopsis thaliana] gi|332003219|gb|AED90602.1| phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 108/134 (80%), Gaps = 1/134 (0%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLME 86
           ++MA LPEG TELLHH+KL +PLIKC+NVI+L ATN  EL+KEW CL EL + GG SL+E
Sbjct: 364 NEMAQLPEGITELLHHEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIE 423

Query: 87  PYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIE 146
            Y+S+ L T+L+D+E A+PLSKL LEFPD+++GCYRKSRQGP+II   GKD AR+++A +
Sbjct: 424 -YSSRRLMTSLTDVEVAEPLSKLGLEFPDIYLGCYRKSRQGPIIICLTGKDNARMDSAAQ 482

Query: 147 SLFKKFHRGAFSEV 160
           +L KKF +  F E+
Sbjct: 483 ALRKKFKKDVFVEI 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297596474|ref|NP_001042640.2| Os01g0259600 [Oryza sativa Japonica Group] gi|56783972|dbj|BAD81409.1| unknown protein [Oryza sativa Japonica Group] gi|56783975|dbj|BAD81430.1| unknown protein [Oryza sativa Japonica Group] gi|255673076|dbj|BAF04554.2| Os01g0259600 [Oryza sativa Japonica Group]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 98/134 (73%), Gaps = 2/134 (1%)

Query: 27  SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLME 86
           ++MALLPEG TELLHH  L LPLIKC+NV+IL ATNV EL+ EW CL++   SG L + +
Sbjct: 208 NEMALLPEGITELLHHKMLPLPLIKCKNVVILAATNVDELETEWGCLLDTQESG-LVMAK 266

Query: 87  PYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIE 146
            + SK L T+L D++ A  ++KLC++F D++IGCYR SR GPL++SF GKD  R+EAA E
Sbjct: 267 SFVSKHLCTSLLDVKIAPVVAKLCIDFSDVYIGCYRISRSGPLVVSFIGKDNQRVEAAAE 326

Query: 147 SLFKKFHRGAFSEV 160
            L   F  G FS+V
Sbjct: 327 KLTNSFE-GQFSQV 339

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2831849	497	AT5G03430 [Arabidopsis thalian	0.826	0.267	0.552	3.1e-35

TAIR|locus:2831849 AT5G03430 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 74/134 (55%), Positives = 98/134 (73%)

Query:    27 SQMALLPEGTTEXXXXXXXXXXXIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLME 86
             ++MA LPEG TE           IKC+NVI+L ATN  EL+KEW CL EL + GG SL+E
Sbjct:   364 NEMAQLPEGITELLHHEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIE 423

Query:    87 PYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIE 146
              Y+S+ L T+L+D+E A+PLSKL LEFPD+++GCYRKSRQGP+II   GKD AR+++A +
Sbjct:   424 -YSSRRLMTSLTDVEVAEPLSKLGLEFPDIYLGCYRKSRQGPIIICLTGKDNARMDSAAQ 482

Query:   147 SLFKKFHRGAFSEV 160
             +L KKF +  F E+
Sbjct:   483 ALRKKFKKDVFVEI 496


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       150   0.00087  104 3  11 22  0.47    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  143 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.58u 0.14s 13.72t   Elapsed:  00:00:01
  Total cpu time:  13.58u 0.14s 13.72t   Elapsed:  00:00:01
  Start:  Fri May 10 22:12:34 2013   End:  Fri May 10 22:12:35 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
COG1058	255	CinA Predicted nucleotide-utilizing enzyme related	99.97
PRK00549	414	competence damage-inducible protein A; Provisional	99.96
PRK03673	396	hypothetical protein; Provisional	99.96
PRK03670	252	competence damage-inducible protein A; Provisional	99.96
TIGR00200	413	cinA_nterm competence/damage-inducible protein Cin	99.93
PRK01215	264	competence damage-inducible protein A; Provisional	99.92
cd00885	170	cinA Competence-damaged protein. CinA is the first	99.59
PF00994	144	MoCF_biosynth: Probable molybdopterin binding doma	93.38
smart00852	135	MoCF_biosynth Probable molybdopterin binding domai	88.11
TIGR00177	144	molyb_syn molybdenum cofactor synthesis domain. Th	84.71

>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]

Probab=99.97  E-value=7.5e-31  Score=213.98  Aligned_cols=138  Identities=23%  Similarity=0.296  Sum_probs=119.7

Q ss_pred             CCCCCCCCCCCCHhhhcccccCCCCceeeeCCCCcccEEEec----eEEEecCCCCch-hHHHHHH-HHHHHHhCCCCCC
Q 031335           12 QPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLM   85 (161)
Q Consensus        12 ~~~~~~~~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~-v~p~L~~~~~~~~   85 (161)
                      ..|...++.+++++|+|||++|+|| ++|+||+|+|||+.++    +||+|||  ||+ |++||+. +.|++... + ..
T Consensus       101 ~~~~~~r~~~~~~~~~K~A~~P~Ga-~~l~NpvG~APG~~v~~~~~~v~~lPG--vP~Em~~M~e~~~~~~l~~~-~-~~  175 (255)
T COG1058         101 EEKYAKRGREMTEANRKQAMLPEGA-EVLDNPVGTAPGFVVEGNGKNVYVLPG--VPSEMKPMFENVLLPLLTGR-F-PS  175 (255)
T ss_pred             HHHHHhcCCCCChhhhhhccCCCCC-EeCCCCCCCCCeeEEecCCeEEEEeCC--CCHHHHHHHHHHHHHHhhcc-C-CC
Confidence            3445567899999999999999999 9999999999999998    7999999  999 9999985 56777664 3 22


Q ss_pred             CcEEEEEEE-ecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEE---EEEEecCHHHHHHHHHHHHHHccC
Q 031335           86 EPYTSKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLI---ISFEGKDQARIEAAIESLFKKFHR  154 (161)
Q Consensus        86 ~~~~~~~l~-~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~---lt~~g~d~~~~~~a~~~l~~~l~~  154 (161)
                      ..+++++++ +|++||.|++.|++++.++++++|+|||+.++...+   |+.+++|++.++++.+++..++.+
T Consensus       176 ~~~~~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~  248 (255)
T COG1058         176 TKYYSRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGEVRLRELVIRAEARDEEEADALLRWLEGRLRA  248 (255)
T ss_pred             CceEEEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCceeccceEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            568899998 799999999999999999999999999999888554   888889999988888888776654

>PRK00549 competence damage-inducible protein A; Provisional

Probab=99.96  E-value=6.8e-29  Score=215.30  Aligned_cols=138  Identities=17%  Similarity=0.183  Sum_probs=119.7

Q ss_pred             CCCCCCHhhhcccccCCCCceeeeCCCCcccEEEec----eEEEecCCCCch-hHHHHHH-HHHHHHhCCCCCCCcEEEE
Q 031335           18 SQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTSK   91 (161)
Q Consensus        18 ~~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~-v~p~L~~~~~~~~~~~~~~   91 (161)
                      ++..++++|+|||++|+|| ++|+||+|||||++++    .+|+|||  ||+ |++||+. ++|+|++. +.....++++
T Consensus       106 ~~~~~~~~n~kqA~~P~ga-~~l~N~~GtApG~~~~~~~~~i~~lPG--vP~Em~~m~~~~v~p~l~~~-~~~~~~~~~~  181 (414)
T PRK00549        106 RGREMTENNRKQALIPEGA-TVLPNPVGTAPGMIIEVDGKTYIVLPG--PPSELKPMFEEYVVPYLSSA-KGTGEVLYSR  181 (414)
T ss_pred             cCCCCChHHHHhhcCCCCC-EECcCCCCcCCeEEEEECCEEEEEeCC--CcHHHHHHHHHHhHHHHHhh-cCCCceEEEE
Confidence            4668999999999999999 9999999999999997    4999999  999 9999985 89999753 2222457788


Q ss_pred             EEE-ecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHH----HHHHHHHHHHccCCceEe
Q 031335           92 SLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARI----EAAIESLFKKFHRGAFSE  159 (161)
Q Consensus        92 ~l~-~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~----~~a~~~l~~~l~~~i~~~  159 (161)
                      .++ +|++||+|++.|.++...++++++|+||+.+.++|+|++++.+++.+    +++.++|++++++++|++
T Consensus       182 ~l~~~gi~Es~l~~~L~~l~~~~~~v~ig~~~~~~~~~vrl~~~~~~~~~~~~~~~~~~~~i~~~lg~~~~~~  254 (414)
T PRK00549        182 VLRFFGIGESQLATTLRDLIDNQTNPTIAPYAKDGEVTLRLTAKARSEEEAEKLIDPLEEEIRDRVGDYFYGY  254 (414)
T ss_pred             EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECccCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHhccceecC
Confidence            887 79999999999999988888999999999877899999999987654    456778899999999974

>PRK03673 hypothetical protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=210.96  Aligned_cols=139  Identities=18%  Similarity=0.124  Sum_probs=119.7

Q ss_pred             CCCCCCCCHhhhcccccCCCCceeeeCCCCcccEEEec----eEEEecCCCCch-hHHHHH-HHHHHHHhCCCCCCCcEE
Q 031335           16 LGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWN-CLIELLRSGGLSLMEPYT   89 (161)
Q Consensus        16 ~~~~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~-~v~p~L~~~~~~~~~~~~   89 (161)
                      ..+++.|+++|+|||++|+|| ++|+||+|||||++++    .+|+|||  ||+ |++||+ .++|+|+.. +.....++
T Consensus       105 ~~~~~~m~~~n~kQA~~P~ga-~~l~N~~GtApG~~~~~~~~~i~~LPG--vP~Emk~M~~~~v~p~L~~~-~~~~~~~~  180 (396)
T PRK03673        105 AERGRVMAPSNRKQAELPASA-EMIDNPVGTACGFALQLNRCLMFFTPG--VPSEFKVMVEQEILPRLRER-FSLPEPPL  180 (396)
T ss_pred             HhcCCCCChhHHhhccCCCCC-eeccCCCccCCcEEEEECCEEEEEECC--ChHHHHHHHHHHHHHHHHhh-cCCCCceE
Confidence            345678999999999999999 9999999999999996    3999999  999 999997 589999764 32223456


Q ss_pred             EEEEE-ecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHccCCceEe
Q 031335           90 SKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSE  159 (161)
Q Consensus        90 ~~~l~-~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~~~i~~~  159 (161)
                      ++.++ +|++||++++.|.++.. .+++++|+|++.++++++|+.++.+.+.++++.++|++++++++|++
T Consensus       181 ~~~l~~~Gi~ES~l~~~l~~l~~-~~~~~i~~~~~~~~v~vrlt~~~~~~~~~~~~~~~i~~~lg~~v~~~  250 (396)
T PRK03673        181 CLRLTTFGRSESDLAQSLDPLPL-PPGVVMGYRSSMPIIELKLTGPASQRQAMEQLWQQVRRVAGQSVIFE  250 (396)
T ss_pred             EEEEEECCCCHHHHHHHHHHHhc-CCCCEEeecCCCCeEEEEEEEccCCHHHHHHHHHHHHHHhCCcEEEe
Confidence            77777 79999999999999852 34899999999988999999999887668889999999999999974

>PRK03670 competence damage-inducible protein A; Provisional

Probab=99.96  E-value=5.1e-28  Score=197.77  Aligned_cols=125  Identities=19%  Similarity=0.210  Sum_probs=109.3

Q ss_pred             CCCCCCHhhhcccccCCCCceeeeCCCCcccEEEec----eEEEecCCCCch-hHHHHHH-HHHHHHhCCCCCCCcEEEE
Q 031335           18 SQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTSK   91 (161)
Q Consensus        18 ~~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~-v~p~L~~~~~~~~~~~~~~   91 (161)
                      .+.+++++|.|||++|+|| ++|+|++|+|||++++    ++|+|||  ||+ |++||+. ++|+|..      .+++++
T Consensus       114 ~~~~~~~~~~kmA~~P~ga-~~l~N~~g~ApG~~~~~~~~~v~~lPG--vP~e~~~M~~~~v~p~l~~------~~~~~~  184 (252)
T PRK03670        114 DDPTLNEARKKMAYLPEGA-EPLENTEGAAPGAYIEHKGTKIFVLPG--MPREMKAMLEKEVLPRLGE------RKFVQK  184 (252)
T ss_pred             cccccChHHHheeCCCCCC-EECCCCCCcCceEEEEECCeEEEEeCC--ChHHHHHHHHHHHHHhhcc------CCeEEE
Confidence            3457899999999999999 9999999999999997    7999999  999 9999985 8998844      235666


Q ss_pred             EEE-ecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335           92 SLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF  152 (161)
Q Consensus        92 ~l~-~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l  152 (161)
                      .+. ++.+||+|++.|++++++++ |+|||||+..+.+++|+++|.|++.++++.+++++..
T Consensus       185 ~~~~~~~~Es~la~~l~~~~~~~~-v~igSyP~~~~~~~~l~~~g~~~~~~~~a~~~l~~~~  245 (252)
T PRK03670        185 KFLAEITDESKLAPILEEALERFN-VKIHSSPKGFGKYIGIIIFAEDEEEIEKAVEFMEERG  245 (252)
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHCC-ceEecCCCCCCCcEEEEEEECCHHHHHHHHHHHHHhC
Confidence            666 68999999999999999995 9999999833457999999999999999999997643

>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain

Probab=99.93  E-value=6.4e-25  Score=190.39  Aligned_cols=139  Identities=16%  Similarity=0.095  Sum_probs=117.5

Q ss_pred             CCCCCCCHhhhcccccCCCCceeeeCCCCcccEEEe-c----eEEEecCCCCch-hHHHHH-HHHHHHHhCCCCCCCcEE
Q 031335           17 GSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKC-Q----NVIILTATNVTE-LDKEWN-CLIELLRSGGLSLMEPYT   89 (161)
Q Consensus        17 ~~~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i-~----~v~~LPG~~vP~-m~~m~~-~v~p~L~~~~~~~~~~~~   89 (161)
                      .++.+++++|.|||++|+|| ++|+|++|+|||+++ .    .|++|||  ||. |++||+ .+.|+|+.. +.....++
T Consensus       105 ~~g~~~~~~n~kqA~~p~ga-~~l~N~~G~APG~~~~~~~~~~i~~LPG--~P~e~~~m~~~~v~p~l~~~-~~~~~~~~  180 (413)
T TIGR00200       105 ETGRVMAPNNRKQALLPAGA-EFLANPVGTAPGMFAVQLNRCLMLFTPG--VPSEFRVMVEHEALPRLRER-FSLPQPIV  180 (413)
T ss_pred             hcCCCCChHHHHhcCCCCCC-EECCCCCCCCCeeEEEecCCEEEEEeCC--CcHHHHHHHHHHhhHHHHHh-cCCCceEE
Confidence            34668999999999999999 999999999999655 2    2788999  999 999998 478999754 32223577


Q ss_pred             EEEEE-ecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHH----HHHHHHHHHHccCCceEe
Q 031335           90 SKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARI----EAAIESLFKKFHRGAFSE  159 (161)
Q Consensus        90 ~~~l~-~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~----~~a~~~l~~~l~~~i~~~  159 (161)
                      ++.++ +|++||++++.|.++...++++++++|++.++++++++.++.+.+..    +++.++|++++++++|++
T Consensus       181 ~~~~~~~Gi~ES~l~~~l~~~~~~~~~~~~~~~~~~~~v~vrl~~~~~~~~~a~~~~~~~~~~i~~~lg~~~~~~  255 (413)
T TIGR00200       181 SLVLRFFGIGESQLEADLADSLDTLTNPTGAPMAYRGEVPLRELKLTGPESEQQRAMEKLWLDIKRVAGQSVIGE  255 (413)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHhcCCCCeEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHhCcceecc
Confidence            88887 79999999999999987778899999999888999999999876543    457889999999999974

cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species

>PRK01215 competence damage-inducible protein A; Provisional

Probab=99.92  E-value=2.9e-24  Score=176.71  Aligned_cols=131  Identities=15%  Similarity=0.190  Sum_probs=108.1

Q ss_pred             CCCCCCCHhhhcccccCCCCceeeeCCCCcccEEEec----eEEEecCCCCch-hHHHHHH-HHHHHHhCCCCCCCcEEE
Q 031335           17 GSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTS   90 (161)
Q Consensus        17 ~~~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~-v~p~L~~~~~~~~~~~~~   90 (161)
                      .++..++++|.|||++|+|| ++|+|+.|||||+++.    .||+|||  ||. |+.||+. +.|+|++.   +...+++
T Consensus       108 ~~~~~~~~~~~k~A~~P~ga-~~l~N~~Gtapg~~~~~~~~~i~~LPG--~P~e~~~m~~~~v~p~l~~~---~~~~~~~  181 (264)
T PRK01215        108 KRGIPLTPERKKMAMMPPGA-VPLENPVGTAPGILIEHGGKDIVALPG--VPREMEAIFENFVEPLLKNR---PPLKYYE  181 (264)
T ss_pred             hcCCCCChhHHheeeCCCCC-EecCCCCCcCCeEEEEECCEEEEEeCC--ChHHHHHHHHHHHHHHHhcc---CCCcEEE
Confidence            35678899999999999999 9999999999999985    4999999  999 9999985 88999753   1245778


Q ss_pred             EEEE-ecCChhHHHHHHHhhhhhCCCcEEEE-----eeecCCccEEEEEEecCHHHH----HHHHHHHHHHcc
Q 031335           91 KSLT-TNLSDLEAAQPLSKLCLEFPDLHIGC-----YRKSRQGPLIISFEGKDQARI----EAAIESLFKKFH  153 (161)
Q Consensus        91 ~~l~-~gi~ES~la~~L~~l~~~~~~v~igs-----yp~~~~~~v~lt~~g~d~~~~----~~a~~~l~~~l~  153 (161)
                      ++++ +|++||++++.|.++..+++++++||     |++.++++|+|++++.+.+.+    +++.+.|++++.
T Consensus       182 ~~~~~~Gi~Es~l~~~l~~l~~~~~~~~~~s~p~~~~~~~~~v~vrl~~~~~~~~~~~~~~~~~~~~i~~~~~  254 (264)
T PRK01215        182 DSILVEGVMESDLAPYVKELVKKYDRVYVKSHPKGYEVSKPILEIQIAGSGEREEEAKVKVEKVLEELKELIK  254 (264)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHhCCCCEEecCccceecCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888 79999999999999988889999954     466666789999988876554    345556666654

>cd00885 cinA Competence-damaged protein

Probab=99.59  E-value=6.5e-16  Score=119.70  Aligned_cols=60  Identities=23%  Similarity=0.288  Sum_probs=54.0

Q ss_pred             CCCCCCCHhhhcccccCCCCceeeeCCCCcccEEEec----eEEEecCCCCch-hHHHHH-HHHHHHHh
Q 031335           17 GSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWN-CLIELLRS   79 (161)
Q Consensus        17 ~~~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~-~v~p~L~~   79 (161)
                      .+...+++++.|||++|+|| ++|.|++|+|||++++    ++|+|||  ||+ |++||+ .+.|+|++
T Consensus       104 ~~~~~~~~~~~r~a~~p~ga-~~i~N~~G~apg~~~~~~~~~i~~lPG--~P~e~~~m~~~~~~~~l~~  169 (170)
T cd00885         104 RRGREMTEANLKQAMLPEGA-TLLPNPVGTAPGFSVEHNGKNVFLLPG--VPSEMKPMLEEEVLPRLRE  169 (170)
T ss_pred             hcCCccChhhhheecCCCCC-EECcCCCCEeeEEEEEeCCeEEEEECC--ChHHHHHHHHHHHHHHHhc
Confidence            34456889999999999999 9999999999999997    6999999  999 999998 68898854

CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.

>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity

Probab=93.38  E-value=0.042  Score=40.75  Aligned_cols=34  Identities=24%  Similarity=0.112  Sum_probs=25.1

Q ss_pred             CCCcccEEEec-----eEEEecCCCCch-hHHHHHHH-HHHHH
Q 031335           43 DKLLLPLIKCQ-----NVIILTATNVTE-LDKEWNCL-IELLR   78 (161)
Q Consensus        43 ~~GtAPG~~i~-----~v~~LPG~~vP~-m~~m~~~v-~p~L~   78 (161)
                      |.++++++.++     .+|.|||  .|. ++.+|+.+ .|.|+
T Consensus       103 p~~~~~~~~~~~~~~~~v~~LPG--~P~~~~~~~~~~v~P~L~  143 (144)
T PF00994_consen  103 PTGLAPGAYLSRKGGKPVFGLPG--NPVAAKVMLEVLVLPLLR  143 (144)
T ss_dssp             TCETEGGGGGTSSETTEEEEE-S--SHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeEEEeeCCCCcEEEEcCC--CHHHHHHHHHHHHHHhcC
Confidence            44567765553     4999999  999 99999864 59885

The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....

>smart00852 MoCF_biosynth Probable molybdopterin binding domain

Probab=88.11  E-value=0.61  Score=34.05  Aligned_cols=44  Identities=16%  Similarity=0.029  Sum_probs=31.8

Q ss_pred             hhcccccCCCCceeeeCCCCcccEEEeceEEEecCCCCch-hHHHHH
Q 031335           26 ISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTE-LDKEWN   71 (161)
Q Consensus        26 ~~rqA~vPega~~~l~N~~GtAPG~~i~~v~~LPG~~vP~-m~~m~~   71 (161)
                      ..++++.|-+.+.+..|+.+.++|+.-+.|+.|||  .|. +..+|+
T Consensus        89 ~~~~~~~Pg~~~~~~~~~~~~~~g~~~~~i~~LPG--~P~~~~~~~~  133 (135)
T smart00852       89 GFGEAMRPGGAPTVLANLSGTAPGFRGKLVFGLPG--SPVAARAMLE  133 (135)
T ss_pred             ChhhhhcccCCccccccccCcCCeEeCcEEEECCC--CHHHHHHHHH
Confidence            35678888766233347788888875346999999  998 877664

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.

>TIGR00177 molyb_syn molybdenum cofactor synthesis domain

Probab=84.71  E-value=1.2  Score=33.11  Aligned_cols=32  Identities=6%  Similarity=-0.174  Sum_probs=24.7

Q ss_pred             eeeCCCCcccEEEec--eEEEecCCCCch-hHHHHHH
Q 031335           39 LLHHDKLLLPLIKCQ--NVIILTATNVTE-LDKEWNC   72 (161)
Q Consensus        39 ~l~N~~GtAPG~~i~--~v~~LPG~~vP~-m~~m~~~   72 (161)
                      +.-+|-+++.+..++  -|+.|||  .|. ...+|+.
T Consensus       106 ~~~~PG~~~~~~~~~~~~v~~LPG--~P~aa~~~~~~  140 (144)
T TIGR00177       106 VLSRPGKPATAGVRGGTLIFGLPG--NPVSALVTFEV  140 (144)
T ss_pred             hhCCCCCceEEEEECCEEEEECCC--CHHHHHHHHHH
Confidence            356777777777776  3999999  998 8888864

The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	99.68
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	95.93
1uuy_A	167	CNX1, molybdopterin biosynthesis CNX1; chelatase,	94.35
2pbq_A	178	Molybdenum cofactor biosynthesis MOG; molybdopteri	90.6
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	89.96
2is8_A	164	Molybdopterin biosynthesis enzyme, MOAB; globular	89.86
2g2c_A	167	Putative molybdenum cofactor biosynthesis protein;	86.38
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	81.97

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=99.68  E-value=2.7e-17  Score=126.70  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=51.4

Q ss_pred             CCCCCHhhhcccccCCCCceeeeCCCCcccEEEec----eEEEecCCCCch-hHHHHHHHHHHHH
Q 031335           19 QETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNCLIELLR   78 (161)
Q Consensus        19 ~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~v~p~L~   78 (161)
                      +.+++++|+|||++|+|| ++|+|++|+|||++++    +||+|||  ||+ |++||+.+.|.|.
T Consensus       108 ~~~~~~~~~k~A~~P~ga-~~l~N~~g~apG~~~~~~~~~v~~lPG--vP~e~~~m~~~~~~~~~  169 (172)
T 3kbq_A          108 QADLTPQRLKMAKIPPSC-RPIENPVGTAPGLICAVGGKKVIILPG--VPKEMEALLKAMEKDII  169 (172)
T ss_dssp             ---CCHHHHGGGEECTTE-EEECCSSSSSCEEEEEETTEEEEEECS--SHHHHHHHHHHTHHHHC
T ss_pred             CCCCChHHHhhccCCCCC-EECcCCCCcCCeEEEEECCeEEEEeCC--CHHHHHHHHHHHHhhcC
Confidence            568999999999999999 9999999999999996    6999999  999 9999999999873

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=95.93  E-value=0.0028  Score=47.69  Aligned_cols=47  Identities=6%  Similarity=-0.003  Sum_probs=32.6

Q ss_pred             hhcccccCCCCceeeeCCCCcccEEEeceEEEecCCCCch-hHHHHH-HHHHHHH
Q 031335           26 ISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTE-LDKEWN-CLIELLR   78 (161)
Q Consensus        26 ~~rqA~vPega~~~l~N~~GtAPG~~i~~v~~LPG~~vP~-m~~m~~-~v~p~L~   78 (161)
                      ..|++..+.+| .+..|..|++.|-   .||.|||  +|. |+.||+ .++|.|.
T Consensus       122 ~~~~~~~~~~a-~~~~~~~G~~~~~---~i~~LPG--~P~~~~~~~~~~v~P~L~  170 (178)
T 3iwt_A          122 SFNDPEVKAAA-YLTKASAGIIGKK---IVYLLPG--SPDAVKLALKELILPEVG  170 (178)
T ss_dssp             HHTSTTTGGGG-GGCCCEEEEETTE---EEEEECS--CHHHHHHHHHHTHHHHHH
T ss_pred             Hhccccccccc-cccccceeeECCE---EEEECCC--CHHHHHHHHHHHHHHHHH
Confidence            34566667777 5555544544332   3899999  999 999997 5788874

>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A

Probab=94.35  E-value=0.01  Score=44.35  Aligned_cols=50  Identities=12%  Similarity=0.153  Sum_probs=36.3

Q ss_pred             hcccccCCCCceeeeCCCC--cccEEEec-eEEEecCCCCch-hHHHHHHHHHHHHh
Q 031335           27 SQMALLPEGTTELLHHDKL--LLPLIKCQ-NVIILTATNVTE-LDKEWNCLIELLRS   79 (161)
Q Consensus        27 ~rqA~vPega~~~l~N~~G--tAPG~~i~-~v~~LPG~~vP~-m~~m~~~v~p~L~~   79 (161)
                      .++++++.|. .+.+|..+  +++|+.=+ -||.|||  .|. +..+|+.++|.|+.
T Consensus       104 ~~~~~~~~g~-~~~Pg~~~sr~~~G~~~~~~v~~LPG--~P~s~~~~~~~~~P~L~~  157 (167)
T 1uuy_A          104 LLFVMMQESL-KITPFAMLARSAAGIRGSTLIINMPG--NPNAVAECMEALLPALKH  157 (167)
T ss_dssp             HHHHHHHHHH-HHCGGGGGCCCCEEEETTEEEEEECS--STTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-ccCCCCcccceeEEEECCEEEEECCC--CHHHHHHHHHHHHHHHHH
Confidence            3455677777 77776654  68887322 3899999  998 99999876787753

>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A

Probab=90.60  E-value=0.27  Score=36.92  Aligned_cols=34  Identities=9%  Similarity=0.014  Sum_probs=26.3

Q ss_pred             CCCCcccEEEec--eEEEecCCCCch-hHHHHHHH---HHHHHh
Q 031335           42 HDKLLLPLIKCQ--NVIILTATNVTE-LDKEWNCL---IELLRS   79 (161)
Q Consensus        42 N~~GtAPG~~i~--~v~~LPG~~vP~-m~~m~~~v---~p~L~~   79 (161)
                      ++.|+| |+ ..  .||.|||  .|. ++.||+.+   +|+|..
T Consensus       118 lsrg~a-g~-~~~~~v~~LPG--~P~~~~~~~~~~~~v~p~l~~  157 (178)
T 2pbq_A          118 LSRQTA-GI-RGSCLIVNLPG--KPQSIKVCLDAVMPAIPYCID  157 (178)
T ss_dssp             GCCCCE-EE-ETTEEEEEECS--SHHHHHHHHHHHGGGHHHHHH
T ss_pred             ccccee-ee-ECCEEEEECCC--CHHHHHHHHHHHHHHHHHHHH
Confidence            356777 66 34  4999999  999 99999864   888865

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=89.96  E-value=0.26  Score=36.55  Aligned_cols=42  Identities=10%  Similarity=0.056  Sum_probs=29.4

Q ss_pred             CCCCceeeeCCCCcccEEEec-eEEEecCCCCch-hHHHHH-HHHHHHHh
Q 031335           33 PEGTTELLHHDKLLLPLIKCQ-NVIILTATNVTE-LDKEWN-CLIELLRS   79 (161)
Q Consensus        33 Pega~~~l~N~~GtAPG~~i~-~v~~LPG~~vP~-m~~m~~-~v~p~L~~   79 (161)
                      ..|. ..+ +..++| |+.-+ .||.|||  .|. ++.||+ .+.|+|+.
T Consensus       117 ~pG~-~~~-~~r~~a-G~~~~~~v~~LPG--~P~~~~~~~~~~v~p~L~~  161 (169)
T 1y5e_A          117 DIGS-SAM-LSRAIG-GTIGRKVVFSMPG--SSGAVRLAMNKLILPELGH  161 (169)
T ss_dssp             SSGG-GGG-GCCCEE-EEETTEEEEEECS--SHHHHHHHHHHTHHHHHHH
T ss_pred             CCCc-cee-ccccee-EEECCEEEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence            3455 333 455666 76432 4999999  999 999998 57888753

>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A

Probab=89.86  E-value=0.21  Score=36.94  Aligned_cols=23  Identities=9%  Similarity=0.213  Sum_probs=19.3

Q ss_pred             eEEEecCCCCch-hHHHHHHHHHHHH
Q 031335           54 NVIILTATNVTE-LDKEWNCLIELLR   78 (161)
Q Consensus        54 ~v~~LPG~~vP~-m~~m~~~v~p~L~   78 (161)
                      .||.|||  .|. +..||+.++|+|+
T Consensus       124 ~v~~LPG--~P~~~~~~~~~v~p~l~  147 (164)
T 2is8_A          124 LILNLPG--SPKGARESLEAVLPVLP  147 (164)
T ss_dssp             EEEEECS--SHHHHHHHHHHHGGGHH
T ss_pred             EEEECCC--CHHHHHHHHHHHHHHHH
Confidence            4999999  998 9999987777664

>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1

Probab=86.38  E-value=0.3  Score=36.15  Aligned_cols=23  Identities=4%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             eEEEecCCCCch-hHHHHHHHHHHHH
Q 031335           54 NVIILTATNVTE-LDKEWNCLIELLR   78 (161)
Q Consensus        54 ~v~~LPG~~vP~-m~~m~~~v~p~L~   78 (161)
                      .||.|||  .|. ++.||+.+.|.|+
T Consensus       135 ~v~~LPG--~P~~~~~~~~~v~P~L~  158 (167)
T 2g2c_A          135 LIVNAPS--SSGGITDTWAVISPVIP  158 (167)
T ss_dssp             EEEEECS--SHHHHHHHHHHHGGGHH
T ss_pred             EEEECCC--CHHHHHHHHHHHHHHHH
Confidence            4899999  999 9999996677774

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=81.97  E-value=0.77  Score=34.15  Aligned_cols=24  Identities=13%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             eEEEecCCCCch-hHHHHHH-HHHHHHh
Q 031335           54 NVIILTATNVTE-LDKEWNC-LIELLRS   79 (161)
Q Consensus        54 ~v~~LPG~~vP~-m~~m~~~-v~p~L~~   79 (161)
                      .||.|||  .|. ++.||+. +.|+|+.
T Consensus       132 ~v~~LPG--~P~~~~~~~~~~v~p~L~~  157 (172)
T 1mkz_A          132 LILAMPG--STKACRTAWENIIAPQLDA  157 (172)
T ss_dssp             EEEEECS--SHHHHHHHHHHTHHHHHCT
T ss_pred             EEEECCC--CHHHHHHHHHHHHHHHHhh
Confidence            4899999  999 9999985 7899864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1wjwa_	112	Phosphoacetylglucosamine mutase {Mouse (Mus muscul	89.42
d1uuya_	161	Plant CNX1 G domain {Mouse-ear cress (Arabidopsis	83.37
d1jlja_	169	Gephyrin N-terminal domain {Human (Homo sapiens) [	80.99

>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Phosphoglucomutase, C-terminal domain
family: Phosphoglucomutase, C-terminal domain
domain: Phosphoacetylglucosamine mutase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.42  E-value=0.81  Score=30.44  Aligned_cols=53  Identities=6%  Similarity=-0.021  Sum_probs=42.5

Q ss_pred             HHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335          101 EAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH  153 (161)
Q Consensus       101 ~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~  153 (161)
                      .+.+.+..+...+++-.+-..|+..+.-+|+.+++.+++.+++..+.+.+.+.
T Consensus        42 ~lq~~Idgi~~~~~~grvlIRpSGTEp~iRi~vEa~~~~~~~~i~~~i~~lv~   94 (112)
T d1wjwa_          42 GLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVF   94 (112)
T ss_dssp             THHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCceEEEEEeCCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Confidence            35677777777788888888898777789999999999988888777776654

>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Plant CNX1 G domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.37  E-value=0.44  Score=33.42  Aligned_cols=22  Identities=14%  Similarity=0.280  Sum_probs=19.1

Q ss_pred             EEEecCCCCch-hHHHHHHHHHHHH
Q 031335           55 VIILTATNVTE-LDKEWNCLIELLR   78 (161)
Q Consensus        55 v~~LPG~~vP~-m~~m~~~v~p~L~   78 (161)
                      ||.|||  .|. ++.+|+.++|.|.
T Consensus       132 if~LPG--~P~a~~~~l~~i~p~l~  154 (161)
T d1uuya_         132 IINMPG--NPNAVAECMEALLPALK  154 (161)
T ss_dssp             EEEECS--STTHHHHHHHHHHHHHH
T ss_pred             EEECCC--CHHHHHHHHHHHHHHHH
Confidence            899999  999 9899988877764

>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Gephyrin N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.99  E-value=0.32  Score=33.95  Aligned_cols=22  Identities=14%  Similarity=0.223  Sum_probs=17.8

Q ss_pred             eEEEecCCCCch-hHHHHHHHHHHH
Q 031335           54 NVIILTATNVTE-LDKEWNCLIELL   77 (161)
Q Consensus        54 ~v~~LPG~~vP~-m~~m~~~v~p~L   77 (161)
                      -||.|||  +|. ++.||+.++|.+
T Consensus       128 ~i~~LPG--~P~~~~~~~~~vlP~l  150 (169)
T d1jlja_         128 LIINLPG--SKKGSQECFQFILPAL  150 (169)
T ss_dssp             EEEEECS--SHHHHHHHHHHHGGGH
T ss_pred             eEEECCC--CHHHHHHHHHHHHHhH
Confidence            3889999  998 989998765544