Citrus Sinensis ID: 031341

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHcccccccccEEEccHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccHccccccccEEEEccccccccccEEEEEcccccHHHHHHHHHHcccccEEEEEEEcccccccHHHHccccccccccEcccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccHcccc
Coil and Loop (DISEMBL)
matlgcqfhcrmhhisqnvkakrfiscstnppqsniKVIINGAVKEIGRAAVIAVTKARGMEvagaidshsvgedigmvcdmeqpleipvmSDLTMVLGSISQSKARAVVIDftdastvydnVKQATAFGMRSVVYVPHIQLETVSALSAFcdkasmvstg
Flexible Loop (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG
Low Complexity Region (SEG)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG
Disordered region (IsUnstruct)
***LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD********
Disordered Region (DISOPRED)
*************************************VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS**
Disordered Region (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG
Disordered Region (DISPRO)
*ATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q9FJ82	298	Putative 4-hydroxy-tetrah	yes	no	0.950	0.513	0.710	6e-58
B8HRK9	275	4-hydroxy-tetrahydrodipic	yes	no	0.770	0.450	0.409	2e-19
P72642	275	4-hydroxy-tetrahydrodipic	N/A	no	0.763	0.447	0.404	8e-19
B2J0A9	278	4-hydroxy-tetrahydrodipic	yes	no	0.763	0.442	0.372	7e-18
Q8YU19	278	4-hydroxy-tetrahydrodipic	yes	no	0.770	0.446	0.375	8e-18
Q3MFY8	278	4-hydroxy-tetrahydrodipic	yes	no	0.770	0.446	0.367	1e-17
B7KBV6	275	4-hydroxy-tetrahydrodipic	yes	no	0.763	0.447	0.380	4e-17
Q10YI1	275	4-hydroxy-tetrahydrodipic	yes	no	0.770	0.450	0.370	2e-16
Q9S3W8	278	4-hydroxy-tetrahydrodipic	N/A	no	0.770	0.446	0.351	2e-16
B7JW41	275	4-hydroxy-tetrahydrodipic	yes	no	0.757	0.443	0.392	3e-16

>sp|Q9FJ82|DAPB3_ARATH Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1

 Score =  223 bits (567), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/159 (71%), Positives = 132/159 (83%), Gaps = 6/159 (3%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+M
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATM 155

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 6

>sp|B8HRK9|DAPB_CYAP4 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapB PE=3 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 3/127 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I VI+NGA  ++GR  V AV +A  + + GA+D +    G+DIG V  +  PLE+P+
Sbjct: 4   QGAIPVIVNGAAGKMGREVVKAVAQAADLTLFGAVDRNPSLQGQDIGEVVGI-GPLEVPL 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L + +Q     V++DFT  ++VYDNV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LADLQSLLVAAAQEPQAGVMVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLAT 122

Query: 151 FCDKASM 157
           F DKASM
Sbjct: 123 FADKASM 129

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1

 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 3/126 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I V++NGA  ++GR  + AV +A  +++ GA+D +    G+DIG V  +  PLE+PV
Sbjct: 4   QDLIPVVVNGAAGKMGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIA-PLEVPV 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  VL   +Q K + V++DFT  S VYDNV+ A A+G+R VV    +  + +  L  
Sbjct: 63  LADLQSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGD 122

Query: 151 FCDKAS 156
           F +KAS
Sbjct: 123 FAEKAS 128

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2J0A9|DAPB_NOSP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 6/129 (4%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDMEQPLEIP 89
           Q+ I VI+NGA  ++GR  + AV +A  + + GAID HS+    +D G +  + +PLE+P
Sbjct: 4   QAPIPVIVNGAAGKMGREVIKAVAQAPDLNLVGAID-HSLEHQDKDAGELAGLSEPLEVP 62

Query: 90  VMSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
           + + L  +LG ++  +     V++DFT   +VYDN++ A A+G+R VV    +  E +  
Sbjct: 63  ITNQLEPMLGYVAGDRQSPPGVIVDFTHPDSVYDNIRSAIAYGIRPVVGTTGLSPEQIQD 122

Query: 148 LSAFCDKAS 156
           L+ F DKAS
Sbjct: 123 LADFADKAS 131

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8YU19|DAPB_NOSS1 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dapB PE=3 SV=1

 Score = 89.7 bits (221), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 4/128 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V AV +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAVAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKAS 156
           + F +KAS
Sbjct: 124 ADFAEKAS 131

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q3MFY8|DAPB_ANAVT 4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 4/128 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V A+ +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKAS 156
           + F +KAS
Sbjct: 124 ADFAEKAS 131

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7424) GN=dapB PE=3 SV=1

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 3/126 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           +S I V++NGA  ++G+  + AV++A  M + GA+D +    GED G V     P+E+P+
Sbjct: 4   ESPIPVVVNGAAGKMGKEVIKAVSQAEDMMLVGAVDLNPKYRGEDAGEVAGC-GPVEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           + DL  VL   +Q K + V++DFT    VYDN++ A A+G+R VV    +  E +  L  
Sbjct: 63  LDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGE 122

Query: 151 FCDKAS 156
           F +KAS
Sbjct: 123 FAEKAS 128

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q10YI1|DAPB_TRIEI 4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=dapB PE=3 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 3/127 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SHSVGEDIGMVCDMEQPLEIPV 90
           Q++  VI+ GA  ++GR  +  V  A  M + GAI+     +G+DIG +     PLE+P+
Sbjct: 4   QTSTPVIVCGAAGKMGREVIKTVANASDMTLLGAIECQPEYIGQDIGELIG-SGPLEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L   +Q K  AV++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LNDLQGILVMAAQEKQPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAE 122

Query: 151 FCDKASM 157
           F +KAS+
Sbjct: 123 FAEKASI 129

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9S3W8|DAPB_MASLA 4-hydroxy-tetrahydrodipicolinate reductase OS=Mastigocladus laminosus GN=dapB PE=3 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 4/128 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  + AV +A  M + GA+D++    G+D G V  + +P E+P+
Sbjct: 4   QTPIPVIVNGAAGKMGRETIKAVVQAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
              L  +L  ++  +     V++DFT    VYDNV+ A A+G+R VV    +  + +  L
Sbjct: 64  TDQLEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQL 123

Query: 149 SAFCDKAS 156
           + F +KAS
Sbjct: 124 ADFAEKAS 131

Mastigocladus laminosus (taxid: 83541)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7JW41|DAPB_CYAP8 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 8801) GN=dapB PE=3 SV=1

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 3/125 (2%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM 91
           S I V++NGA  ++GR  V AV +A  M + GA+D +    G+D+G V      LE+P++
Sbjct: 5   SLIPVVVNGAAGKMGREVVKAVAQAEDMMLVGAVDYNPNYRGQDVGEVAGC-GALEVPIV 63

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL  +L   +Q K + V++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ F
Sbjct: 64  DDLQSILVLATQEKIQGVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLTEEQLKDLADF 123

Query: 152 CDKAS 156
            DKAS
Sbjct: 124 ADKAS 128

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224136862	300	predicted protein [Populus trichocarpa]	0.975	0.523	0.770	7e-66
357444057	173	Dihydrodipicolinate reductase [Medicago	1.0	0.930	0.731	5e-62
449533660	189	PREDICTED: putative dihydrodipicolinate	1.0	0.851	0.720	1e-61
217073426	173	unknown [Medicago truncatula] gi|3884995	1.0	0.930	0.725	2e-61
356575925	301	PREDICTED: putative dihydrodipicolinate	0.975	0.521	0.729	3e-61
357444055	302	Dihydrodipicolinate reductase [Medicago	0.975	0.519	0.731	1e-60
255539549	300	dihydrodipicolinate reductase, putative	0.975	0.523	0.713	1e-60
225455455	302	PREDICTED: putative dihydrodipicolinate	0.968	0.516	0.732	5e-60
449446063	300	PREDICTED: putative dihydrodipicolinate	0.975	0.523	0.713	2e-59
297741105	303	unnamed protein product [Vitis vinifera]	0.968	0.514	0.727	1e-58

>gi|224136862|ref|XP_002322434.1| predicted protein [Populus trichocarpa] gi|222869430|gb|EEF06561.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 136/157 (86%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C FH  +H +S+NV  + FISCS  P QSNIKV+INGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHFHFTVHKVSKNVITRPFISCSMQPSQSNIKVVINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG +CDME+PLEIP+++DLTMVLGSISQSK   VV+DFTD STVY
Sbjct: 61  MEVAGAVDSHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVVDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           DNVKQATAFGMRSVVYVP I+L++V ALSAFCDKASM
Sbjct: 121 DNVKQATAFGMRSVVYVPRIKLDSVGALSAFCDKASM 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444057|ref|XP_003592306.1| Dihydrodipicolinate reductase [Medicago truncatula] gi|355481354|gb|AES62557.1| Dihydrodipicolinate reductase [Medicago truncatula]

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 138/164 (84%), Gaps = 3/164 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSISQSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASMVS G
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMVSKG 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533660|ref|XP_004173790.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/161 (72%), Positives = 135/161 (83%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MATLGCQF   ++  S+  +    I CS  P Q NIKVIINGA KEIGRAAVIAVTKARG
Sbjct: 1   MATLGCQFPFTVYKNSKKKRPGSSILCSVQPSQGNIKVIINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG VCDME+PLE+P+++DLTMVLGSISQSK   VV+DFT+ S VY
Sbjct: 61  MEVAGAVDSHCVGEDIGKVCDMEEPLELPILNDLTMVLGSISQSKETGVVVDFTEPSKVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161
           +NVKQATAFGMRSVVYVP ++++TV+ALS FC+KASMVSTG
Sbjct: 121 ENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASMVSTG 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073426|gb|ACJ85072.1| unknown [Medicago truncatula] gi|388499538|gb|AFK37835.1| unknown [Medicago truncatula]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/164 (72%), Positives = 137/164 (83%), Gaps = 3/164 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSI QSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSIPQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASMVS G
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMVSKG 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575925|ref|XP_003556086.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 136/159 (85%), Gaps = 2/159 (1%)

Query: 1   MATLGCQFHCRMHHISQNV--KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQFH      S+NV  + KRFI CS  P Q+NIKV+INGA KEIGRAAV+AVTKA
Sbjct: 1   MASLSCQFHSTSLLNSKNVNRRRKRFIFCSAQPTQNNIKVVINGATKEIGRAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  VGEDIG +C ME+PLEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHVGEDIGKICGMEEPLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFCDKASM
Sbjct: 121 VYDNVKQATAFGMKSVVYVPQIKLDTVAALSAFCDKASM 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444055|ref|XP_003592305.1| Dihydrodipicolinate reductase [Medicago truncatula] gi|355481353|gb|AES62556.1| Dihydrodipicolinate reductase [Medicago truncatula]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 135/160 (84%), Gaps = 3/160 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSISQSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASM
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASM 160

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539549|ref|XP_002510839.1| dihydrodipicolinate reductase, putative [Ricinus communis] gi|223549954|gb|EEF51441.1| dihydrodipicolinate reductase, putative [Ricinus communis]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 132/157 (84%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C     +     NVKAK FI CS  P +SNIKV++NGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHLQFTVSKGCSNVKAKPFIFCSAQPAKSNIKVVVNGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+D+H VGED+G++CDME+PLEIPV++DLTMVLGSISQSK   VVIDFTD STVY
Sbjct: 61  MEVAGAVDTHFVGEDVGLLCDMEEPLEIPVINDLTMVLGSISQSKETGVVIDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           DNVKQATAFGM+S+VYVP I+++T++ALSA C+KASM
Sbjct: 121 DNVKQATAFGMKSIVYVPRIKVDTIAALSALCEKASM 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455455|ref|XP_002274702.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic [Vitis vinifera] gi|147816661|emb|CAN68386.1| hypothetical protein VITISV_012454 [Vitis vinifera]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 133/157 (84%), Gaps = 1/157 (0%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQSKA  VV+DFTD STVY
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQSKATGVVVDFTDPSTVY 122

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           +NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASM
Sbjct: 123 ENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASM 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446063|ref|XP_004140791.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 131/157 (83%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MATLGCQF   ++  S+  +    I CS  P Q NIKVIINGA KEIGRAAVIAVTKARG
Sbjct: 1   MATLGCQFPFTVYKNSKKKRPGSSILCSVQPSQGNIKVIINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG VCDME+PLE+P+++DLTMVLGSISQSK   VV+DFT+ S VY
Sbjct: 61  MEVAGAVDSHCVGEDIGKVCDMEEPLELPILNDLTMVLGSISQSKETGVVVDFTEPSKVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           +NVKQATAFGMRSVVYVP ++++TV+ALS FC+KASM
Sbjct: 121 ENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741105|emb|CBI31836.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 133/158 (84%), Gaps = 2/158 (1%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARAVVIDFTDASTV 119
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSIS QSKA  VV+DFTD STV
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQQSKATGVVVDFTDPSTV 122

Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           Y+NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASM
Sbjct: 123 YENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASM 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2173043	298	CRR1 "chlororespiration reduct	0.925	0.5	0.728	8e-53

TAIR|locus:2173043 CRR1 "chlororespiration reduction 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 110/151 (72%), Positives = 129/151 (85%)

Query:     9 HCRMHHISQNVKAKR-FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66
             +C    +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKARGME+AGA
Sbjct:     5 NCHFFQLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKARGMELAGA 64

Query:    67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA 126
             +D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD STVY+NVKQA
Sbjct:    65 VDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTVYENVKQA 124

Query:   127 TAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
             TAFGM+SVVYVP I+ ETVSALSA CDKA+M
Sbjct:   125 TAFGMKSVVYVPRIKPETVSALSALCDKATM 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.130   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       161   0.00074  107 3  11 22  0.46    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.32u 0.12s 14.44t   Elapsed:  00:00:01
  Total cpu time:  14.32u 0.12s 14.44t   Elapsed:  00:00:01
  Start:  Fri May 10 22:20:07 2013   End:  Fri May 10 22:20:08 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=IMP

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJ82	DAPB3_ARATH	1, ., 3, ., 1, ., 2, 6	0.7106	0.9503	0.5134	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
TIGR00036	266	TIGR00036, dapB, dihydrodipicolinate reductase	5e-14
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	8e-11
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	6e-10
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	2e-09

>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 10/125 (8%)

Query: 35  NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVM 91
            IKV + GA   +GR  + A   A G+++  A + H     G D G +  +   + +PV 
Sbjct: 1   TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVT 59

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL       +      V+IDFT    V +++K A   G+R VV       E    L+  
Sbjct: 60  DDLE------AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADL 113

Query: 152 CDKAS 156
            +KA 
Sbjct: 114 AEKAG 118

[Amino acid biosynthesis, Aspartate family]. Length = 266

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 55.7 bits (135), Expect = 8e-11
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPVMS 92
           IKV + GA   +GR  + A+ +A   E+  A+D   S  +G D G +        +PV  
Sbjct: 1   IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL---GVPVTD 57

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
           DL  VL          V+IDFT      +N++ A   G   V+
Sbjct: 58  DLEEVLADAD------VLIDFTTPEATLENLELALKHGKPLVI 94

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 10/105 (9%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S IKV + GA   +GR  + AV +A  +E+  A D   S S+G D G +  +   L +PV
Sbjct: 1   SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPV 59

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
             DL +V           V+IDFT      +N++ A   G   V+
Sbjct: 60  TDDLLLVK------ADADVLIDFTTPEATLENLEFALEHGKPLVI 98

Length = 266

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           IKV + GA   +GR  + AV  A  +E+  A+D                   + +  DL 
Sbjct: 2   IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALG------VAITDDLE 55

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
            VL          V+IDFT      +N++ A   G   V+
Sbjct: 56  AVLADAD------VLIDFTTPEATLENLEFALEHGKPLVI 89

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	99.97
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	99.95
TIGR00036	266	dapB dihydrodipicolinate reductase.	99.92
PLN02775	286	Probable dihydrodipicolinate reductase	99.91
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	99.9
PRK00048	257	dihydrodipicolinate reductase; Provisional	99.89
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.76
PRK13303	265	L-aspartate dehydrogenase; Provisional	99.7
COG0673	342	MviM Predicted dehydrogenases and related proteins	99.65
PRK11579	346	putative oxidoreductase; Provisional	99.63
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	99.57
PRK10206	344	putative oxidoreductase; Provisional	99.56
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	99.56
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.54
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	99.5
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.46
PRK06270	341	homoserine dehydrogenase; Provisional	99.45
PRK06349	426	homoserine dehydrogenase; Provisional	99.4
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	99.4
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	99.36
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.32
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	99.25
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.23
PRK08374	336	homoserine dehydrogenase; Provisional	99.22
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	99.2
PRK08300	302	acetaldehyde dehydrogenase; Validated	99.18
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	99.18
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	99.09
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	99.08
PRK06392	326	homoserine dehydrogenase; Provisional	99.02
COG3804	350	Uncharacterized conserved protein related to dihyd	99.01
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	98.93
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	98.77
PRK06813	346	homoserine dehydrogenase; Validated	98.77
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.74
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	98.73
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	98.71
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.67
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	98.66
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.65
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	98.63
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	98.63
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.63
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	98.61
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	98.59
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	98.58
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	98.58
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	98.58
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	98.58
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.58
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	98.52
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	98.5
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	98.5
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	98.46
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.46
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	98.43
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.41
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	98.38
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.38
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.37
PLN02383	344	aspartate semialdehyde dehydrogenase	98.37
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.36
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.34
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	98.31
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.31
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	98.29
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	98.28
PLN02700	377	homoserine dehydrogenase family protein	98.27
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.25
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	98.24
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.23
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	98.23
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.21
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	98.2
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.19
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	98.17
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.15
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	98.15
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.14
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.14
PLN02688	266	pyrroline-5-carboxylate reductase	98.14
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	98.11
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	98.08
COG2344	211	AT-rich DNA-binding protein [General function pred	98.06
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.04
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	98.01
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	98.0
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.99
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	97.99
PRK07680	273	late competence protein ComER; Validated	97.99
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	97.97
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	97.97
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	97.96
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	97.96
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	97.93
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	97.92
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.92
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.9
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	97.9
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.9
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.88
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.88
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.88
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.86
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.83
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	97.8
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.78
PLN02256	304	arogenate dehydrogenase	97.75
COG2910	211	Putative NADH-flavin reductase [General function p	97.72
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.7
PLN02712	667	arogenate dehydrogenase	97.69
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.68
PLN02712	667	arogenate dehydrogenase	97.66
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.64
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.63
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.63
PRK08618	325	ornithine cyclodeaminase; Validated	97.61
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.61
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.61
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	97.57
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.54
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.54
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.53
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.53
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	97.52
PRK08655	437	prephenate dehydrogenase; Provisional	97.5
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	97.5
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	97.49
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.44
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.41
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	97.39
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.37
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.36
COG3367	339	Uncharacterized conserved protein [Function unknow	97.36
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.36
CHL00194	317	ycf39 Ycf39; Provisional	97.35
PRK09414	445	glutamate dehydrogenase; Provisional	97.35
PRK07417	279	arogenate dehydrogenase; Reviewed	97.31
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.3
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.27
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	97.25
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.25
PRK08223	287	hypothetical protein; Validated	97.25
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.24
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.24
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.24
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	97.22
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.21
PLN02858	1378	fructose-bisphosphate aldolase	97.2
PRK08507	275	prephenate dehydrogenase; Validated	97.2
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.16
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	97.16
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.15
PRK06046	326	alanine dehydrogenase; Validated	97.14
PRK08605	332	D-lactate dehydrogenase; Validated	97.14
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.14
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.13
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.13
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.12
PRK06545	359	prephenate dehydrogenase; Validated	97.08
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.05
PLN03139	386	formate dehydrogenase; Provisional	97.05
PRK12480	330	D-lactate dehydrogenase; Provisional	97.04
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.02
PLN02858	1378	fructose-bisphosphate aldolase	97.02
COG1810	224	Uncharacterized protein conserved in archaea [Func	97.02
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.0
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	96.99
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.98
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.98
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.97
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.97
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.97
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.96
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.96
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.95
PLN02427	386	UDP-apiose/xylose synthase	96.95
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	96.95
PRK07574	385	formate dehydrogenase; Provisional	96.94
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.92
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	96.92
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.92
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.9
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.88
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.88
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.87
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.87
PLN00016	378	RNA-binding protein; Provisional	96.85
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.84
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.84
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.84
PRK07340	304	ornithine cyclodeaminase; Validated	96.83
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.83
PRK13243	333	glyoxylate reductase; Reviewed	96.82
PRK06436	303	glycerate dehydrogenase; Provisional	96.81
PRK08818	370	prephenate dehydrogenase; Provisional	96.78
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.76
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.76
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.76
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	96.76
PRK08328	231	hypothetical protein; Provisional	96.74
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	96.73
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.73
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.72
PRK07411	390	hypothetical protein; Validated	96.72
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.71
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	96.71
PLN02522	608	ATP citrate (pro-S)-lyase	96.7
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.68
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.68
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.67
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.65
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.63
PRK06141	314	ornithine cyclodeaminase; Validated	96.61
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.6
COG1832	140	Predicted CoA-binding protein [General function pr	96.59
PLN02166	436	dTDP-glucose 4,6-dehydratase	96.59
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	96.57
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	96.56
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.56
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.56
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.56
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.56
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.53
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.52
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.51
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.51
PRK08291	330	ectoine utilization protein EutC; Validated	96.5
PRK06444	197	prephenate dehydrogenase; Provisional	96.48
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	96.47
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.47
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	96.44
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.42
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.42
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.41
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.4
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.39
PLN02206	442	UDP-glucuronate decarboxylase	96.37
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.37
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.34
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.32
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.31
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.31
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.3
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.3
PLN02778	298	3,5-epimerase/4-reductase	96.29
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.29
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	96.28
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.26
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.26
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.26
PLN02477	410	glutamate dehydrogenase	96.25
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.24
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.21
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	96.21
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	96.18
PLN02494	477	adenosylhomocysteinase	96.17
PTZ00117	319	malate dehydrogenase; Provisional	96.15
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.15
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.15
PRK14851	679	hypothetical protein; Provisional	96.14
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	96.13
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.12
KOG2742	367	consensus Predicted oxidoreductase [General functi	96.11
COG1260	362	INO1 Myo-inositol-1-phosphate synthase [Lipid meta	96.09
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.07
PRK05086	312	malate dehydrogenase; Provisional	96.06
PTZ00325	321	malate dehydrogenase; Provisional	96.05
PRK14852	989	hypothetical protein; Provisional	96.02
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.01
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.99
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.98
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.98
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	95.95
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	95.94
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	95.94
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	95.94
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.94
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.93
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	95.9
PRK06091	555	membrane protein FdrA; Validated	95.9
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	95.88
PRK12464	383	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	95.85
PRK07877	722	hypothetical protein; Provisional	95.85
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	95.85
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.83
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.82
PRK06407	301	ornithine cyclodeaminase; Provisional	95.76
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.75
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.75
PLN02214	342	cinnamoyl-CoA reductase	95.74
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	95.74
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.73
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.71
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.71
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.68
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.65
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	95.63
PLN00112	444	malate dehydrogenase (NADP); Provisional	95.63
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	95.63
PRK14030	445	glutamate dehydrogenase; Provisional	95.63
PRK06487	317	glycerate dehydrogenase; Provisional	95.62
PRK14031	444	glutamate dehydrogenase; Provisional	95.61
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.6
PRK06182	273	short chain dehydrogenase; Validated	95.58
PRK10675	338	UDP-galactose-4-epimerase; Provisional	95.57
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	95.56
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.55
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	95.54
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.53
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	95.53
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.52
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	95.5
PRK05693	274	short chain dehydrogenase; Provisional	95.46
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.44
PRK06199	379	ornithine cyclodeaminase; Validated	95.43
PLN02650	351	dihydroflavonol-4-reductase	95.41
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.36
KOG2733	423	consensus Uncharacterized membrane protein [Functi	95.34
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.34
PLN00198	338	anthocyanidin reductase; Provisional	95.32
PRK06823	315	ornithine cyclodeaminase; Validated	95.27
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.26
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	95.25
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.24
PRK14982	340	acyl-ACP reductase; Provisional	95.22
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.2
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	95.17
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.15
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.15
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.14
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	95.12
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.11
PRK06932	314	glycerate dehydrogenase; Provisional	95.09
PRK12320	699	hypothetical protein; Provisional	95.08
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	95.08
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	95.04
PLN02260	668	probable rhamnose biosynthetic enzyme	95.03
PLN02306	386	hydroxypyruvate reductase	95.02
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	95.02
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.01
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	95.0
PRK08340	259	glucose-1-dehydrogenase; Provisional	94.97
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	94.97
PRK05865	854	hypothetical protein; Provisional	94.95
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.95
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	94.94
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	94.93
PLN00203	519	glutamyl-tRNA reductase	94.92
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.9
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.89
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.85
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	94.84
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	94.84
PLN00106	323	malate dehydrogenase	94.83
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.83
PRK08177	225	short chain dehydrogenase; Provisional	94.82
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	94.81
PRK05993	277	short chain dehydrogenase; Provisional	94.8
PRK05884	223	short chain dehydrogenase; Provisional	94.79
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	94.77
PLN02260	668	probable rhamnose biosynthetic enzyme	94.73
PLN02240	352	UDP-glucose 4-epimerase	94.71
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	94.69
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	94.66
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	94.58
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.58
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.56
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.54
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	94.52
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	94.51
PLN02653	340	GDP-mannose 4,6-dehydratase	94.5
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.49
PRK06988	312	putative formyltransferase; Provisional	94.47
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.47
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	94.45
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	94.45
PLN03209	576	translocon at the inner envelope of chloroplast su	94.44
PRK10538	248	malonic semialdehyde reductase; Provisional	94.43
PLN02928	347	oxidoreductase family protein	94.42
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.39
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	94.36
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.31
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.3
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.27
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.25
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	94.25
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.25
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.23
PRK06180	277	short chain dehydrogenase; Provisional	94.2
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	94.18
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	94.17
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.16
PRK09009	235	C factor cell-cell signaling protein; Provisional	94.14
PRK07904	253	short chain dehydrogenase; Provisional	94.13
PRK05442	326	malate dehydrogenase; Provisional	94.12
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	94.12
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	94.08
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.06
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.04
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	94.03
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	94.02
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.02
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.02
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.99
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.99
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	93.99
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	93.97
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.95
PRK07825	273	short chain dehydrogenase; Provisional	93.94
PRK08267	260	short chain dehydrogenase; Provisional	93.92
PLN02686	367	cinnamoyl-CoA reductase	93.91
PRK07454	241	short chain dehydrogenase; Provisional	93.88
PRK05225	487	ketol-acid reductoisomerase; Validated	93.86
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	93.84
PRK07578	199	short chain dehydrogenase; Provisional	93.83
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	93.81
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.81
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	93.8
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.76
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	93.74
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.71
PRK06153	393	hypothetical protein; Provisional	93.71
COG2403	449	Predicted GTPase [General function prediction only	93.69
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	93.65
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	93.64
PLN02572	442	UDP-sulfoquinovose synthase	93.62
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.61
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.6
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.6
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.6
PRK06179	270	short chain dehydrogenase; Provisional	93.54
PRK12938	246	acetyacetyl-CoA reductase; Provisional	93.53
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	93.52
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.51
PRK06953	222	short chain dehydrogenase; Provisional	93.51
PRK08017	256	oxidoreductase; Provisional	93.48
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.47
PRK05872	296	short chain dehydrogenase; Provisional	93.47
KOG4777	361	consensus Aspartate-semialdehyde dehydrogenase [Am	93.47
PRK07023	243	short chain dehydrogenase; Provisional	93.44
COG2130	340	Putative NADP-dependent oxidoreductases [General f	93.41
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	93.39
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	93.36
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	93.36
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	93.34
PF02593	217	dTMP_synthase: Thymidylate synthase; InterPro: IPR	93.3
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	93.26
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.23
PRK06196	315	oxidoreductase; Provisional	93.23
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.2
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	93.16
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.14
COG3268	382	Uncharacterized conserved protein [Function unknow	93.12
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.11
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	93.07
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.06
PRK12829	264	short chain dehydrogenase; Provisional	93.03
PRK07589	346	ornithine cyclodeaminase; Validated	93.02
PRK09186	256	flagellin modification protein A; Provisional	92.99
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.96
PRK06057	255	short chain dehydrogenase; Provisional	92.96
PRK12742	237	oxidoreductase; Provisional	92.95
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	92.8
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.79
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	92.78
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.77
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	92.73
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	92.72
PRK08278	273	short chain dehydrogenase; Provisional	92.69
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	92.68
PLN02740	381	Alcohol dehydrogenase-like	92.66
TIGR03013	442	EpsB_2 sugar transferase, PEP-CTERM system associa	92.66
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.6
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.51
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	92.5
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.48
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	92.47
PRK07577	234	short chain dehydrogenase; Provisional	92.47
PRK06138	252	short chain dehydrogenase; Provisional	92.47
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	92.42
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.39
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	92.38
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.36
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	92.36
PRK07063	260	short chain dehydrogenase; Provisional	92.25
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	92.25
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.23
PRK06523	260	short chain dehydrogenase; Provisional	92.21
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	92.19
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	92.16
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	92.13
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	92.1
PRK12743	256	oxidoreductase; Provisional	92.07
PRK06483	236	dihydromonapterin reductase; Provisional	92.02
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.0
PRK08264	238	short chain dehydrogenase; Validated	91.99
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.96
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	91.93
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	91.92

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=99.97  E-value=6.9e-31  Score=194.54  Aligned_cols=119  Identities=34%  Similarity=0.554  Sum_probs=106.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |||+|+|++||||+.+++.+.++++++|++++++.   ..|+|+++++|.. +.++++++|+++++.      .+||+||
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence            79999998899999999999999999999999964   3799999999986 889999999999996      4999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ||+|+...++++.|+++|+|+|+|||||++++.+.|++++++.|++|+.
T Consensus        74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~  122 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAP  122 (124)
T ss_dssp             ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-S
T ss_pred             cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeC
Confidence            9999999999999999999999999999999999999999999999974

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=99.95  E-value=1.3e-27  Score=196.28  Aligned_cols=121  Identities=31%  Similarity=0.428  Sum_probs=112.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      .||||+|+|++||||+.+++++.+.|+++|++++++.   ..|.|.++++|.. ..++++++|+....      ..+||+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~------~~~DV~   73 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVK------ADADVL   73 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhcc------cCCCEE
Confidence            4799999999999999999999999999999999964   4678999999885 88999999976665      489999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ||||+|+...++++.|+++|+++|+|||||++++.++|.+++++.|+|++.
T Consensus        74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~  124 (266)
T COG0289          74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAP  124 (266)
T ss_pred             EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEec
Confidence            999999999999999999999999999999999999999999999999874

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=99.92  E-value=4.9e-24  Score=176.18  Aligned_cols=119  Identities=30%  Similarity=0.460  Sum_probs=106.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ||||+|+|++|+||+.+++.+.+.|+++|++++|+.   ..+++.+++.+.. +.++++++|++++ .     ..+||||
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI   73 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI   73 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence            589999998899999999999999999999999942   2356777777664 5679999999998 4     3799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh--cCeeec
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMVST  160 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~--~~Vv~t  160 (161)
                      |||+|+.+.++++.|+++|+|+|+||||+++++.++|.++|++  .|++++
T Consensus        74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a  124 (266)
T TIGR00036        74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIA  124 (266)
T ss_pred             ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEE
Confidence            9999999999999999999999999999999999999999999  788875

>PLN02775 Probable dihydrodipicolinate reductase

Probab=99.91  E-value=5.6e-24  Score=177.30  Aligned_cols=124  Identities=22%  Similarity=0.319  Sum_probs=105.8

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeee--CCHHHHHhcccccCC
Q 031341           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQSKA  106 (161)
Q Consensus        30 ~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~-~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~  106 (161)
                      +|+++.|||+|.|++|+||+++++.+.. ++++||+.+|+...|.+.+ ++.|    .+++++  +|+++++.++. ...
T Consensus         6 ~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~-~~~   79 (286)
T PLN02775          6 SPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVK-AEY   79 (286)
T ss_pred             CCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhh-ccC
Confidence            4456669999999999999999999998 9999999999766676766 6654    278888  99999986410 126


Q ss_pred             cc-EEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          107 RA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       107 ~D-VVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      +| |+||||+|+...++++.|+++|+|+|+|||||++++.+++.+ +++.|+|++
T Consensus        80 ~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~-~~~i~vv~a  133 (286)
T PLN02775         80 PNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVE-ESGVYAVIA  133 (286)
T ss_pred             CCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh-cCCccEEEE
Confidence            99 999999999999999999999999999999999998887766 567899986

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=99.90  E-value=4.3e-23  Score=171.25  Aligned_cols=114  Identities=24%  Similarity=0.306  Sum_probs=102.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCeee------eCCHHHHHhcccccCCcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA  108 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav-vd~~~~g~~~~~~~g~~~~~~i~v------~~dl~~~l~~~~~~~~~D  108 (161)
                      +||+|.||+|+||+++++++.. ++++||+. +|+...+.+.+++.|.    ++++      +++++++++     ..+|
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d   70 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE   70 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence            6899999999999999999987 99999998 8876667788887753    7888      899999986     3599


Q ss_pred             -EEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       109 -VVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                       |+||||+|+.+.++++.|+++|+|+|+|||||++++.++|.+.++ .|+|++
T Consensus        71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~-i~~l~a  122 (275)
T TIGR02130        71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAK-HPAVIA  122 (275)
T ss_pred             EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcC-CCEEEE
Confidence             999999999999999999999999999999999999999988764 999986

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=99.89  E-value=3.1e-22  Score=164.53  Aligned_cols=114  Identities=27%  Similarity=0.359  Sum_probs=100.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ||||+|+|++|+||+.+++.+...++++|++++|+....  ....    ...+++.++|+++++.      ++|+|||||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--LVGQ----GALGVAITDDLEAVLA------DADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--cccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence            589999998899999999999988999999999965321  1111    1467888999999984      699999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      +|+.+.+++..|+++|+|+|+||||++.++.++|.+++++.|++++
T Consensus        69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s  114 (257)
T PRK00048         69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIA  114 (257)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEE
Confidence            9999999999999999999999999999999999999899999986

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.76  E-value=1.4e-17  Score=120.22  Aligned_cols=113  Identities=27%  Similarity=0.321  Sum_probs=97.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |||+|+| +|++|+.+...+.+. +++++++++|+..  .+...+.   +.++++.|+|++++++.    .++|+|+.+|
T Consensus         1 i~v~iiG-~G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t   70 (120)
T PF01408_consen    1 IRVGIIG-AGSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT   70 (120)
T ss_dssp             EEEEEES-TSHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence            7999999 599999999999887 9999999999753  2222222   25688899999999984    6899999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCee
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ++..+.+++..++++|+|+++++| +.+.++.++|.+++++.++.
T Consensus        71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~  115 (120)
T PF01408_consen   71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK  115 (120)
T ss_dssp             SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred             CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence            999999999999999999999999 67999999999999998754

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=99.70  E-value=3.3e-16  Score=129.41  Aligned_cols=113  Identities=13%  Similarity=0.136  Sum_probs=92.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ||||+|+|+ |+||+.+++.+.+.+++++++++++........+..    ..++++++|++++ .     .++|+|+++|
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t   69 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA   69 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence            689999995 999999999999999999999997543212222221    1267889999988 5     4899999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCC-CC-HHHHHHHHHHhhhcCee
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMV  158 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigttg-~~-~e~~~~L~~~A~~~~Vv  158 (161)
                      +|..+.+++..++++|+|+|+++++ ++ .+..++|.++|++.++.
T Consensus        70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            9999999999999999999999997 54 45568899999998754

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=99.65  E-value=1.4e-15  Score=127.11  Aligned_cols=117  Identities=22%  Similarity=0.228  Sum_probs=96.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      .++||+|+|+.|.+++.++..+...++ +++++++|++.  .++..+.   +.+++ ..|+|++++++.    .++|+|+
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V~   72 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAVY   72 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEE
Confidence            579999999633666779999998888 79999999753  2222332   24566 489999999984    6699999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+|++..+.+++..|+++||||++++| ..|.++.++|.++|+++++..
T Consensus        73 Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l  121 (342)
T COG0673          73 IATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL  121 (342)
T ss_pred             EcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence            999999999999999999999999999 789999999999999987654

>PRK11579 putative oxidoreductase; Provisional

Probab=99.63  E-value=3.8e-15  Score=126.39  Aligned_cols=113  Identities=19%  Similarity=0.223  Sum_probs=95.3

Q ss_pred             CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ++||+|+| +|.||+. ++..+...++++|++++|++.  ....+     ...+.++|+|++++++.    .++|+|+.+
T Consensus         4 ~irvgiiG-~G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~ell~~----~~vD~V~I~   71 (346)
T PRK11579          4 KIRVGLIG-YGYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKA-----DWPTVTVVSEPQHLFND----PNIDLIVIP   71 (346)
T ss_pred             cceEEEEC-CCHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHh-----hCCCCceeCCHHHHhcC----CCCCEEEEc
Confidence            59999999 5999984 788888889999999999643  11111     01245789999999974    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |++..+.+++..|+++||||++++| ..+.++.++|.++|+++++++
T Consensus        72 tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l  118 (346)
T PRK11579         72 TPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL  118 (346)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence            9999999999999999999999999 789999999999999988764

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=99.57  E-value=1e-14  Score=124.42  Aligned_cols=124  Identities=21%  Similarity=0.218  Sum_probs=101.1

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCC-----------------CCCCeeeeCCH
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-----------------QPLEIPVMSDL   94 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-~g~~~~~~~g~~-----------------~~~~i~v~~dl   94 (161)
                      -.++||+++|+ |.||+.++.++...|+++++++.|+.. ..++..+.+|.+                 +...+.+++|.
T Consensus        15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~   93 (438)
T COG4091          15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA   93 (438)
T ss_pred             CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence            35799999995 999999999999999999999999532 112222222211                 24457788999


Q ss_pred             HHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341           95 TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +.++..    ..+||+||.| .|+...++...++.||||+|+-....+..--..|++.|++.+|+|||
T Consensus        94 ~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~  157 (438)
T COG4091          94 ELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSG  157 (438)
T ss_pred             hhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEec
Confidence            998874    8899999999 79999999999999999999987777666678999999999999986

>PRK10206 putative oxidoreductase; Provisional

Probab=99.56  E-value=3.4e-14  Score=121.02  Aligned_cols=114  Identities=20%  Similarity=0.181  Sum_probs=93.2

Q ss_pred             CeeEEEEcCCCHHHH-HHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGR-AAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr-~i~~~l~~-~~~~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ||||||+| +|++++ .++..+.. .++++|++++|+...  . .+..   ..+ ++++|+|++++++.    .++|+|+
T Consensus         1 ~irvgiiG-~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~--~-~~~~---~~~~~~~~~~~~~ell~~----~~iD~V~   69 (344)
T PRK10206          1 VINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAK--P-EEQA---PIYSHIHFTSDLDEVLND----PDVKLVV   69 (344)
T ss_pred             CeEEEEEC-CCHHHhheehhhHhcCCCCEEEEEEEcCChh--H-HHHH---HhcCCCcccCCHHHHhcC----CCCCEEE
Confidence            68999999 599774 56776644 578999999997531  1 1222   133 36789999999974    6899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+|++..+.+++..|+++||||++++| ..+.++.++|.++|+++++++
T Consensus        70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l  118 (344)
T PRK10206         70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV  118 (344)
T ss_pred             EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence            999999999999999999999999999 678999999999999998764

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=99.56  E-value=3.2e-14  Score=121.78  Aligned_cols=114  Identities=16%  Similarity=0.204  Sum_probs=90.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +++||+|+|+  +||+.+++.+.+.+ +++|+|++|+..  .+..+++   +++|++.|+|++++++.    .++|+|..
T Consensus         2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~d----~Di~~V~i   70 (343)
T TIGR01761         2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPDD----IDIACVVV   70 (343)
T ss_pred             CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhcC----CCEEEEEe
Confidence            4699999995  68999999999888 899999999753  2233333   25688899999999962    34444443


Q ss_pred             cc--CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT--~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      -|  ++..+.+.+..|+++||||++++| +..++.++|.++|+++++++
T Consensus        71 pt~~P~~~H~e~a~~aL~aGkHVL~EKP-la~~Ea~el~~~A~~~g~~l  118 (343)
T TIGR01761        71 RSAIVGGQGSALARALLARGIHVLQEHP-LHPRDIQDLLRLAERQGRRY  118 (343)
T ss_pred             CCCCCCccHHHHHHHHHhCCCeEEEcCC-CCHHHHHHHHHHHHHcCCEE
Confidence            22  356789999999999999999998 55799999999999998875

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.54  E-value=7.6e-14  Score=115.27  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=92.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ||||+|+| +|+||+.+++.+.+.+ ++++++++|++.  ....++.   +.++.+.++|+++++.      ++|+|+++
T Consensus         1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a---~~~~~~~~~~~~ell~------~~DvVvi~   68 (265)
T PRK13304          1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNL--EKAENLA---SKTGAKACLSIDELVE------DVDLVVEC   68 (265)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHH---HhcCCeeECCHHHHhc------CCCEEEEc
Confidence            58999999 5999999999998764 899999999753  2222332   1346778899999884      79999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCe
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASM  157 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg~--~~e~~~~L~~~A~~~~V  157 (161)
                      ++|+.+.+++..++++|+++++.++|.  +.+..++|.++|++.++
T Consensus        69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~  114 (265)
T PRK13304         69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC  114 (265)
T ss_pred             CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999988753  77778899999999874

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.50  E-value=2.5e-13  Score=115.52  Aligned_cols=118  Identities=16%  Similarity=0.118  Sum_probs=99.6

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCC---CeeeeCCHHHHHhcccccCC
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~---~i~v~~dl~~~l~~~~~~~~  106 (161)
                      .+..+|+||+|+ |+|++.+++.+...|  +++++|+++++.  ..+-+++   ++.   +.++|.++|+++..    +.
T Consensus         3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~--~~A~~fA---q~~~~~~~k~y~syEeLakd----~~   72 (351)
T KOG2741|consen    3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSL--ERAKEFA---QRHNIPNPKAYGSYEELAKD----PE   72 (351)
T ss_pred             CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccH--HHHHHHH---HhcCCCCCccccCHHHHhcC----CC
Confidence            455699999996 999999999999999  999999999743  3333444   233   44789999999874    88


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|||+.-++...+++.+..++++||||.+++| ..+.+|.++|.++|+++++++
T Consensus        73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~  126 (351)
T KOG2741|consen   73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFF  126 (351)
T ss_pred             cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEE
Confidence            89988666667889999999999999999998 789999999999999999875

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.46  E-value=8.8e-13  Score=109.42  Aligned_cols=111  Identities=18%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++||+|+| +|+||+.+++.+.. .+++++++++|+..  ....++.   .+++. +.++++++++.      ++|+|+.
T Consensus         6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE   73 (271)
T ss_pred             eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence            49999999 59999999999987 48999999999753  1222222   13443 56789999975      6899999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      +++++.+.+++..++++|+++++..++ +.++.++|.++|++.++-
T Consensus        74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~g-al~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         74 AAPASVLRAIVEPVLAAGKKAIVLSVG-ALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             CCCcHHHHHHHHHHHHcCCcEEEecch-hHHhHHHHHHHHHHcCCE
Confidence            999999999999999999999987654 234678899999998653

>PRK06270 homoserine dehydrogenase; Provisional

Probab=99.45  E-value=6.3e-13  Score=113.45  Aligned_cols=120  Identities=16%  Similarity=0.184  Sum_probs=88.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee------eeCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP------VMSD   93 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~---------~~eLvavvd~~-----~~g~~~~~~~g~~~~~~-i~------v~~d   93 (161)
                      ++||+|+| +|.||+.+++.+.+.+         +++|++++|+.     ..|.+..++.....+.+ ..      .+.|
T Consensus         2 ~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (341)
T PRK06270          2 EMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS   80 (341)
T ss_pred             eEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence            48999999 5999999999998664         79999999953     23444433322211222 11      2358


Q ss_pred             HHHHHhcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341           94 LTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +++++..    .++|+|||+|.+..     ..++++.++++|+|||+++.++.....++|.++|++.++.+
T Consensus        81 ~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~  147 (341)
T PRK06270         81 GLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRF  147 (341)
T ss_pred             HHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEE
Confidence            8998864    68999999997643     37899999999999999876655566789999999987643

>PRK06349 homoserine dehydrogenase; Provisional

Probab=99.40  E-value=2.3e-12  Score=112.97  Aligned_cols=113  Identities=12%  Similarity=0.100  Sum_probs=90.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~---------~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~  105 (161)
                      ++||+|+| +|.+|+.+++.+.+++         +++|+++++++..  +...   . ...+..+++|+++++..    .
T Consensus         3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~--~~~~---~-~~~~~~~~~d~~~ll~d----~   71 (426)
T PRK06349          3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--KDRG---V-DLPGILLTTDPEELVND----P   71 (426)
T ss_pred             eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh--hccC---C-CCcccceeCCHHHHhhC----C
Confidence            59999999 5999999999887653         7899999996531  1111   1 12345678999999873    6


Q ss_pred             CccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       106 ~~DVVIDfT~p-~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ++|+|++.|.+ +.+.++++.|+++|+|||+...++..++.++|.++|+++++.
T Consensus        72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            79999999854 667899999999999999988778888899999999999874

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=99.40  E-value=3.1e-12  Score=108.77  Aligned_cols=113  Identities=20%  Similarity=0.197  Sum_probs=86.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +|||+|+| +|+||+.+++.+...|++||+|++++...+ ...+      ..++..+.|.++++      .++|+|+.+|
T Consensus         3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~-~~~~------~~~v~~~~d~~e~l------~~iDVViIct   68 (324)
T TIGR01921         3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAE-TLDT------ETPVYAVADDEKHL------DDVDVLILCM   68 (324)
T ss_pred             CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHH-HHhh------cCCccccCCHHHhc------cCCCEEEEcC
Confidence            59999999 699999999999999999999999975311 1111      22333345666665      3799999888


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC-CC-CHHHHHHHHHHhhhc---CeeecC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVP-HI-QLETVSALSAFCDKA---SMVSTG  161 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigtt-g~-~~e~~~~L~~~A~~~---~Vv~tg  161 (161)
                      ++..+.+.+..++++|+|+|...+ .. .++..+.|.++|++.   .++.+|
T Consensus        69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~G  120 (324)
T TIGR01921        69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTG  120 (324)
T ss_pred             CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECC
Confidence            888889999999999999998764 22 257788999999963   455554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=99.36  E-value=1.8e-12  Score=94.13  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             CCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCchhH
Q 031341           43 AVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV  119 (161)
Q Consensus        43 a~G~mGr~i~~~l~~~~---~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~  119 (161)
                      ++|.+|+.+++++.+.+   ++++++++++. ...+......   ..+..++.+++++++.    ..+|+|||+|.++..
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~~~   72 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAAS---FPDEAFTTDLEELIDD----PDIDVVVECTSSEAV   72 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHH---HTHSCEESSHHHHHTH----TT-SEEEE-SSCHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhh---cccccccCCHHHHhcC----cCCCEEEECCCchHH
Confidence            15999999999999876   89999999976 1111111110   2345678999999863    479999999999999


Q ss_pred             HHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCee
Q 031341          120 YDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMV  158 (161)
Q Consensus       120 ~~~~~~al~~g~~vVigttg~--~~e~~~~L~~~A~~~~Vv  158 (161)
                      .+++..++++|+|||+...+.  +....++|.++|+++++-
T Consensus        73 ~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~  113 (117)
T PF03447_consen   73 AEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVR  113 (117)
T ss_dssp             HHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred             HHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence            999999999999999987654  347788999999998763

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.32  E-value=1.1e-11  Score=105.99  Aligned_cols=96  Identities=23%  Similarity=0.256  Sum_probs=75.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---------Ccchh----hhhc-CCCCCCeeeeCCHHHHHhc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---------GEDIG----MVCD-MEQPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~---------g~~~~----~~~g-~~~~~~i~v~~dl~~~l~~  100 (161)
                      |+||+|+|+ |+|||.+++.+..+++++|+++.|+...         |.+..    +..+ . ...+++++.++++++. 
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~-~~~~i~V~~~~~el~~-   77 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAF-EEAGIPVAGTIEDLLE-   77 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccc-cCCceEEcCChhHhhc-
Confidence            689999996 9999999999999999999999995321         11100    0000 1 1236778888888874 


Q ss_pred             ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                           ++|+|+|||.+..+.+++..++++|+++|.-.+
T Consensus        78 -----~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~  110 (341)
T PRK04207         78 -----KADIVVDATPGGVGAKNKELYEKAGVKAIFQGG  110 (341)
T ss_pred             -----cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence                 799999999999999999999999999887543

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=99.25  E-value=1.2e-10  Score=96.58  Aligned_cols=108  Identities=9%  Similarity=0.151  Sum_probs=88.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +||+|+| +|.||+.+++.+..  .++++|+++.++..  .....+.     ..+++++|+++++.     .++|+||++
T Consensus         3 ~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~-----~~~~~~~~l~~ll~-----~~~DlVVE~   69 (267)
T PRK13301          3 HRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALA-----GRVALLDGLPGLLA-----WRPDLVVEA   69 (267)
T ss_pred             eEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhh-----ccCcccCCHHHHhh-----cCCCEEEEC
Confidence            7999999 59999999999875  35699999998653  1222222     12678899999876     489999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCC-C-CHHHHHHHHHHhhhcC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKAS  156 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg-~-~~e~~~~L~~~A~~~~  156 (161)
                      .+|.++.++....|++|+++++..+| | +++-.++|.++|++.+
T Consensus        70 A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g  114 (267)
T PRK13301         70 AGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG  114 (267)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence            99999999999999999999999876 3 5666789999998864

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.23  E-value=8.2e-11  Score=98.60  Aligned_cols=96  Identities=17%  Similarity=0.222  Sum_probs=77.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ++||+|+| +|+||+.++..+.+.+++++++++|++... ....++   .++|++. ++++++++..    .++|+|+++
T Consensus         1 klrVAIIG-~G~IG~~h~~~ll~~~~~elvaV~d~d~es-~~la~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia   71 (285)
T TIGR03215         1 KVKVAIIG-SGNIGTDLMYKLLRSEHLEMVAMVGIDPES-DGLARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA   71 (285)
T ss_pred             CcEEEEEe-CcHHHHHHHHHHHhCCCcEEEEEEeCCccc-HHHHHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence            48999999 599999998888889999999999964321 111122   2467765 5689999874    679999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg  139 (161)
                      |++..+.+++..++++|++++..|+-
T Consensus        72 Tp~~~H~e~a~~al~aGk~VIdekPa   97 (285)
T TIGR03215        72 TSAKAHARHARLLAELGKIVIDLTPA   97 (285)
T ss_pred             CCcHHHHHHHHHHHHcCCEEEECCcc
Confidence            99999999999999999999998873

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.22  E-value=9.5e-11  Score=100.05  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=83.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCCCCCC-eeee--------
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPVM--------   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~---------~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~-i~v~--------   91 (161)
                      ++||+|+| +|.+|+.+++.+.+.         -+++++++.|+.     ..|.+..++.....+.+ +.-+        
T Consensus         2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~   80 (336)
T PRK08374          2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN   80 (336)
T ss_pred             eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence            48999999 699999999988763         148999999953     23444433222111111 0111        


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      .++++++..    .++||+||+|.++.+.++...++++|+|||+++++.-....++|.++|++++
T Consensus        81 ~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~  141 (336)
T PRK08374         81 FSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERN  141 (336)
T ss_pred             CCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcC
Confidence            267788753    5799999999999999999999999999999998743345667777777763

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.20  E-value=1.9e-10  Score=84.21  Aligned_cols=94  Identities=17%  Similarity=0.197  Sum_probs=71.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCC-CCeeeeC-CHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQP-LEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-~g~~~~~~~g~~~~-~~i~v~~-dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ||+|+|++|.+|+.+++.|.++|.++++.+++++. .|++..+..+.... .+..+.+ +.++ +.      +.|+|+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE-LS------DVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH-HT------TESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH-hh------cCCEEEec
Confidence            79999999999999999999999999999999776 78887766542111 1233333 3333 33      79999966


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      +......+.+..+++.|+.||--+
T Consensus        74 ~~~~~~~~~~~~~~~~g~~ViD~s   97 (121)
T PF01118_consen   74 LPHGASKELAPKLLKAGIKVIDLS   97 (121)
T ss_dssp             SCHHHHHHHHHHHHHTTSEEEESS
T ss_pred             CchhHHHHHHHHHhhCCcEEEeCC
Confidence            666677899999999999876433

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=99.18  E-value=1.9e-10  Score=97.02  Aligned_cols=97  Identities=20%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhccccc---CCccE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQS---KARAV  109 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~---~~~DV  109 (161)
                      +++||+|+| +|++|+.++..+.+.+++++++++|++.. .+....+   .++|++. +++++++++    +   .++|+
T Consensus         3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~e-s~gla~A---~~~Gi~~~~~~ie~LL~----~~~~~dIDi   73 (302)
T PRK08300          3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPE-SDGLARA---RRLGVATSAEGIDGLLA----MPEFDDIDI   73 (302)
T ss_pred             CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChh-hHHHHHH---HHcCCCcccCCHHHHHh----CcCCCCCCE
Confidence            369999999 79999999988888999999999996532 1111222   2467776 589999986    2   36999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVigttg  139 (161)
                      |+|+|.+..+.+++..++++|++++..|+.
T Consensus        74 Vf~AT~a~~H~e~a~~a~eaGk~VID~sPA  103 (302)
T PRK08300         74 VFDATSAGAHVRHAAKLREAGIRAIDLTPA  103 (302)
T ss_pred             EEECCCHHHHHHHHHHHHHcCCeEEECCcc
Confidence            999999999999999999999999988863

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=99.18  E-value=2.9e-10  Score=92.32  Aligned_cols=109  Identities=17%  Similarity=0.210  Sum_probs=86.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++|+++|| |.+|+.+++.+... -++|+++++|+..  .++.++..   ..+.+..+++++++.      .+|+++++.
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~~---~~~~~~~s~ide~~~------~~DlvVEaA   68 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELEA---SVGRRCVSDIDELIA------EVDLVVEAA   68 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHHh---hcCCCccccHHHHhh------ccceeeeeC
Confidence            68999995 99999999988744 5799999999753  22222221   234444489999985      799999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCC-C-CHHHHHHHHHHhhhcC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKAS  156 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigttg-~-~~e~~~~L~~~A~~~~  156 (161)
                      +|+++.+++..+|++|+++++-.+| | +++-.+.+.++|+..+
T Consensus        69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~  112 (255)
T COG1712          69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGG  112 (255)
T ss_pred             CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCC
Confidence            9999999999999999999998886 4 4455678888888753

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=99.09  E-value=1.1e-09  Score=104.74  Aligned_cols=115  Identities=19%  Similarity=0.157  Sum_probs=90.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcCCCCC-C---eee-eCCHHH
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPL-E---IPV-MSDLTM   96 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e------------Lvavvd~~~~g~~~~~~~g~~~~~-~---i~v-~~dl~~   96 (161)
                      +|-||+|+|| |+||+.+++.+.+.++.+            ++.++|+..  .++..+..   .. +   +.+ +.|.++
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~---~~~~~~~v~lDv~D~e~  641 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVE---GIENAEAVQLDVSDSES  641 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHH---hcCCCceEEeecCCHHH
Confidence            4679999996 999999999999999887            788898643  12222221   11 2   445 678887


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +.+.+   ..+|+||.++++..+.+.++.|+++|+|+|+.+  ++.++..+|.+.|+++++.+
T Consensus       642 L~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~  699 (1042)
T PLN02819        642 LLKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITI  699 (1042)
T ss_pred             HHHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEE
Confidence            76522   269999999999999999999999999999877  77888999999999998764

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=99.08  E-value=8.8e-10  Score=94.25  Aligned_cols=99  Identities=19%  Similarity=0.108  Sum_probs=72.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+||+|+||+|.+|+.+++.+.++|++++++++++...++.+.+..+.........++++++...     .++|+|+.++
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~vD~Vf~al   76 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-----AGADVVFLAL   76 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-----cCCCEEEECC
Confidence            68999999999999999999999999999999996555554443322100000113455554332     4799999778


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      ++..+.+.+..++++|++||-=..
T Consensus        77 P~~~~~~~v~~a~~aG~~VID~S~  100 (343)
T PRK00436         77 PHGVSMDLAPQLLEAGVKVIDLSA  100 (343)
T ss_pred             CcHHHHHHHHHHHhCCCEEEECCc
Confidence            778888999999999999885443

>PRK06392 homoserine dehydrogenase; Provisional

Probab=99.02  E-value=2.8e-09  Score=90.84  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=82.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCCCCCCe--eeeC--CHHHHHh
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI--PVMS--DLTMVLG   99 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-------~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~i--~v~~--dl~~~l~   99 (161)
                      |||+|+| +|.+|+.+++.+.+.       .+++++++.|+.     ..|-++.++.....+..+  ...+  ++++++.
T Consensus         1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~   79 (326)
T PRK06392          1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE   79 (326)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence            5899999 599999999998764       578999999953     234444443221111001  1112  6777775


Q ss_pred             cccccCCccEEEEccCc-h---hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT~p-~---~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                           .++|++||+|.. .   ....+.+.++++|+|||+..-+.-....++|.++|+++++-
T Consensus        80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence                 589999999942 2   24678899999999999877654456678999999988653

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=99.01  E-value=3e-09  Score=88.93  Aligned_cols=113  Identities=19%  Similarity=0.252  Sum_probs=93.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVID  112 (161)
                      |+|.+.| +|..|...++.+..+|+++|||+.+++  +.|+|++++.|.. +.++...++++..++     ..+| ++.+
T Consensus         3 ~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlA-----tl~~~~~y~   75 (350)
T COG3804           3 LRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLA-----TLADAVIYA   75 (350)
T ss_pred             ceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeeccccccee-----ccccceeee
Confidence            7999999 799999999999999999999999963  5799999999997 688999999999887     3455 4444


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC------CCCHHHHHHHHHHhhhcCe
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASM  157 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt------g~~~e~~~~L~~~A~~~~V  157 (161)
                      .-.|.  .+....++..|++||.-.+      ...+|..+++.++|.+++.
T Consensus        76 ~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn  124 (350)
T COG3804          76 PLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGN  124 (350)
T ss_pred             cccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCC
Confidence            44563  7788899999999876432      3468889999999999876

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=98.93  E-value=5.6e-09  Score=85.04  Aligned_cols=89  Identities=13%  Similarity=0.188  Sum_probs=72.9

Q ss_pred             CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341           60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus        60 ~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg  139 (161)
                      +++|++++|+..  .+..++.   ..+++++|+|+++++.     .++|+|+.+|++..+.+++..++++|+|+++.+++
T Consensus         1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g   70 (229)
T TIGR03855         1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG   70 (229)
T ss_pred             CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence            579999999753  2222333   2457788999999986     47999999999999999999999999999999885


Q ss_pred             -C-CHHHHHHHHHHhhhcCee
Q 031341          140 -I-QLETVSALSAFCDKASMV  158 (161)
Q Consensus       140 -~-~~e~~~~L~~~A~~~~Vv  158 (161)
                       + +.++.++|.++|++.++.
T Consensus        71 Alad~e~~~~l~~aA~~~g~~   91 (229)
T TIGR03855        71 ALADRELRERLREVARSSGRK   91 (229)
T ss_pred             ccCCHHHHHHHHHHHHhcCCE
Confidence             4 678899999999998643

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=98.77  E-value=1.1e-07  Score=67.18  Aligned_cols=90  Identities=22%  Similarity=0.282  Sum_probs=70.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ++.||+|+|+ |++|++++....+..+++++++.|.+..  +.++.     -.++|+|.+++++.+.    .++|+.|.+
T Consensus         2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~--~~G~~-----i~gipV~~~~~~l~~~----~~i~iaii~   69 (96)
T PF02629_consen    2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPE--KIGKE-----IGGIPVYGSMDELEEF----IEIDIAIIT   69 (96)
T ss_dssp             TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTT--TTTSE-----ETTEEEESSHHHHHHH----CTTSEEEEE
T ss_pred             CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCC--ccCcE-----ECCEEeeccHHHhhhh----hCCCEEEEE
Confidence            4589999996 9999999877778899999999995431  22211     2489999999999874    249998978


Q ss_pred             cCchhHHHHHHHHHHcCCcEEE
Q 031341          114 TDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVi  135 (161)
                      .+++.+.+.+..++++|++.|+
T Consensus        70 VP~~~a~~~~~~~~~~gIk~i~   91 (96)
T PF02629_consen   70 VPAEAAQEVADELVEAGIKGIV   91 (96)
T ss_dssp             S-HHHHHHHHHHHHHTT-SEEE
T ss_pred             cCHHHHHHHHHHHHHcCCCEEE
Confidence            8778888999999999988775

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.77  E-value=7.5e-08  Score=82.81  Aligned_cols=120  Identities=16%  Similarity=0.158  Sum_probs=79.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCC-CCCe--eeeCCHHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTMV   97 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~---------~~eLvavvd~~~-----~g~~~~~~~g~~~-~~~i--~v~~dl~~~   97 (161)
                      +++|+|+| .|.+|+.+++.|.+..         +++++++.++..     .|.+..+++.... ..+.  ....+.++.
T Consensus         2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (346)
T PRK06813          2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER   80 (346)
T ss_pred             eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence            48999999 6999999999987543         578999988532     1323222221100 0000  012233333


Q ss_pred             HhcccccCCccEEEEccCc-----hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341           98 LGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p-----~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      +..   ..+.|||||.|..     +....+++.++++|+|||...-+.-....++|.++|+++++-
T Consensus        81 ~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~  143 (346)
T PRK06813         81 ATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVR  143 (346)
T ss_pred             hcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCe
Confidence            321   1258999999864     355788899999999999887665556678999999998654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.74  E-value=1e-07  Score=81.76  Aligned_cols=96  Identities=18%  Similarity=0.138  Sum_probs=65.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhhcCC-CCCCeeee-CCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDME-QPLEIPVM-SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-~~~g~~~~~~~g~~-~~~~i~v~-~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +||+|+||||.+|+++++.+.++|++++++++++ ...|+.+.+..+.. ...+..+. .+.++++.      ++|+|+-
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE------DADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc------CCCEEEE
Confidence            5899999999999999999999999999988664 33566554432210 00011121 14455542      6999994


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      +++...+.+.+..++++|++||-=+
T Consensus        75 alP~~~s~~~~~~~~~~G~~VIDlS   99 (346)
T TIGR01850        75 ALPHGVSAELAPELLAAGVKVIDLS   99 (346)
T ss_pred             CCCchHHHHHHHHHHhCCCEEEeCC
Confidence            4444455788888999999988533

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.73  E-value=8.7e-08  Score=82.07  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=68.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCC------C-CCCeeee-CCHHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDME------Q-PLEIPVM-SDLTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav-vd~~~~g~~~~~~~g~~------~-~~~i~v~-~dl~~~l~~~~~~~  105 (161)
                      |+||+|+|++|.+|+++++.+.++|+++|+++ .++...|++..+..+..      . ..++.+. .+.++ +.      
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~------   75 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD------   75 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc------
Confidence            58999999999999999999999999999999 44445666655432220      0 0122332 24443 33      


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ++|+|+++++.....+++..+.+.|+.+|.-+
T Consensus        76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls  107 (349)
T PRK08664         76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNA  107 (349)
T ss_pred             CCCEEEEeCChhHHHHHHHHHHHCCCEEEECC
Confidence            79999977766666788888889999988544

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=98.71  E-value=1.2e-07  Score=81.08  Aligned_cols=93  Identities=17%  Similarity=0.222  Sum_probs=66.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcC------CC-CCCeeeeCCHH-HHHhcccccCC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDM------EQ-PLEIPVMSDLT-MVLGSISQSKA  106 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-~~g~~~~~~~g~------~~-~~~i~v~~dl~-~~l~~~~~~~~  106 (161)
                      +||+|+|++|+||+.+++.+.++++++|++++++. ..|++..+....      .. -.+..+ .+++ +.+      .+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~   73 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPI-VEPEPVAS------KD   73 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEE-EeCCHHHh------cc
Confidence            58999999999999999999999999999998743 356665543321      00 011122 2222 223      37


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      +|+|+.++++..+.++...+.++|+++|.
T Consensus        74 ~DvVf~a~p~~~s~~~~~~~~~~G~~VID  102 (341)
T TIGR00978        74 VDIVFSALPSEVAEEVEPKLAEAGKPVFS  102 (341)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence            99999777777778899999999999874

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.67  E-value=2.3e-07  Score=71.10  Aligned_cols=109  Identities=17%  Similarity=0.114  Sum_probs=70.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+||+++| .|.||+.+++.+. ..++++. ++|++.  ....++.    +.++...++++++.+      ..|+|+-+.
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLA-KAGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHH-HTTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred             CCEEEEEc-hHHHHHHHHHHHH-hcCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence            78999999 6999999999997 6689865 678643  2233332    346788899999986      579988655


Q ss_pred             Cchh-HHHHHHH-----HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          115 DAST-VYDNVKQ-----ATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 ~p~~-~~~~~~~-----al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++.. ..+.+..     .+..|.-+ +-++..++++.+++.+..++.++-|
T Consensus        66 ~~~~~v~~v~~~~~i~~~l~~g~ii-id~sT~~p~~~~~~~~~~~~~g~~~  115 (163)
T PF03446_consen   66 PDDDAVEAVLFGENILAGLRPGKII-IDMSTISPETSRELAERLAAKGVRY  115 (163)
T ss_dssp             SSHHHHHHHHHCTTHGGGS-TTEEE-EE-SS--HHHHHHHHHHHHHTTEEE
T ss_pred             ccchhhhhhhhhhHHhhccccceEE-EecCCcchhhhhhhhhhhhhcccee
Confidence            4433 3343332     23445544 4455588899999999988877654

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.66  E-value=1.9e-07  Score=79.79  Aligned_cols=115  Identities=15%  Similarity=0.070  Sum_probs=80.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCH-----HHHHh
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-----TMVLG   99 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~---------~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl-----~~~l~   99 (161)
                      +++||+|+| .|.+|+.+++.+.+.         -+++++++.+++..-.+--+..    +. -...++.     .+++.
T Consensus         2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~   75 (333)
T COG0460           2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLL----NA-EVWTTDGALSLGDEVLL   75 (333)
T ss_pred             ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccccccc----ch-hhheecccccccHhhhc
Confidence            459999999 699999999999875         4678999999643111100110    00 1223344     44443


Q ss_pred             cccccCCccEEEEccCc--hhH--HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          100 SISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT~p--~~~--~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                          +..+|+|++.+..  +..  .++.+.++++|+|||...-.+-.....+|.++|+++++.
T Consensus        76 ----~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~  134 (333)
T COG0460          76 ----DEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVK  134 (333)
T ss_pred             ----cccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCe
Confidence                2689999998744  333  489999999999999887666566788999999998743

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.65  E-value=2e-07  Score=81.10  Aligned_cols=95  Identities=12%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHH-HhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~-l~~~~~~~~~DVVID  112 (161)
                      .++||+|+||+|..|+++++.+.++|+++|+.+.++...|+.+.+........+.+.+.+++.. +.      +.|+|+ 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~------~~DvVf-  109 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS------DVDAVF-  109 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc------CCCEEE-
Confidence            5689999999999999999999999999999998865556544322110001122223334433 32      799999 


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEE
Q 031341          113 FTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      ++.|+.....+...++.|+.||-
T Consensus       110 ~Alp~~~s~~i~~~~~~g~~VID  132 (381)
T PLN02968        110 CCLPHGTTQEIIKALPKDLKIVD  132 (381)
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEE
Confidence            77777665444444678877764

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=98.63  E-value=9.9e-08  Score=73.24  Aligned_cols=99  Identities=24%  Similarity=0.258  Sum_probs=64.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------------Ccchhhhh----cCC-CCCCeeee--CCH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------------GEDIGMVC----DME-QPLEIPVM--SDL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~--------------g~~~~~~~----g~~-~~~~i~v~--~dl   94 (161)
                      |||+|.| +||+||.+++.+...+++||+++-|....              |.-..++.    ++. ....+.++  .++
T Consensus         1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp   79 (151)
T PF00044_consen    1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP   79 (151)
T ss_dssp             EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred             CEEEEEC-CCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence            7999999 79999999999999999999999995311              11000000    000 00012222  334


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVigtt  138 (161)
                      +++-..   +.++|+|+|+|..-...+.+...+++|. .||++.+
T Consensus        80 ~~i~W~---~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap  121 (151)
T PF00044_consen   80 EEIPWG---ELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAP  121 (151)
T ss_dssp             GGSTHH---HHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS
T ss_pred             cccccc---cccccEEEeccccceecccccccccccccceeeccc
Confidence            443221   2478999999988878888888899994 4555444

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.63  E-value=1.6e-07  Score=79.95  Aligned_cols=101  Identities=23%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEec-C---------C---CCcchh------hhhcCCCCCCeeeeCCH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS-H---------S---VGEDIG------MVCDMEQPLEIPVMSDL   94 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~-~---------~---~g~~~~------~~~g~~~~~~i~v~~dl   94 (161)
                      |+||+|.| +||+||.+++++.+.+ ++|+||+-|. +         .   .|.=.+      ...-+ ...+++++.+.
T Consensus         1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v-~g~~I~v~~~~   78 (335)
T COG0057           1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVV-NGKGIKVLAER   78 (335)
T ss_pred             CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEE-CCceEEEEecC
Confidence            68999999 7999999999999998 7999999992 1         0   111000      00111 13467776555


Q ss_pred             H-HHHhcccccCCccEEEEccCchhHHHHHHHHHHcC--CcEEEeCCC
Q 031341           95 T-MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPH  139 (161)
Q Consensus        95 ~-~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g--~~vVigttg  139 (161)
                      + +.|.-  .+.+.|+|||+|.--...+.+...++.|  +.|+++-++
T Consensus        79 ~p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~  124 (335)
T COG0057          79 DPANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG  124 (335)
T ss_pred             ChHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence            5 43321  1356789999997777788888888886  777776554

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.63  E-value=5.5e-07  Score=76.75  Aligned_cols=88  Identities=18%  Similarity=0.194  Sum_probs=62.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVI  111 (161)
                      |+||+|+|++|+.|+++++.|.+  +|.++|+++......|+... +.    ...+.+. +++ ..+      .++|+||
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~----g~~i~v~-d~~~~~~------~~vDvVf   68 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FK----GKELKVE-DLTTFDF------SGVDIAL   68 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eC----CceeEEe-eCCHHHH------cCCCEEE
Confidence            57999999999999999999998  79999999887655555443 11    1233333 333 233      2799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEE
Q 031341          112 DFTDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vV  134 (161)
                      .++......+.+..++++|..||
T Consensus        69 ~A~g~g~s~~~~~~~~~~G~~VI   91 (334)
T PRK14874         69 FSAGGSVSKKYAPKAAAAGAVVI   91 (334)
T ss_pred             ECCChHHHHHHHHHHHhCCCEEE
Confidence            44433445688888899999665

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=98.61  E-value=1e-06  Score=75.03  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=87.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..||.|-|.||+-|+.+.+... .-+.++||.+.+..-|...   .    ..|+|+|++++++.+.    .++|+.+.|.
T Consensus        29 ~t~v~vqGitg~~g~~h~~~~~-~ygt~iv~GV~Pgkgg~~v---~----~~Gvpvy~sv~ea~~~----~~~D~avI~V   96 (317)
T PTZ00187         29 NTKVICQGITGKQGTFHTEQAI-EYGTKMVGGVNPKKAGTTH---L----KHGLPVFATVKEAKKA----TGADASVIYV   96 (317)
T ss_pred             CCeEEEecCCChHHHHHHHHHH-HhCCcEEEEECCCCCCceE---e----cCCccccCCHHHHhcc----cCCCEEEEec
Confidence            3699999999999999999887 4589999999975544321   1    1388999999999863    4599999899


Q ss_pred             CchhHHHHHHHHHHcCCcEEEe-CCCCCHHHHHHHHHHhh-hcCee
Q 031341          115 DASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMV  158 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVig-ttg~~~e~~~~L~~~A~-~~~Vv  158 (161)
                      +|..+.+.+..|.++|++.++- |.|+...+..++.++++ +.++.
T Consensus        97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~r  142 (317)
T PTZ00187         97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTR  142 (317)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCE
Confidence            9999999999999999988654 55887666566666664 34443

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.59  E-value=4.4e-07  Score=75.84  Aligned_cols=113  Identities=18%  Similarity=0.282  Sum_probs=95.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .-||.|-|.+|++|..+.+.+++- +..+|+.+-+.+-|..         -.++|+|++++|++.+    ..+|+-+.|-
T Consensus         8 ~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~V   73 (293)
T COG0074           8 DTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFV   73 (293)
T ss_pred             CCeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEec
Confidence            468999999999999999999876 9999999987554432         2468999999999985    6899988899


Q ss_pred             CchhHHHHHHHHHHcCCcEEEe-CCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          115 DASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVig-ttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +|..+.+-+..|+++|+++|+- |.|....+.-++.+.+++.++..-|
T Consensus        74 p~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiG  121 (293)
T COG0074          74 PPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIG  121 (293)
T ss_pred             CcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEEC
Confidence            9999999999999999888766 4478888888899999988766543

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=98.58  E-value=3.1e-07  Score=78.67  Aligned_cols=95  Identities=17%  Similarity=0.089  Sum_probs=68.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC--CCeeee-CCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVM-SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~--~~i~v~-~dl~~~l~~~~~~~~~DVV  110 (161)
                      .|+||+|+|++|..|.++++.+..+|++|+..+..+...|+++.+..... .  .+.++. -|.+++..     .++|+|
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l-~g~~~l~~~~~~~~~~~~-----~~~Dvv   74 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNL-RGLVDLPFQTIDPEKIEL-----DECDVV   74 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCccc-ccccccccccCChhhhhc-----ccCCEE
Confidence            47999999999999999999999999999666665555788777664322 1  112221 23444432     468999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEE
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vV  134 (161)
                      +-+++.....+.+...++.|+.||
T Consensus        75 FlalPhg~s~~~v~~l~~~g~~VI   98 (349)
T COG0002          75 FLALPHGVSAELVPELLEAGCKVI   98 (349)
T ss_pred             EEecCchhHHHHHHHHHhCCCeEE
Confidence            955555555789999999999966

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=98.58  E-value=1.7e-06  Score=72.82  Aligned_cols=113  Identities=16%  Similarity=0.263  Sum_probs=86.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +-||.|.|.+|++|+.+.+.+.+. +++.+..+.+...+   .+      -.|++.|.+++++.+.    ..+|++|.+.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~~~---~~------v~G~~~y~sv~dlp~~----~~~DlAvi~v   73 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGKGG---TT------VLGLPVFNTVAEAVEA----TGANASVIYV   73 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCCCC---Ce------EeCeeccCCHHHHhhc----cCCCEEEEEc
Confidence            479999999999999999999864 55556556543101   11      2478999999999851    1299999788


Q ss_pred             CchhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~v-Vigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +++.+.+.++.|.+.|++. |+-+.||..++.++|.++|++.++-.-|
T Consensus        74 p~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG  121 (291)
T PRK05678         74 PPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG  121 (291)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence            8888899999999999776 5667789876667899999998765543

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=98.58  E-value=4.3e-07  Score=69.42  Aligned_cols=98  Identities=22%  Similarity=0.242  Sum_probs=60.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh------cCC------CCC-------Ceeee--CCH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC------DME------QPL-------EIPVM--SDL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~------g~~------~~~-------~i~v~--~dl   94 (161)
                      +||+|+|+ |+||+.+++.+...++++++++.|.... ....-++      |..      ...       .++++  .++
T Consensus         1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~-~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p   78 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDP-ETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDP   78 (149)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCH-HHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCCh
Confidence            68999995 9999999999998999999999994110 1111111      000      000       11222  344


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g-~~vVigtt  138 (161)
                      +++...   +.++|+|||+|---...+.+...++.| +.|+++.|
T Consensus        79 ~~~~w~---~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap  120 (149)
T smart00846       79 ANLPWK---ELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAP  120 (149)
T ss_pred             HHCccc---ccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCC
Confidence            444321   247899999975555556666777778 55666554

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=98.58  E-value=1.5e-06  Score=72.94  Aligned_cols=113  Identities=17%  Similarity=0.277  Sum_probs=88.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .-||.|.|++|++|+.+.+.+. .-++.+++.+.+...+   .+      -.|++.|.+++++.+.    .++|+++.+.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~-~~g~~~v~~V~p~~~~---~~------v~G~~~y~sv~dlp~~----~~~Dlavi~v   71 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQML-AYGTNIVGGVTPGKGG---TT------VLGLPVFDSVKEAVEE----TGANASVIFV   71 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHH-hCCCCEEEEECCCCCc---ce------ecCeeccCCHHHHhhc----cCCCEEEEec
Confidence            4689999999999999999986 5577788888754211   11      2478999999999851    1389999788


Q ss_pred             CchhHHHHHHHHHHcCCcEE-EeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          115 DASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vV-igttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +++.+.+.++.|.+.|++.+ +-+.||.+.+.++|.++|++.++-.-|
T Consensus        72 pa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilG  119 (286)
T TIGR01019        72 PAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIG  119 (286)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence            88888999999999997655 657789776668999999998776544

ATP citrate lyases appear to form an outgroup.

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.58  E-value=2.2e-07  Score=79.60  Aligned_cols=94  Identities=21%  Similarity=0.192  Sum_probs=68.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCC------------CCCCeeeeCCHHHHHhccccc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME------------QPLEIPVMSDLTMVLGSISQS  104 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~------------~~~~i~v~~dl~~~l~~~~~~  104 (161)
                      |+|+| +|++|+.+++.+...++++|+|+.|.+.. ...+....|..            .+.++.+..++++++.     
T Consensus         1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~-----   74 (333)
T TIGR01546         1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE-----   74 (333)
T ss_pred             CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence            68999 59999999999988899999999994321 00111111110            1235677888999985     


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcCCcEE-EeCC
Q 031341          105 KARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVP  138 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~g~~vV-igtt  138 (161)
                       ++|+|+++|....+..+....++.|...| +|.+
T Consensus        75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence             79999999977888889999999985555 5433

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.52  E-value=9.5e-07  Score=75.68  Aligned_cols=89  Identities=16%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~--~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DVV  110 (161)
                      +|+||+|+||||..|+++++.|.  .+|..+|+.+.+....|+.+. +.+    .+..+. .+.++ ++      ++|++
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~~~~~~~~-~~------~vD~v   70 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRVREVDSFD-FS------QVQLA   70 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEEeeCChHH-hc------CCCEE
Confidence            56999999999999999999999  689999999988766666544 211    122222 12222 33      79999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEE
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vV  134 (161)
                      +-++++....+.+..+.++|+.+|
T Consensus        71 Fla~p~~~s~~~v~~~~~~G~~VI   94 (336)
T PRK05671         71 FFAAGAAVSRSFAEKARAAGCSVI   94 (336)
T ss_pred             EEcCCHHHHHHHHHHHHHCCCeEE
Confidence            944444445678888899999877

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=98.50  E-value=3.1e-06  Score=71.61  Aligned_cols=112  Identities=14%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -||.|.|.+|+.|+.+.+....- +.++++.+.+...+.   +      -.|+|.|.+++++.+.    .++|++|.+.+
T Consensus        13 ~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~~---~------i~G~~~y~sv~dlp~~----~~~DlAvI~vP   78 (300)
T PLN00125         13 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---E------HLGLPVFNTVAEAKAE----TKANASVIYVP   78 (300)
T ss_pred             CeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCCc---e------EcCeeccCCHHHHhhc----cCCCEEEEecC
Confidence            69999999999999999988744 999999998642111   1      2478999999999851    23899887888


Q ss_pred             chhHHHHHHHHHHcCCc-EEEeCCCCCHHH-HHHHHHHhhhcCeeecC
Q 031341          116 ASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMVSTG  161 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~-vVigttg~~~e~-~~~L~~~A~~~~Vv~tg  161 (161)
                      +..+.+.++.|.++|++ +|+-+.||.+.. .+.+.++|++.++-.-|
T Consensus        79 a~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviG  126 (300)
T PLN00125         79 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIG  126 (300)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEEC
Confidence            88889999999999988 456677887553 45566678888765443

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=98.50  E-value=1.7e-06  Score=73.53  Aligned_cols=76  Identities=17%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+||+|+|++|..|+++++.|.++|.++|+.+..+..  .+.               .+.++.+.      ++|+|+ |+
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~---------------~~~~~~~~------~~DvvF-la   57 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA---------------AARRELLN------AADVAI-LC   57 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc---------------cCchhhhc------CCCEEE-EC
Confidence            6899999999999999999999999999999986532  111               12233332      689999 66


Q ss_pred             CchhH-HHHHHHHHHcCCcEE
Q 031341          115 DASTV-YDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~-~~~~~~al~~g~~vV  134 (161)
                      .|+.. .+.+..+.+.|+.||
T Consensus        58 lp~~~s~~~~~~~~~~g~~VI   78 (313)
T PRK11863         58 LPDDAAREAVALIDNPATRVI   78 (313)
T ss_pred             CCHHHHHHHHHHHHhCCCEEE
Confidence            66655 678888889999877

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=98.46  E-value=1.3e-06  Score=74.94  Aligned_cols=89  Identities=16%  Similarity=0.158  Sum_probs=68.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +.+||+|+||||..|+++++.|.+  +|..+|..+.+....|+.+. +.+    .+..+. ++++...     .+.|+++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvvf   71 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLAF   71 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEEE
Confidence            458999999999999999999998  89999999988666777665 211    245554 5555432     2689999


Q ss_pred             EccCchhH-HHHHHHHHHcCCcEE
Q 031341          112 DFTDASTV-YDNVKQATAFGMRSV  134 (161)
Q Consensus       112 DfT~p~~~-~~~~~~al~~g~~vV  134 (161)
                       |+.|+.. .+.+..+.++|+.||
T Consensus        72 -~a~p~~~s~~~~~~~~~~g~~VI   94 (336)
T PRK08040         72 -FVAGREASAAYAEEATNAGCLVI   94 (336)
T ss_pred             -ECCCHHHHHHHHHHHHHCCCEEE
Confidence             7666655 588888889999877

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.46  E-value=1.2e-06  Score=63.81  Aligned_cols=91  Identities=20%  Similarity=0.204  Sum_probs=59.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVIDfT  114 (161)
                      ||+|+|++|++|+.+++.+..++++++++++++. ..|++.....+   +..-.++.+++ +.++.    .+.|+|+..+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE----LAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh----cCCCEEEEcC
Confidence            6899998899999999999999999999997743 34444443221   11101112222 11111    3789999666


Q ss_pred             CchhHHHH---HHHHHHcCCcEE
Q 031341          115 DASTVYDN---VKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~~~~---~~~al~~g~~vV  134 (161)
                      +++.+.+.   +..+++.|+.+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~g~~vi   96 (122)
T smart00859       74 PHGVSKEIAPLLPKAAEAGVKVI   96 (122)
T ss_pred             CcHHHHHHHHHHHhhhcCCCEEE
Confidence            66766664   445568888877

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=98.43  E-value=1.9e-06  Score=81.48  Aligned_cols=123  Identities=19%  Similarity=0.194  Sum_probs=79.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCC-----CCcchhhhhcCCCCCCeeeeCCHHHHHhc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~--------~~eLvavvd~~~-----~g~~~~~~~g~~~~~~i~v~~dl~~~l~~  100 (161)
                      ++++|+|+| .|.+|+.+++.+.+..        +++++++.++..     .|-+...+.... . +..-..+.+.+++.
T Consensus       464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~  540 (819)
T PRK09436        464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREEL-A-EAGEPFDLDRLIRL  540 (819)
T ss_pred             ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHH-h-hccCCCCHHHHHHH
Confidence            579999999 6999999999987543        678899887431     232322221100 0 00001123322211


Q ss_pred             cc-ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCH---HHHHHHHHHhhhcCeee
Q 031341          101 IS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMVS  159 (161)
Q Consensus       101 ~~-~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~---e~~~~L~~~A~~~~Vv~  159 (161)
                      +. .....||+||+|.......+...++++|+|||...-+.-.   +..++|.++|+++++-|
T Consensus       541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~  603 (819)
T PRK09436        541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKF  603 (819)
T ss_pred             HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeE
Confidence            10 0124689999997766677778999999999988764322   68899999999987644

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.41  E-value=4.8e-06  Score=66.97  Aligned_cols=103  Identities=9%  Similarity=0.054  Sum_probs=67.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++||+|+| +|+||+.+++.+.+..  +.+-+.++++.. ......+.   .++++.+++|.++++.      ++|+|+.
T Consensus         4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii   72 (245)
T PRK07634          4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL   72 (245)
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence            47999999 5999999999987653  344233444321 11222222   1346677888988875      6999998


Q ss_pred             ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHH
Q 031341          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSAL  148 (161)
Q Consensus       113 fT~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~L  148 (161)
                      .++|..+.+.+.....  .+..+|.-..|++.+.++.+
T Consensus        73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~  110 (245)
T PRK07634         73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEER  110 (245)
T ss_pred             ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHHH
Confidence            8888877766654332  35556665668888765543

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=98.38  E-value=4.4e-06  Score=70.97  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=57.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -||+|+|++|.+|.++++.|..+|++||+.+.++...           .+      .+.+++++      +.|+++ |+.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~-----------~~------~~~~~~~~------~~D~vF-lal   57 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK-----------DA------AERAKLLN------AADVAI-LCL   57 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc-----------Cc------CCHhHhhc------CCCEEE-ECC
Confidence            4899999999999999999999999999999875320           01      13445543      689999 666


Q ss_pred             chhH-HHHHHHHHHcCCcEE
Q 031341          116 ASTV-YDNVKQATAFGMRSV  134 (161)
Q Consensus       116 p~~~-~~~~~~al~~g~~vV  134 (161)
                      |+.. .+.+..+.+.|+.||
T Consensus        58 p~~~s~~~~~~~~~~g~~VI   77 (310)
T TIGR01851        58 PDDAAREAVSLVDNPNTCII   77 (310)
T ss_pred             CHHHHHHHHHHHHhCCCEEE
Confidence            6555 677788888899776

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.38  E-value=3.3e-06  Score=61.75  Aligned_cols=101  Identities=19%  Similarity=0.255  Sum_probs=69.7

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|+|+|++   ++.|..+++.+.+ .++++.+| ++..     .+      -.|.+.|.++++ .-     ..+|+++-+
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~~-----~~------i~G~~~y~sl~e-~p-----~~iDlavv~   62 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPKG-----GE------ILGIKCYPSLAE-IP-----EPIDLAVVC   62 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STTC-----SE------ETTEE-BSSGGG-CS-----ST-SEEEE-
T ss_pred             EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCCc-----eE------ECcEEeeccccC-CC-----CCCCEEEEE
Confidence            68999987   8899999999986 78887765 2221     11      246788999998 33     489999989


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++|+...+.++.+.+.|+.-|+-.+|   +..+++.++|++.++-.
T Consensus        63 ~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~v  105 (116)
T PF13380_consen   63 VPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRV  105 (116)
T ss_dssp             S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EE
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEE
Confidence            99999999999999999998887777   44556888888876543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.37  E-value=2.1e-06  Score=74.95  Aligned_cols=114  Identities=17%  Similarity=0.164  Sum_probs=77.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhc--CC-CCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCD--ME-QPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g--~~-~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |+||.|+|+ |++|+.++..+..+.+.++. ++|++... .++.+..+  +. -..++.-.+.+.+++.      +.|+|
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~V   72 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLV   72 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEE
Confidence            689999996 99999999999988878877 45543211 12211110  00 0122222345666775      56999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      |.+.+|.-....+++|+++|+++|- |+-. .+...++.+.|+++++.
T Consensus        73 In~~p~~~~~~i~ka~i~~gv~yvD-ts~~-~~~~~~~~~~a~~Agit  118 (389)
T COG1748          73 INAAPPFVDLTILKACIKTGVDYVD-TSYY-EEPPWKLDEEAKKAGIT  118 (389)
T ss_pred             EEeCCchhhHHHHHHHHHhCCCEEE-cccC-CchhhhhhHHHHHcCeE
Confidence            9999999999999999999999765 4322 22237889999998753

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=98.37  E-value=3.7e-06  Score=72.23  Aligned_cols=90  Identities=16%  Similarity=0.182  Sum_probs=66.1

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCcc
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARA  108 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~D  108 (161)
                      +..++||+|+|++|+.|+++++.|.+  +|.++|..+.+....|+.... .+    .++.+ .+++ +.+.      ++|
T Consensus         4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~v-~~~~~~~~~------~~D   71 (344)
T PLN02383          4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYTV-EELTEDSFD------GVD   71 (344)
T ss_pred             cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeEE-EeCCHHHHc------CCC
Confidence            34568999999999999999999998  899999988776556665543 11    12333 2322 3443      799


Q ss_pred             EEEEccCchhH-HHHHHHHHHcCCcEE
Q 031341          109 VVIDFTDASTV-YDNVKQATAFGMRSV  134 (161)
Q Consensus       109 VVIDfT~p~~~-~~~~~~al~~g~~vV  134 (161)
                      +|+ |+.|+.. .+++..+.+.|+.||
T Consensus        72 ~vf-~a~p~~~s~~~~~~~~~~g~~VI   97 (344)
T PLN02383         72 IAL-FSAGGSISKKFGPIAVDKGAVVV   97 (344)
T ss_pred             EEE-ECCCcHHHHHHHHHHHhCCCEEE
Confidence            999 7767665 678888889999887

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.36  E-value=4.3e-06  Score=57.98  Aligned_cols=88  Identities=15%  Similarity=0.097  Sum_probs=59.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ||+++| +|+||..+++.+.+..  ..++.-+.+++.  ....++.   ..+++.++. +..++++      ..|+||-+
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila   68 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELA---KEYGVQATADDNEEAAQ------EADVVILA   68 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence            799999 5999999999998443  277776656543  2333332   134555555 7888886      69999977


Q ss_pred             cCchhHHHHHHH--HHHcCCcEEEe
Q 031341          114 TDASTVYDNVKQ--ATAFGMRSVVY  136 (161)
Q Consensus       114 T~p~~~~~~~~~--al~~g~~vVig  136 (161)
                      ..|....+.+..  ....++.+|.-
T Consensus        69 v~p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   69 VKPQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             ECHHHHHHHHHHHhhccCCCEEEEe
Confidence            788877766654  36777777753

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.34  E-value=4e-06  Score=72.04  Aligned_cols=110  Identities=17%  Similarity=0.176  Sum_probs=70.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eCC---HHHHHhcccccCCccEE
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARAVV  110 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~d---l~~~l~~~~~~~~~DVV  110 (161)
                      |+|+|+ |++|+.+++.|.+..+++-+.+.|++.  .++..+........+..    ..|   +++++.      +.|+|
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~------~~dvV   71 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLR------GCDVV   71 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT------TSSEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHh------cCCEE
Confidence            789998 999999999999998884455777542  11112211000112211    133   444553      67999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      |++..|....+.++.|+++|+|.|-  +.+-.++..+|.+.|+++++.
T Consensus        72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~  117 (386)
T PF03435_consen   72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVT  117 (386)
T ss_dssp             EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSE
T ss_pred             EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCE
Confidence            9999999888999999999999877  434356677888888877653

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=98.31  E-value=5.5e-06  Score=78.28  Aligned_cols=120  Identities=15%  Similarity=0.147  Sum_probs=78.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCCCCCeeeeCCHH---H
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLT---M   96 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~---------~~eLvavvd~~~-----~g~~~~~~~g~~~~~~i~v~~dl~---~   96 (161)
                      ..++|+++| .|.+|+.+++++.+..         +++++++.++..     .|.+...+.....  ......+++   +
T Consensus       457 ~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~e  533 (810)
T PRK09466        457 KRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD--DEAVEWDEESLFL  533 (810)
T ss_pred             ceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH--hhcCCccHHHHHH
Confidence            469999999 6999999999987543         578899998532     2223222221000  011112233   3


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCC---CHHHHHHHHHHhhhcCee
Q 031341           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMV  158 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~---~~e~~~~L~~~A~~~~Vv  158 (161)
                      .+..  .+...+|+||+|.......+...++++|+|||...-.+   ..+..++|.++|+++++-
T Consensus       534 ~i~~--~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~  596 (810)
T PRK09466        534 WLRA--HPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRH  596 (810)
T ss_pred             HHhh--cCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCe
Confidence            3321  01223599999987777777789999999999887643   347888999999998654

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.31  E-value=4.7e-06  Score=66.61  Aligned_cols=90  Identities=22%  Similarity=0.323  Sum_probs=63.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVV  110 (161)
                      ...||+|+|+ |.+|+.+++.+. ...+++++|++|.+..  ..+...     .++++  ++++++++.+    .++|++
T Consensus        83 ~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~--~~~~~i-----~g~~v~~~~~l~~li~~----~~iD~V  150 (213)
T PRK05472         83 RTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPE--KIGTKI-----GGIPVYHIDELEEVVKE----NDIEIG  150 (213)
T ss_pred             CCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChh--hcCCEe-----CCeEEcCHHHHHHHHHH----CCCCEE
Confidence            3579999995 999999998643 4678999999996421  111111     13333  4567777753    579999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEE
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      +.++++..+.+....++++|++.|.
T Consensus       151 iIa~P~~~~~~i~~~l~~~Gi~~il  175 (213)
T PRK05472        151 ILTVPAEAAQEVADRLVEAGIKGIL  175 (213)
T ss_pred             EEeCCchhHHHHHHHHHHcCCCEEe
Confidence            9777777777888999999965553

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=98.29  E-value=7.5e-06  Score=70.12  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=60.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVIDf  113 (161)
                      ||+|+||+|+.|+++++.|.+  +|.++|+.+.+....|+... +.+    .+.. +.+++ +.+.      +.|+|+.+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~-~~~~~~~~~~------~~D~v~~a   68 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELE-VNEAKIESFE------GIDIALFS   68 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEE-EEeCChHHhc------CCCEEEEC
Confidence            699999999999999999988  79999887777555555543 111    1222 22332 2332      79999955


Q ss_pred             cCchhHHHHHHHHHHcCCcEE
Q 031341          114 TDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vV  134 (161)
                      +......+.+..+++.|+.||
T Consensus        69 ~g~~~s~~~a~~~~~~G~~VI   89 (339)
T TIGR01296        69 AGGSVSKEFAPKAAKCGAIVI   89 (339)
T ss_pred             CCHHHHHHHHHHHHHCCCEEE
Confidence            555566788899999998766

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.28  E-value=7.7e-06  Score=70.47  Aligned_cols=88  Identities=18%  Similarity=0.260  Sum_probs=63.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV  109 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e---Lvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DV  109 (161)
                      +.+||+|+||||..|+++++.|.++|+++   |..+.+....|+.+. +.+    .++.+. .+.++ +.      +.|+
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~-~~------~~Di   71 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINS-FE------GVDI   71 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHH-hc------CCCE
Confidence            34899999999999999999999899999   666666555666652 211    134443 23333 33      6999


Q ss_pred             EEEccCchhH-HHHHHHHHHcCCcEE
Q 031341          110 VIDFTDASTV-YDNVKQATAFGMRSV  134 (161)
Q Consensus       110 VIDfT~p~~~-~~~~~~al~~g~~vV  134 (161)
                      ++ |+.|+.. .+.+..+.++|..||
T Consensus        72 vf-~a~~~~~s~~~~~~~~~~G~~VI   96 (347)
T PRK06728         72 AF-FSAGGEVSRQFVNQAVSSGAIVI   96 (347)
T ss_pred             EE-ECCChHHHHHHHHHHHHCCCEEE
Confidence            99 7666555 678888889998877

>PLN02700 homoserine dehydrogenase family protein

Probab=98.27  E-value=6.4e-06  Score=71.68  Aligned_cols=115  Identities=19%  Similarity=0.304  Sum_probs=71.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCC-----C----Ccchhhhhc---CC-CCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS-----V----GEDIGMVCD---ME-QPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~--------~~eLvavvd~~~-----~----g~~~~~~~g---~~-~~~~i~v~--   91 (161)
                      .++|+|+| .|.+|+.+++++.+..        +++++++.++..     .    |-+...+..   .. +..+..-+  
T Consensus         3 ~i~i~liG-~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~   81 (377)
T PLN02700          3 KIPVLLLG-CGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA   81 (377)
T ss_pred             EEEEEEEe-cChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence            48999999 6999999999987643        367889988531     1    333222211   00 01111000  


Q ss_pred             -----------------CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031341           92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (161)
Q Consensus        92 -----------------~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~  154 (161)
                                       .+..+.+..    ...+|+||+|......++...++++|+|||...-+......+++.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~  157 (377)
T PLN02700         82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAH  157 (377)
T ss_pred             ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHc
Confidence                             122232321    35699999998777789999999999999987654433344455555543

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.25  E-value=1.2e-05  Score=65.69  Aligned_cols=101  Identities=10%  Similarity=0.034  Sum_probs=65.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |+||+|+| +|.||+.+++.+.+.. ....+.+++++.  .....+.   ..+++.++.+.++++.      .+|+||.+
T Consensus         2 mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~~------~advVil~   69 (267)
T PRK11880          2 MKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAAQ------EADVVVLA   69 (267)
T ss_pred             CCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHHh------cCCEEEEE
Confidence            68999999 5999999999987542 123455677542  1222221   1235666778888774      78999978


Q ss_pred             cCchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHH
Q 031341          114 TDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSA  147 (161)
Q Consensus       114 T~p~~~~~~~~~al~~-g~~vVigttg~~~e~~~~  147 (161)
                      +.|....+.++....+ +..+|.-+.|.+.++++.
T Consensus        70 v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~~  104 (267)
T PRK11880         70 VKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLER  104 (267)
T ss_pred             cCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHHH
Confidence            8777776766655443 455565556777666553

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=98.24  E-value=5.6e-06  Score=71.00  Aligned_cols=95  Identities=23%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh------hcCCCCCCeeee--C
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV------CDMEQPLEIPVM--S   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--------------~~g~~~~~~------~g~~~~~~i~v~--~   92 (161)
                      ++||+|.|+ |||||.+++.+.+.++++|+++.|+.              .-|+--.++      +-+. ...+.++  .
T Consensus         2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~-g~~i~v~~~~   79 (334)
T PRK08955          2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVIN-GKRIRTTQNK   79 (334)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEEC-CEEEEEEecC
Confidence            389999996 99999999999989999999999831              012110111      1111 1123443  3


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                      ++++...     .++|+|+++|-.....+.+...++.|...|+=
T Consensus        80 ~~~~~~w-----~gvDiVle~tG~~~s~~~a~~hl~aGak~V~i  118 (334)
T PRK08955         80 AIADTDW-----SGCDVVIEASGVMKTKALLQAYLDQGVKRVVV  118 (334)
T ss_pred             ChhhCCc-----cCCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence            6777655     38999998888888889999999999766643

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.23  E-value=1.4e-05  Score=66.27  Aligned_cols=106  Identities=16%  Similarity=0.153  Sum_probs=68.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++||+|+| +|.||+.+++.+. ..++++. ++|++.  .+...+.    ..++.+++++++++.      ++|+||.+.
T Consensus         2 ~~~IgviG-~G~mG~~~a~~l~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIG-LGIMGKPMSKNLL-KAGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITML   66 (296)
T ss_pred             CceEEEEc-cCHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEeC
Confidence            46899999 6999999999987 5678876 567542  1222222    345666788988875      689999666


Q ss_pred             CchhHHHHH-------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          115 DASTVYDNV-------KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       115 ~p~~~~~~~-------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      ++....+.+       ...+..|.-+| -++..++...++|.+..++.+
T Consensus        67 p~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~g  114 (296)
T PRK11559         67 PNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAKG  114 (296)
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHcC
Confidence            544443333       22334455444 344456777777777766543

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.23  E-value=8e-06  Score=70.91  Aligned_cols=85  Identities=14%  Similarity=0.077  Sum_probs=58.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~e---Lvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DV  109 (161)
                      |+||+|+||||..|+++++.+++++++.   ++...+. ..|.....+.|    ....+.+  +.++ +.      ++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g----~~~~v~~~~~~~~-~~------~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGG----KEGTLQDAFDIDA-LK------KLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCC----CcceEEecCChhH-hc------CCCE
Confidence            6899999999999999999888899998   7774443 33333322222    1233333  2333 43      6999


Q ss_pred             EEEccCchhH-HHHHHHHHHcCCc
Q 031341          110 VIDFTDASTV-YDNVKQATAFGMR  132 (161)
Q Consensus       110 VIDfT~p~~~-~~~~~~al~~g~~  132 (161)
                      ++ |+.|+.. .+.+..+.++|++
T Consensus        69 vf-~a~~~~~s~~~~~~~~~aG~~   91 (369)
T PRK06598         69 II-TCQGGDYTNEVYPKLRAAGWQ   91 (369)
T ss_pred             EE-ECCCHHHHHHHHHHHHhCCCC
Confidence            99 7767666 5788888899975

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.21  E-value=8.7e-06  Score=68.68  Aligned_cols=109  Identities=12%  Similarity=0.150  Sum_probs=65.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-------hcCCCCCCeeeeCCHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~-------~g~~~~~~i~v~~dl~~~l~~~~~~~~  106 (161)
                      +|||+|+| .|.||..++..+. ..+.++. +++++.. ...+...       .|......+..++++++++.      .
T Consensus         4 ~m~I~iIG-~G~mG~~ia~~L~-~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~------~   74 (328)
T PRK14618          4 GMRVAVLG-AGAWGTALAVLAA-SKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA------G   74 (328)
T ss_pred             CCeEEEEC-cCHHHHHHHHHHH-HCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc------C
Confidence            57999999 5999999999987 4577755 5564311 0111110       01100112456678888774      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHH--HHHHHHHhh
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCD  153 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~--~~~L~~~A~  153 (161)
                      +|+||-+..+. ..+.+...++.+..+|.-++|+++++  .+.+.+...
T Consensus        75 aD~Vi~~v~~~-~~~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~  122 (328)
T PRK14618         75 ADFAVVAVPSK-ALRETLAGLPRALGYVSCAKGLAPDGGRLSELARVLE  122 (328)
T ss_pred             CCEEEEECchH-HHHHHHHhcCcCCEEEEEeeccccCCCccchHHHHHH
Confidence            89998555444 44444455667777777777876443  445555443

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=98.20  E-value=6.9e-06  Score=70.54  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchh-hh-------hcCCCCCCeeee-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIG-MV-------CDMEQPLEIPVM-   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--------------~g~~~~-~~-------~g~~~~~~i~v~-   91 (161)
                      ++||+|+| .|+|||.+++.+.+.++++|+++.|+..              -|+-.+ ++       +-+. ...+.++ 
T Consensus         5 ~lrVaI~G-~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~-g~~i~v~~   82 (338)
T PLN02358          5 KIRIGING-FGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVFG   82 (338)
T ss_pred             ceEEEEEe-ecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEEC-CEEEEEEE
Confidence            69999999 5999999999998889999999998421              121000 00       0000 1123332 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                       .|++++...   +.++|+|+++|......+.+...+++|...|+
T Consensus        83 ~~~p~~~~w~---~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi  124 (338)
T PLN02358         83 IRNPEDIPWG---EAGADFVVESTGVFTDKDKAAAHLKGGAKKVV  124 (338)
T ss_pred             cCCcccCccc---ccCCCEEEEcccchhhHHHHHHHHHCCCEEEE
Confidence             334444221   24899999989888888999999999975554

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.19  E-value=1.5e-05  Score=65.02  Aligned_cols=101  Identities=11%  Similarity=0.097  Sum_probs=66.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEE--EEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEV--AGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eL--vavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |||+++| +|+||+.+++.+.+. +.++  +.+.+++.  .+..++..   .. ++.++++.+++..      ++|+|+.
T Consensus         1 m~IgiIG-~G~mG~aia~~L~~~-g~~~~~i~v~~r~~--~~~~~l~~---~~~~~~~~~~~~~~~~------~aDvVil   67 (258)
T PRK06476          1 MKIGFIG-TGAITEAMVTGLLTS-PADVSEIIVSPRNA--QIAARLAE---RFPKVRIAKDNQAVVD------RSDVVFL   67 (258)
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhC-CCChheEEEECCCH--HHHHHHHH---HcCCceEeCCHHHHHH------hCCEEEE
Confidence            4899999 599999999999854 3333  45666532  22222221   22 4567788888875      6899997


Q ss_pred             ccCchhHHHHHHHH-HHcCCcEEEeCCCCCHHHHHHHH
Q 031341          113 FTDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALS  149 (161)
Q Consensus       113 fT~p~~~~~~~~~a-l~~g~~vVigttg~~~e~~~~L~  149 (161)
                      .+.|+...+.+... +..+..+|.-..|.+.++++.+.
T Consensus        68 av~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~~  105 (258)
T PRK06476         68 AVRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEWI  105 (258)
T ss_pred             EeCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHh
Confidence            88777666665432 34566677655677777766554

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.17  E-value=3.7e-05  Score=64.35  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +||+++| .|+||+.+++.+. ..+++|+ ++|++.  ....++.    ..+...+.+++++..+   ...+|+|+-+.+
T Consensus         1 m~Ig~IG-lG~mG~~mA~~L~-~~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~---~~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIG-LGKMGGNMAERLR-EDGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSK---LEAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEc-ccHHHHHHHHHHH-hCCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHh---CCCCCEEEEEec
Confidence            4899999 6999999999997 4678877 688643  1222221    3466778899988752   013689886665


Q ss_pred             chhH-HHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          116 ASTV-YDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       116 p~~~-~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      ++.. .+.+...   ++.| .+|+-++..++++..++.+..++.++
T Consensus        69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~  113 (299)
T PRK12490         69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGI  113 (299)
T ss_pred             CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCC
Confidence            5523 3333332   2333 35665555556666667666665554

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.15  E-value=3.8e-05  Score=63.49  Aligned_cols=111  Identities=8%  Similarity=0.102  Sum_probs=69.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~---~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +||+++| +|.||+.+++.+.+..   ..++ .+++++. ......+.   .++++.++.+..++..      ++|+||-
T Consensus         4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v-~v~~r~~-~~~~~~l~---~~~g~~~~~~~~e~~~------~aDvVil   71 (279)
T PRK07679          4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQI-TVSNRSN-ETRLQELH---QKYGVKGTHNKKELLT------DANILFL   71 (279)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCCCcceE-EEECCCC-HHHHHHHH---HhcCceEeCCHHHHHh------cCCEEEE
Confidence            6999999 5999999999998653   2444 4566532 11222222   1346667788888764      6899997


Q ss_pred             ccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       113 fT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      ...|....+.+...   +..+..+|.-..|.+.++++++..  ...||+.+
T Consensus        72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~--~~~~v~r~  120 (279)
T PRK07679         72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQ--KDVPIIRA  120 (279)
T ss_pred             EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCCeEEEE
Confidence            77777766655433   334555555457888777665431  23466653

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=98.15  E-value=1.6e-05  Score=69.29  Aligned_cols=118  Identities=14%  Similarity=0.085  Sum_probs=74.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cc----------------hhhhhcCCCCCCeeee---
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---ED----------------IGMVCDMEQPLEIPVM---   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g---~~----------------~~~~~g~~~~~~i~v~---   91 (161)
                      |-||+|+|+||.+|+..++.+.+.| .+++++++......   +.                ..++.......++.++   
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            4689999999999999999998765 79999998421100   00                0000000001122233   


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      +.+.++++    ..++|+|+....-..+.+.+..|+++|++|.+..-..-......+.+++++.+
T Consensus        81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g  141 (385)
T PRK05447         81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSG  141 (385)
T ss_pred             hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcC
Confidence            23344444    36789999766655667888999999999998543222344556777777654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.14  E-value=3.4e-05  Score=63.98  Aligned_cols=102  Identities=10%  Similarity=0.056  Sum_probs=67.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~---~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |+||+|+| +|.||+.+++.+.+...   .++..+..+..  .....+..   .. ++.++.+.++++.      ++|+|
T Consensus         1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~--~~~~~l~~---~~~~~~~~~~~~e~~~------~aDvV   68 (277)
T PRK06928          1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILYSSSKN--EHFNQLYD---KYPTVELADNEAEIFT------KCDHS   68 (277)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEEeCCcH--HHHHHHHH---HcCCeEEeCCHHHHHh------hCCEE
Confidence            57899999 59999999999885532   56665443321  11111111   12 3455678887764      78999


Q ss_pred             EEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHH
Q 031341          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSAL  148 (161)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L  148 (161)
                      |.++.|....+.+...   +..++.+|+-..|.+.++++.+
T Consensus        69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~  109 (277)
T PRK06928         69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEI  109 (277)
T ss_pred             EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH
Confidence            9777777776666544   4567788887778888776554

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.14  E-value=2.8e-06  Score=63.43  Aligned_cols=92  Identities=22%  Similarity=0.202  Sum_probs=53.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ..+||+|+|+ ||+|..+.+.+. ..+++++++++++... ..+..+.     .+.+ +.++++++.      ++|+++ 
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~-~ag~~v~~v~srs~~sa~~a~~~~-----~~~~-~~~~~~~~~------~aDlv~-   73 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALA-RAGHEVVGVYSRSPASAERAAAFI-----GAGA-ILDLEEILR------DADLVF-   73 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHH-HTTSEEEEESSCHH-HHHHHHC-------TT------TTGGGC------C-SEEE-
T ss_pred             CccEEEEECC-CHHHHHHHHHHH-HCCCeEEEEEeCCccccccccccc-----cccc-ccccccccc------cCCEEE-
Confidence            3599999996 999999999987 6789999998864321 1222211     1223 346677664      799999 


Q ss_pred             ccCchhHHHHHHHHHHcC-----CcEEEeCCCC
Q 031341          113 FTDASTVYDNVKQATAFG-----MRSVVYVPHI  140 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g-----~~vVigttg~  140 (161)
                      .|.|+...+.+-..+...     =.+|+.|.|-
T Consensus        74 iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa  106 (127)
T PF10727_consen   74 IAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGA  106 (127)
T ss_dssp             E-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred             EEechHHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence            777887765444444332     3578888764

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.14  E-value=3e-05  Score=63.24  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=64.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~----eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |||+++| +|.||..+++.+.+. ++    ++....+++.  .....+.    +.|+.+.++.+++..      +.|+||
T Consensus         1 ~kI~~IG-~G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi   66 (266)
T PLN02688          1 FRVGFIG-AGKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVVK------SSDVII   66 (266)
T ss_pred             CeEEEEC-CcHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHHh------cCCEEE
Confidence            6899999 699999999999854 44    6553326532  1222221    357777888888774      689999


Q ss_pred             EccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHH
Q 031341          112 DFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSAL  148 (161)
Q Consensus       112 DfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L  148 (161)
                      ....|....+.+...   +..+..+|+-+.|.+.++.+++
T Consensus        67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~  106 (266)
T PLN02688         67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEW  106 (266)
T ss_pred             EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHH
Confidence            887777666665433   3345555554567776665543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.11  E-value=6.2e-05  Score=62.95  Aligned_cols=111  Identities=12%  Similarity=0.048  Sum_probs=68.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+++| .|.||+.+++.+. ..+.++. ++|++.  .....+.    +.++.++++++++.+.   ..++|+|+-+.+
T Consensus         1 m~Ig~IG-lG~MG~~mA~~L~-~~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~---~~~~dvvi~~v~   68 (301)
T PRK09599          1 MQLGMIG-LGRMGGNMARRLL-RGGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAK---LPAPRVVWLMVP   68 (301)
T ss_pred             CEEEEEc-ccHHHHHHHHHHH-HCCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhh---cCCCCEEEEEec
Confidence            4899999 6999999999997 4578865 577643  1222222    3466778899988752   014788885554


Q ss_pred             ch-hHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          116 AS-TVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       116 p~-~~~~~~---~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +. ...+.+   ...++.|.-+|..+| .+++...++.+.+++.++.|
T Consensus        69 ~~~~~~~v~~~l~~~l~~g~ivid~st-~~~~~~~~~~~~~~~~g~~~  115 (301)
T PRK09599         69 AGEITDATIDELAPLLSPGDIVIDGGN-SYYKDDIRRAELLAEKGIHF  115 (301)
T ss_pred             CCcHHHHHHHHHHhhCCCCCEEEeCCC-CChhHHHHHHHHHHHcCCEE
Confidence            43 223333   333444544444444 44556666777777766554

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=98.08  E-value=1.9e-05  Score=67.80  Aligned_cols=98  Identities=20%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh------hcCCCCCCeeee--C
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV------CDMEQPLEIPVM--S   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--------------~~g~~~~~~------~g~~~~~~i~v~--~   92 (161)
                      ++||+|.| .||+||.+.|.+.+.+++++|++-|+.              .-|+--+++      +-+. ...++++  .
T Consensus         2 ~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~-g~~i~~~~~~   79 (337)
T PTZ00023          2 VVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIG-SKKVHVFFEK   79 (337)
T ss_pred             ceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEEC-CeEEEEEeCC
Confidence            37999999 699999999998878999999997721              011100000      0000 1224443  5


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      |++++-..   +.++|+|+++|......+.+..+++.|...|+=+
T Consensus        80 dp~~lpW~---~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS  121 (337)
T PTZ00023         80 DPAAIPWG---KNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS  121 (337)
T ss_pred             ChhhCCcc---ccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence            56666542   4689999988888888899999999997777543

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=98.06  E-value=1.8e-05  Score=63.02  Aligned_cols=88  Identities=24%  Similarity=0.378  Sum_probs=66.1

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKAR  107 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~--~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~  107 (161)
                      ..+.+|+|+|+ |++|++++..-- ...+++++++.|.+  ..|..         -.+++++  +++++.+.+    .++
T Consensus        82 ~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~---------~~~v~V~~~d~le~~v~~----~dv  147 (211)
T COG2344          82 DKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK---------IGDVPVYDLDDLEKFVKK----NDV  147 (211)
T ss_pred             CcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc---------cCCeeeechHHHHHHHHh----cCc
Confidence            35799999996 999999988655 37899999999953  23322         2356775  677887764    688


Q ss_pred             cEEEEccCchhHH-HHHHHHHHcCCcEEE
Q 031341          108 AVVIDFTDASTVY-DNVKQATAFGMRSVV  135 (161)
Q Consensus       108 DVVIDfT~p~~~~-~~~~~al~~g~~vVi  135 (161)
                      |+.| .|.|..++ +.+....++|+.-|.
T Consensus       148 ~iai-LtVPa~~AQ~vad~Lv~aGVkGIl  175 (211)
T COG2344         148 EIAI-LTVPAEHAQEVADRLVKAGVKGIL  175 (211)
T ss_pred             cEEE-EEccHHHHHHHHHHHHHcCCceEE
Confidence            8888 66676665 677899999987663

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.04  E-value=4.6e-05  Score=63.54  Aligned_cols=109  Identities=13%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |+||+++|+ |+||+.++.-+.+...+  +-+-+.++...  ....+.   ..+++..+++.+++..      ..|+|+.
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e--~~~~l~---~~~g~~~~~~~~~~~~------~advv~L   68 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEE--KRAALA---AEYGVVTTTDNQEAVE------EADVVFL   68 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHH--HHHHHH---HHcCCcccCcHHHHHh------hCCEEEE
Confidence            579999995 99999999999977632  34445655321  111222   2456655677777764      7999998


Q ss_pred             ccCchhHHHHHHHHH--HcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       113 fT~p~~~~~~~~~al--~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .--|....+.+....  ..++.+|+-..|.+.++++.+..   ..+|+
T Consensus        69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~---~~~vv  113 (266)
T COG0345          69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLLG---GLRVV  113 (266)
T ss_pred             EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcC---CCceE
Confidence            888988887777664  47888998888988777554443   44544

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=98.01  E-value=2.9e-05  Score=66.37  Aligned_cols=97  Identities=21%  Similarity=0.203  Sum_probs=63.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccc------hhhhhcCCCCCCeeee--C
Q 031341           37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GED------IGMVCDMEQPLEIPVM--S   92 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~---~~~eLvavvd~~~~-------------g~~------~~~~~g~~~~~~i~v~--~   92 (161)
                      ||+|+|+ |++||.+++.+.+.   ++++++++.|....             |+-      .+..+-+. ...+.++  .
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~i~v~~~~   78 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN-GDCIRVLHSP   78 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC-CeEEEEEEcC
Confidence            6999996 99999999998865   46999999883211             000      00000000 1123343  3


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVigtt  138 (161)
                      +++++...   +.++|+|+++|.+....+.+..++++|.. |++..+
T Consensus        79 ~p~~~~w~---~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        79 TPEALPWR---ALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             Chhhcccc---ccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence            66665431   24899999999888889999999999944 444433

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=98.00  E-value=9.1e-05  Score=65.62  Aligned_cols=108  Identities=17%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           35 NIKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~---G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      +=+|+|+|++   |++|+.+++.+. ..++  ++ ..+++..     .+      -.|+++|.+++++-.      .+|+
T Consensus         7 p~siavvGaS~~~~~~g~~~~~~l~-~~gf~g~v-~~Vnp~~-----~~------i~G~~~~~sl~~lp~------~~Dl   67 (447)
T TIGR02717         7 PKSVAVIGASRDPGKVGYAIMKNLI-EGGYKGKI-YPVNPKA-----GE------ILGVKAYPSVLEIPD------PVDL   67 (447)
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHH-hCCCCCcE-EEECCCC-----Cc------cCCccccCCHHHCCC------CCCE
Confidence            3479999987   789999999997 4455  44 3444321     11      247889999999853      7999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEE-EeCCCCCH------HHHHHHHHHhhhcCeeecC
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vV-igttg~~~------e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ++.+++|+...+.++.|.+.|++.+ +-+.||.+      +..++|.++|++.++-..|
T Consensus        68 avi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        68 AVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             EEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            9989999999999999999998755 54656643      2346899999998765443

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.99  E-value=7.6e-05  Score=62.41  Aligned_cols=107  Identities=9%  Similarity=0.107  Sum_probs=66.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |.||+++| .|.||..+++.+. ..++++ .++|++.  ....++.    ..++....+.+++..      ..|+||-+.
T Consensus         1 m~~Ig~IG-lG~mG~~mA~~l~-~~G~~V-~v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIG-LGQMGSPMASNLL-KQGHQL-QVFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML   65 (296)
T ss_pred             CCeEEEEe-eCHHHHHHHHHHH-HCCCeE-EEEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence            35899999 6999999999997 456776 4677543  2222222    235556678888775      689998555


Q ss_pred             CchhHHHHHH-------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       115 ~p~~~~~~~~-------~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +++...+.+.       ..+..|.-+ +-++..++++.++|.+..++.++
T Consensus        66 p~~~~~~~vl~~~~~i~~~l~~g~lv-id~sT~~p~~~~~l~~~l~~~g~  114 (296)
T PRK15461         66 PNGDLVRSVLFGENGVCEGLSRDALV-IDMSTIHPLQTDKLIADMQAKGF  114 (296)
T ss_pred             CCHHHHHHHHcCcccHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcCC
Confidence            5544333331       123344444 44444667777778777666543

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.99  E-value=3.5e-05  Score=66.03  Aligned_cols=94  Identities=16%  Similarity=0.120  Sum_probs=66.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~-~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++||+|+|+||..|+.+++.|.+ ++.++.+.++.+ ...|+...++.+.    .+.+-++..+....    .+.|+++ 
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~----~~~v~~~~~~~~~~----~~~Divf-   71 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK----SIGVPEDAADEFVF----SDVDIVF-   71 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc----cccCcccccccccc----ccCCEEE-
Confidence            57999999999999999999998 888886666664 4567664454432    23333332232221    4789988 


Q ss_pred             ccCch-hHHHHHHHHHHcCCcEEEeC
Q 031341          113 FTDAS-TVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       113 fT~p~-~~~~~~~~al~~g~~vVigt  137 (161)
                      |+.+. ...++..++.++|..||--+
T Consensus        72 ~~ag~~~s~~~~p~~~~~G~~VIdns   97 (334)
T COG0136          72 FAAGGSVSKEVEPKAAEAGCVVIDNS   97 (334)
T ss_pred             EeCchHHHHHHHHHHHHcCCEEEeCC
Confidence            87764 44789999999998877543

>PRK07680 late competence protein ComER; Validated

Probab=97.99  E-value=7.3e-05  Score=61.58  Aligned_cols=100  Identities=10%  Similarity=0.122  Sum_probs=63.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |||+|+| .|.||+.+++.+.+...+  +-+.+++++.  .....+..   .+ ++.++.+.++++.      ++|+||.
T Consensus         1 m~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~---~~~g~~~~~~~~~~~~------~aDiVil   68 (273)
T PRK07680          1 MNIGFIG-TGNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKE---RYPGIHVAKTIEEVIS------QSDLIFI   68 (273)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHH---HcCCeEEECCHHHHHH------hCCEEEE
Confidence            4799999 599999999998855322  3456777643  12222221   22 5677788888774      7899997


Q ss_pred             ccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHH
Q 031341          113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSA  147 (161)
Q Consensus       113 fT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~  147 (161)
                      ++.|....+.+...   +..+..+|.-+.|.+.++++.
T Consensus        69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~  106 (273)
T PRK07680         69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET  106 (273)
T ss_pred             ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence            77777666655543   334555554445676555444

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.97  E-value=4.4e-05  Score=65.42  Aligned_cols=97  Identities=26%  Similarity=0.230  Sum_probs=66.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee--CCH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SDL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~--~dl   94 (161)
                      +||+|.| .||+||.+.|.+.+.+++|+|++-|..             .-|+--+++      +-+. ...+.++  .++
T Consensus         3 ~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~-g~~I~v~~~~dp   80 (331)
T PRK15425          3 IKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVN-GKKIRVTAERDP   80 (331)
T ss_pred             eEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEEC-CeEEEEEEcCCh
Confidence            7999999 699999999998878999999998731             011110111      0010 1123443  366


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      +++...   +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus        81 ~~~~w~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (331)
T PRK15425         81 ANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMT  120 (331)
T ss_pred             hhCccc---ccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence            665431   2489999988888888889999999997777544

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=97.97  E-value=3e-05  Score=68.60  Aligned_cols=99  Identities=22%  Similarity=0.185  Sum_probs=64.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh-------hcCCCCCCeeee
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV-------CDMEQPLEIPVM   91 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~~~~~~-------~g~~~~~~i~v~   91 (161)
                      .++||+|.| .||+||.+.|.+.+.  +++|+|++-|..             .-|+--.++       +-+. ...+.++
T Consensus        74 ~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~-Gk~I~V~  151 (442)
T PLN02237         74 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVD-GKPIKVV  151 (442)
T ss_pred             ceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEEC-CEEEEEE
Confidence            459999999 699999999987755  789999998731             011100010       0010 1123333


Q ss_pred             C--CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           92 S--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ~--dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      .  +++++-..   +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus       152 ~~~dp~~l~W~---~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS  196 (442)
T PLN02237        152 SNRDPLKLPWA---ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT  196 (442)
T ss_pred             EcCCchhCChh---hcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC
Confidence            2  33344321   2489999998988888899999999997776544

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.96  E-value=3.3e-05  Score=67.65  Aligned_cols=98  Identities=20%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCc---c----hhhhhcCCCCCCeeee-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGE---D----IGMVCDMEQPLEIPVM-   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~---~----~~~~~g~~~~~~i~v~-   91 (161)
                      ++||+|+|+ |++||.+++.+.+.  +.++|+++=|..             ..|+   +    .++.+-+. ...+.++ 
T Consensus        60 ~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~-gk~I~v~~  137 (395)
T PLN03096         60 KIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD-GKVIKVVS  137 (395)
T ss_pred             ccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC-CEEEEEEE
Confidence            389999996 99999999998866  789999886521             0010   0    01111111 1234444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                       .|++++-..   +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus       138 ~~dp~~~~w~---~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS  181 (395)
T PLN03096        138 DRNPLNLPWG---ELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT  181 (395)
T ss_pred             cCCccccccc---ccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence             346665431   2489999999988888889999999997766543

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=97.96  E-value=3e-05  Score=66.66  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~--   91 (161)
                      |+||+|.| .||+||.+.|.+.+.  +++|+|++-|..             .-|+--.++      +-+. ...+.++  
T Consensus         1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~I~v~~~   78 (337)
T PRK07403          1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVN-GKTIKCVSD   78 (337)
T ss_pred             CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEEC-CEEEEEEEc
Confidence            78999999 699999999998766  689999998831             011100000      0010 1224444  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      .|++++-..   +.++|+|+++|......+.+...++.|...|+=+
T Consensus        79 ~dp~~~~W~---~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS  121 (337)
T PRK07403         79 RNPLNLPWK---EWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT  121 (337)
T ss_pred             CCcccCChh---hcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence            344555331   2489999988888888899999999997766533

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=97.93  E-value=5.6e-05  Score=65.08  Aligned_cols=98  Identities=21%  Similarity=0.216  Sum_probs=66.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee--CC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SD   93 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~--~d   93 (161)
                      ++||+|.| .||+||.+.|.+.+.+++|++++-|..             .-|+--.++      +-+. ...+.++  .|
T Consensus         2 ~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~-g~~I~v~~~~d   79 (343)
T PRK07729          2 KTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVD-GKKIRLLNNRD   79 (343)
T ss_pred             ceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEEcCC
Confidence            37999999 699999999998878999999998731             011100011      0010 1123343  46


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ++++-..   +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus        80 p~~~~W~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (343)
T PRK07729         80 PKELPWT---DLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT  120 (343)
T ss_pred             hhhCccc---ccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence            6666442   2489999988888888899999999997776544

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=97.92  E-value=3.6e-05  Score=66.10  Aligned_cols=98  Identities=22%  Similarity=0.243  Sum_probs=65.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCc---c---hhhhhcCCCCCCeeee-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGE---D---IGMVCDMEQPLEIPVM-   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~---~~~eLvavvd~~-------------~~g~---~---~~~~~g~~~~~~i~v~-   91 (161)
                      ++||+|+|+ |++||.+.+.+.+.   ++++++++-|..             .-|+   +   .+..+-+. ...+.++ 
T Consensus         1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~-g~~i~v~~   78 (336)
T PRK13535          1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVG-DDAIRLLH   78 (336)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEE
Confidence            589999996 99999999998864   589999887521             0011   0   01111111 1234444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                       .+++++...   +.++|+|+++|......+.+..++++|...|+=+
T Consensus        79 ~~~p~~~~w~---~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iS  122 (336)
T PRK13535         79 ERDIASLPWR---ELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFS  122 (336)
T ss_pred             cCCcccCccc---ccCCCEEEEccchhhhHHHHHHHHHcCCEEEEec
Confidence             356665431   2489999988888888899999999997666544

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.92  E-value=6.9e-05  Score=62.42  Aligned_cols=100  Identities=16%  Similarity=0.172  Sum_probs=56.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh-------hcCCCCCCeeeeCCHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~-------~g~~~~~~i~v~~dl~~~l~~~~~~~~  106 (161)
                      |+||+|+| .|.||..++..+. ..+.++ .++++...- ..+...       .+...+.++...+++++++.      +
T Consensus         1 mmkI~iiG-~G~mG~~~a~~L~-~~g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~   71 (325)
T PRK00094          1 MMKIAVLG-AGSWGTALAIVLA-RNGHDV-TLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA------D   71 (325)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCEE-EEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh------C
Confidence            67999999 5999999999987 457775 566653110 001100       00000124556778887774      7


Q ss_pred             ccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHH
Q 031341          107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE  143 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e  143 (161)
                      +|+||-++.+....+.+...   +..+..+|.-+.|++.+
T Consensus        72 ~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~  111 (325)
T PRK00094         72 ADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG  111 (325)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC
Confidence            89999565554333333332   33455555444355543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=7.3e-05  Score=61.87  Aligned_cols=94  Identities=19%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc------------chhhhhcCCCCCC-----ee-------ee
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE------------DIGMVCDMEQPLE-----IP-------VM   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~------------~~~~~~g~~~~~~-----i~-------v~   91 (161)
                      |+++++| .||||..+++.+. ..+.++| ++|.+....            .+.++.....+..     +|       +.
T Consensus         1 M~iGmiG-LGrMG~n~v~rl~-~~ghdvV-~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi   77 (300)
T COG1023           1 MQIGMIG-LGRMGANLVRRLL-DGGHDVV-GYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI   77 (300)
T ss_pred             Ccceeec-cchhhHHHHHHHH-hCCCeEE-EEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence            5899999 7999999999997 6788888 456321100            1111111000000     01       11


Q ss_pred             CCHHHHHhcccccCCccEEEEccCc--hhHHHHHHHHHHcCCcEE-EeCC
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDA--STVYDNVKQATAFGMRSV-VYVP  138 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p--~~~~~~~~~al~~g~~vV-igtt  138 (161)
                      +++...|      ..-|+|||-.+.  ....+..+.+.++|+|.+ +||.
T Consensus        78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTS  121 (300)
T COG1023          78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTS  121 (300)
T ss_pred             HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCC
Confidence            2222233      357899997644  455677778899999998 7775

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=97.90  E-value=0.0002  Score=61.51  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=81.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHH--hc--------------------CCcEEEEEEec--CCCCcchhhhhcCCCCC-----
Q 031341           36 IKVIINGAVKEIGRAAVIAVT--KA--------------------RGMEVAGAIDS--HSVGEDIGMVCDMEQPL-----   86 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~--~~--------------------~~~eLvavvd~--~~~g~~~~~~~g~~~~~-----   86 (161)
                      |||+|+|. |+-.+.+++-+.  +.                    .|+|+|+..|.  .+.|+++++..-.. +.     
T Consensus         1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~-pN~t~~~   78 (351)
T TIGR03450         1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFAS-ENNTIKI   78 (351)
T ss_pred             CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcC-CCCceee
Confidence            69999995 999999988653  21                    16799999994  45788877654221 22     


Q ss_pred             ------Ceeee-----C------------------CHHHHHhcccccCCccEEEEccC---chhHHHHHHHHHHcCCcEE
Q 031341           87 ------EIPVM-----S------------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus        87 ------~i~v~-----~------------------dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~g~~vV  134 (161)
                            |+.|.     +                  |+-+.|.    +.++||+|.+-+   -.+..-++.+|++.|++.|
T Consensus        79 ~~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk----~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afV  154 (351)
T TIGR03450        79 ADVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALK----DAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFV  154 (351)
T ss_pred             eccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHH----hcCCCEEEECCccchHHHHHHHHHHHHHcCCceE
Confidence                  22221     1                  3334454    478999997653   2344568889999999999


Q ss_pred             EeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          135 VYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       135 igttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      -++|-+.. ...++.++++++++...|
T Consensus       155 N~~P~~ia-~~p~~a~~f~e~glPi~G  180 (351)
T TIGR03450       155 NALPVFIA-SDPEWAKKFTDAGVPIVG  180 (351)
T ss_pred             eccCcccc-CCHHHHHHHHHCCCCEec
Confidence            99986654 345688888888776655

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.90  E-value=0.00019  Score=58.94  Aligned_cols=94  Identities=7%  Similarity=0.053  Sum_probs=61.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~---eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |||+++| .|.||..+++.+.+...+   ++. +++++..            ..++....+..++..      ++|+||-
T Consensus         4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~~------------~~~~~~~~~~~~~~~------~~D~Vil   63 (260)
T PTZ00431          4 IRVGFIG-LGKMGSALAYGIENSNIIGKENIY-YHTPSKK------------NTPFVYLQSNEELAK------TCDIIVL   63 (260)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHhCCCCCcceEE-EECCChh------------cCCeEEeCChHHHHH------hCCEEEE
Confidence            6999999 599999999999865422   233 3443221            112233456667664      6899998


Q ss_pred             ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHH
Q 031341          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALS  149 (161)
Q Consensus       113 fT~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~L~  149 (161)
                      ++.|....+.+.....  .+..+|+-..|.+.++++.+.
T Consensus        64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~  102 (260)
T PTZ00431         64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMV  102 (260)
T ss_pred             EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHc
Confidence            8888777666654432  245667767788877766553

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.88  E-value=0.00014  Score=60.33  Aligned_cols=101  Identities=9%  Similarity=0.054  Sum_probs=66.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~---~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +||+++| +|+||..+++.+.+..   ..++ -+++++.  .....+.   +++++.++++.++++.      ++|+||-
T Consensus         3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I-~v~~r~~--~~~~~l~---~~~g~~~~~~~~e~~~------~aDiIiL   69 (272)
T PRK12491          3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQI-ICSDLNV--SNLKNAS---DKYGITITTNNNEVAN------SADILIL   69 (272)
T ss_pred             CeEEEEC-ccHHHHHHHHHHHHCCCCCCceE-EEECCCH--HHHHHHH---HhcCcEEeCCcHHHHh------hCCEEEE
Confidence            5899999 5999999999998543   2244 4566532  1222222   1246666778888764      6899997


Q ss_pred             ccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHH
Q 031341          113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALS  149 (161)
Q Consensus       113 fT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~  149 (161)
                      +..|....+.+...   ++.+.-+|+-..|.+.++++++.
T Consensus        70 avkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l  109 (272)
T PRK12491         70 SIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEF  109 (272)
T ss_pred             EeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhc
Confidence            77887766655443   34455566666788887766543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.88  E-value=0.0002  Score=59.97  Aligned_cols=106  Identities=13%  Similarity=0.140  Sum_probs=67.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+++| .|+||..+++.+. ..++++. ++++...   ...+.    ..+.....+..++..      .+|+||-+.+
T Consensus         1 m~Ig~IG-lG~MG~~ma~~L~-~~G~~v~-v~~~~~~---~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIG-LGIMGTPMAINLA-RAGHQLH-VTTIGPV---ADELL----SLGAVSVETARQVTE------ASDIIFIMVP   64 (292)
T ss_pred             CeEEEEc-cCHHHHHHHHHHH-HCCCeEE-EEeCCHh---HHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            4899999 6999999999997 5578776 5665321   12222    345666778888764      7899884443


Q ss_pred             ch-hHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          116 AS-TVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       116 p~-~~~~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .. ...+.+      ...+..|+ +|+-++..++++.+++.+.+++.++-
T Consensus        65 ~~~~v~~v~~~~~g~~~~~~~g~-ivvd~sT~~p~~~~~~~~~~~~~G~~  113 (292)
T PRK15059         65 DTPQVEEVLFGENGCTKASLKGK-TIVDMSSISPIETKRFARQVNELGGD  113 (292)
T ss_pred             ChHHHHHHHcCCcchhccCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            22 223322      11123343 55556667888888888887776653

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.88  E-value=0.00026  Score=59.24  Aligned_cols=93  Identities=14%  Similarity=0.109  Sum_probs=56.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+++| .|+||..+++.+. ..++++.. +|++.  .....+.    +.+...+.+++++.+.   ...+|+|+-+.+
T Consensus         1 M~Ig~IG-lG~mG~~la~~L~-~~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~---~~~~dvIi~~vp   68 (298)
T TIGR00872         1 MQLGLIG-LGRMGANIVRRLA-KRGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQR---LSAPRVVWVMVP   68 (298)
T ss_pred             CEEEEEc-chHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhh---cCCCCEEEEEcC
Confidence            4899999 6999999999987 46888764 77643  1222222    2344445677776532   136899885555


Q ss_pred             chhHHHHH---HHHHHcCCcEEEeCCCC
Q 031341          116 ASTVYDNV---KQATAFGMRSVVYVPHI  140 (161)
Q Consensus       116 p~~~~~~~---~~al~~g~~vVigttg~  140 (161)
                      +..+.+.+   ...++.|.-+|-.+|+.
T Consensus        69 ~~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        69 HGIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             chHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            54333333   33445665555555544

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.86  E-value=0.00025  Score=58.75  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      ||+|+| +|.||+.+++.+. ..++++. ++|++.  .....+.    ..+....+++++++.      +.|+||...+.
T Consensus         1 ~IgvIG-~G~mG~~iA~~l~-~~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIG-LGIMGSPMSINLA-KAGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD   65 (291)
T ss_pred             CEEEEE-ecHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence            699999 6999999999987 4578876 667542  2222221    335555678888875      78999955543


Q ss_pred             hhHHHHHH-------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          117 STVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       117 ~~~~~~~~-------~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      ....+.+.       ..+..|.- |+-++..++.+.++|.+..++.+
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~i-ivd~st~~~~~~~~l~~~l~~~g  111 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGKT-LVDMSSISPIESKRFAKAVKEKG  111 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCCE-EEECCCCCHHHHHHHHHHHHHcC
Confidence            33332221       12233444 44444456666667777666543

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.83  E-value=0.0001  Score=59.95  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee-----eeCCHHHHHhccc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS  102 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~-i~-----v~~dl~~~l~~~~  102 (161)
                      +.+||+|.| +|.+|+.+++.+. ..+++++++.|+.     ..|-|..++.....+.+ +.     .+-+.++++.   
T Consensus        30 ~~~~v~I~G-~G~VG~~~a~~L~-~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~---  104 (227)
T cd01076          30 AGARVAIQG-FGNVGSHAARFLH-EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE---  104 (227)
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence            458999999 6999999999887 5699999999952     34556555543211111 11     1123455555   


Q ss_pred             ccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          103 QSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                        .++||+|.++.++... +++.   +-+..+|+|-.  .++++..+.|    ++.+|+|
T Consensus       105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~rGi~~  155 (227)
T cd01076         105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HERGVLV  155 (227)
T ss_pred             --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HHCCCEE
Confidence              4899999999776663 4444   33588898864  4665555444    4456655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.80  E-value=0.0001  Score=64.96  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=63.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh-------hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV-------CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--------------~g~~~~~~-------~g~~~~~~i~v~--   91 (161)
                      |+||+|.| .||+||.+++.+...++++++++-|+..              -|+-.+++       +-+. ...+.++  
T Consensus        85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~-G~~I~V~~~  162 (421)
T PLN02272         85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEIN-GKQIKVTSK  162 (421)
T ss_pred             ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEEC-CEEEEEEec
Confidence            57999999 6999999999987678999999988310              11100111       0000 1123333  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeC
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYV  137 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVigt  137 (161)
                      .++++....   +.++|+|+++|-.....+.+...++.|. .||+-.
T Consensus       163 ~dp~~~~w~---~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIda  206 (421)
T PLN02272        163 RDPAEIPWG---DFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISA  206 (421)
T ss_pred             CCcccCccc---ccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECC
Confidence            355554431   2379999988877777888888899984 455543

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.78  E-value=6.7e-05  Score=57.18  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~--------g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      ||+|+|+ |.+|..++..+. ..+.++. +..++..        +.+...+.+..-+..+.+++|++++++      ++|
T Consensus         1 KI~ViGa-G~~G~AlA~~la-~~g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad   71 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLA-DNGHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DAD   71 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHH-HCTEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-S
T ss_pred             CEEEECc-CHHHHHHHHHHH-HcCCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------ccc
Confidence            7999995 999999999887 5555544 5554310        111111111111235678899999985      799


Q ss_pred             EEEEccCchhHHH---HHHHHHHcCCcEEEeCCCC
Q 031341          109 VVIDFTDASTVYD---NVKQATAFGMRSVVYVPHI  140 (161)
Q Consensus       109 VVIDfT~p~~~~~---~~~~al~~g~~vVigttg~  140 (161)
                      ++|-.++...+.+   .+..+++.+.++|+-+-|+
T Consensus        72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence            9995555554443   4445567888888877677

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02256 arogenate dehydrogenase

Probab=97.75  E-value=0.00056  Score=57.83  Aligned_cols=78  Identities=15%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +++||+|+| +|.||+.+++.+.+ .+.++.+ +++... .   +.+   ...++..+++.++++.     ..+|+||.+
T Consensus        35 ~~~kI~IIG-~G~mG~slA~~L~~-~G~~V~~-~d~~~~-~---~~a---~~~gv~~~~~~~e~~~-----~~aDvVila   99 (304)
T PLN02256         35 RKLKIGIVG-FGNFGQFLAKTFVK-QGHTVLA-TSRSDY-S---DIA---AELGVSFFRDPDDFCE-----EHPDVVLLC   99 (304)
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEE-EECccH-H---HHH---HHcCCeeeCCHHHHhh-----CCCCEEEEe
Confidence            458999999 69999999999874 4678774 554321 1   111   1345556788888764     368999977


Q ss_pred             cCchhHHHHHHHH
Q 031341          114 TDASTVYDNVKQA  126 (161)
Q Consensus       114 T~p~~~~~~~~~a  126 (161)
                      ++|....+.+...
T Consensus       100 vp~~~~~~vl~~l  112 (304)
T PLN02256        100 TSILSTEAVLRSL  112 (304)
T ss_pred             cCHHHHHHHHHhh
Confidence            7777666666554

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.72  E-value=7.3e-05  Score=59.59  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      |||+|+||+|+.|+++++.+. ..|.|+++++.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn~   34 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRNA   34 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeCh
Confidence            699999999999999999986 8899999999853

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.70  E-value=0.00061  Score=57.40  Aligned_cols=108  Identities=16%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +||+.+| +|.||.-+++.+. ..|+++. ++|++..  ...+.+   ...|.....+..++..      ..|+||-+-+
T Consensus         1 ~kIafIG-LG~MG~pmA~~L~-~aG~~v~-v~~r~~~--ka~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIG-LGIMGSPMAANLL-KAGHEVT-VYNRTPE--KAAELL---AAAGATVAASPAEAAA------EADVVITMLP   66 (286)
T ss_pred             CeEEEEc-CchhhHHHHHHHH-HCCCEEE-EEeCChh--hhhHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence            4899999 7999999999998 6678755 7776532  112222   1347777888878775      7999884433


Q ss_pred             ch-hHHHHHH---HHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          116 AS-TVYDNVK---QAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       116 p~-~~~~~~~---~al---~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .. .+.+.+.   -.+   +.|.-+|-.+| .+++..+++.+.+++.+.-
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~~G~~  115 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAAKGLE  115 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHHHHHHHHHHHHhcCCc
Confidence            33 3333332   122   35666666555 7889999999988887543

>PLN02712 arogenate dehydrogenase

Probab=97.69  E-value=0.00084  Score=62.44  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +++||+|+| .|.||+.+++.+.+ .+.+++ ++|+... .+   .+   .+.|+..+.++++++.     ..+|+||-+
T Consensus       368 ~~~kIgIIG-lG~mG~slA~~L~~-~G~~V~-~~dr~~~-~~---~a---~~~Gv~~~~~~~el~~-----~~aDvVILa  432 (667)
T PLN02712        368 SKLKIAIVG-FGNFGQFLAKTMVK-QGHTVL-AYSRSDY-SD---EA---QKLGVSYFSDADDLCE-----EHPEVILLC  432 (667)
T ss_pred             CCCEEEEEe-cCHHHHHHHHHHHH-CcCEEE-EEECChH-HH---HH---HHcCCeEeCCHHHHHh-----cCCCEEEEC
Confidence            458999999 69999999999974 578877 5665421 11   11   1345556788888764     258999977


Q ss_pred             cCchhHHHHHHHHHH--c-CCcEEEeCCCCCHHHHHHHHHH
Q 031341          114 TDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       114 T~p~~~~~~~~~al~--~-g~~vVigttg~~~e~~~~L~~~  151 (161)
                      ++|....+.+.....  . .-.+|+-.+.......+.+.++
T Consensus       433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~  473 (667)
T PLN02712        433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQH  473 (667)
T ss_pred             CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHh
Confidence            776666665554332  1 1235554432222334444444

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.68  E-value=0.00017  Score=57.26  Aligned_cols=90  Identities=22%  Similarity=0.316  Sum_probs=57.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eCCHHHHHhcccccCCccEEEEc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |+|+|++|+.|+.+++.|.. +++++.+++.... ......+-    ..|+.+    ++|.+.+.+.+   .+.|+|+-.
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al---~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL---KGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH---TTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH---cCCceEEee
Confidence            78999999999999999996 9999999888531 11111111    122211    23434332221   489999977


Q ss_pred             cC---ch---hHHHHHHHHHHcCCcEEEe
Q 031341          114 TD---AS---TVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       114 T~---p~---~~~~~~~~al~~g~~vVig  136 (161)
                      +.   +.   .....+.+|.+.|+..++=
T Consensus        72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~  100 (233)
T PF05368_consen   72 TPPSHPSELEQQKNLIDAAKAAGVKHFVP  100 (233)
T ss_dssp             SSCSCCCHHHHHHHHHHHHHHHT-SEEEE
T ss_pred             cCcchhhhhhhhhhHHHhhhccccceEEE
Confidence            65   22   3346778999999888864

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02712 arogenate dehydrogenase

Probab=97.66  E-value=0.00074  Score=62.78  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=64.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++++||+|+| .|+||+.+++.+.+. ++++++ +|+... ..   .+   ...|+..+.+++++..     ..+|+||.
T Consensus        50 ~~~~kIgIIG-~G~mG~slA~~L~~~-G~~V~~-~dr~~~-~~---~A---~~~Gv~~~~d~~e~~~-----~~aDvViL  114 (667)
T PLN02712         50 TTQLKIAIIG-FGNYGQFLAKTLISQ-GHTVLA-HSRSDH-SL---AA---RSLGVSFFLDPHDLCE-----RHPDVILL  114 (667)
T ss_pred             CCCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEE-EeCCHH-HH---HH---HHcCCEEeCCHHHHhh-----cCCCEEEE
Confidence            3568999999 699999999998754 788765 554321 11   11   1346666788888664     36899997


Q ss_pred             ccCchhHHHHHHHHH-Hc-C-CcEEEeCCCCCHHHHHHHHHHh
Q 031341          113 FTDASTVYDNVKQAT-AF-G-MRSVVYVPHIQLETVSALSAFC  152 (161)
Q Consensus       113 fT~p~~~~~~~~~al-~~-g-~~vVigttg~~~e~~~~L~~~A  152 (161)
                      +++|....+.+.... .+ + -.+|+-++.....-.+.+.+..
T Consensus       115 avP~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l  157 (667)
T PLN02712        115 CTSIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL  157 (667)
T ss_pred             cCCHHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence            777766666555432 21 1 2355544433333334444443

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.64  E-value=0.00023  Score=59.00  Aligned_cols=87  Identities=17%  Similarity=0.315  Sum_probs=58.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee------CCHHHHHhcccccCCccE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM------SDLTMVLGSISQSKARAV  109 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~------~dl~~~l~~~~~~~~~DV  109 (161)
                      +||.|.|+||- |+.+++.+.+ .+.++++-+.... +...-.-     ..+.++.      .++.+.+.    +.++|+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~~~~-----~g~~~v~~g~l~~~~l~~~l~----~~~i~~   68 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHLYPI-----HQALTVHTGALDPQELREFLK----RHSIDI   68 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-ccccccc-----cCCceEEECCCCHHHHHHHHH----hcCCCE
Confidence            58999999998 9999999874 4788887666432 2211110     0112222      33444554    368999


Q ss_pred             EEEccCchhH--HHH-HHHHHHcCCcEE
Q 031341          110 VIDFTDASTV--YDN-VKQATAFGMRSV  134 (161)
Q Consensus       110 VIDfT~p~~~--~~~-~~~al~~g~~vV  134 (161)
                      |||+|+|-+.  -++ ...|.+.|+|.+
T Consensus        69 VIDAtHPfA~~is~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        69 LVDATHPFAAQITTNATAVCKELGIPYV   96 (256)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence            9999999765  244 478899999988

This enzyme was found to be a monomer by gel filtration.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=0.00052  Score=57.56  Aligned_cols=80  Identities=19%  Similarity=0.096  Sum_probs=52.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +||+|+| +|.||+.+++.+. ..+.++. +++++..                   .+++++++      +.|+|| ++.
T Consensus         5 m~I~iiG-~G~~G~~lA~~l~-~~G~~V~-~~~r~~~-------------------~~~~~~~~------~advvi-~~v   55 (308)
T PRK14619          5 KTIAILG-AGAWGSTLAGLAS-ANGHRVR-VWSRRSG-------------------LSLAAVLA------DADVIV-SAV   55 (308)
T ss_pred             CEEEEEC-ccHHHHHHHHHHH-HCCCEEE-EEeCCCC-------------------CCHHHHHh------cCCEEE-EEC
Confidence            7899999 5999999999987 5578865 6665321                   36677764      789988 555


Q ss_pred             chhHH-HHHHHH----HHcCCcEEEeCCCCCHHH
Q 031341          116 ASTVY-DNVKQA----TAFGMRSVVYVPHIQLET  144 (161)
Q Consensus       116 p~~~~-~~~~~a----l~~g~~vVigttg~~~e~  144 (161)
                      |.... +.+...    +..++-+|..++|++++.
T Consensus        56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~   89 (308)
T PRK14619         56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPET   89 (308)
T ss_pred             ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCC
Confidence            55443 333332    233555666666676544

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.63  E-value=0.00048  Score=61.97  Aligned_cols=117  Identities=9%  Similarity=0.079  Sum_probs=71.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeeeCCHHHHHhcccccCCccE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~---i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      +.+.+|+++| +|.||+.+++.+. ..+++|+ |.|++..  +..++.......|   +..+++++++.+.+   ..+|+
T Consensus         4 ~~~~~IG~IG-LG~MG~~mA~nL~-~~G~~V~-V~NRt~~--k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dv   75 (493)
T PLN02350          4 AALSRIGLAG-LAVMGQNLALNIA-EKGFPIS-VYNRTTS--KVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRS   75 (493)
T ss_pred             CCCCCEEEEe-eHHHHHHHHHHHH-hCCCeEE-EECCCHH--HHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCE
Confidence            3457899999 7999999999998 5688866 7886532  2222221000112   23568899887532   25898


Q ss_pred             EEEccCch--hHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          110 VIDFTDAS--TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       110 VIDfT~p~--~~~~~---~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      || ...|+  .+.+.   +...++.|.-+|-++| .++++..++.+.+++.++-|
T Consensus        76 Ii-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~Gi~f  128 (493)
T PLN02350         76 VI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEKGLLY  128 (493)
T ss_pred             EE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHcCCeE
Confidence            88 44443  22333   3445556655554444 55667777777777766544

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.61  E-value=0.00013  Score=62.00  Aligned_cols=91  Identities=12%  Similarity=0.075  Sum_probs=63.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCC--CeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPL--EIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~-~~~~--~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      -+++|+| +|.+|+.+++.+....+++-+.+++++..  +..++... ....  .+..++++++++.      ++|+||-
T Consensus       128 ~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~  198 (325)
T PRK08618        128 KTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFE--KAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT  198 (325)
T ss_pred             cEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHH--HHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence            4799999 59999999998887789999999997531  22222210 0112  3455789999885      7999995


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE-EeC
Q 031341          113 FTDASTVYDNVKQATAFGMRSV-VYV  137 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vV-igt  137 (161)
                      +| |..+.... ..++.|+||. +|.
T Consensus       199 aT-~s~~p~i~-~~l~~G~hV~~iGs  222 (325)
T PRK08618        199 VT-NAKTPVFS-EKLKKGVHINAVGS  222 (325)
T ss_pred             cc-CCCCcchH-HhcCCCcEEEecCC
Confidence            55 55554444 7889999986 554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.61  E-value=0.00096  Score=56.15  Aligned_cols=99  Identities=18%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~--------g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      |||+|+|+ |.||..++..+. ..+.++. ++++...        +.+...+.+...+.++.+++++++.+.     ..+
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~-~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALS-SKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHH-HCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence            58999996 999999999887 4567765 6665311        001110112111234667788888763     378


Q ss_pred             cEEEEccCchhHHHHHHHHH----HcCCcEEEeCCCCCH
Q 031341          108 AVVIDFTDASTVYDNVKQAT----AFGMRSVVYVPHIQL  142 (161)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al----~~g~~vVigttg~~~  142 (161)
                      |++|-++.+....+.+....    ..+.++|+.+-|+..
T Consensus        73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            99996666655555554433    345567776667643

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.61  E-value=0.00067  Score=58.87  Aligned_cols=104  Identities=19%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC-CC-----------cchhhhhcCCCCCCeeeeCCHH
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS-VG-----------EDIGMVCDMEQPLEIPVMSDLT   95 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~------~~eLvavvd~~~-~g-----------~~~~~~~g~~~~~~i~v~~dl~   95 (161)
                      +++||+|+| +|.+|.+++..+.+..      +.++.--..++. .+           .+..-+.|+.-+.++..++|++
T Consensus        10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345         10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence            468999999 5999999999987542      134332222221 11           1111122332234566789999


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHHHHH-----HHcCCcEEEeCCCCCHHH
Q 031341           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQA-----TAFGMRSVVYVPHIQLET  144 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~a-----l~~g~~vVigttg~~~e~  144 (161)
                      ++++      +.|+||-..+|....+.+...     +..+..+|+.+.|++.++
T Consensus        89 eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         89 EAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             HHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence            8885      789988566666555555443     333456777777876544

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=97.57  E-value=0.00035  Score=60.50  Aligned_cols=97  Identities=22%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEecC--------------CCCcchhhh--------------hcC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDSH--------------SVGEDIGMV--------------CDM   82 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~----~~~eLvavvd~~--------------~~g~~~~~~--------------~g~   82 (161)
                      ++||+|.| .||+||.+.|.+.+.    +++|+|++-|+.              .-|+--.++              +-+
T Consensus         3 ~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i   81 (361)
T PTZ00434          3 PIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV   81 (361)
T ss_pred             ceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence            47999999 699999999998764    689999998831              012100000              000


Q ss_pred             CCCCCeeee---CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEe
Q 031341           83 EQPLEIPVM---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVY  136 (161)
Q Consensus        83 ~~~~~i~v~---~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g-~~vVig  136 (161)
                      . ...+.++   .|++++-..   +.++|+|||+|---...+.+..-++.| +.||+-
T Consensus        82 n-g~~I~~~~~~~dP~~ipW~---~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiS  135 (361)
T PTZ00434         82 N-GHRIKCVKAQRNPADLPWG---KLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVIS  135 (361)
T ss_pred             C-CEEEEEEEecCChhhCchh---hcCCCEEEeCceeeccHHHHhhhhhcCCCEEEEC
Confidence            0 1124443   466666442   358999999885555555555666666 555553

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.54  E-value=0.00081  Score=57.65  Aligned_cols=112  Identities=17%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC------CCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------SVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~------~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      |+||+|+|+ |..|..++..+. ..+.++.--..++      ... .+..-+-|+.-+.++..++|++++++      ++
T Consensus         1 ~~kI~ViGa-GswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence            579999995 999999999887 4444443222210      011 12111223323556778899999995      69


Q ss_pred             cEEEEccCchhHH-HHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341          108 AVVIDFTDASTVY-DNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (161)
Q Consensus       108 DVVIDfT~p~~~~-~~~~---~al~~g~~vVigttg~~~e~~~~L~~~A~~~  155 (161)
                      |+++ +..|.... +.+.   ..+..+.++|+.+-|+.++..+.+.++.++.
T Consensus        73 d~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~  123 (329)
T COG0240          73 DIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE  123 (329)
T ss_pred             CEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence            9998 66666554 3333   3567888999988898877777777766654

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.54  E-value=0.00029  Score=53.55  Aligned_cols=83  Identities=23%  Similarity=0.250  Sum_probs=51.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCH---HHHHhcccccCCccEEEE
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL---TMVLGSISQSKARAVVID  112 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl---~~~l~~~~~~~~~DVVID  112 (161)
                      |.|.|++|.+|+.+++.+.+.. .++.+++.+..   +..+..    ...+..  +.|.   .+++      .++|+||+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~---~~~~~~----~~~~~~~d~~d~~~~~~al------~~~d~vi~   66 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPS---KAEDSP----GVEIIQGDLFDPDSVKAAL------KGADAVIH   66 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG---GHHHCT----TEEEEESCTTCHHHHHHHH------TTSSEEEE
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEecCch---hccccc----ccccceeeehhhhhhhhhh------hhcchhhh
Confidence            7899999999999999998554 99999998532   111111    111111  1333   4455      38999997


Q ss_pred             ccCc----hh-HHHHHHHHHHcCCcEE
Q 031341          113 FTDA----ST-VYDNVKQATAFGMRSV  134 (161)
Q Consensus       113 fT~p----~~-~~~~~~~al~~g~~vV  134 (161)
                      +..|    .. ....+..+.++|++-+
T Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~   93 (183)
T PF13460_consen   67 AAGPPPKDVDAAKNIIEAAKKAGVKRV   93 (183)
T ss_dssp             CCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred             hhhhhcccccccccccccccccccccc
Confidence            6643    12 2334455667786544

...

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.53  E-value=0.0013  Score=54.69  Aligned_cols=103  Identities=13%  Similarity=0.128  Sum_probs=66.4

Q ss_pred             EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCchhH
Q 031341           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV  119 (161)
Q Consensus        40 ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~  119 (161)
                      ++| +|.||..+++.+. ..++++. ++|++.  .....+.    +.++...++++++++      +.|+||-+.++...
T Consensus         1 ~IG-lG~mG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIG-LGNMGGPMAANLL-KAGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH   65 (288)
T ss_pred             CCc-ccHhHHHHHHHHH-hCCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence            478 6999999999997 5577754 567543  1222222    345666788888875      68999955554333


Q ss_pred             -HHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          120 -YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       120 -~~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                       .+.+      ...+..|. +|+-+++.+++..+++.+.+++.++-
T Consensus        66 ~~~v~~g~~~l~~~~~~g~-~vid~st~~p~~~~~~~~~~~~~g~~  110 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGS-LLIDCSTIDPDSARKLAELAAAHGAV  110 (288)
T ss_pred             HHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCc
Confidence             3332      22334444 45555568888888898888776543

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.53  E-value=0.0017  Score=58.12  Aligned_cols=116  Identities=13%  Similarity=0.140  Sum_probs=69.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |.+|+|+| .|.||+.+++.+. ..++++. ++|++..  ...++.......+  +..+++++++...+   .++|+|+-
T Consensus         1 ~~~IgvIG-LG~MG~~lA~nL~-~~G~~V~-v~dr~~~--~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIG-LAVMGQNLALNIA-SRGFKIS-VYNRTYE--KTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL   72 (470)
T ss_pred             CCEEEEEe-EhHHHHHHHHHHH-HCCCeEE-EEeCCHH--HHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence            46899999 6999999999997 5678754 7786431  1112211000113  34578999987531   25897775


Q ss_pred             ccCch-hHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDAS-TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~-~~~~~---~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +-+|. .+.+.   +...++.|.-+|-++|+...+. .++.+..++.++-|
T Consensus        73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt-~~r~~~l~~~Gi~f  122 (470)
T PTZ00142         73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNT-ERRIKRCEEKGILY  122 (470)
T ss_pred             EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHH-HHHHHHHHHcCCeE
Confidence            64443 33333   3445667777777777654444 44445555555544

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=97.52  E-value=0.00095  Score=59.43  Aligned_cols=118  Identities=9%  Similarity=0.080  Sum_probs=71.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hhc-CCC-CCCeeeeC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCD-MEQ-PLEIPVMS   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g---~~~~~----------------~~g-~~~-~~~i~v~~   92 (161)
                      +.||+|.|+||.+|+..++.+.++|+ ++++++.......   ..+.+                +-. +.. ..+..++.
T Consensus        57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~  136 (454)
T PLN02696         57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP  136 (454)
T ss_pred             ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence            47999999999999999999987755 9999998843210   00000                000 000 00223333


Q ss_pred             ---CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341           93 ---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus        93 ---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                         ++.++..    ..++|+|+..-.=-+...-...|+++|++|....-..=..-.+.|.+++++.+
T Consensus       137 G~egl~~la~----~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~  199 (454)
T PLN02696        137 GEEGIVEVAR----HPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHG  199 (454)
T ss_pred             CHHHHHHHHc----CCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcC
Confidence               4444444    36789998655544455666889999999988543211222345666776654

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.50  E-value=0.0018  Score=57.31  Aligned_cols=104  Identities=17%  Similarity=0.208  Sum_probs=62.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+|+|++|.||+.+++.+. ..+.++. +++++.  ....+.+   ...++...++.++++.      ++|+||.+++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~-~~G~~V~-v~~r~~--~~~~~~a---~~~gv~~~~~~~e~~~------~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLK-EKGFEVI-VTGRDP--KKGKEVA---KELGVEYANDNIDAAK------DADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHH-HCCCEEE-EEECCh--HHHHHHH---HHcCCeeccCHHHHhc------cCCEEEEecC
Confidence            589999867999999999987 4567765 455432  1111222   1345556678888774      7899997776


Q ss_pred             chhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341          116 ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus       116 p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                      ++...+.+.....   .+. +|+-.+.......+.+.+...
T Consensus        68 ~~~~~~vl~~l~~~l~~~~-iViDvsSvK~~~~~~l~~~~~  107 (437)
T PRK08655         68 INVTEDVIKEVAPHVKEGS-LLMDVTSVKERPVEAMEEYAP  107 (437)
T ss_pred             HHHHHHHHHHHHhhCCCCC-EEEEcccccHHHHHHHHHhcC
Confidence            6655555544433   333 444333333444556665543

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.50  E-value=0.00034  Score=59.01  Aligned_cols=107  Identities=16%  Similarity=0.243  Sum_probs=82.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc--EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA--VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D--VVIDf  113 (161)
                      +|.|+|  -+.|...+...... |+++|+|+.....  ++..+++   ..+|+|.|...|++-+      .+|  +|+.=
T Consensus         6 sVvV~G--trFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVvVr   72 (361)
T COG4693           6 SVVVCG--TRFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVVVR   72 (361)
T ss_pred             eEEEec--chHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEEEe
Confidence            899999  59999999988876 9999999998432  2334444   3679999999999875      566  33323


Q ss_pred             cC--chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          114 TD--ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       114 T~--p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +.  -....+.++..+++|++|+.+-+ +-++++..|.++|++-+-
T Consensus        73 sai~Gg~Gs~larall~RGi~VlqEHP-l~p~di~~l~rlA~rqG~  117 (361)
T COG4693          73 SAIVGGQGSALARALLARGIHVLQEHP-LHPRDIQDLLRLAERQGR  117 (361)
T ss_pred             eeeecCCcHHHHHHHHHcccHHHHhCC-CCHHHHHHHHHHHHHhCc
Confidence            32  23446888999999999999887 667899999999998653

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=97.49  E-value=0.00058  Score=56.56  Aligned_cols=100  Identities=15%  Similarity=0.228  Sum_probs=82.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .||.+-|.+|+-|.-+.++.+ .-+..+|+.+.+...|.         ..+|.|+|.+++|+.++    .++|+-+.|-+
T Consensus        39 TkVi~QGfTGKqgTFHs~q~~-eYgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyVP  104 (329)
T KOG1255|consen   39 TKVICQGFTGKQGTFHSQQAL-EYGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYVP  104 (329)
T ss_pred             ceEEEecccCCccceeHHHHH-HhCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEeC
Confidence            799999999999999999877 67899999999765442         25688999999999885    88998777999


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHH
Q 031341          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALS  149 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~  149 (161)
                      |.....-+..++++-+++++.-| |....+.-++.
T Consensus       105 pp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk  139 (329)
T KOG1255|consen  105 PPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVK  139 (329)
T ss_pred             ChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHH
Confidence            99999999999999999998866 66544443333

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.44  E-value=0.00023  Score=61.21  Aligned_cols=98  Identities=12%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCC--------cEEEEEEecCC-------------CCcchhhhhcCCCCCCeeeeCCHH
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSHS-------------VGEDIGMVCDMEQPLEIPVMSDLT   95 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~--------~eLvavvd~~~-------------~g~~~~~~~g~~~~~~i~v~~dl~   95 (161)
                      ||+|+| +|.+|..++..+.. .+        .++.- ..+..             ...+...+.|+.-+.++.+++|++
T Consensus         1 kI~VIG-aG~wGtALA~~la~-ng~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~   77 (342)
T TIGR03376         1 RVAVVG-SGNWGTAIAKIVAE-NARALPELFEESVRM-WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLV   77 (342)
T ss_pred             CEEEEC-cCHHHHHHHHHHHH-cCCcccccCCceEEE-EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHH
Confidence            689999 59999999998874 33        44332 32210             001111112321123466789999


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHH---HHHHHcCCcEEEeCCCCCHH
Q 031341           96 MVLGSISQSKARAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLE  143 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~---~~al~~g~~vVigttg~~~e  143 (161)
                      +++.      ++|++|-..++....+.+   ...++.+.++|+-+-|++.+
T Consensus        78 eal~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        78 EAAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             HHHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            9885      789988444444443434   33456677888888788765

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.41  E-value=0.0038  Score=52.20  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=57.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .||+|+| +|.||+.+++.+.+. +. .-+.++|+...  ......    +.++  .+..+.++++.      ++|+||.
T Consensus         7 ~~I~IIG-~G~mG~sla~~l~~~-g~~~~V~~~dr~~~--~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVii   72 (307)
T PRK07502          7 DRVALIG-IGLIGSSLARAIRRL-GLAGEIVGADRSAE--TRARAR----ELGLGDRVTTSAAEAVK------GADLVIL   72 (307)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHhc-CCCcEEEEEECCHH--HHHHHH----hCCCCceecCCHHHHhc------CCCEEEE
Confidence            6899999 699999999998754 43 23446675421  111111    1222  34567777764      7999997


Q ss_pred             ccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHH
Q 031341          113 FTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       113 fT~p~~~~~~~~~---al~~g~~vVigttg~~~e~~~~L~~~  151 (161)
                      ++++....+.+..   +++.+. +|+-..+.+.+..+.+.+.
T Consensus        73 avp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~  113 (307)
T PRK07502         73 CVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPH  113 (307)
T ss_pred             CCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHh
Confidence            7766554444433   333444 4443444444555555444

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=97.39  E-value=0.00068  Score=58.09  Aligned_cols=96  Identities=24%  Similarity=0.200  Sum_probs=62.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh-------hcCCCCC-Ceeee--
Q 031341           37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV-------CDMEQPL-EIPVM--   91 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~~~~~~-------~g~~~~~-~i~v~--   91 (161)
                      ||+|.| .||+||.+.|.+.+.  +++++|++-|..             .-|+--.++       +-+. .. .+.++  
T Consensus         1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~-g~~~i~v~~~   78 (327)
T TIGR01534         1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVN-GKFVIVVASE   78 (327)
T ss_pred             CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEEC-CeEEEEEEec
Confidence            799999 699999999998876  589999998831             012100000       0010 11 23333  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      .++++....   +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus        79 ~dp~~~~w~---~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS  121 (327)
T TIGR01534        79 RDPSDLPWK---ALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS  121 (327)
T ss_pred             CCcccCchh---hcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence            255554331   2479999988888888888999999997766533

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.37  E-value=0.0026  Score=50.78  Aligned_cols=98  Identities=14%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCCCCCCe--ee-eCCHHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEI--PV-MSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~-~~g~~~~~~i--~v-~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |||+|+|++|.||+.+++.+.+ .+.++. ++++.... ....+ ........++  .+ ..+..+++.      .+|+|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~------~aDvV   72 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAK-AGNKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK------RADVV   72 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh-CCCEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh------cCCEE
Confidence            5899997569999999999974 567776 44643210 11111 0000001121  12 235556664      68999


Q ss_pred             EEccCchhHHHHHHHHHH--cCCcEEEeCCCCC
Q 031341          111 IDFTDASTVYDNVKQATA--FGMRSVVYVPHIQ  141 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~--~g~~vVigttg~~  141 (161)
                      |-+..|....+.+.....  .++-+|.-+-|++
T Consensus        73 ilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~  105 (219)
T TIGR01915        73 ILAVPWDHVLKTLESLRDELSGKLVISPVVPLA  105 (219)
T ss_pred             EEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence            966666655555443321  3443444333544

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.36  E-value=0.0013  Score=53.07  Aligned_cols=104  Identities=13%  Similarity=0.143  Sum_probs=65.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-CCCCeeee-----CCHHHHHhcccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSISQ  103 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~-~~~~i~v~-----~dl~~~l~~~~~  103 (161)
                      ..||+|.| +|++|+.+++.|. ..+..+|++.|.+     . |-+..++.... ...++..+     .+-++++.    
T Consensus        23 g~~vaIqG-fGnVG~~~a~~L~-~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----   95 (217)
T cd05211          23 GLTVAVQG-LGNVGWGLAKKLA-EEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG----   95 (217)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee----
Confidence            48999999 6999999999987 4589999999953     3 44443333211 01122222     13345554    


Q ss_pred             cCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSAL  148 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~L  148 (161)
                       .++|++|.++..+..  +...+.+.+.++|+|..  .++++..+.|
T Consensus        96 -~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L  139 (217)
T cd05211          96 -LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL  139 (217)
T ss_pred             -ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH
Confidence             489999988765533  22334467799999864  3556544444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.00056  Score=58.42  Aligned_cols=103  Identities=15%  Similarity=0.208  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc------CchhHHH
Q 031341           48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD  121 (161)
Q Consensus        48 Gr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~  121 (161)
                      |+...-.+...+-+.+++++|+...+.+....++- ...++|+.++++++++.     ..|+++.-.      .|....+
T Consensus        15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~-~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~   88 (339)
T COG3367          15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGG-DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWRE   88 (339)
T ss_pred             chhhhhhhcccccceeeeEEeeeccccccHHHhCC-ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHH
Confidence            44333334445559999999977666444433333 26799999999999973     458766544      3456668


Q ss_pred             HHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       122 ~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .+..|+++|++||.|---+ .++...+.++|++.++
T Consensus        89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~  123 (339)
T COG3367          89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGV  123 (339)
T ss_pred             HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCC
Confidence            9999999999999876545 6778899999999876

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.36  E-value=0.002  Score=54.78  Aligned_cols=119  Identities=18%  Similarity=0.183  Sum_probs=79.2

Q ss_pred             cceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhc
Q 031341           21 AKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        21 ~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~  100 (161)
                      +..-++++..+++. .|||-+| .|.||+.+++.|. ..++.+. |+|+...  ..-++    +..|..+.+++.|+.+ 
T Consensus        22 ~~~~~~s~~~~~s~-~~iGFIG-LG~MG~~M~~nLi-k~G~kVt-V~dr~~~--k~~~f----~~~Ga~v~~sPaeVae-   90 (327)
T KOG0409|consen   22 ASETAMSSRITPSK-TRIGFIG-LGNMGSAMVSNLI-KAGYKVT-VYDRTKD--KCKEF----QEAGARVANSPAEVAE-   90 (327)
T ss_pred             cccccccccCCccc-ceeeEEe-eccchHHHHHHHH-HcCCEEE-EEeCcHH--HHHHH----HHhchhhhCCHHHHHh-
Confidence            33347777777755 8999999 7999999999998 5678765 7886531  12233    2457788899999985 


Q ss_pred             ccccCCccEEEEc-cCchhHHHHHH------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341          101 ISQSKARAVVIDF-TDASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (161)
Q Consensus       101 ~~~~~~~DVVIDf-T~p~~~~~~~~------~al~~g~~vVigttg~~~e~~~~L~~~A~~~  155 (161)
                           ..|++|-. +.|..+.+.+.      ..+..|.+..+-.+..+++...+|.+.++..
T Consensus        91 -----~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~  147 (327)
T KOG0409|consen   91 -----DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK  147 (327)
T ss_pred             -----hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence                 78987742 34444444332      2333555553444447788888887776654

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.35  E-value=0.00086  Score=55.94  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=28.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |||.|.|++|.+|+.+++.+. ..+.++.++..+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll-~~g~~V~~l~R~   33 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQAL-DEGYQVRCLVRN   33 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCeEEEEEcC
Confidence            589999999999999999988 458998888764

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.35  E-value=0.0015  Score=58.21  Aligned_cols=106  Identities=13%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC-----------CeeeeCCHHHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL-----------EIPVMSDLTMVL   98 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-----~~~g~~~~~~~g~~~~~-----------~i~v~~dl~~~l   98 (161)
                      ..||+|.| .|++|+..++.+. ..+.+|+++.|+     ...|-|..++.......           +.. +.+.++++
T Consensus       232 g~rVaIqG-fGnVG~~~A~~L~-~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~  308 (445)
T PRK09414        232 GKRVVVSG-SGNVAIYAIEKAQ-QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPW  308 (445)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccc
Confidence            37999999 6999999999887 578999999994     24566655443221100           111 12445555


Q ss_pred             hcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSAL  148 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L  148 (161)
                      .     .++||+|-++..+.. .+++....+++..+|+|-.  .++++..+.|
T Consensus       309 ~-----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L  356 (445)
T PRK09414        309 S-----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF  356 (445)
T ss_pred             c-----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH
Confidence            4     589999988876555 5778877788999999864  3466655555

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.31  E-value=0.0022  Score=53.08  Aligned_cols=99  Identities=17%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ee-eeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-VMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~-i~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +||+|+| +|.||..++..+.+ .+.++. ++|+...  ......    ..+ +. ..++.+ .+.      ++|+||.+
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~-~g~~V~-~~d~~~~--~~~~a~----~~g~~~~~~~~~~-~~~------~aDlVila   64 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRS-LGHTVY-GVSRRES--TCERAI----ERGLVDEASTDLS-LLK------DCDLVILA   64 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEECCHH--HHHHHH----HCCCcccccCCHh-Hhc------CCCEEEEc
Confidence            4899999 69999999999874 477754 5564321  111111    112 11 223443 443      79999977


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHH
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSA  150 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg~~~e~~~~L~~  150 (161)
                      +++....+.+.....+  ...+|+-+++...+..+.+.+
T Consensus        65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~  103 (279)
T PRK07417         65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEK  103 (279)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHH
Confidence            7766665555544332  223454444455555554443

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.30  E-value=0.002  Score=57.55  Aligned_cols=114  Identities=10%  Similarity=0.055  Sum_probs=63.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~-~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +|+++| +|.||+.+++.+. ..++++. ++|++.  ....++... ....++..+++++++.+.+   ..+|+|+-..+
T Consensus         1 ~IG~IG-LG~MG~~mA~nL~-~~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIG-LAVMGSNLALNMA-DHGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK   72 (467)
T ss_pred             CEEEEe-eHHHHHHHHHHHH-hcCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence            489999 7999999999997 5578755 677643  122222210 0001245567887766421   36888775554


Q ss_pred             c-hhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          116 A-STVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       116 p-~~~~~~~---~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      | ..+.+.+   ...++.|.-+|-++|....+..+...+ .++.++-|
T Consensus        73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~f  119 (467)
T TIGR00873        73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGILF  119 (467)
T ss_pred             CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCEE
Confidence            4 2333333   334455655655555444444444443 44444443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.27  E-value=0.00092  Score=49.76  Aligned_cols=110  Identities=17%  Similarity=0.031  Sum_probs=59.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ..||+|+|+ |.||+.+++.+.... ..-+.+++++.. .....+..+.  ..-...+.+.++++.      ++|+||..
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~Dvvi~~   88 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--LGIAIAYLDLEELLA------EADLIINT   88 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--cccceeecchhhccc------cCCEEEeC
Confidence            468999995 999999999998654 445556775421 1111111111  000112456666653      79999977


Q ss_pred             cCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          114 TDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       114 T~p~~~----~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +++..+    .......++.+.-++--.+ ...+.  .|.+.+++.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~~-~~~~~--~l~~~~~~~g~  133 (155)
T cd01065          89 TPVGMKPGDELPLPPSLLKPGGVVYDVVY-NPLET--PLLKEARALGA  133 (155)
T ss_pred             cCCCCCCCCCCCCCHHHcCCCCEEEEcCc-CCCCC--HHHHHHHHCCC
Confidence            766553    1122344566665442222 11111  56666666554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00086  Score=55.76  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVV  110 (161)
                      .+++||+++||.|+.|+.+++.++.+|-+|+.=+.++...|.....+...  +....-+  .|...+-+    ....|.+
T Consensus        17 ~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk~--eiqy~~lst~D~~klee----~~avd~w   90 (340)
T KOG4354|consen   17 EKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTKL--EIQYADLSTVDAVKLEE----PHAVDHW   90 (340)
T ss_pred             CCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcchh--heeecccchhhHHHhhc----CCceeee
Confidence            35699999999999999999999999999999888887778766544321  1111111  22222222    2345566


Q ss_pred             EEccCchhHHH-HHH-HHHHcCCcEEEe
Q 031341          111 IDFTDASTVYD-NVK-QATAFGMRSVVY  136 (161)
Q Consensus       111 IDfT~p~~~~~-~~~-~al~~g~~vVig  136 (161)
                      + +..|..+.+ .+. .-..+|+..++-
T Consensus        91 v-maLPn~vckpfv~~~~s~~gks~iid  117 (340)
T KOG4354|consen   91 V-MALPNQVCKPFVSLTESSDGKSRIID  117 (340)
T ss_pred             e-eecchhhHHHHHHHHhhcCCceeeee
Confidence            6 788887753 332 223455655543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.25  E-value=0.0043  Score=54.12  Aligned_cols=68  Identities=16%  Similarity=0.262  Sum_probs=43.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cC--------C------CCCC-eeeeCCHHHHHh
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E------QPLE-IPVMSDLTMVLG   99 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~-g~--------~------~~~~-i~v~~dl~~~l~   99 (161)
                      |||+|+| +|+||..++..+. ..|+++.+ +|++..  .+..+. |.        .      ...+ +..++++++++.
T Consensus         1 mkI~vIG-lG~~G~~lA~~La-~~G~~V~~-~d~~~~--~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         1 MKIAVIG-LGYVGLPLAALLA-DLGHEVTG-VDIDQE--KVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             CEEEEEC-CCchhHHHHHHHH-hcCCeEEE-EECCHH--HHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence            5899999 6999999999987 56888664 564311  111110 00        0      0013 566778888774


Q ss_pred             cccccCCccEEEEcc
Q 031341          100 SISQSKARAVVIDFT  114 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (161)
                            ++|++|.+.
T Consensus        76 ------~advvii~v   84 (411)
T TIGR03026        76 ------DADVIIICV   84 (411)
T ss_pred             ------hCCEEEEEe
Confidence                  799988554

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08223 hypothetical protein; Validated

Probab=97.25  E-value=0.0043  Score=52.33  Aligned_cols=95  Identities=19%  Similarity=0.214  Sum_probs=61.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~--   91 (161)
                      .-||.|+|+ |..|..+++.+. ..|+.=..++|.+.                .|++..+.     ..+.....+..+  
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~  104 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE  104 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            368999995 999999999987 66777777888431                12211111     111111122222  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHHHcCCcEEEeC
Q 031341           92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~g~~vVigt  137 (161)
                          ++.++++.      +.|+|||.+..   +.-...-..|.++|+|+|.+.
T Consensus       105 ~l~~~n~~~ll~------~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~  151 (287)
T PRK08223        105 GIGKENADAFLD------GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAA  151 (287)
T ss_pred             ccCccCHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence                34556664      79999999853   344556688999999999873

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.24  E-value=0.0024  Score=49.65  Aligned_cols=93  Identities=18%  Similarity=0.201  Sum_probs=55.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---------------CCcchhhh----h-cCCCCCCeeee-----
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------------VGEDIGMV----C-DMEQPLEIPVM-----   91 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---------------~g~~~~~~----~-g~~~~~~i~v~-----   91 (161)
                      ||+|+|+ |.+|..+++.+. ..++.=+.++|.+.               .|++..+.    + .+....++..+     
T Consensus         1 ~VlViG~-GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID   78 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence            6999995 999999999987 55776566788431               11111110    0 01001122111     


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHc-CCcEEEeC
Q 031341           92 -SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAF-GMRSVVYV  137 (161)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~-g~~vVigt  137 (161)
                       .++++.+.      ++|+|||++.. +.-......+.++ ++|+|.+.
T Consensus        79 ~~~~~~~l~------~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~  121 (174)
T cd01487          79 ENNLEGLFG------DCDIVVEAFDNAETKAMLAESLLGNKNKPVVCAS  121 (174)
T ss_pred             hhhHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence             23344553      79999998744 4334456677777 99999863

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.24  E-value=0.0021  Score=54.82  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=57.3

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-C------CCcchhhhh-cCCCCCCeeeeCCHHHHHhccccc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS  104 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-~------~g~~~~~~~-g~~~~~~i~v~~dl~~~l~~~~~~  104 (161)
                      ..|+||+|+|+ |.||..++..+.+..  .++....++ .      .+.+...+- +..-+.++.+++|+++++.     
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~-----   76 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN-----   76 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh-----
Confidence            34689999995 999999999887553  233222211 0      111111110 1100123556788888774     


Q ss_pred             CCccEEEEccCchhHHHHHHH---HHHcCCcEEEeCCCCCH
Q 031341          105 KARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQL  142 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~---al~~g~~vVigttg~~~  142 (161)
                       .+|+||-++++....+.++.   .+..+.++|+-+-|++.
T Consensus        77 -~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         77 -CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             -cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence             78999956555544444433   34445567666557754

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.24  E-value=0.0026  Score=53.14  Aligned_cols=101  Identities=15%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----hhcCCCC--------CCeeeeCCHHHHHhcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----VCDMEQP--------LEIPVMSDLTMVLGSI  101 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~----~~g~~~~--------~~i~v~~dl~~~l~~~  101 (161)
                      +.||+|+|+ |.||..++..+. ..+++++. +|+.... ....+    ..+...+        ..+..++|+++++.  
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~-~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--   78 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFA-RKGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS--   78 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHH-hCCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc--
Confidence            358999995 999999999987 56788664 5642210 01100    0110000        01345678887764  


Q ss_pred             cccCCccEEEEccCchh--HHHH---HHHHHHcCCcEEEeCCCCCHHH
Q 031341          102 SQSKARAVVIDFTDAST--VYDN---VKQATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus       102 ~~~~~~DVVIDfT~p~~--~~~~---~~~al~~g~~vVigttg~~~e~  144 (161)
                          ++|+||.+..++.  ..+.   +...+..+..+++-|.|++.++
T Consensus        79 ----~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~  122 (311)
T PRK06130         79 ----GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA  122 (311)
T ss_pred             ----cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence                7899997776543  1222   2223333444445556776443

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=97.22  E-value=0.00079  Score=57.11  Aligned_cols=82  Identities=22%  Similarity=0.191  Sum_probs=59.4

Q ss_pred             EecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc------CchhHHHHHHHHHHcCCcEEEeCCCC
Q 031341           67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI  140 (161)
Q Consensus        67 vd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~~~~~al~~g~~vVigttg~  140 (161)
                      +|+...|++++++++.  ..++|++++++++ .     .++|++|.-.      .|+...+.+..|+++|++||.|--- 
T Consensus         1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~-   71 (301)
T PF07755_consen    1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHD-   71 (301)
T ss_dssp             E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred             CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChh-
Confidence            5777889999999986  3899999999999 3     4899888532      4667779999999999999998643 


Q ss_pred             CHHHHHHHHHHhhhcCe
Q 031341          141 QLETVSALSAFCDKASM  157 (161)
Q Consensus       141 ~~e~~~~L~~~A~~~~V  157 (161)
                      -..+..+|.++|++.++
T Consensus        72 ~L~ddpel~~~A~~~g~   88 (301)
T PF07755_consen   72 FLSDDPELAAAAKKNGV   88 (301)
T ss_dssp             -HCCHHHHHCCHHCCT-
T ss_pred             hhccCHHHHHHHHHcCC
Confidence            34566789999998765

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.21  E-value=0.0025  Score=54.25  Aligned_cols=94  Identities=11%  Similarity=0.132  Sum_probs=58.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .||+|+| +|+||+.+++.+. ..+++++...++..  .......    +.|+.++ +.++++.      .+|+|+-..+
T Consensus         4 kkIgiIG-~G~mG~AiA~~L~-~sG~~Viv~~~~~~--~~~~~a~----~~Gv~~~-s~~ea~~------~ADiVvLaVp   68 (314)
T TIGR00465         4 KTVAIIG-YGSQGHAQALNLR-DSGLNVIVGLRKGG--ASWKKAT----EDGFKVG-TVEEAIP------QADLIMNLLP   68 (314)
T ss_pred             CEEEEEe-EcHHHHHHHHHHH-HCCCeEEEEECcCh--hhHHHHH----HCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence            5799999 5999999999997 55677654454321  1111111    2355444 5777764      7999997777


Q ss_pred             chhHHHHH----HHHHHcCCcEEEeCCCCCHHHH
Q 031341          116 ASTVYDNV----KQATAFGMRSVVYVPHIQLETV  145 (161)
Q Consensus       116 p~~~~~~~----~~al~~g~~vVigttg~~~e~~  145 (161)
                      |+...+..    ...++.| .+|+=..|++.+..
T Consensus        69 p~~~~~~v~~ei~~~l~~g-~iVs~aaG~~i~~~  101 (314)
T TIGR00465        69 DEVQHEVYEAEIQPLLKEG-KTLGFSHGFNIHFV  101 (314)
T ss_pred             cHhHHHHHHHHHHhhCCCC-cEEEEeCCccHhhc
Confidence            77343322    2233345 36666678876654

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02858 fructose-bisphosphate aldolase

Probab=97.20  E-value=0.0035  Score=62.61  Aligned_cols=104  Identities=11%  Similarity=0.010  Sum_probs=66.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +.||+++| +|+||..+++.+. ..++++. ++|++.  .....+.    ..+....++++++..      .+|+|+-+-
T Consensus       324 ~~~IGfIG-lG~MG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~V  388 (1378)
T PLN02858        324 VKRIGFIG-LGAMGFGMASHLL-KSNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIMV  388 (1378)
T ss_pred             CCeEEEEC-chHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEec
Confidence            57899999 6999999999997 5678865 667542  2222222    234555678888875      789988433


Q ss_pred             C-chhHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031341          115 D-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (161)
Q Consensus       115 ~-p~~~~~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~  154 (161)
                      . |....+.+      ...+..|.-+|. .+..+++..++|.+.+++
T Consensus       389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~  434 (1378)
T PLN02858        389 ANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN  434 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh
Confidence            3 44333333      122345554444 444678888888777766

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.20  E-value=0.0075  Score=49.65  Aligned_cols=75  Identities=13%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCee-eeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +||+|+| +|.||+.+++.+.+. ++  ++. ++|++..  ......    ..|+. .+.+.+++.       .+|+||.
T Consensus         1 m~I~iIG-~G~mG~sla~~l~~~-g~~~~v~-~~d~~~~--~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vil   64 (275)
T PRK08507          1 MKIGIIG-LGLMGGSLGLALKEK-GLISKVY-GYDHNEL--HLKKAL----ELGLVDEIVSFEELK-------KCDVIFL   64 (275)
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhc-CCCCEEE-EEcCCHH--HHHHHH----HCCCCcccCCHHHHh-------cCCEEEE
Confidence            4899999 699999999998754 43  444 4665321  111111    22321 234666643       4899997


Q ss_pred             ccCchhHHHHHHHH
Q 031341          113 FTDASTVYDNVKQA  126 (161)
Q Consensus       113 fT~p~~~~~~~~~a  126 (161)
                      +++|....+.+...
T Consensus        65 avp~~~~~~~~~~l   78 (275)
T PRK08507         65 AIPVDAIIEILPKL   78 (275)
T ss_pred             eCcHHHHHHHHHHH
Confidence            77777666666544

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.16  E-value=0.0015  Score=54.27  Aligned_cols=79  Identities=22%  Similarity=0.310  Sum_probs=49.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc-
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (161)
                      |||.|+|++|.+|+.+.+.+. ..+.++++. ++..  .|+.            -.+.+.+.+.+    .+||+||.+. 
T Consensus         1 MriLI~GasG~lG~~l~~~l~-~~~~~v~~~-~r~~--~dl~------------d~~~~~~~~~~----~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALK-ERGYEVIAT-SRSD--LDLT------------DPEAVAKLLEA----FKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHT-TTSEEEEEE-STTC--S-TT------------SHHHHHHHHHH----H--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHh-hCCCEEEEe-Cchh--cCCC------------CHHHHHHHHHH----hCCCeEeccce
Confidence            799999999999999999887 478887776 4321  1111            11344555553    4799999875 


Q ss_pred             ---------CchhH--------HHHHHHHHHcCCcEE
Q 031341          115 ---------DASTV--------YDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ---------~p~~~--------~~~~~~al~~g~~vV  134 (161)
                               .|+..        ...++.|.++|.++|
T Consensus        61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li   97 (286)
T PF04321_consen   61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLI   97 (286)
T ss_dssp             ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE
T ss_pred             eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEE
Confidence                     23221        234578888999987

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=97.16  E-value=0.0031  Score=47.30  Aligned_cols=96  Identities=15%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhh-------------------hcCCCCCCeeeeCCH
Q 031341           38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMV-------------------CDMEQPLEIPVMSDL   94 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g---~~~~~~-------------------~g~~~~~~i~v~~dl   94 (161)
                      |.|.|+||.+|+..++.+.++| .++++++..+....   +.+.++                   +.. ...++.++...
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~-~~~~~~v~~G~   79 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPS-KGPGIEVLSGP   79 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHH-TTSSSEEEESH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhh-cCCCCEEEeCh
Confidence            6899999999999999999887 79999999853210   000000                   000 02245555443


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      +.+.+ +....++|+|+-...=.....-...|+++|+.+-.
T Consensus        80 ~~l~~-~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL  119 (129)
T PF02670_consen   80 EGLEE-LAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL  119 (129)
T ss_dssp             HHHHH-HHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred             HHHHH-HhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence            33221 11236899998666666667888889999998876

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.15  E-value=0.0044  Score=50.68  Aligned_cols=95  Identities=20%  Similarity=0.244  Sum_probs=59.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~--   91 (161)
                      .-||.|+|+ |.+|..+++.|. ..|+.=..++|.+.                .|++..+.     ..+.....+..+  
T Consensus        24 ~~~VlvvG~-GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~  101 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA  101 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            369999995 999999999997 55777777888431                11111110     011001122111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt  137 (161)
                          .++++.+.      +.|+|||++. ++.-...-..|.++++|+|.|.
T Consensus       102 ~i~~~~~~~~~~------~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~  146 (240)
T TIGR02355       102 KLDDAELAALIA------EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGA  146 (240)
T ss_pred             cCCHHHHHHHhh------cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                12334453      7999999984 4444456688999999999764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06046 alanine dehydrogenase; Validated

Probab=97.14  E-value=0.00094  Score=56.75  Aligned_cols=91  Identities=14%  Similarity=0.110  Sum_probs=61.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      .-+|+|+| +|.+|+.+++.+...++++.+.++++.... ....+...  +..+  +.+++|+++++      . +|+|+
T Consensus       129 ~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~l------~-aDiVv  198 (326)
T PRK06046        129 SKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS--SVVGCDVTVAEDIEEAC------D-CDILV  198 (326)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH--hhcCceEEEeCCHHHHh------h-CCEEE
Confidence            46899999 599999999999988999999999975311 11111111  1123  45678999887      2 89999


Q ss_pred             EccCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341          112 DFTDASTVYDNV-KQATAFGMRSV-VYV  137 (161)
Q Consensus       112 DfT~p~~~~~~~-~~al~~g~~vV-igt  137 (161)
                      -+|+.. . +.+ ...++.|.||. +|.
T Consensus       199 ~aTps~-~-P~~~~~~l~~g~hV~~iGs  224 (326)
T PRK06046        199 TTTPSR-K-PVVKAEWIKEGTHINAIGA  224 (326)
T ss_pred             EecCCC-C-cEecHHHcCCCCEEEecCC
Confidence            766432 2 222 33468899976 553

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.14  E-value=0.0027  Score=54.22  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+...-++++.+ +|+... ...        +..+....++++++.      .+|+|+-..+
T Consensus       147 ~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~~--------~~~~~~~~~l~ell~------~aDvIvl~lP  209 (332)
T PRK08605        147 LKVAVIG-TGRIGLAVAKIFAKGYGSDVVA-YDPFPN-AKA--------ATYVDYKDTIEEAVE------GADIVTLHMP  209 (332)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCEEEE-ECCCcc-HhH--------HhhccccCCHHHHHH------hCCEEEEeCC
Confidence            6899999 6999999999985455788764 564321 111        112233468999985      7999995543


Q ss_pred             chhHHHHH-----HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          116 ASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       116 p~~~~~~~-----~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      .....+++     ...++.|.-+|-...|.-.++ +.|.++.+...
T Consensus       210 ~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~  254 (332)
T PRK08605        210 ATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDNGL  254 (332)
T ss_pred             CCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCC
Confidence            22222222     344566665554444543333 34444444433

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.14  E-value=0.00073  Score=57.51  Aligned_cols=92  Identities=11%  Similarity=0.021  Sum_probs=62.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .-+++|+| +|.||+.+++.+.....++-+.++|+...  +...+.....+.+  +.+++|.++++.      ++|+|+-
T Consensus       128 ~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~~--~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVit  198 (325)
T TIGR02371       128 SSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTPS--TREKFALRASDYEVPVRAATDPREAVE------GCDILVT  198 (325)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEE
Confidence            36899999 59999999999988888999999997532  1112211001233  556799999885      7999995


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341          113 FTDASTVYDNV-KQATAFGMRSV-VYV  137 (161)
Q Consensus       113 fT~p~~~~~~~-~~al~~g~~vV-igt  137 (161)
                      +| |... +.+ ...++.|.|+. +|.
T Consensus       199 aT-~s~~-P~~~~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       199 TT-PSRK-PVVKADWVSEGTHINAIGA  223 (325)
T ss_pred             ec-CCCC-cEecHHHcCCCCEEEecCC
Confidence            55 3322 222 34568899976 664

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.13  E-value=0.004  Score=53.40  Aligned_cols=94  Identities=18%  Similarity=0.184  Sum_probs=58.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------------Ccchh-----hhhcCCCCCCeeee-
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------------GEDIG-----MVCDMEQPLEIPVM-   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~------------------g~~~~-----~~~g~~~~~~i~v~-   91 (161)
                      -||.|+|+ |..|..+++.|. ..|+.-+.++|++..                  |++..     .+..+.....+..+ 
T Consensus        25 ~~VlIiG~-GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         25 KHVLIVGA-GALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             CcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            58999995 999999999997 667866778886421                  11100     00011001122111 


Q ss_pred             -----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341           92 -----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 -----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt  137 (161)
                           .++++++.      ++|+|||.+..... .-.-..|.++|+|.|.|.
T Consensus       103 ~~~~~~~~~~~~~------~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~  148 (338)
T PRK12475        103 TDVTVEELEELVK------EVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG  148 (338)
T ss_pred             ccCCHHHHHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                 23455553      79999999955444 334478889999999663

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.13  E-value=0.0049  Score=52.91  Aligned_cols=94  Identities=13%  Similarity=0.111  Sum_probs=58.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| +|.||+.+++.+. ..+++++...++.....+...      ..|+... +++++..      .+|+|+...+
T Consensus        18 ktIgIIG-~GsmG~AlA~~L~-~sG~~Vvv~~r~~~~s~~~A~------~~G~~~~-s~~eaa~------~ADVVvLaVP   82 (330)
T PRK05479         18 KKVAIIG-YGSQGHAHALNLR-DSGVDVVVGLREGSKSWKKAE------ADGFEVL-TVAEAAK------WADVIMILLP   82 (330)
T ss_pred             CEEEEEe-eHHHHHHHHHHHH-HCCCEEEEEECCchhhHHHHH------HCCCeeC-CHHHHHh------cCCEEEEcCC
Confidence            6899999 6999999999997 668887755443221111111      2344444 8888875      7999996666


Q ss_pred             chhHHHHH-HHH---HHcCCcEEEeCCCCCHHHH
Q 031341          116 ASTVYDNV-KQA---TAFGMRSVVYVPHIQLETV  145 (161)
Q Consensus       116 p~~~~~~~-~~a---l~~g~~vVigttg~~~e~~  145 (161)
                      |....+.+ ...   ++.|. +|+-..|++....
T Consensus        83 d~~~~~V~~~~I~~~Lk~g~-iL~~a~G~~i~~~  115 (330)
T PRK05479         83 DEVQAEVYEEEIEPNLKEGA-ALAFAHGFNIHFG  115 (330)
T ss_pred             HHHHHHHHHHHHHhcCCCCC-EEEECCCCChhhc
Confidence            65554444 222   33344 4455667765543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.12  E-value=0.006  Score=53.27  Aligned_cols=30  Identities=27%  Similarity=0.449  Sum_probs=23.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |||+|+| +|+||..++..+. . +++++ ++|+
T Consensus         1 mkI~VIG-lGyvGl~~A~~lA-~-G~~Vi-gvD~   30 (388)
T PRK15057          1 MKITISG-TGYVGLSNGLLIA-Q-NHEVV-ALDI   30 (388)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-h-CCcEE-EEEC
Confidence            5899999 6999999996655 4 78855 6674

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.08  E-value=0.013  Score=50.42  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=57.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ||+|+| +|.||..+++.+.+ .+.++. +++++..........    ..++  ...+++++++.      ++|+||.++
T Consensus         2 ~I~iIG-~GliG~siA~~L~~-~G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~------~aDlVilav   68 (359)
T PRK06545          2 TVLIVG-LGLIGGSLALAIKA-AGPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAAA------EADLIVLAV   68 (359)
T ss_pred             eEEEEE-eCHHHHHHHHHHHh-cCCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHhc------CCCEEEEeC
Confidence            699999 69999999999874 455544 344322111111111    1222  12456777764      799999777


Q ss_pred             CchhHHHHHHHHHHc--C-CcEEEeCCCCCHHHHHHHHHH
Q 031341          115 DASTVYDNVKQATAF--G-MRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g-~~vVigttg~~~e~~~~L~~~  151 (161)
                      +|....+.+......  . -.+|+-.++...+..+.+.++
T Consensus        69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~  108 (359)
T PRK06545         69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL  108 (359)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence            776655555544431  1 234443444545555555554

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.05  E-value=0.0031  Score=52.99  Aligned_cols=34  Identities=26%  Similarity=0.174  Sum_probs=29.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |+||.|.|++|.+|+.+++.+.+..+.++.++..
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r   34 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDM   34 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence            5799999999999999999998766789887653

>PLN03139 formate dehydrogenase; Provisional

Probab=97.05  E-value=0.012  Score=51.64  Aligned_cols=106  Identities=16%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++.+ +|+...  +. +..   ...++..++++++++.      ..|+|+...+
T Consensus       200 ktVGIVG-~G~IG~~vA~~L~-afG~~V~~-~d~~~~--~~-~~~---~~~g~~~~~~l~ell~------~sDvV~l~lP  264 (386)
T PLN03139        200 KTVGTVG-AGRIGRLLLQRLK-PFNCNLLY-HDRLKM--DP-ELE---KETGAKFEEDLDAMLP------KCDVVVINTP  264 (386)
T ss_pred             CEEEEEe-ecHHHHHHHHHHH-HCCCEEEE-ECCCCc--ch-hhH---hhcCceecCCHHHHHh------hCCEEEEeCC
Confidence            6899999 6999999999987 56899864 675321  11 111   1335555679999985      6999885543


Q ss_pred             c-hhHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          116 A-STVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       116 p-~~~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      - +...    +.....++.|.-+|--.-|--. +.+.|.++.+...+
T Consensus       265 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~AL~sG~l  310 (386)
T PLN03139        265 LTEKTRGMFNKERIAKMKKGVLIVNNARGAIM-DTQAVADACSSGHI  310 (386)
T ss_pred             CCHHHHHHhCHHHHhhCCCCeEEEECCCCchh-hHHHHHHHHHcCCc
Confidence            1 2222    2223444445443322223222 33456665555444

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.04  E-value=0.0041  Score=53.13  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-++++.+ +|+.... .. .        ......++++++.      .+|+|+...
T Consensus       147 ~~VgIIG-~G~IG~~vA~~L~-~~G~~V~~-~d~~~~~-~~-~--------~~~~~~~l~ell~------~aDiVil~l  206 (330)
T PRK12480        147 MTVAIIG-TGRIGAATAKIYA-GFGATITA-YDAYPNK-DL-D--------FLTYKDSVKEAIK------DADIISLHV  206 (330)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-EeCChhH-hh-h--------hhhccCCHHHHHh------cCCEEEEeC
Confidence            6899999 6999999999887 56898774 5643210 00 0        1123468999986      799998544

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.02  E-value=0.0036  Score=56.13  Aligned_cols=101  Identities=17%  Similarity=0.136  Sum_probs=60.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc-chhhh-----------hcCC-CCCC-eeeeCCHHHHHhcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-DIGMV-----------CDME-QPLE-IPVMSDLTMVLGSI  101 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~-~~~~~-----------~g~~-~~~~-i~v~~dl~~~l~~~  101 (161)
                      +||+|+| +|.||+.++..+. ..|+++. ++|+..... ...+.           .+.. ...+ +.+.+|++++++  
T Consensus         5 ~kIavIG-~G~MG~~iA~~la-~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--   79 (495)
T PRK07531          5 MKAACIG-GGVIGGGWAARFL-LAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--   79 (495)
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-hCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence            5899999 5999999999987 5588765 777542111 11100           0000 0112 567789988875  


Q ss_pred             cccCCccEEEEccCchhH-HH----HHHHHHHcCCcEEEeCCCCCHHHH
Q 031341          102 SQSKARAVVIDFTDASTV-YD----NVKQATAFGMRSVVYVPHIQLETV  145 (161)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~----~~~~al~~g~~vVigttg~~~e~~  145 (161)
                          ++|+|+...+++.. .+    .+...+..+.-+.+-|.+++..++
T Consensus        80 ----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l  124 (495)
T PRK07531         80 ----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDL  124 (495)
T ss_pred             ----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence                79999977655532 22    233334445445555668876543

>PLN02858 fructose-bisphosphate aldolase

Probab=97.02  E-value=0.011  Score=59.17  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=69.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -||+++| .|.||..+++.|. ..++++. ++|++.  .....+.    ..|..+.+++.++..      .+|+|| .+.
T Consensus         5 ~~IGfIG-LG~MG~~mA~~L~-~~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi-~~l   68 (1378)
T PLN02858          5 GVVGFVG-LDSLSFELASSLL-RSGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALV-VVL   68 (1378)
T ss_pred             CeEEEEc-hhHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEE-EEc
Confidence            5799999 7999999999998 5688865 778643  2222332    346677889999875      689888 444


Q ss_pred             ch--hHHHHH---HHHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          116 AS--TVYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       116 p~--~~~~~~---~~al---~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      |+  .+.+.+   ...+   ..|. +++-.+..+++..++|.+..++.+
T Consensus        69 ~~~~~v~~V~~g~~g~~~~l~~g~-iivd~STi~p~~~~~la~~l~~~g  116 (1378)
T PLN02858         69 SHPDQVDDVFFGDEGAAKGLQKGA-VILIRSTILPLQLQKLEKKLTERK  116 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCcC-EEEECCCCCHHHHHHHHHHHHhcC
Confidence            43  333332   1122   3343 555555577888888888877766

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=97.02  E-value=0.016  Score=47.13  Aligned_cols=107  Identities=11%  Similarity=0.167  Sum_probs=73.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ||||+|+. .|.-|.+++.++... =.-+++++.+.+..   .           ....+..++.|..+   .++|++|=+
T Consensus         1 ~mki~vlt-~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~---~-----------~~fie~P~~~Lp~~---~e~Di~va~   62 (224)
T COG1810           1 MMKILVLT-DGEYGKRAVNNLACKGFKNQFVAVKEYPEE---L-----------PDFIEEPEDLLPKL---PEADIVVAY   62 (224)
T ss_pred             CcEEEEEe-eccchHHHHHhHhhhccccceEEEEecccc---c-----------cchhhCHHHhcCCC---CCCCEEEEe
Confidence            79999999 799999999999843 12456766664210   0           11224566666531   478988877


Q ss_pred             c-CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T-~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      + +|+......+.+.+.|+..|+--.+-+.--.++|++.+++.++.+
T Consensus        63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~  109 (224)
T COG1810          63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEF  109 (224)
T ss_pred             ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceee
Confidence            6 899999999988888866655332223345667888888777665

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.00  E-value=0.011  Score=50.66  Aligned_cols=129  Identities=15%  Similarity=0.130  Sum_probs=70.6

Q ss_pred             cccccccccccceeEEee---CCCCCC--CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC
Q 031341           11 RMHHISQNVKAKRFISCS---TNPPQS--NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP   85 (161)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~---~~~~~~--~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~   85 (161)
                      |++-..|.++.-.|-...   .....+  -.++||+| +|++|+++++.+. -=+|++. .+++... ....+      .
T Consensus       117 ~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG-~GrIG~avA~r~~-~Fgm~v~-y~~~~~~-~~~~~------~  186 (324)
T COG1052         117 RIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG-LGRIGQAVARRLK-GFGMKVL-YYDRSPN-PEAEK------E  186 (324)
T ss_pred             chHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC-CCHHHHHHHHHHh-cCCCEEE-EECCCCC-hHHHh------h
Confidence            344455666666655442   112111  26899999 7999999999887 6678866 4443321 11111      1


Q ss_pred             CCeeeeCCHHHHHhcccccCCccEEEEccCchhHHH---HHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCe
Q 031341           86 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYD---NVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASM  157 (161)
Q Consensus        86 ~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~---~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~V  157 (161)
                      .+.. |-+++++++      ..|+++...+......   +.+.....+..+++-.|  |--.+ .+.|.++-++-.+
T Consensus       187 ~~~~-y~~l~ell~------~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD-e~ALi~AL~~g~i  255 (324)
T COG1052         187 LGAR-YVDLDELLA------ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD-EQALIDALKSGKI  255 (324)
T ss_pred             cCce-eccHHHHHH------hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccC-HHHHHHHHHhCCc
Confidence            2233 345999996      7999986664332222   22344455554554444  32222 2345555554443

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=96.99  E-value=0.0048  Score=55.24  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEe
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID   68 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~----~~~eLvavvd   68 (161)
                      ..+.||+|.| .||+||.++|.+.+.    ++++|+|+.+
T Consensus       125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~  163 (477)
T PRK08289        125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVV  163 (477)
T ss_pred             CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence            3468999999 699999999998866    6899999975

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.98  E-value=0.0056  Score=53.27  Aligned_cols=87  Identities=13%  Similarity=0.022  Sum_probs=55.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHH--HHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~e---Lvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~--~l~~~~~~~~~DVV  110 (161)
                      +||+|+|+||-.|+.+++.+.+++++.   +..+.+....|+.. .+.+    ....+ .++++  .+      .+.|++
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v-~~~~~~~~~------~~vDiv   68 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTL-QDAFDIDAL------KALDII   68 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceE-EcCcccccc------cCCCEE
Confidence            489999999999999999998777776   34444433333321 1111    12222 23322  34      379999


Q ss_pred             EEccCchhH-HHHHHHHHHcCCc-EEE
Q 031341          111 IDFTDASTV-YDNVKQATAFGMR-SVV  135 (161)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~g~~-vVi  135 (161)
                      + |+.+... .+....+.++|.+ +|+
T Consensus        69 f-fa~g~~~s~~~~p~~~~aG~~~~VI   94 (366)
T TIGR01745        69 I-TCQGGDYTNEIYPKLRESGWQGYWI   94 (366)
T ss_pred             E-EcCCHHHHHHHHHHHHhCCCCeEEE
Confidence            9 7655554 6788899999965 443

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.98  E-value=0.0018  Score=51.44  Aligned_cols=107  Identities=13%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             eeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchhh-----
Q 031341           23 RFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIGM-----   78 (161)
Q Consensus        23 ~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~~-----   78 (161)
                      |-|..|....|.+   -||.|+|+ |..|.++++.|. ..|+.=..++|.+..                |++-.+     
T Consensus         6 Rqi~l~G~e~Q~~L~~s~VlIiG~-gglG~evak~La-~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~   83 (197)
T cd01492           6 RQIRLWGLEAQKRLRSARILLIGL-KGLGAEIAKNLV-LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLER   83 (197)
T ss_pred             HHHHHhCHHHHHHHHhCcEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHH
Confidence            4455566667754   69999995 999999999997 778887888885321                111000     


Q ss_pred             hhcCCCCCCeee-----eCCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341           79 VCDMEQPLEIPV-----MSDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        79 ~~g~~~~~~i~v-----~~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt  137 (161)
                      +..+.....+..     ..+.++.+.      ++|+||+.+.+... ...-+.|.++++|+|.+.
T Consensus        84 L~~lNp~v~i~~~~~~~~~~~~~~~~------~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~  142 (197)
T cd01492          84 LRALNPRVKVSVDTDDISEKPEEFFS------QFDVVVATELSRAELVKINELCRKLGVKFYATG  142 (197)
T ss_pred             HHHHCCCCEEEEEecCccccHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            011110111211     112234443      68999987754433 455578888999988654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.97  E-value=0.003  Score=49.33  Aligned_cols=99  Identities=16%  Similarity=0.230  Sum_probs=52.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchhh----hh--cCC-------CCCCeeeeCCHHHHH
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIGM----VC--DME-------QPLEIPVMSDLTMVL   98 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-----~~~~~----~~--g~~-------~~~~i~v~~dl~~~l   98 (161)
                      ||+|+|+ |.||+.++..+.. .|+++. ++|.+...     ..+..    +.  |..       ....+.+++|++++.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~-~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~   77 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFAR-AGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV   77 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHH-TTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred             CEEEEcC-CHHHHHHHHHHHh-CCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence            7999995 9999999998874 489865 67743110     00111    00  000       012356678888764


Q ss_pred             hcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHHH
Q 031341           99 GSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETV  145 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~g~~vVigttg~~~e~~  145 (161)
                             ++|+||++.+-+.     .+..+...+.....+.+-|.+++..++
T Consensus        78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l  122 (180)
T PF02737_consen   78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL  122 (180)
T ss_dssp             -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred             -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence                   6899998874332     233333333444454454556765553

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.97  E-value=0.0087  Score=44.42  Aligned_cols=31  Identities=19%  Similarity=0.368  Sum_probs=25.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ||.|+|+ |.+|..+++.|. ..++.=..++|.
T Consensus         1 ~VliiG~-GglGs~ia~~L~-~~Gv~~i~ivD~   31 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLA-RSGVGKITLIDF   31 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HCCCCEEEEEcC
Confidence            6899995 999999999997 667765667874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.97  E-value=0.0087  Score=49.98  Aligned_cols=101  Identities=12%  Similarity=0.176  Sum_probs=58.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc-c--------hhhhhcCC---------CCCCeeeeCCHHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-D--------IGMVCDME---------QPLEIPVMSDLTMV   97 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~-~--------~~~~~g~~---------~~~~i~v~~dl~~~   97 (161)
                      -||+|+|+ |.||+.++..+. ..|++++ ++|++.... .        ...+....         ....+.+++|+++ 
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-   81 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCA-RAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-   81 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence            48999995 999999999887 5689855 677432110 0        00011000         0012346788854 


Q ss_pred             HhcccccCCccEEEEccCchh-----HHHHHHHHH-HcCCcEEEeCCCCCHHHHH
Q 031341           98 LGSISQSKARAVVIDFTDAST-----VYDNVKQAT-AFGMRSVVYVPHIQLETVS  146 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al-~~g~~vVigttg~~~e~~~  146 (161)
                      ++      ++|+||+.-.-+.     .+..+.... ..+..+++-|+++...++.
T Consensus        82 ~~------~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la  130 (286)
T PRK07819         82 FA------DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA  130 (286)
T ss_pred             hC------CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence            43      7899997753322     223334444 5566666666677665544

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.96  E-value=0.0048  Score=51.19  Aligned_cols=101  Identities=14%  Similarity=0.196  Sum_probs=55.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--------hh---cCCC-------CCCeeeeCCHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--------VC---DMEQ-------PLEIPVMSDLTM   96 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~--------~~---g~~~-------~~~i~v~~dl~~   96 (161)
                      .||+|+|+ |.||+.++..+. ..+.++. ++|++... ....+        +.   ....       ...+.+++|+++
T Consensus         4 ~kIaViGa-G~mG~~iA~~la-~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~   80 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTA-FHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE   80 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHH-hcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence            58999995 999999999886 4577744 56643110 00000        00   0000       124557789988


Q ss_pred             HHhcccccCCccEEEEccCchh-H----HHHHHHHHHcCCcEEEeCCCCCHHHH
Q 031341           97 VLGSISQSKARAVVIDFTDAST-V----YDNVKQATAFGMRSVVYVPHIQLETV  145 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~-~----~~~~~~al~~g~~vVigttg~~~e~~  145 (161)
                      ++.      ++|+||.+.+.+. .    .+.+...+..+..+++-|+.++..++
T Consensus        81 a~~------~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~  128 (287)
T PRK08293         81 AVK------DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQF  128 (287)
T ss_pred             Hhc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHH
Confidence            874      7999996653221 2    22233333444434344556655443

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.96  E-value=0.0041  Score=49.89  Aligned_cols=95  Identities=20%  Similarity=0.222  Sum_probs=57.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---------------CCcchhhhh-----cCCCCCCeeee---
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------------VGEDIGMVC-----DMEQPLEIPVM---   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---------------~g~~~~~~~-----g~~~~~~i~v~---   91 (161)
                      ..||+|+|+ |.+|..+++.+. ..|+.=..++|.+.               .|+...+.+     .+.....+..+   
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~  105 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK  105 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence            368999995 999999999997 45776666788431               111101000     00001122111   


Q ss_pred             ---CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHc-CCcEEEeC
Q 031341           92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAF-GMRSVVYV  137 (161)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~-g~~vVigt  137 (161)
                         .++++.+.      ++|+|||++. ++.-......+.++ ++|+|.++
T Consensus       106 i~~~~~~~~~~------~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~  150 (212)
T PRK08644        106 IDEDNIEELFK------DCDIVVEAFDNAETKAMLVETVLEHPGKKLVAAS  150 (212)
T ss_pred             cCHHHHHHHHc------CCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence               12334453      7999999974 44445566788888 99999763

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.95  E-value=0.01  Score=49.17  Aligned_cols=106  Identities=13%  Similarity=0.096  Sum_probs=69.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCCCC-----------C-CeeeeCCH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQP-----------L-EIPVMSDL   94 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-----~~~g~~~~~~---~g~~~~-----------~-~i~v~~dl   94 (161)
                      -.||+|.| +|++|+..++.+. ..+..++++.|+     ...|-|..++   ......           + +.. +-+.
T Consensus        38 g~~vaIqG-fGnVG~~~a~~L~-e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~  114 (254)
T cd05313          38 GKRVAISG-SGNVAQYAAEKLL-ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEG  114 (254)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCC
Confidence            37999999 6999999999886 568999999994     2345554333   100000           0 122 2255


Q ss_pred             HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSAL  148 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L  148 (161)
                      ++++.     .++||++=+..-... .+++....+++..+|+|-.  .++++..+.|
T Consensus       115 ~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L  166 (254)
T cd05313         115 KKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVF  166 (254)
T ss_pred             cchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHH
Confidence            66665     589999966654444 5777777778999999865  3555544444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PLN02427 UDP-apiose/xylose synthase

Probab=96.95  E-value=0.0055  Score=52.38  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=31.4

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+..++||.|.|++|.+|+.+++.|.+..+.+++++..
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r   47 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV   47 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence            34456899999999999999999998766688887643

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.95  E-value=0.0049  Score=50.24  Aligned_cols=97  Identities=24%  Similarity=0.289  Sum_probs=63.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEE--ecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI--DSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV  109 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavv--d~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DV  109 (161)
                      ++.||+|+| +|++|..+.-.++++ .-+|.-..+  |+...|-.-.      .++|++-+ ..++-++.. -.-.++|.
T Consensus         3 sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdglara------arlgv~tt~egv~~ll~~-p~~~di~l   74 (310)
T COG4569           3 SKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARA------ARLGVATTHEGVIGLLNM-PEFADIDL   74 (310)
T ss_pred             CcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHH------HhcCCcchhhHHHHHHhC-CCCCCcce
Confidence            568999999 899999887666666 445554444  4433332111      13455443 334445432 01134559


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      |+|.|+...+.+++.++.+.|++.+==|+
T Consensus        75 vfdatsa~~h~~~a~~~ae~gi~~idltp  103 (310)
T COG4569          75 VFDATSAGAHVKNAAALAEAGIRLIDLTP  103 (310)
T ss_pred             EEeccccchhhcchHhHHhcCCceeecch
Confidence            99999999999999999999999884443

>PRK07574 formate dehydrogenase; Provisional

Probab=96.94  E-value=0.011  Score=51.76  Aligned_cols=106  Identities=16%  Similarity=0.127  Sum_probs=62.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| +|+||+.+++.+. .-++++. ++|+.....+..      ...++..+.++++++.      .+|+|+...+
T Consensus       193 ktVGIvG-~G~IG~~vA~~l~-~fG~~V~-~~dr~~~~~~~~------~~~g~~~~~~l~ell~------~aDvV~l~lP  257 (385)
T PRK07574        193 MTVGIVG-AGRIGLAVLRRLK-PFDVKLH-YTDRHRLPEEVE------QELGLTYHVSFDSLVS------VCDVVTIHCP  257 (385)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCEEE-EECCCCCchhhH------hhcCceecCCHHHHhh------cCCEEEEcCC
Confidence            6899999 6999999999887 5688876 456532111111      1234555679999986      7999985543


Q ss_pred             chhHH-----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          116 ASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       116 p~~~~-----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      -....     +.....++.|.-+|--..|--. +.+.|.++.+...+
T Consensus       258 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~AL~sG~i  303 (385)
T PRK07574        258 LHPETEHLFDADVLSRMKRGSYLVNTARGKIV-DRDAVVRALESGHL  303 (385)
T ss_pred             CCHHHHHHhCHHHHhcCCCCcEEEECCCCchh-hHHHHHHHHHhCCc
Confidence            11111     2334455666544432223222 33456666555444

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.92  E-value=0.0078  Score=49.04  Aligned_cols=94  Identities=11%  Similarity=0.044  Sum_probs=51.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCC-ccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKA-RAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~-~DVVIDfT  114 (161)
                      +|.|.|++|.+|+.+++.|.+ .+.++.++..+.....    ..+.. -..++.=.+++.+++.....-.. +|.++..+
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~   75 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVA   75 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeC
Confidence            589999999999999999874 5889887776432110    01110 01111111233444410000014 78887555


Q ss_pred             Cc-----hhHHHHHHHHHHcCCcEEE
Q 031341          115 DA-----STVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       115 ~p-----~~~~~~~~~al~~g~~vVi  135 (161)
                      .+     ......+..|.++|+.-|+
T Consensus        76 ~~~~~~~~~~~~~i~aa~~~gv~~~V  101 (285)
T TIGR03649        76 PPIPDLAPPMIKFIDFARSKGVRRFV  101 (285)
T ss_pred             CCCCChhHHHHHHHHHHHHcCCCEEE
Confidence            32     1234566788889975443

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=96.92  E-value=0.01  Score=51.93  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=63.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh-------------hcCCC-----CCCeeeeC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV-------------CDMEQ-----PLEIPVMS   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g---~~~~~~-------------~g~~~-----~~~i~v~~   92 (161)
                      |-||+|.|+||.+|+..++.+.++++ ++++++..+....   +.+.++             ..+..     ..++.++.
T Consensus         1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~   80 (389)
T TIGR00243         1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV   80 (389)
T ss_pred             CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence            35899999999999999999887754 9999998843210   000000             00000     00234443


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ..+.+.+ ++...++|+|+-...=-....-...|+++|+.+-..+
T Consensus        81 G~~~l~~-l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN  124 (389)
T TIGR00243        81 GEEGICE-MAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALAN  124 (389)
T ss_pred             CHHHHHH-HHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence            3333221 1223568999966666666777888999999988754

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.92  E-value=0.0062  Score=53.96  Aligned_cols=102  Identities=12%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      --+|+|+| +|.+|+.+++.+. .-+++ |-++|++.. + ..+..    ..|..+ .++++++.      .+|++|++|
T Consensus       212 Gk~VlViG-~G~IG~~vA~~lr-~~Ga~-ViV~d~dp~-r-a~~A~----~~G~~v-~~l~eal~------~aDVVI~aT  275 (425)
T PRK05476        212 GKVVVVAG-YGDVGKGCAQRLR-GLGAR-VIVTEVDPI-C-ALQAA----MDGFRV-MTMEEAAE------LGDIFVTAT  275 (425)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCE-EEEEcCCch-h-hHHHH----hcCCEe-cCHHHHHh------CCCEEEECC
Confidence            35899999 5999999999887 45777 445664321 1 11110    123333 36788774      799999988


Q ss_pred             CchhHH-HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031341          115 DASTVY-DNVKQATAFGMRSVVYVPHIQLETVSALSAFC  152 (161)
Q Consensus       115 ~p~~~~-~~~~~al~~g~~vVigttg~~~e~~~~L~~~A  152 (161)
                      -..... ......++.|.-++...-.-.+-+.+.|.+.+
T Consensus       276 G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~  314 (425)
T PRK05476        276 GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELA  314 (425)
T ss_pred             CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcC
Confidence            543333 34555666776555433212223345566654

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.90  E-value=0.0051  Score=52.81  Aligned_cols=94  Identities=18%  Similarity=0.265  Sum_probs=57.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------------Ccchhh-----hhcCCCCCCeeee-
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------------GEDIGM-----VCDMEQPLEIPVM-   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~------------------g~~~~~-----~~g~~~~~~i~v~-   91 (161)
                      -||.|+|+ |.+|+.+++.|. ..|+.=+.++|.+..                  |.+..+     +..+.....+..+ 
T Consensus        25 ~~VlVvG~-GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         25 KHVLIIGA-GALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             CcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            68999996 999999999997 557866778885310                  101000     0001001112111 


Q ss_pred             -----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341           92 -----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 -----~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt  137 (161)
                           .++++++.      +.|+|||++. ++.-...-..|.++++|+|.+.
T Consensus       103 ~~~~~~~~~~~~~------~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~  148 (339)
T PRK07688        103 QDVTAEELEELVT------GVDLIIDATDNFETRFIVNDAAQKYGIPWIYGA  148 (339)
T ss_pred             ccCCHHHHHHHHc------CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence                 12344553      7899999984 4444555588999999999754

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.88  E-value=0.0052  Score=51.84  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ..||+|+|+ |.||+.+++.+.. .+..-+.+++++..  +..+++.   +++.  ..++++.+.+.      .+|+||.
T Consensus       178 ~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~~--ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVi~  244 (311)
T cd05213         178 GKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTYE--RAEELAK---ELGGNAVPLDELLELLN------EADVVIS  244 (311)
T ss_pred             CCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCHH--HHHHHHH---HcCCeEEeHHHHHHHHh------cCCEEEE
Confidence            478999995 9999999999875 55555667776431  1222221   2222  22345666664      6899998


Q ss_pred             ccCchhHHHHHHHHH
Q 031341          113 FTDASTVYDNVKQAT  127 (161)
Q Consensus       113 fT~p~~~~~~~~~al  127 (161)
                      +|......+.....+
T Consensus       245 at~~~~~~~~~~~~~  259 (311)
T cd05213         245 ATGAPHYAKIVERAM  259 (311)
T ss_pred             CCCCCchHHHHHHHH
Confidence            875444334344333

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.88  E-value=0.012  Score=46.67  Aligned_cols=102  Identities=20%  Similarity=0.308  Sum_probs=59.8

Q ss_pred             eCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchh-----hhhcCC
Q 031341           28 STNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIG-----MVCDME   83 (161)
Q Consensus        28 ~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~-----~~~g~~   83 (161)
                      |....|.+   -||.|+|+ |.+|..+++.+. ..|+.=+-++|.+..                |++..     .+..+.
T Consensus        11 ~g~~~q~kl~~~~VlviG~-GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n   88 (202)
T TIGR02356        11 IGEEGQQRLLNSHVLIIGA-GGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN   88 (202)
T ss_pred             cCHHHHHHhcCCCEEEECC-CHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence            55455543   58999995 999999999997 556654557774310                11100     011110


Q ss_pred             CCCCeeee------CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341           84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ....+..+      .++++.+.      +.|+|||++. ++.-....+.|.++++|+|.+.
T Consensus        89 p~v~i~~~~~~i~~~~~~~~~~------~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~  143 (202)
T TIGR02356        89 SDIQVTALKERVTAENLELLIN------NVDLVLDCTDNFATRYLINDACVALGTPLISAA  143 (202)
T ss_pred             CCCEEEEehhcCCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            01111111      12334453      7899999884 4444456678899999998653

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.87  E-value=0.002  Score=47.87  Aligned_cols=72  Identities=21%  Similarity=0.241  Sum_probs=46.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .-||.|+|+ |+|||.++..+... +++=+-+++|+.. ..++.+..+- ....+.-++++.+.+.      ++|+||.+
T Consensus        12 ~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~-~~~~~~~~~~~~~~~~------~~DivI~a   82 (135)
T PF01488_consen   12 GKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGG-VNIEAIPLEDLEEALQ------EADIVINA   82 (135)
T ss_dssp             TSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTG-CSEEEEEGGGHCHHHH------TESEEEE-
T ss_pred             CCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCc-cccceeeHHHHHHHHh------hCCeEEEe
Confidence            358999995 99999999999855 7776667776531 1223322211 0112333577777775      79999966


Q ss_pred             cC
Q 031341          114 TD  115 (161)
Q Consensus       114 T~  115 (161)
                      |+
T Consensus        83 T~   84 (135)
T PF01488_consen   83 TP   84 (135)
T ss_dssp             SS
T ss_pred             cC
Confidence            63

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.87  E-value=0.008  Score=49.60  Aligned_cols=102  Identities=15%  Similarity=0.183  Sum_probs=57.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhh--cCCC-------CCCeeeeCCHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVC--DMEQ-------PLEIPVMSDLTM   96 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~---------~~~~~--g~~~-------~~~i~v~~dl~~   96 (161)
                      +.||+|+|+ |.||..++..+... +.+++ ++|++....+         ...+.  |...       ..++.+++|+++
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   79 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD   79 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            358999995 99999999998744 77766 4564321000         00111  1000       013455677765


Q ss_pred             HHhcccccCCccEEEEccCchhH-----HHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031341           97 VLGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLETVS  146 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~g~~vVigttg~~~e~~~  146 (161)
                       +.      ++|+||.+.+++..     .+.+...+..+..+++-|.+++.+++.
T Consensus        80 -~~------~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la  127 (282)
T PRK05808         80 -LK------DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELA  127 (282)
T ss_pred             -hc------cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence             43      79999977754333     233334444455554555577665543

>PLN00016 RNA-binding protein; Provisional

Probab=96.85  E-value=0.0073  Score=51.69  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=59.7

Q ss_pred             CCCCCCeeEEEE----cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCCCCCCee-eeCCHHH---
Q 031341           30 NPPQSNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIP-VMSDLTM---   96 (161)
Q Consensus        30 ~~~~~~ikV~Vi----Ga~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~-----~~~~g~~~~~~i~-v~~dl~~---   96 (161)
                      .+...+.||.|+    |++|.+|+.+++.+.+ .+.++.++..+.......     ..+..+. ..++. +..|+.+   
T Consensus        47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~  124 (378)
T PLN00016         47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKS  124 (378)
T ss_pred             hcccccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHh
Confidence            334456899999    9999999999999984 589998887643211100     0000010 12332 3345544   


Q ss_pred             HHhcccccCCccEEEEccCc--hhHHHHHHHHHHcCC-cEE
Q 031341           97 VLGSISQSKARAVVIDFTDA--STVYDNVKQATAFGM-RSV  134 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p--~~~~~~~~~al~~g~-~vV  134 (161)
                      ++.    ..++|+||++...  ......+..+.+.|+ ++|
T Consensus       125 ~~~----~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V  161 (378)
T PLN00016        125 KVA----GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL  161 (378)
T ss_pred             hhc----cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            443    2479999987633  334456677777887 455

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.84  E-value=0.01  Score=52.29  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=60.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .--+|+|+| +|.+|+.+++.+. .-+++++ +++.+.. + ..+..    ..|..+ .++++++.      ..|++|++
T Consensus       194 ~Gk~VvViG-~G~IG~~vA~~ak-~~Ga~Vi-V~d~dp~-r-~~~A~----~~G~~v-~~leeal~------~aDVVIta  257 (406)
T TIGR00936       194 AGKTVVVAG-YGWCGKGIAMRAR-GMGARVI-VTEVDPI-R-ALEAA----MDGFRV-MTMEEAAK------IGDIFITA  257 (406)
T ss_pred             CcCEEEEEC-CCHHHHHHHHHHh-hCcCEEE-EEeCChh-h-HHHHH----hcCCEe-CCHHHHHh------cCCEEEEC
Confidence            335899999 6999999999876 5688854 5664321 1 11111    223333 35677764      78999998


Q ss_pred             cCchhHH-HHHHHHHHcCCcEEEeCCCCCH-HHHHHHHHHhhh
Q 031341          114 TDASTVY-DNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCDK  154 (161)
Q Consensus       114 T~p~~~~-~~~~~al~~g~~vVigttg~~~-e~~~~L~~~A~~  154 (161)
                      |-..... ......++.|.-++...- ++. =+.+.|.+++.+
T Consensus       258 TG~~~vI~~~~~~~mK~GailiN~G~-~~~eId~~aL~~~~~~  299 (406)
T TIGR00936       258 TGNKDVIRGEHFENMKDGAIVANIGH-FDVEIDVKALEELAVE  299 (406)
T ss_pred             CCCHHHHHHHHHhcCCCCcEEEEECC-CCceeCHHHHHHHHhh
Confidence            8544443 335556677665554322 221 234456555544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.84  E-value=0.011  Score=48.34  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~-----~~g~~~~~~i~v~--   91 (161)
                      .-||+|+|+ |..|..+++.|. ..|+.=..++|.+.                .|++..+     +..+.....+..+  
T Consensus        32 ~~~VliiG~-GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~  109 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA  109 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            369999996 999999999997 55776666777421                1111111     1111101122111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt  137 (161)
                          .+.++.+.      ++|+|||++..... ...-..|.++++|+|.+.
T Consensus       110 ~i~~~~~~~~~~------~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~  154 (245)
T PRK05690        110 RLDDDELAALIA------GHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA  154 (245)
T ss_pred             cCCHHHHHHHHh------cCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence                12234443      79999999854444 445578899999999764

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.84  E-value=0.0077  Score=49.50  Aligned_cols=107  Identities=18%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCC-------------CeeeeCCHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-------------EIPVMSDLTM   96 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~-------------~i~v~~dl~~   96 (161)
                      -.||+|-| .|++|+..++.+.+. +..++++.|+.     ..|-+..++..+....             +...+++-++
T Consensus        32 g~~v~IqG-fG~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  109 (244)
T PF00208_consen   32 GKRVAIQG-FGNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE  109 (244)
T ss_dssp             TCEEEEEE-SSHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence            37899999 699999999998754 99999998842     3455544443311011             1222222226


Q ss_pred             HHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341           97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSAL  148 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L  148 (161)
                      ++.     .++|+++=+..+... .+++...++.|.++|++-.  .++++..+.|
T Consensus       110 il~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L  159 (244)
T PF00208_consen  110 ILS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEIL  159 (244)
T ss_dssp             GGT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHH
T ss_pred             ccc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHH
Confidence            665     589999988877666 4677768899999999964  4666655433

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.83  E-value=0.0024  Score=53.90  Aligned_cols=90  Identities=16%  Similarity=0.035  Sum_probs=58.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .+++|+| +|.+|+.+++.+....+.+-+.+++++... ....+...   ..++.+ +++.++++.      ++|+||-+
T Consensus       126 ~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~---~~~~~~~~~~~~~av~------~aDiVita  195 (304)
T PRK07340        126 GDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR---ALGPTAEPLDGEAIPE------AVDLVVTA  195 (304)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH---hcCCeeEECCHHHHhh------cCCEEEEc
Confidence            5899999 599999999999876677778888875311 11111111   112233 578888885      79999966


Q ss_pred             cCchhHHHHHHHHHHcCCcEE-EeC
Q 031341          114 TDASTVYDNVKQATAFGMRSV-VYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vV-igt  137 (161)
                      |+...  +.+...++.|.|+. +|.
T Consensus       196 T~s~~--Pl~~~~~~~g~hi~~iGs  218 (304)
T PRK07340        196 TTSRT--PVYPEAARAGRLVVAVGA  218 (304)
T ss_pred             cCCCC--ceeCccCCCCCEEEecCC
Confidence            64322  22222368888877 553

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.83  E-value=0.022  Score=49.38  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=42.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .+.||+|+|++|.||+.+++.+.. .++++. ++|+..                   .++.++++.      ++|+||.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~-~~d~~~-------------------~~~~~~~~~------~aDlVila  149 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVR-ILEQDD-------------------WDRAEDILA------DAGMVIVS  149 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHH-CCCeEE-EeCCCc-------------------chhHHHHHh------cCCEEEEe
Confidence            457999999679999999999874 567644 445421                   024455553      68888855


Q ss_pred             cCchhHHHHHHHH
Q 031341          114 TDASTVYDNVKQA  126 (161)
Q Consensus       114 T~p~~~~~~~~~a  126 (161)
                      +++....+.+...
T Consensus       150 vP~~~~~~~~~~l  162 (374)
T PRK11199        150 VPIHLTEEVIARL  162 (374)
T ss_pred             CcHHHHHHHHHHH
Confidence            5555445555443

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.82  E-value=0.0085  Score=51.18  Aligned_cols=105  Identities=14%  Similarity=0.054  Sum_probs=61.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|+| +|+||+.+++.+. .-|+++. ++|+...  +...     ...++. +.++++++.      ..|+|+...+
T Consensus       151 ktvgIiG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~~--~~~~-----~~~~~~-~~~l~ell~------~aDiV~l~lP  213 (333)
T PRK13243        151 KTIGIIG-FGRIGQAVARRAK-GFGMRIL-YYSRTRK--PEAE-----KELGAE-YRPLEELLR------ESDFVSLHVP  213 (333)
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCC--hhhH-----HHcCCE-ecCHHHHHh------hCCEEEEeCC
Confidence            6999999 6999999999987 5578876 5675421  1111     022333 468999986      6999995553


Q ss_pred             chh-HH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          116 AST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       116 p~~-~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ... ..    +.....++.|.-+|--..|--. +.+.|.++.++..+-
T Consensus       214 ~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~v-d~~aL~~aL~~g~i~  260 (333)
T PRK13243        214 LTKETYHMINEERLKLMKPTAILVNTARGKVV-DTKALVKALKEGWIA  260 (333)
T ss_pred             CChHHhhccCHHHHhcCCCCeEEEECcCchhc-CHHHHHHHHHcCCeE
Confidence            222 11    2233445556544433334322 234565555555443

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.81  E-value=0.01  Score=50.20  Aligned_cols=99  Identities=14%  Similarity=0.087  Sum_probs=57.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|+|+| +|+||+.+++.+. .-|+++.+ +|+...  +          .+. ..+.++++++.      .+|+|+...
T Consensus       123 ktvgIiG-~G~IG~~vA~~l~-afG~~V~~-~~r~~~--~----------~~~~~~~~~l~ell~------~aDiv~~~l  181 (303)
T PRK06436        123 KSLGILG-YGGIGRRVALLAK-AFGMNIYA-YTRSYV--N----------DGISSIYMEPEDIMK------KSDFVLISL  181 (303)
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCCCc--c----------cCcccccCCHHHHHh------hCCEEEECC
Confidence            6899999 7999999999765 55898874 454321  1          111 12568999986      699998444


Q ss_pred             Cchh--HH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          115 DAST--VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       115 ~p~~--~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                       |..  ..    ......++.|.-+|--..|-- -+.+.|.++.++..+
T Consensus       182 -p~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~-vd~~aL~~aL~~g~i  228 (303)
T PRK06436        182 -PLTDETRGMINSKMLSLFRKGLAIINVARADV-VDKNDMLNFLRNHND  228 (303)
T ss_pred             -CCCchhhcCcCHHHHhcCCCCeEEEECCCccc-cCHHHHHHHHHcCCc
Confidence             321  11    222344555544443223322 233445555555433

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.78  E-value=0.033  Score=48.51  Aligned_cols=70  Identities=20%  Similarity=0.097  Sum_probs=49.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..||+|+|.+|.||+.+++.+.+..+.++.+ +|+...                 ...++++.+.      ++|+||-++
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~-----------------~~~~~~~~v~------~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADP-----------------GSLDPATLLQ------RADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCcc-----------------ccCCHHHHhc------CCCEEEEeC
Confidence            4689999955999999999998655788664 664211                 0135566664      789988777


Q ss_pred             CchhHHHHHHHHHH
Q 031341          115 DASTVYDNVKQATA  128 (161)
Q Consensus       115 ~p~~~~~~~~~al~  128 (161)
                      ++....+.+.....
T Consensus        60 Pv~~~~~~l~~l~~   73 (370)
T PRK08818         60 PIRHTAALIEEYVA   73 (370)
T ss_pred             CHHHHHHHHHHHhh
Confidence            77777777776654

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.76  E-value=0.014  Score=47.19  Aligned_cols=86  Identities=15%  Similarity=0.107  Sum_probs=52.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |++++|+| +|+||..+++.+. ..+.|++-..++.... ....+.      .+..+ -.+.+++.+      ..|||+ 
T Consensus         1 m~~~~i~G-tGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~~------l~~~i~~~~~~dA~~------~aDVVv-   65 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAAA------LGPLITGGSNEDAAA------LADVVV-   65 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHHh------hccccccCChHHHHh------cCCEEE-
Confidence            68899999 6999999999987 6678887665543211 111111      12212 245566654      699999 


Q ss_pred             ccCchhHHHHHHHHHH--c-CCcEEE
Q 031341          113 FTDASTVYDNVKQATA--F-GMRSVV  135 (161)
Q Consensus       113 fT~p~~~~~~~~~al~--~-g~~vVi  135 (161)
                      .+.|-....-+...++  . ||-||-
T Consensus        66 LAVP~~a~~~v~~~l~~~~~~KIvID   91 (211)
T COG2085          66 LAVPFEAIPDVLAELRDALGGKIVID   91 (211)
T ss_pred             EeccHHHHHhHHHHHHHHhCCeEEEe
Confidence            7777666544433333  3 565553

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.76  E-value=0.014  Score=50.02  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=65.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCCC-----CCCeeeeCCHHHHHhcccccC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQ-----PLEIPVMSDLTMVLGSISQSK  105 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~---~~~~~g~~~-----~~~i~v~~dl~~~l~~~~~~~  105 (161)
                      ...+|.|.||+|.+|+.+++.|+ ..|.++.|-+++....+.   +.++-+.++     ..++.-+++++++++      
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence            45899999999999999999998 789999999986433222   222222211     123344577888885      


Q ss_pred             CccEEEEccCch-----------------hHHHHHHHHHHcC--CcEEE
Q 031341          106 ARAVVIDFTDAS-----------------TVYDNVKQATAFG--MRSVV  135 (161)
Q Consensus       106 ~~DVVIDfT~p~-----------------~~~~~~~~al~~g--~~vVi  135 (161)
                      ++|.|+-.+.|-                 +....++.|.+.+  +++|.
T Consensus        78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~  126 (327)
T KOG1502|consen   78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY  126 (327)
T ss_pred             CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence            899998766541                 2234567888888  77774

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.76  E-value=0.012  Score=48.73  Aligned_cols=99  Identities=17%  Similarity=0.146  Sum_probs=55.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhh--cCCCC-------CCeeeeCCHHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVC--DMEQP-------LEIPVMSDLTMV   97 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~---------~~~~--g~~~~-------~~i~v~~dl~~~   97 (161)
                      .||+|+|+ |.||..++..+. ..+++++ ++|++....+.         ..+.  |....       ..+...+++++ 
T Consensus         5 ~kI~vIGa-G~mG~~iA~~la-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   80 (292)
T PRK07530          5 KKVGVIGA-GQMGNGIAHVCA-LAGYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-   80 (292)
T ss_pred             CEEEEECC-cHHHHHHHHHHH-HCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence            58999995 999999999987 5678866 56753211100         0000  10000       12445677754 


Q ss_pred             HhcccccCCccEEEEccCch-hH----HHHHHHHHHcCCcEEEeCCCCCHHH
Q 031341           98 LGSISQSKARAVVIDFTDAS-TV----YDNVKQATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~-~~----~~~~~~al~~g~~vVigttg~~~e~  144 (161)
                      +.      ++|+||.+.+.+ ..    ...+...++.+..+++-|.+++..+
T Consensus        81 ~~------~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~  126 (292)
T PRK07530         81 LA------DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITR  126 (292)
T ss_pred             hc------CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence            43      799999655322 11    2333444455555555566776543

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=96.76  E-value=0.0095  Score=48.25  Aligned_cols=59  Identities=20%  Similarity=0.305  Sum_probs=40.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      ||.|+|++|.+|+.+++.+.+ .+.++.++..+.      .         ++.-.+++++++..    .++|+||++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~r~~------~---------d~~~~~~~~~~~~~----~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSP-EGRVVVALTSSQ------L---------DLTDPEALERLLRA----IRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeCCcc------c---------CCCCHHHHHHHHHh----CCCCEEEECCc
Confidence            689999999999999999985 588877654321      1         11112355666652    46799998763

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08328 hypothetical protein; Provisional

Probab=96.74  E-value=0.02  Score=46.46  Aligned_cols=100  Identities=21%  Similarity=0.220  Sum_probs=60.2

Q ss_pred             eCCCCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc-hhhh-----hcC
Q 031341           28 STNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED-IGMV-----CDM   82 (161)
Q Consensus        28 ~~~~~~~---~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~-~~~~-----~g~   82 (161)
                      |....|.   .-||.|+|+ |..|+.+++.+. ..|+.=..++|.+.                .|+. ..+.     ..+
T Consensus        17 ~g~~~q~~L~~~~VlIiG~-GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~   94 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGV-GGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF   94 (231)
T ss_pred             cCHHHHHHHhCCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh
Confidence            4444454   369999995 999999999997 55676666778421                1211 0000     000


Q ss_pred             CCCCCeee--e------CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341           83 EQPLEIPV--M------SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        83 ~~~~~i~v--~------~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt  137 (161)
                        ..++.+  +      .++++.+.      +.|+|||++. ++.-...-..|.++|+|+|.|.
T Consensus        95 --np~v~v~~~~~~~~~~~~~~~l~------~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~  150 (231)
T PRK08328         95 --NSDIKIETFVGRLSEENIDEVLK------GVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGA  150 (231)
T ss_pred             --CCCCEEEEEeccCCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence              012222  1      23344553      7899999884 4433444467899999999764

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.73  E-value=0.026  Score=47.38  Aligned_cols=116  Identities=16%  Similarity=0.233  Sum_probs=73.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC--------cEEEEEEecC--CCCcc-----h-hhhhc-CCCCCCeeeeCCHHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSH--SVGED-----I-GMVCD-MEQPLEIPVMSDLTMV   97 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~--------~eLvavvd~~--~~g~~-----~-~~~~g-~~~~~~i~v~~dl~~~   97 (161)
                      .++|+++|| |.+|+.+++++.....        ++++++.|..  ...+|     + .++.. +..+.+-  .-+++++
T Consensus         3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~--alsLdaL   79 (364)
T KOG0455|consen    3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS--ALSLDAL   79 (364)
T ss_pred             cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC--cccHHHH
Confidence            589999995 9999999999986555        5789998842  11111     1 11111 0001111  1236666


Q ss_pred             HhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCC--HHHHHHHHHHhh
Q 031341           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQ--LETVSALSAFCD  153 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~--~e~~~~L~~~A~  153 (161)
                      ++.+...+.+-+++|.|......+...++++.|+.+..-.- .|+  .+..++|....+
T Consensus        80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~  138 (364)
T KOG0455|consen   80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSK  138 (364)
T ss_pred             HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCC
Confidence            55544456778999999988889999999999999765432 343  344445544433

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.73  E-value=0.0044  Score=51.36  Aligned_cols=102  Identities=12%  Similarity=0.191  Sum_probs=57.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----h--hcCC----C-------CCCeeeeCCHHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----V--CDME----Q-------PLEIPVMSDLTMV   97 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~----~--~g~~----~-------~~~i~v~~dl~~~   97 (161)
                      -||+|+|+ |.||+.++..+. ..++++. ++|++... ....+    .  .+..    .       ...+..+++++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   78 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFA-VSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA   78 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHH-hCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence            37999995 999999999887 5578766 56743210 00000    0  0000    0       0124567888887


Q ss_pred             HhcccccCCccEEEEccCchhH-----HHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031341           98 LGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLETVS  146 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~g~~vVigttg~~~e~~~  146 (161)
                      +.      ++|+||.+.+.+..     ...+...+..+.-+++-|+.++.++..
T Consensus        79 ~~------~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~  126 (288)
T PRK09260         79 VA------DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIA  126 (288)
T ss_pred             hc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence            74      79999965533221     122333344444444556667776543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.72  E-value=0.0065  Score=50.44  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -||+|+|+ |.||+.++..+. ..+++++ ++|++
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la-~~G~~V~-l~d~~   35 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFA-RTGYDVT-IVDVS   35 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHH-hcCCeEE-EEeCC
Confidence            47999995 999999999887 5578755 56743

>PRK07411 hypothetical protein; Validated

Probab=96.72  E-value=0.014  Score=51.06  Aligned_cols=95  Identities=17%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----C-----------Ccchhhh-----hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----V-----------GEDIGMV-----CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~-----------g~~~~~~-----~g~~~~~~i~v~--   91 (161)
                      .-||.|+|+ |..|..+++.|. ..|+.=..++|.+.     .           |+...+.     ..+.....+..+  
T Consensus        38 ~~~VlivG~-GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~  115 (390)
T PRK07411         38 AASVLCIGT-GGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET  115 (390)
T ss_pred             cCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence            369999995 999999999987 77887788888431     1           1111110     011101122212  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt  137 (161)
                          .+..+.+.      +.|+|||++..... .-.-..|.+.++|.|.|.
T Consensus       116 ~~~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~  160 (390)
T PRK07411        116 RLSSENALDILA------PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGS  160 (390)
T ss_pred             ccCHHhHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                12234453      79999999865444 444478899999999764

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.71  E-value=0.033  Score=51.95  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=59.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCee--eeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~--v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      -||+|+| .|.||..+++.+.... ..+ +-++|++..  +.....    +.++.  ..+++++++.      ++|+||.
T Consensus         4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~-V~~~d~~~~--~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVil   69 (735)
T PRK14806          4 GRVVVIG-LGLIGGSFAKALRERGLARE-VVAVDRRAK--SLELAV----SLGVIDRGEEDLAEAVS------GADVIVL   69 (735)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHhcCCCCE-EEEEECChh--HHHHHH----HCCCCCcccCCHHHHhc------CCCEEEE
Confidence            5799999 6999999999987542 235 445675431  111111    22322  3456777764      7899997


Q ss_pred             ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHHh
Q 031341          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC  152 (161)
Q Consensus       113 fT~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~L~~~A  152 (161)
                      +++|+...+.+.....  ....+|+-..+......+.+.+..
T Consensus        70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~  111 (735)
T PRK14806         70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF  111 (735)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence            7766655555443332  223355544445544555565553

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=96.71  E-value=0.011  Score=48.71  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=27.7

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      |.|.|++|.+|+.+++.+.+ .|.++++++|+.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHh-CCCceEEEecCC
Confidence            78999999999999999985 478888888864

>PLN02522 ATP citrate (pro-S)-lyase

Probab=96.70  E-value=0.01  Score=54.85  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             CCCeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHH-HHHHHcCCcEEEe-CCCCCHHHHHHHHHHhhhcCeeecC
Q 031341           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNV-KQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus        85 ~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~-~~al~~g~~vVig-ttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ..++|||++++|+.++   ..++|+.|.|.+|..+.+-+ +.+.+.|++.++- |.|+.+.+..+|.++|++.++-.-|
T Consensus        60 ~~~iPVf~tv~eA~~~---~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIG  135 (608)
T PLN02522         60 EIAIPVHGSIEAACKA---HPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIG  135 (608)
T ss_pred             eeCccccchHHHHHHh---CCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEEC
Confidence            4689999999999874   23789999999988887655 4555569876644 5588877788999999998776544

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.68  E-value=0.014  Score=51.60  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .++|||+|+| +|+||.-++..+..  +++++ ++|.
T Consensus         4 ~~~mkI~vIG-lGyvGlpmA~~la~--~~~V~-g~D~   36 (425)
T PRK15182          4 IDEVKIAIIG-LGYVGLPLAVEFGK--SRQVV-GFDV   36 (425)
T ss_pred             CCCCeEEEEC-cCcchHHHHHHHhc--CCEEE-EEeC
Confidence            3458999999 79999999998764  58866 5774

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.68  E-value=0.018  Score=49.66  Aligned_cols=93  Identities=20%  Similarity=0.250  Sum_probs=57.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----C-----------Ccchhhhh-----cCCCCCCeeee---
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----V-----------GEDIGMVC-----DMEQPLEIPVM---   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~-----------g~~~~~~~-----g~~~~~~i~v~---   91 (161)
                      -||.|+|+ |..|..+++.|. ..|+.=..++|.+.     .           |++..+.+     .+.....+..+   
T Consensus        29 ~~VlivG~-GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~  106 (355)
T PRK05597         29 AKVAVIGA-GGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR  106 (355)
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence            69999995 999999999987 77887788888431     1           11111100     11001122111   


Q ss_pred             ---CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341           92 ---SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (161)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig  136 (161)
                         ++..+.+.      ++|+|||++..... .-.-..|.++++|+|.|
T Consensus       107 i~~~~~~~~~~------~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~  149 (355)
T PRK05597        107 LTWSNALDELR------DADVILDGSDNFDTRHLASWAAARLGIPHVWA  149 (355)
T ss_pred             cCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence               12234553      79999999854333 34457889999999976

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.67  E-value=0.0099  Score=47.21  Aligned_cols=32  Identities=16%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      .+|+|+| .|+||+.+++.+. ..+.+++ ++|++
T Consensus        29 k~v~I~G-~G~vG~~~A~~L~-~~G~~Vv-v~D~~   60 (200)
T cd01075          29 KTVAVQG-LGKVGYKLAEHLL-EEGAKLI-VADIN   60 (200)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEcCC
Confidence            6899999 5999999999987 5689998 77754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.65  E-value=0.022  Score=46.76  Aligned_cols=97  Identities=14%  Similarity=0.122  Sum_probs=52.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC---CCC--CeeeeCCHHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---QPL--EIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~---~~~--~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |||+|+|+ |.||..++..+.+ .+.++..+..+...-..+.+ .|..   .+.  .+..+++.+++ .      .+|+|
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~------~~d~v   70 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNE-NGLRLEDGEITVPVLAADDPAEL-G------PQDLV   70 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHH-cCCcccCCceeecccCCCChhHc-C------CCCEE
Confidence            58999995 9999999999874 46776654432211001100 0110   000  11224555544 3      79999


Q ss_pred             EEccCchhHHHHHH---HHHHcCCcEEEeCCCCCH
Q 031341          111 IDFTDASTVYDNVK---QATAFGMRSVVYVPHIQL  142 (161)
Q Consensus       111 IDfT~p~~~~~~~~---~al~~g~~vVigttg~~~  142 (161)
                      |-++.+....+.+.   ..+..+..+|+-..|+..
T Consensus        71 ila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         71 ILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             EEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            96765554444333   333344567665567753

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.63  E-value=0.0087  Score=50.35  Aligned_cols=78  Identities=23%  Similarity=0.307  Sum_probs=55.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc-
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (161)
                      |||.|.|++|..|+.+.+.+.  ++.++++.....               .++.-.+.+.+++.+    .+||+||.+. 
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA   59 (281)
T COG1091           1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA   59 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence            579999999999999999876  888888765532               122223456777764    6899999754 


Q ss_pred             ---------Cch--------hHHHHHHHHHHcCCcEE
Q 031341          115 ---------DAS--------TVYDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ---------~p~--------~~~~~~~~al~~g~~vV  134 (161)
                               .|+        +....++.|-+.|.++|
T Consensus        60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV   96 (281)
T COG1091          60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV   96 (281)
T ss_pred             ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence                     122        22345678888998887

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.61  E-value=0.0047  Score=52.26  Aligned_cols=90  Identities=12%  Similarity=0.125  Sum_probs=55.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|+|+| +|.||+.+++.+....+.+=+-+++++.. .....+.... ....+.+++++++++.      ++|+|+-+|
T Consensus       126 ~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-~g~~~~~~~~~~~av~------~aDIVi~aT  197 (314)
T PRK06141        126 SRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-QGFDAEVVTDLEAAVR------QADIISCAT  197 (314)
T ss_pred             ceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-cCCceEEeCCHHHHHh------cCCEEEEee
Confidence            5899999 59999999997776555666667786431 1122221110 0113566789998885      799998555


Q ss_pred             CchhHHHHH-HHHHHcCCcEEE
Q 031341          115 DASTVYDNV-KQATAFGMRSVV  135 (161)
Q Consensus       115 ~p~~~~~~~-~~al~~g~~vVi  135 (161)
                      +..  .+.+ ...++.|.++.+
T Consensus       198 ~s~--~pvl~~~~l~~g~~i~~  217 (314)
T PRK06141        198 LST--EPLVRGEWLKPGTHLDL  217 (314)
T ss_pred             CCC--CCEecHHHcCCCCEEEe
Confidence            432  2222 245688887653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.60  E-value=0.03  Score=48.34  Aligned_cols=91  Identities=22%  Similarity=0.197  Sum_probs=56.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---CCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~---~dl~~~l~~~~~~~~~DVVID  112 (161)
                      =+|+|+|+ |..|...++.+. .-+.+++++-.+... .....-+|.    +..+.   .+.-+.+.     ..+|++||
T Consensus       168 ~~V~I~G~-GGlGh~avQ~Ak-a~ga~Via~~~~~~K-~e~a~~lGA----d~~i~~~~~~~~~~~~-----~~~d~ii~  235 (339)
T COG1064         168 KWVAVVGA-GGLGHMAVQYAK-AMGAEVIAITRSEEK-LELAKKLGA----DHVINSSDSDALEAVK-----EIADAIID  235 (339)
T ss_pred             CEEEEECC-cHHHHHHHHHHH-HcCCeEEEEeCChHH-HHHHHHhCC----cEEEEcCCchhhHHhH-----hhCcEEEE
Confidence            37999996 999998888765 445998876654321 112222222    22222   12223332     23999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      +..+.+..+.++.....|.-+++|-+
T Consensus       236 tv~~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         236 TVGPATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             CCChhhHHHHHHHHhcCCEEEEECCC
Confidence            99855556666666677777778765

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=96.59  E-value=0.029  Score=42.59  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=69.5

Q ss_pred             eEEEEcCCCH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~---mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|+|+|+|-+   -+-.+.+.|+ ..|+++..|- +...|   .+++      |-++|.|+.++-.      .+|+|.-|
T Consensus        18 ~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPVN-P~~~~---~eiL------G~k~y~sL~dIpe------~IDiVdvF   80 (140)
T COG1832          18 TIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPVN-PKLAG---EEIL------GEKVYPSLADIPE------PIDIVDVF   80 (140)
T ss_pred             eEEEEecCCCCCccHHHHHHHHH-HCCCEEEeeC-cccch---HHhc------CchhhhcHHhCCC------CCcEEEEe
Confidence            6999998764   5556777776 7789988553 22222   3443      5578999999874      89998889


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVS  146 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~  146 (161)
                      -.|+.+.+.++.+++.+..++=.-.|...++..
T Consensus        81 R~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea~  113 (140)
T COG1832          81 RRSEAAPEVAREALEKGAKVVWLQLGIRNEEAA  113 (140)
T ss_pred             cChhhhHHHHHHHHhhCCCeEEEecCcCCHHHH
Confidence            999999999999999999988766676444433

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=96.59  E-value=0.016  Score=51.18  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .+||.|.|++|.+|+.+++.|.+ .+.+++++.
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~ld  151 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIVID  151 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHH-CCCEEEEEe
Confidence            38999999999999999999985 578988654

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=96.57  E-value=0.017  Score=47.84  Aligned_cols=85  Identities=16%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||.|.|++|.+|+.+++.+.+. + ++++ +++... .    +     ..++.-...++++++.    .++|+||.+..
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-~----~-----~~Dl~d~~~~~~~~~~----~~~D~Vih~Aa   63 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-D----Y-----CGDFSNPEGVAETVRK----IRPDVIVNAAA   63 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-c----c-----cCCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence            58999999999999999998754 4 5554 443210 0    0     1122112244555542    36999998752


Q ss_pred             ----------chh--------HHHHHHHHHHcCCcEEEeC
Q 031341          116 ----------AST--------VYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       116 ----------p~~--------~~~~~~~al~~g~~vVigt  137 (161)
                                |..        ....++.|.++|+++|.-.
T Consensus        64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~S  103 (299)
T PRK09987         64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYS  103 (299)
T ss_pred             cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence                      111        1235567778888877433

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.56  E-value=0.0033  Score=54.22  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=30.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +||+|.| .||+||.+.|.+.+.+++|+|++-|
T Consensus         3 ~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd   34 (342)
T PTZ00353          3 ITVGING-FGPVGKAVLFASLTDPLVTVVAVND   34 (342)
T ss_pred             eEEEEEC-CChHHHHHHHHHHhcCCcEEEEecC
Confidence            7999999 6999999999988788999999987

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.56  E-value=0.0052  Score=47.66  Aligned_cols=63  Identities=24%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|++|+.+++.+. .=|+++. ++|+...  +.....    ..++ -+.++++++.      ..|+|+...
T Consensus        37 ~tvgIiG-~G~IG~~vA~~l~-~fG~~V~-~~d~~~~--~~~~~~----~~~~-~~~~l~ell~------~aDiv~~~~   99 (178)
T PF02826_consen   37 KTVGIIG-YGRIGRAVARRLK-AFGMRVI-GYDRSPK--PEEGAD----EFGV-EYVSLDELLA------QADIVSLHL   99 (178)
T ss_dssp             SEEEEES-TSHHHHHHHHHHH-HTT-EEE-EEESSCH--HHHHHH----HTTE-EESSHHHHHH------H-SEEEE-S
T ss_pred             CEEEEEE-EcCCcCeEeeeee-cCCceeE-EecccCC--hhhhcc----cccc-eeeehhhhcc------hhhhhhhhh
Confidence            7999999 6999999999987 6688866 4554321  111011    2233 3569999996      699988544

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.56  E-value=0.018  Score=47.75  Aligned_cols=102  Identities=16%  Similarity=0.164  Sum_probs=55.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhh--cCC------CCCC-eeeeCCHHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVC--DME------QPLE-IPVMSDLTMV   97 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~---------~~~~~--g~~------~~~~-i~v~~dl~~~   97 (161)
                      -||+|+| .|.||+.++..+. ..++++. ++|++....+         ...+.  |..      ...+ +.+.++.+ +
T Consensus         5 ~~V~vIG-~G~mG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~   80 (295)
T PLN02545          5 KKVGVVG-AGQMGSGIAQLAA-AAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE-E   80 (295)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH-H
Confidence            5799999 5999999999987 4578765 6674321100         00111  000      0011 23445654 4


Q ss_pred             HhcccccCCccEEEEccC--chhHHHH---HHHHHHcCCcEEEeCCCCCHHHHHH
Q 031341           98 LGSISQSKARAVVIDFTD--ASTVYDN---VKQATAFGMRSVVYVPHIQLETVSA  147 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~--p~~~~~~---~~~al~~g~~vVigttg~~~e~~~~  147 (161)
                      ++      ++|+||.+..  |+.-...   +...++.+.-+++-|.+++..++.+
T Consensus        81 ~~------~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~  129 (295)
T PLN02545         81 LR------DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS  129 (295)
T ss_pred             hC------CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence            43      7999997664  4332232   3333344443444566787666443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.56  E-value=0.027  Score=48.78  Aligned_cols=93  Identities=22%  Similarity=0.296  Sum_probs=57.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh----h-cCCCCCCeeee---
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV----C-DMEQPLEIPVM---   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~----~-g~~~~~~i~v~---   91 (161)
                      -||.|+|+ |..|+.+++.|. ..|+.=.-++|.+.                .|++..+.    + .+.....+..+   
T Consensus       136 ~~VlvvG~-GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  213 (376)
T PRK08762        136 ARVLLIGA-GGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER  213 (376)
T ss_pred             CcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            68999995 999999999987 66676566778531                12211111    0 01001112111   


Q ss_pred             ---CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEe
Q 031341           92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVig  136 (161)
                         .++++.+.      ++|+|||++. +..-...-..|.++++|+|.+
T Consensus       214 ~~~~~~~~~~~------~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~  256 (376)
T PRK08762        214 VTSDNVEALLQ------DVDVVVDGADNFPTRYLLNDACVKLGKPLVYG  256 (376)
T ss_pred             CChHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence               12334553      7999999985 444445557899999999966

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.56  E-value=0.022  Score=49.72  Aligned_cols=95  Identities=20%  Similarity=0.283  Sum_probs=58.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~--   91 (161)
                      ..||.|+|+ |..|..+++.|. ..|+.=+.++|.+.                .|+...+.     ..+.....+..+  
T Consensus        42 ~~~VlviG~-GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         42 NARVLVIGA-GGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             cCCEEEECC-CHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            369999995 999999999997 66777777888421                12111111     111101122111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt  137 (161)
                          .+.++.+.      ++|+|||++. +..-...-..|.++++|+|.|.
T Consensus       120 ~i~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~  164 (392)
T PRK07878        120 RLDPSNAVELFS------QYDLILDGTDNFATRYLVNDAAVLAGKPYVWGS  164 (392)
T ss_pred             cCChhHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                12234453      7999999984 4444455588999999999764

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.53  E-value=0.0049  Score=52.40  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=59.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      .-+++|+| +|.+|+.+++.+....+++-+.+++++.. .+...+...  ...+  +..++++++++.      ++|+|+
T Consensus       129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~--~~~g~~v~~~~~~~~av~------~aDiVv  199 (326)
T TIGR02992       129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLS--SLLGIDVTAATDPRAAMS------GADIIV  199 (326)
T ss_pred             CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHH--hhcCceEEEeCCHHHHhc------cCCEEE
Confidence            35899999 59999999999986678888889987531 112222111  1123  344788999885      799999


Q ss_pred             EccCchhHHHHH-HHHHHcCCcEE-Ee
Q 031341          112 DFTDASTVYDNV-KQATAFGMRSV-VY  136 (161)
Q Consensus       112 DfT~p~~~~~~~-~~al~~g~~vV-ig  136 (161)
                      -+|+. .. +.+ ...++.|.++. +|
T Consensus       200 taT~s-~~-p~i~~~~l~~g~~i~~vg  224 (326)
T TIGR02992       200 TTTPS-ET-PILHAEWLEPGQHVTAMG  224 (326)
T ss_pred             EecCC-CC-cEecHHHcCCCcEEEeeC
Confidence            66633 22 222 34567888776 44

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.52  E-value=0.025  Score=49.15  Aligned_cols=102  Identities=17%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             eCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----C-----------Ccchhh-----hhcCC
Q 031341           28 STNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----V-----------GEDIGM-----VCDME   83 (161)
Q Consensus        28 ~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~-----------g~~~~~-----~~g~~   83 (161)
                      |....|.+   -||.|+|+ |.+|..+++.+. ..|+.=+.++|.+.     .           |++..+     +..+.
T Consensus        31 ~g~~~q~~l~~~~VliiG~-GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n  108 (370)
T PRK05600         31 FGIEQQERLHNARVLVIGA-GGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ  108 (370)
T ss_pred             hCHHHHHHhcCCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence            44445543   69999995 999999999997 55665566788431     1           111111     00111


Q ss_pred             CCCCeeee------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341           84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt  137 (161)
                      ....+..+      .++++.+.      ++|+|||++..... .-.-..|.++++|+|.+.
T Consensus       109 p~v~i~~~~~~i~~~~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~  163 (370)
T PRK05600        109 PDIRVNALRERLTAENAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGT  163 (370)
T ss_pred             CCCeeEEeeeecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            01122121      23445554      79999999855444 444578999999999664

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.51  E-value=0.015  Score=45.42  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|+| +|..|+.++.+|. +.+++++-........++..+-.      |..+ .+++|+..      ..|+|+-.+ 
T Consensus         5 k~IAViG-yGsQG~a~AlNLr-DSG~~V~Vglr~~s~s~~~A~~~------Gf~v-~~~~eAv~------~aDvV~~L~-   68 (165)
T PF07991_consen    5 KTIAVIG-YGSQGHAHALNLR-DSGVNVIVGLREGSASWEKAKAD------GFEV-MSVAEAVK------KADVVMLLL-   68 (165)
T ss_dssp             SEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTCHHHHHHHHT------T-EC-CEHHHHHH------C-SEEEE-S-
T ss_pred             CEEEEEC-CChHHHHHHHHHH-hCCCCEEEEecCCCcCHHHHHHC------CCee-ccHHHHHh------hCCEEEEeC-
Confidence            5799999 7999999999986 77898876665432123333333      3344 47888875      799988444 


Q ss_pred             chhH-----HHHHHHHHHcCCcEEE
Q 031341          116 ASTV-----YDNVKQATAFGMRSVV  135 (161)
Q Consensus       116 p~~~-----~~~~~~al~~g~~vVi  135 (161)
                      |+..     .+.+.-.++.|.-++.
T Consensus        69 PD~~q~~vy~~~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   69 PDEVQPEVYEEEIAPNLKPGATLVF   93 (165)
T ss_dssp             -HHHHHHHHHHHHHHHS-TT-EEEE
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEe
Confidence            5433     2455566777776654

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.51  E-value=0.011  Score=46.38  Aligned_cols=108  Identities=17%  Similarity=0.230  Sum_probs=60.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhhhhcCC-CCCCeeeeCCHHHHHhcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGMVCDME-QPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------~~g~------~~~~~~g~~-~~~~i~v~~dl~~~l~~~  101 (161)
                      |||+|+| .|++|--++..+. ..|++++| +|.+       ..|.      .+.+++... ......+++|.++++.  
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--   75 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK--   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred             CEEEEEC-CCcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence            7999999 7999999998876 77898775 5521       0111      112221100 0234567788888775  


Q ss_pred             cccCCccEEEEcc-Cch------------hHHHHHHHHHHcCCcEEEeCC---CCCHHHH-HHHHHHh
Q 031341          102 SQSKARAVVIDFT-DAS------------TVYDNVKQATAFGMRSVVYVP---HIQLETV-SALSAFC  152 (161)
Q Consensus       102 ~~~~~~DVVIDfT-~p~------------~~~~~~~~al~~g~~vVigtt---g~~~e~~-~~L~~~A  152 (161)
                          ++|+++.+- +|.            .+.+.+...++.+.-+|+.+|   |.+++.. +.|++..
T Consensus        76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~  139 (185)
T PF03721_consen   76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS  139 (185)
T ss_dssp             ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred             ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence                689888543 231            234455566677788888876   5555443 3344433

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.50  E-value=0.0054  Score=52.16  Aligned_cols=88  Identities=16%  Similarity=0.162  Sum_probs=56.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      -+++|+| +|.+|+.++..+....+++-+.+++++.. .+...+...  +..++  ..++|+++++.      ++|+||-
T Consensus       133 ~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~--~~~g~~v~~~~d~~~al~------~aDiVi~  203 (330)
T PRK08291        133 SRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLR--AELGIPVTVARDVHEAVA------GADIIVT  203 (330)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHh--hccCceEEEeCCHHHHHc------cCCEEEE
Confidence            5899999 59999999999886667888889987531 111211111  12233  44789999885      7899986


Q ss_pred             ccCchhHHHHHH-HHHHcCCcEE
Q 031341          113 FTDASTVYDNVK-QATAFGMRSV  134 (161)
Q Consensus       113 fT~p~~~~~~~~-~al~~g~~vV  134 (161)
                      .|+. .. +.+. ..++.|.|+.
T Consensus       204 aT~s-~~-p~i~~~~l~~g~~v~  224 (330)
T PRK08291        204 TTPS-EE-PILKAEWLHPGLHVT  224 (330)
T ss_pred             eeCC-CC-cEecHHHcCCCceEE
Confidence            6532 22 2222 2367777765

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.48  E-value=0.0085  Score=47.83  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=23.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLv   64 (161)
                      |||+|+|++|+||+.+++.+. ..|+++.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~-~~g~~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILD-DNGLGVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHH-hCCCEEE
Confidence            589999999999999999885 6688753

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=96.47  E-value=0.019  Score=53.02  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +++||.|.|++|.+|+.+++.+.+..+.+++++..
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r  348 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI  348 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence            35899999999999999999998767899998754

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.47  E-value=0.015  Score=42.86  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .||+|+|+ |.+|..+++.|. ..|+.=.-++|.
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~-~~Gv~~i~lvD~   34 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLA-RSGVGKITLVDD   34 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHH-HHTTSEEEEEES
T ss_pred             CEEEEECc-CHHHHHHHHHHH-HhCCCceeecCC
Confidence            68999995 999999999998 557766668885

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=96.44  E-value=0.018  Score=48.56  Aligned_cols=108  Identities=14%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             eeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchh-----h
Q 031341           23 RFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIG-----M   78 (161)
Q Consensus        23 ~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~-----~   78 (161)
                      |-|+-|...++.+   -||.|+|+ |..|.++++.|. ..|+.=+.++|.+..                |++-.     .
T Consensus         4 RQl~~~G~eaq~kL~~s~VLIvG~-gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~   81 (286)
T cd01491           4 RQLYVLGHEAMKKLQKSNVLISGL-GGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQAR   81 (286)
T ss_pred             cceeccCHHHHHHHhcCcEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHH
Confidence            4466666666654   68999995 999999999997 888988889995321                11100     0


Q ss_pred             hhcCCCCCCeeeeC-CH-HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031341           79 VCDMEQPLEIPVMS-DL-TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus        79 ~~g~~~~~~i~v~~-dl-~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt  138 (161)
                      +..+.....+.+++ .+ ++.+.      +.|+||+...+... ...-+.|.++++++|.+-+
T Consensus        82 L~eLNp~V~V~~~~~~~~~~~l~------~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~  138 (286)
T cd01491          82 LAELNPYVPVTVSTGPLTTDELL------KFQVVVLTDASLEDQLKINEFCHSPGIKFISADT  138 (286)
T ss_pred             HHHHCCCCEEEEEeccCCHHHHh------cCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            11111011222222 11 33443      67888876644333 3455778888888876543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.42  E-value=0.019  Score=46.21  Aligned_cols=101  Identities=22%  Similarity=0.287  Sum_probs=58.4

Q ss_pred             eCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhhh-----cCC
Q 031341           28 STNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMVC-----DME   83 (161)
Q Consensus        28 ~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~~-----g~~   83 (161)
                      |....|.+   .||.|+|+ |..|..+++.|. ..|+.-..++|.+.                .|++..+.+     .+.
T Consensus        11 ~g~~~q~~L~~~~VlivG~-GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n   88 (228)
T cd00757          11 IGEEGQEKLKNARVLVVGA-GGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN   88 (228)
T ss_pred             cCHHHHHHHhCCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence            44445543   69999995 999999999997 55777777887431                111100000     000


Q ss_pred             CCCCeeee------CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEe
Q 031341           84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus        84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVig  136 (161)
                      ....+..+      .++++.+.      ++|+||+++. +..-...-+.|.++++|+|.+
T Consensus        89 p~~~i~~~~~~i~~~~~~~~~~------~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~  142 (228)
T cd00757          89 PDVEIEAYNERLDAENAEELIA------GYDLVLDCTDNFATRYLINDACVKLGKPLVSG  142 (228)
T ss_pred             CCCEEEEecceeCHHHHHHHHh------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            00112111      22334443      6888888774 444344557788888888864

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.42  E-value=0.026  Score=47.91  Aligned_cols=62  Identities=13%  Similarity=0.193  Sum_probs=41.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .=|+++.+ +++.....+     +.. .  ..-..++++++.      .+|+|+...
T Consensus       137 ~tvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~~~~~~~~-----~~~-~--~~~~~~l~e~l~------~aDvvv~~l  198 (312)
T PRK15469        137 FTIGILG-AGVLGSKVAQSLQ-TWGFPLRC-WSRSRKSWP-----GVQ-S--FAGREELSAFLS------QTRVLINLL  198 (312)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCCCCCC-----Cce-e--ecccccHHHHHh------cCCEEEECC
Confidence            6899999 7999999999987 56898875 554321100     100 0  111358899986      799999443

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.41  E-value=0.025  Score=48.68  Aligned_cols=65  Identities=15%  Similarity=0.157  Sum_probs=44.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|+| +|.||+.+++.+. .-|+++++..++ ....+...      ..|..+ .++++++.      .+|+|+ ...
T Consensus        17 KtVGIIG-~GsIG~amA~nL~-d~G~~ViV~~r~-~~s~~~A~------~~G~~v-~sl~Eaak------~ADVV~-llL   79 (335)
T PRK13403         17 KTVAVIG-YGSQGHAQAQNLR-DSGVEVVVGVRP-GKSFEVAK------ADGFEV-MSVSEAVR------TAQVVQ-MLL   79 (335)
T ss_pred             CEEEEEe-EcHHHHHHHHHHH-HCcCEEEEEECc-chhhHHHH------HcCCEE-CCHHHHHh------cCCEEE-EeC
Confidence            5799999 7999999999986 678998765443 11111111      224443 48999885      799988 444


Q ss_pred             ch
Q 031341          116 AS  117 (161)
Q Consensus       116 p~  117 (161)
                      |+
T Consensus        80 Pd   81 (335)
T PRK13403         80 PD   81 (335)
T ss_pred             CC
Confidence            43

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.40  E-value=0.03  Score=48.04  Aligned_cols=35  Identities=14%  Similarity=0.127  Sum_probs=29.9

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +..+||.|.|++|.+|+.+++.|.+ .+.++.++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~r   53 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKA-EGHYIIASDW   53 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHh-CCCEEEEEEe
Confidence            3458999999999999999999985 5889887764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.39  E-value=0.047  Score=49.00  Aligned_cols=108  Identities=10%  Similarity=0.059  Sum_probs=62.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCC-------C------CcchhhhhcCCCCCCeeeeCCHHHHHhc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS-------V------GEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~-------~------g~~~~~~~g~~~~~~i~v~~dl~~~l~~  100 (161)
                      ||||+|+| +|++|-.++-.+.+. .+++++++ |...       .      .....+++.........+++++++++. 
T Consensus         1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~-   77 (473)
T PLN02353          1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA-   77 (473)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh-
Confidence            68999999 699999999988765 37888766 5210       0      111222221100112567788887774 


Q ss_pred             ccccCCccEEEEcc-Cchh-----------------HHHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHH
Q 031341          101 ISQSKARAVVIDFT-DAST-----------------VYDNVKQATAFGMRSVVYVP---HIQLETVSALSA  150 (161)
Q Consensus       101 ~~~~~~~DVVIDfT-~p~~-----------------~~~~~~~al~~g~~vVigtt---g~~~e~~~~L~~  150 (161)
                           ++|++|.+- +|..                 +.+.+...++.|.-||+.+|   |.+.+-.+.|.+
T Consensus        78 -----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~  143 (473)
T PLN02353         78 -----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH  143 (473)
T ss_pred             -----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence                 789887543 3431                 11223344456777777776   445444444443

>PLN02206 UDP-glucuronate decarboxylase

Probab=96.37  E-value=0.028  Score=49.78  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=53.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCee-eeCC-HHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIP-VMSD-LTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g--~~~~~~~g~~~~~~i~-v~~d-l~~~l~~~~~~~~~DVVI  111 (161)
                      +||.|.|++|.+|+.+++.|.+ .+.+++++ |+...+  .+......   ..++. +..| .++.+.      ++|+||
T Consensus       120 ~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l-d~~~~~~~~~~~~~~~---~~~~~~i~~D~~~~~l~------~~D~Vi  188 (442)
T PLN02206        120 LRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV-DNFFTGRKENVMHHFS---NPNFELIRHDVVEPILL------EVDQIY  188 (442)
T ss_pred             CEEEEECcccHHHHHHHHHHHH-CcCEEEEE-eCCCccchhhhhhhcc---CCceEEEECCccChhhc------CCCEEE
Confidence            7999999999999999999985 58888865 432111  11111111   11221 1222 333442      689999


Q ss_pred             EccC---ch---------------hHHHHHHHHHHcCCcEEEe
Q 031341          112 DFTD---AS---------------TVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       112 DfT~---p~---------------~~~~~~~~al~~g~~vVig  136 (161)
                      .+..   |.               .....+.+|.++|+++|.-
T Consensus       189 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~  231 (442)
T PLN02206        189 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT  231 (442)
T ss_pred             EeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            8763   11               1134456788889887743

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.37  E-value=0.09  Score=44.76  Aligned_cols=34  Identities=15%  Similarity=0.249  Sum_probs=26.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~   70 (161)
                      ++.||+|+|+ |.||..++..+. ..++ + +.++|..
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la-~~gl~~-i~LvDi~   39 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIV-LKNLGD-VVLFDIV   39 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCCe-EEEEeCC
Confidence            3469999995 999999988776 5564 7 7789953

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.34  E-value=0.04  Score=46.37  Aligned_cols=106  Identities=16%  Similarity=0.201  Sum_probs=56.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--C---------CCCeeeeCCHHHHHhcccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--Q---------PLEIPVMSDLTMVLGSISQ  103 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~--~---------~~~i~v~~dl~~~l~~~~~  103 (161)
                      |+||+|+| .|.||..++..+.+ .+.++.. +++...-..+.+ .|..  .         ...+...++. +.+     
T Consensus         2 ~mkI~IiG-~G~mG~~~A~~L~~-~G~~V~~-~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----   71 (341)
T PRK08229          2 MARICVLG-AGSIGCYLGGRLAA-AGADVTL-IGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AAL-----   71 (341)
T ss_pred             CceEEEEC-CCHHHHHHHHHHHh-cCCcEEE-EecHHHHHHHHh-cCceeecCCCcceecccceeEeccCh-hhc-----
Confidence            58999999 59999999999874 4788765 443211000000 0100  0         0012234455 333     


Q ss_pred             cCCccEEEEccCchhHHHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341          104 SKARAVVIDFTDASTVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~---~al~~g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                       .++|+||.++.+....+.+.   ..+..+..++.-+.|+...  +.|.+...
T Consensus        72 -~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~--~~l~~~~~  121 (341)
T PRK08229         72 -ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA--DVLRAALP  121 (341)
T ss_pred             -cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH--HHHHHhCC
Confidence             37999997765544444333   3334445455555677532  23444433

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.32  E-value=0.03  Score=47.86  Aligned_cols=32  Identities=28%  Similarity=0.293  Sum_probs=26.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .-||+|+|+ |-||+.++..+. ..|+++. ++|+
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a-~aG~~V~-l~D~   38 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARAL-AHGLDVV-AWDP   38 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeC
Confidence            357999995 999999999887 6699876 6775

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.31  E-value=0.032  Score=46.77  Aligned_cols=72  Identities=24%  Similarity=0.215  Sum_probs=44.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchh--------hhh--cCCC-------CCCeeeeCCHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIG--------MVC--DMEQ-------PLEIPVMSDLTM   96 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~--------~~~--g~~~-------~~~i~v~~dl~~   96 (161)
                      ++||+|+| .|.||..++..+.. .|.++. ++|++... ....        .+.  |...       ...+.+..|+++
T Consensus         2 ~~~V~VIG-~G~mG~~iA~~la~-~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~   78 (308)
T PRK06129          2 MGSVAIIG-AGLIGRAWAIVFAR-AGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD   78 (308)
T ss_pred             CcEEEEEC-ccHHHHHHHHHHHH-CCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence            35899999 59999999999874 578765 66753210 0000        011  1000       012456788888


Q ss_pred             HHhcccccCCccEEEEccC
Q 031341           97 VLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~  115 (161)
                      ++.      ++|+|+...+
T Consensus        79 a~~------~ad~Vi~avp   91 (308)
T PRK06129         79 AVA------DADYVQESAP   91 (308)
T ss_pred             hhC------CCCEEEECCc
Confidence            874      7999995553

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.31  E-value=0.048  Score=45.53  Aligned_cols=88  Identities=15%  Similarity=0.193  Sum_probs=55.7

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-E
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-V  109 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-V  109 (161)
                      ++..+-++.|.|||+++|+++++.+. ..++.|+-+..+..   ++.++.           .++++...     ..++ .
T Consensus         2 ~~~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~~---kL~~la-----------~~l~~~~~-----v~v~vi   61 (265)
T COG0300           2 GPMKGKTALITGASSGIGAELAKQLA-RRGYNLILVARRED---KLEALA-----------KELEDKTG-----VEVEVI   61 (265)
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcHH---HHHHHH-----------HHHHHhhC-----ceEEEE
Confidence            34456789999999999999999987 77899886666421   111111           12222211     1234 3


Q ss_pred             EEEccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      -+|.|.|+..........+.  .+.++|=..
T Consensus        62 ~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA   92 (265)
T COG0300          62 PADLSDPEALERLEDELKERGGPIDVLVNNA   92 (265)
T ss_pred             ECcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence            56778887777666665665  577776544

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.30  E-value=0.047  Score=45.00  Aligned_cols=97  Identities=14%  Similarity=0.077  Sum_probs=52.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~------~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      |||+|+|+ |.||..++..+.+ .+.++..+.....      .|.......+- ........++.+++.      ..+|+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~------~~~d~   71 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLE-AGRDVTFLVRPKRAKALRERGLVIRSDHGD-AVVPGPVITDPEELT------GPFDL   71 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-CCCceEEEecHHHHHHHHhCCeEEEeCCCe-EEecceeecCHHHcc------CCCCE
Confidence            58999995 9999999999874 4677654443110      01111000000 001112345666654      37899


Q ss_pred             EEEccCchhHHHHHHH---HHHcCCcEEEeCCCCC
Q 031341          110 VIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQ  141 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~---al~~g~~vVigttg~~  141 (161)
                      +|.++.+....+.+..   .+..+..+|+-..|+.
T Consensus        72 vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~  106 (305)
T PRK12921         72 VILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG  106 (305)
T ss_pred             EEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence            9967655444444433   3334555555445775

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.30  E-value=0.024  Score=51.31  Aligned_cols=105  Identities=16%  Similarity=0.142  Sum_probs=59.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|+| +|+||+.+++.+. .-++++.+ +|+... .+..      .+.++...+++++++.      .+|+|+-..+
T Consensus       139 ktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~lP  202 (525)
T TIGR01327       139 KTLGVIG-LGRIGSIVAKRAK-AFGMKVLA-YDPYIS-PERA------EQLGVELVDDLDELLA------RADFITVHTP  202 (525)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHH------HhcCCEEcCCHHHHHh------hCCEEEEccC
Confidence            5899999 7999999999987 45888764 564311 1111      1235555578999986      7999985543


Q ss_pred             chhHH-----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          116 ASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       116 p~~~~-----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .....     +.....++.|.-+|--..|--.+ .+.|.++-++..+
T Consensus       203 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd-e~aL~~aL~~g~i  248 (525)
T TIGR01327       203 LTPETRGLIGAEELAKMKKGVIIVNCARGGIID-EAALYEALEEGHV  248 (525)
T ss_pred             CChhhccCcCHHHHhcCCCCeEEEEcCCCceeC-HHHHHHHHHcCCe
Confidence            22111     12233445554444322232222 2345555555444

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN02778 3,5-epimerase/4-reductase

Probab=96.29  E-value=0.048  Score=45.38  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=25.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLv   64 (161)
                      ...+||.|.|++|.+|+.+++.+.+ .+.+++
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~   37 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQE-QGIDFH   37 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence            3448999999999999999999874 467765

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.29  E-value=0.045  Score=46.70  Aligned_cols=96  Identities=18%  Similarity=0.196  Sum_probs=57.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee-CCH
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM-SDL   94 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~-~dl   94 (161)
                      ||.|+|+ |..|.++++.|. ..|+.=+-++|.+.                .|+.-.+.     ..+.....+..+ .++
T Consensus         1 kVlIVGa-GGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i   78 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANI   78 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence            6999995 999999999997 67888888998431                12111111     011001112111 111


Q ss_pred             ------HHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEe-CCCC
Q 031341           95 ------TMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVY-VPHI  140 (161)
Q Consensus        95 ------~~~l~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVig-ttg~  140 (161)
                            ++.+.      +.|+||++..+.... ..-..|.++++|+|-+ +.|+
T Consensus        79 ~~~~~~~~f~~------~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~  126 (312)
T cd01489          79 KDPDFNVEFFK------QFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGF  126 (312)
T ss_pred             CCccchHHHHh------cCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcc
Confidence                  23443      789999887554444 4447889999999853 4443

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=96.28  E-value=0.077  Score=44.09  Aligned_cols=109  Identities=14%  Similarity=0.186  Sum_probs=66.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-----eCCHHHHHhcccccCCccE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-----MSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-----~~dl~~~l~~~~~~~~~DV  109 (161)
                      +++|.|+|. =.=++.+++.+...+...++.....  .|.+..+..     ....+     ...+.+.+.+    .++|.
T Consensus         2 ~~~ilvlGG-T~Dar~la~~L~~~~~~~~~ss~t~--~g~~l~~~~-----~~~~~~G~l~~e~l~~~l~e----~~i~l   69 (257)
T COG2099           2 MMRILLLGG-TSDARALAKKLAAAPVDIILSSLTG--YGAKLAEQI-----GPVRVGGFLGAEGLAAFLRE----EGIDL   69 (257)
T ss_pred             CceEEEEec-cHHHHHHHHHhhccCccEEEEEccc--ccccchhcc-----CCeeecCcCCHHHHHHHHHH----cCCCE
Confidence            688999996 5678999999998885544433321  122222111     11111     1234455653    79999


Q ss_pred             EEEccCchhHH--HH-HHHHHHcCCcEE-EeCCCCC--------HHHHHHHHHHhhhc
Q 031341          110 VIDFTDASTVY--DN-VKQATAFGMRSV-VYVPHIQ--------LETVSALSAFCDKA  155 (161)
Q Consensus       110 VIDfT~p~~~~--~~-~~~al~~g~~vV-igttg~~--------~e~~~~L~~~A~~~  155 (161)
                      +||+|+|-+..  +| ++.|-+.|+|.+ ..-|++.        .++.+++.+++++.
T Consensus        70 lIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~  127 (257)
T COG2099          70 LIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQL  127 (257)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhcc
Confidence            99999998773  44 478899999988 3334332        24555666666643

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.26  E-value=0.073  Score=44.66  Aligned_cols=114  Identities=12%  Similarity=0.075  Sum_probs=58.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      .++||+|+|+ |.||..++..+.+ .+.++..+.....     .|.......+-.....+.++++.++ .      ..+|
T Consensus         4 ~~m~I~IiG~-GaiG~~lA~~L~~-~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~D   74 (313)
T PRK06249          4 ETPRIGIIGT-GAIGGFYGAMLAR-AGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PPCD   74 (313)
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CCCC
Confidence            4479999995 9999999998874 5777775554321     1111110001000001234445443 2      3689


Q ss_pred             EEEEccCchhHH---HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          109 VVIDFTDASTVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       109 VVIDfT~p~~~~---~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      +||-++......   +.+...+..+..+|.-.-|+..+  +.|.+..-+..|+
T Consensus        75 ~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~--e~l~~~~~~~~v~  125 (313)
T PRK06249         75 WVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE--EQLREILPAEHLL  125 (313)
T ss_pred             EEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH--HHHHHHCCCCcEE
Confidence            999665433333   33344444455555544577533  2344443333343

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.26  E-value=0.056  Score=47.49  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=26.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++||+|+| .|.||..++..+. ..|+++. ++|+
T Consensus         3 ~~kI~VIG-lG~~G~~~A~~La-~~G~~V~-~~D~   34 (415)
T PRK11064          3 FETISVIG-LGYIGLPTAAAFA-SRQKQVI-GVDI   34 (415)
T ss_pred             ccEEEEEC-cchhhHHHHHHHH-hCCCEEE-EEeC
Confidence            57999999 6999999999987 4578866 5564

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.26  E-value=0.069  Score=44.81  Aligned_cols=106  Identities=15%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCCCCCCeeeeCCH-HHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eL-vavvd~~~~g~~~~~~~g~~~~~~i~v~~dl-~~~l~~~~~~~~~DVVID  112 (161)
                      +.+|+|+| .|.||+.+++.+. ..+... +-..|...........+|...    ....+. .+..      ..+|+||-
T Consensus         3 ~~~v~IvG-~GliG~s~a~~l~-~~g~~v~i~g~d~~~~~~~~a~~lgv~d----~~~~~~~~~~~------~~aD~Viv   70 (279)
T COG0287           3 SMKVGIVG-LGLMGGSLARALK-EAGLVVRIIGRDRSAATLKAALELGVID----ELTVAGLAEAA------AEADLVIV   70 (279)
T ss_pred             CcEEEEEC-CchHHHHHHHHHH-HcCCeEEEEeecCcHHHHHHHhhcCccc----ccccchhhhhc------ccCCEEEE
Confidence            57999999 6999999999886 556654 333443221111111122210    011222 2222      36899995


Q ss_pred             ccCchhHHHHHHHHHH-cCCc-EEEeCCCCCHHHHHHHHHHh
Q 031341          113 FTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC  152 (161)
Q Consensus       113 fT~p~~~~~~~~~al~-~g~~-vVigttg~~~e~~~~L~~~A  152 (161)
                      .++.....+.++.... .+.. +|+.++..-..-.+.+.+..
T Consensus        71 avPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~  112 (279)
T COG0287          71 AVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL  112 (279)
T ss_pred             eccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence            5555666676665553 2222 45555544445555565555

>PLN02477 glutamate dehydrogenase

Probab=96.25  E-value=0.043  Score=48.49  Aligned_cols=110  Identities=17%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------CC-CeeeeCCHHHHHhccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSIS  102 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~------~~-~i~v~~dl~~~l~~~~  102 (161)
                      -.||+|.| +|++|+.+++.+. ..+..++++.|.+     ..|-|..++.....      .+ +... -+.++++.   
T Consensus       206 g~~VaIqG-fGnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~---  279 (410)
T PLN02477        206 GQTFVIQG-FGNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILV---  279 (410)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCcccee---
Confidence            37999999 6999999999886 6799999999953     45666555432110      00 1111 24455665   


Q ss_pred             ccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                        .++||++=++..... .+++.   +-+..+|+|-.  .++++..+.|.    +.+|++
T Consensus       280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L~----~rGI~~  330 (410)
T PLN02477        280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEILR----KKGVVV  330 (410)
T ss_pred             --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHHH----HCCcEE
Confidence              489999966544433 34444   35889998864  35666555553    445554

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.24  E-value=0.031  Score=44.31  Aligned_cols=46  Identities=24%  Similarity=0.335  Sum_probs=36.0

Q ss_pred             eeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           23 RFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        23 ~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      |-|.-|....|.+   .||.|+|+ |.+|.++++.|. ..|+.=+.++|.+
T Consensus         4 Rqi~l~G~~~q~~L~~s~VlviG~-gglGsevak~L~-~~GVg~i~lvD~d   52 (198)
T cd01485           4 RQIRLWGDEAQNKLRSAKVLIIGA-GALGAEIAKNLV-LAGIDSITIVDHR   52 (198)
T ss_pred             ceeeccCHHHHHHHhhCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            5555566666654   69999995 899999999997 7788877788843

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.21  E-value=0.037  Score=48.01  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++||.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        60 ~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R~   93 (390)
T PLN02657         60 DVTVLVVGATGYIGKFVVRELVR-RGYNVVAVARE   93 (390)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEec
Confidence            47999999999999999999974 58998887653

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=96.21  E-value=0.044  Score=48.79  Aligned_cols=92  Identities=17%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC----------------CCcchhhhh-----cCCCCCCeee
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS----------------VGEDIGMVC-----DMEQPLEIPV   90 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~-----eLvavvd~~~----------------~g~~~~~~~-----g~~~~~~i~v   90 (161)
                      ||.|+|+ |..|.++++.+. ..|+     .-+-++|.+.                .|+.-.+.+     .+.....+..
T Consensus         1 kVlvVGa-GGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a   78 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFA-LMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA   78 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence            6899995 999999999987 6777     5566888421                122111111     1110112211


Q ss_pred             e-CCH---------HHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEe
Q 031341           91 M-SDL---------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus        91 ~-~dl---------~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVig  136 (161)
                      + ..+         ++.+      ...|+||++.. +++-...-..|..+++|+|-+
T Consensus        79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~  129 (435)
T cd01490          79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLES  129 (435)
T ss_pred             EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEE
Confidence            2 111         1222      36899998874 444455668999999999844

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=96.18  E-value=0.091  Score=40.10  Aligned_cols=85  Identities=22%  Similarity=0.257  Sum_probs=53.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      ++.|+|+ |..|+.+++.+. ..++++++.+|.....  .++.     -.++|++.+.+++... .  ...+ +++....
T Consensus         1 ~~~I~Ga-g~~g~~~~~~l~-~~g~~vvgfid~~~~~--~~~~-----i~g~pvlg~~~~l~~~-~--~~~~~~iiai~~   68 (201)
T TIGR03570         1 KLVIIGA-GGHGRVVADIAE-DSGWEIVGFLDDNPAL--QGTS-----VDGLPVLGGDEDLLRY-P--PDEVDLVVAIGD   68 (201)
T ss_pred             CEEEEcC-CHHHHHHHHHHH-hCCCEEEEEEcCCccc--cCcc-----cCCccEECCHHHHhhh-c--ccccEEEEEcCC
Confidence            5889995 999999999986 5699999999954211  1111     2467887666654321 0  1234 4443334


Q ss_pred             chhHHHHHHHHHHcCCcE
Q 031341          116 ASTVYDNVKQATAFGMRS  133 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~v  133 (161)
                      +....+....+.+.+..+
T Consensus        69 ~~~~~~i~~~l~~~g~~~   86 (201)
T TIGR03570        69 NKLRRRLFEKLKAKGYRF   86 (201)
T ss_pred             HHHHHHHHHHHHhCCCcc
Confidence            454456666666776544

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PLN02494 adenosylhomocysteinase

Probab=96.17  E-value=0.031  Score=50.22  Aligned_cols=109  Identities=12%  Similarity=0.093  Sum_probs=61.5

Q ss_pred             EeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccC
Q 031341           26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (161)
Q Consensus        26 ~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~  105 (161)
                      ++.++....--+|+|+| +|.+|+.+++.+. .-+++++ +++++..  ...+..    ..|..+. ++++++.      
T Consensus       245 ~r~t~i~LaGKtVvViG-yG~IGr~vA~~ak-a~Ga~VI-V~e~dp~--r~~eA~----~~G~~vv-~leEal~------  308 (477)
T PLN02494        245 MRATDVMIAGKVAVICG-YGDVGKGCAAAMK-AAGARVI-VTEIDPI--CALQAL----MEGYQVL-TLEDVVS------  308 (477)
T ss_pred             HHhcCCccCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCch--hhHHHH----hcCCeec-cHHHHHh------
Confidence            33444433336899999 6999999999987 4488855 4654321  111110    1233332 6788775      


Q ss_pred             CccEEEEccCchh-HHHHHHHHHHcCCcEE-EeCCCCCHHHHHHHHHH
Q 031341          106 ARAVVIDFTDAST-VYDNVKQATAFGMRSV-VYVPHIQLETVSALSAF  151 (161)
Q Consensus       106 ~~DVVIDfT~p~~-~~~~~~~al~~g~~vV-igttg~~~e~~~~L~~~  151 (161)
                      .+|++|..|.... ........++.|--++ +|-.+ +.-+.+.|.++
T Consensus       309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~-~eID~~aL~~~  355 (477)
T PLN02494        309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD-NEIDMLGLETY  355 (477)
T ss_pred             hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC-CccCHHHHhhc
Confidence            6899998664333 3344455566665444 33321 23334556665

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.15  E-value=0.17  Score=42.86  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=27.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      +..||+|+|+ |.||..++..+....-.+ +.++|.+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~   38 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVI   38 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECC
Confidence            4579999996 999999998877443256 7788853

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.15  E-value=0.072  Score=47.69  Aligned_cols=112  Identities=13%  Similarity=0.121  Sum_probs=72.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---h-----------cCCC-CCCeeeeCCHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---C-----------DMEQ-PLEIPVMSDLT   95 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~---~-----------g~~~-~~~i~v~~dl~   95 (161)
                      .||+|-| +|++|+..++.+. ..|.+++++.|++     ..|-+..++   .           +... ..+.... +-+
T Consensus       238 k~VaVqG-~GnVg~~aa~~L~-e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~~  314 (454)
T PTZ00079        238 KTVVVSG-SGNVAQYAVEKLL-QLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PGK  314 (454)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CCc
Confidence            6999999 6999999999887 5799999999953     345544333   1           1100 0122222 234


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +++.     .++|+++=+.+.+.. .+++...++++..+|++-.  ..+++..+.|    ++++|+|
T Consensus       315 ~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L----~~~GI~~  372 (454)
T PTZ00079        315 KPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF----KKNGVIF  372 (454)
T ss_pred             Cccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH----HHCCcEE
Confidence            5554     479999966655444 5788888899999999864  3455544444    3445554

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.15  E-value=0.064  Score=43.87  Aligned_cols=93  Identities=15%  Similarity=0.165  Sum_probs=55.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhhh-----cCCCCCCe-eeeCCH
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMVC-----DMEQPLEI-PVMSDL   94 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~~-----g~~~~~~i-~v~~dl   94 (161)
                      ||.|+|+ |..|.++++.+. ..|+.=.-++|.+.                .|+...+.+     .+....++ +...++
T Consensus         1 kVlvvG~-GGlG~eilk~La-~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLA-LMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV   78 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            6899995 999999999997 56777777888421                121111110     11001112 111222


Q ss_pred             -------HHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeC
Q 031341           95 -------TMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYV  137 (161)
Q Consensus        95 -------~~~l~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVigt  137 (161)
                             ++.+      .++|+||++...-... ..-..|.+.++|+|-+-
T Consensus        79 ~~~~~~~~~f~------~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g  123 (234)
T cd01484          79 GPEQDFNDTFF------EQFHIIVNALDNIIARRYVNGMLIFLIVPLIESG  123 (234)
T ss_pred             ChhhhchHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence                   2233      3799999987544443 45578899999999553

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK14851 hypothetical protein; Provisional

Probab=96.14  E-value=0.049  Score=51.00  Aligned_cols=102  Identities=23%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             eCCCCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhhhh-----cCC
Q 031341           28 STNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGMVC-----DME   83 (161)
Q Consensus        28 ~~~~~~~---~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~----------------~~g~~~~~~~-----g~~   83 (161)
                      +....|.   .-||+|+|+ |..|..++..+. ..|+.=.-++|.+                ..|++..+.+     .+.
T Consensus        33 ~g~e~Q~kL~~~~VlIvG~-GGlGs~va~~La-r~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in  110 (679)
T PRK14851         33 FTPGEQERLAEAKVAIPGM-GGVGGVHLITMV-RTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN  110 (679)
T ss_pred             cCHHHHHHHhcCeEEEECc-CHHHHHHHHHHH-HhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC
Confidence            3444454   479999995 999999999987 5556555567732                1122211111     111


Q ss_pred             CCCCeeee------CCHHHHHhcccccCCccEEEEccCchh--H-HHHHHHHHHcCCcEEEeC
Q 031341           84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTDAST--V-YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~p~~--~-~~~~~~al~~g~~vVigt  137 (161)
                      ...++..+      +++++.+.      ++|+|||++....  . ......|.++++|+|.+.
T Consensus       111 P~~~I~~~~~~i~~~n~~~~l~------~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g  167 (679)
T PRK14851        111 PFLEITPFPAGINADNMDAFLD------GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG  167 (679)
T ss_pred             CCCeEEEEecCCChHHHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence            11233222      23455664      7999999986422  2 344568999999999775

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=96.13  E-value=0.029  Score=45.94  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=27.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++|.|.|++|.+|+.+++.+.+ .+.++.++..+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~-~g~~V~~~~r~   33 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLE-QGEEVRVLVRP   33 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHH-CCCEEEEEEec
Confidence            4799999999999999999984 47887776653

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.12  E-value=0.047  Score=48.22  Aligned_cols=111  Identities=18%  Similarity=0.227  Sum_probs=66.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-------CCCCeeeeCCHHHHHhcc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~-------~~~~i~v~~dl~~~l~~~  101 (161)
                      +-.||+|-| +|+.|+..++.+.+. +.+|+++.|+.     ..|-|...++...       ...+....+. ++++.  
T Consensus       206 ~G~rVaVQG-~GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~--  280 (411)
T COG0334         206 EGARVAVQG-FGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE--  280 (411)
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc--
Confidence            458999999 799999999998755 99999999953     2444433332111       0112222222 66665  


Q ss_pred             cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                         .++|+++=+...+.. .+++..... +  +|.|-.  ..+++..+.|.    +.+|+|
T Consensus       281 ---~~cDIl~PcA~~n~I~~~na~~l~a-k--~V~EgAN~P~t~eA~~i~~----erGIl~  331 (411)
T COG0334         281 ---VDCDILIPCALENVITEDNADQLKA-K--IVVEGANGPTTPEADEILL----ERGILV  331 (411)
T ss_pred             ---ccCcEEcccccccccchhhHHHhhh-c--EEEeccCCCCCHHHHHHHH----HCCCEE
Confidence               489998855554444 344443333 2  777754  34555544444    566665

>KOG2742 consensus Predicted oxidoreductase [General function prediction only]

Probab=96.11  E-value=0.0045  Score=53.37  Aligned_cols=109  Identities=16%  Similarity=0.111  Sum_probs=77.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |. |+|.| +|-..|..+=.+.+.+ +++-|+-.+... ....+ +   ....++. ++.+++.+..    .+.|.|...
T Consensus         3 Pg-v~v~G-Tg~~arv~iP~l~e~~-f~v~A~w~Rt~~-ea~a~-a---a~~~v~~~t~~~deiLl~----~~vdlv~i~   70 (367)
T KOG2742|consen    3 PG-VGVFG-TGIFARVLIPLLKEEG-FEVKAIWGRTKT-EAKAK-A---AEMNVRKYTSRLDEILLD----QDVDLVCIS   70 (367)
T ss_pred             Cc-eeEec-cChhHhhhhhhhhhcc-chHhhhhchhhh-HHHHh-h---hccchhhccccchhhhcc----CCcceeEec
Confidence            45 99999 7999999977776555 998888877321 11111 1   1234444 5688888764    577766645


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~  155 (161)
                      -+|..+.+...+++..|+|||+.++.-+.++.+.+.++++..
T Consensus        71 lpp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s~  112 (367)
T KOG2742|consen   71 LPPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYSP  112 (367)
T ss_pred             cCCccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhch
Confidence            577778899999999999999999876667777776665443

>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]

Probab=96.09  E-value=0.046  Score=47.33  Aligned_cols=127  Identities=19%  Similarity=0.254  Sum_probs=74.9

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhhcCC------
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------   83 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~---------------------~~~eLvavvd~--~~~g~~~~~~~g~~------   83 (161)
                      ..|+||+|+| -|+-.+.+++-+..-                     .+.|+++..|.  .+.|+++.+..-..      
T Consensus         3 ~~~vrv~iiG-~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~   81 (362)
T COG1260           3 TTMVRVAIIG-VGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK   81 (362)
T ss_pred             cceEEEEEEe-ccchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence            4689999999 599988888766533                     25688888883  34566655543110      


Q ss_pred             -----CCCCeeee---------CCHHHHHhccc--------------ccCCccEEEEccC---chhHHHHHHHHHHcCCc
Q 031341           84 -----QPLEIPVM---------SDLTMVLGSIS--------------QSKARAVVIDFTD---ASTVYDNVKQATAFGMR  132 (161)
Q Consensus        84 -----~~~~i~v~---------~dl~~~l~~~~--------------~~~~~DVVIDfT~---p~~~~~~~~~al~~g~~  132 (161)
                           -+.|+.+-         ..+++.+.+++              +....|+++.|.+   .++..-++..+++.|++
T Consensus        82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a  161 (362)
T COG1260          82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA  161 (362)
T ss_pred             eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence                 01111110         11222222100              1223333444432   23446788999999999


Q ss_pred             EEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          133 SVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       133 vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      .|-.+|.+... ...+.+++++.++...|
T Consensus       162 fvN~~P~~iA~-dP~~~~~fee~g~pi~G  189 (362)
T COG1260         162 FVNAIPVFIAS-DPAWVELFEEKGLPIAG  189 (362)
T ss_pred             eecccCccccC-CHHHHHHHHHcCCceec
Confidence            99988855332 35588999998887665

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.07  E-value=0.045  Score=49.41  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -||+|+|+ |.||+.|+..+. ..|++++ ++|++
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la-~aG~~V~-l~D~~   39 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAA-QAGHTVL-LYDAR   39 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence            47999995 999999999887 6689876 67754

>PRK05086 malate dehydrogenase; Provisional

Probab=96.06  E-value=0.087  Score=44.64  Aligned_cols=71  Identities=24%  Similarity=0.284  Sum_probs=41.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCC-CCCeee----eCCHHHHHhcccccCCccE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPV----MSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~g~~~~~~~g~~~-~~~i~v----~~dl~~~l~~~~~~~~~DV  109 (161)
                      +||+|+|++|++|+.++..+.. .+....+.++|+....  .+....+.. +....+    .+++.+.+.      ++|+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~alDl~~~~~~~~i~~~~~~d~~~~l~------~~Di   72 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGVAVDLSHIPTAVKIKGFSGEDPTPALE------GADV   72 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cceehhhhcCCCCceEEEeCCCCHHHHcC------CCCE
Confidence            6999999999999999988854 3444555566643221  111111111 111222    246556664      7999


Q ss_pred             EEEcc
Q 031341          110 VIDFT  114 (161)
Q Consensus       110 VIDfT  114 (161)
                      ||.+.
T Consensus        73 VIita   77 (312)
T PRK05086         73 VLISA   77 (312)
T ss_pred             EEEcC
Confidence            98655

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.05  E-value=0.11  Score=44.30  Aligned_cols=40  Identities=18%  Similarity=0.193  Sum_probs=31.3

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        30 ~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |+..+|.||+|+|+.|++|+.++..+...+-..-+..+|.
T Consensus         3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            5566789999999779999999998875555544557775

>PRK14852 hypothetical protein; Provisional

Probab=96.02  E-value=0.052  Score=52.64  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             EEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhhh-----h
Q 031341           25 ISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGMV-----C   80 (161)
Q Consensus        25 ~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~----------------~~g~~~~~~-----~   80 (161)
                      |.-+....|.+   -||+|+|+ |+.|..++..+. ..|+.=.-++|.+                ..|++..+.     .
T Consensus       319 i~lig~e~Q~kL~~srVlVvGl-GGlGs~ia~~LA-raGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~  396 (989)
T PRK14852        319 LGLVDYAGQRRLLRSRVAIAGL-GGVGGIHLMTLA-RTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERAL  396 (989)
T ss_pred             HhhcCHHHHHHHhcCcEEEECC-cHHHHHHHHHHH-HcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHH
Confidence            33355555643   69999995 999999999997 5566555677732                112221111     1


Q ss_pred             cCCCCCCeeee------CCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHHHcCCcEEEeCC
Q 031341           81 DMEQPLEIPVM------SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus        81 g~~~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~g~~vVigtt  138 (161)
                      .++...++.++      +++++.+.      ++|+|||.+..   +.-......|.++|+|+|.+..
T Consensus       397 ~INP~v~I~~~~~~I~~en~~~fl~------~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~  457 (989)
T PRK14852        397 SVNPFLDIRSFPEGVAAETIDAFLK------DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP  457 (989)
T ss_pred             HHCCCCeEEEEecCCCHHHHHHHhh------CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence            11112233333      34555553      79999998753   2223455678999999997754

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.01  E-value=0.038  Score=47.15  Aligned_cols=73  Identities=16%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC------cEEEEEEecCC-----CCcchhhhhcCC--CCCCeeeeCCHHHHHhc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAIDSHS-----VGEDIGMVCDME--QPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~------~eLvavvd~~~-----~g~~~~~~~g~~--~~~~i~v~~dl~~~l~~  100 (161)
                      .|+||+|+||+|++|+.++..+...+-      .+|+. +|+..     .|. ..++....  ...++.+..++.+.+. 
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~-~~Dl~d~~~~~~~~~~~~~~~~~~l~-   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGV-VMELQDCAFPLLKSVVATTDPEEAFK-   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEcCCccccccce-eeehhhccccccCCceecCCHHHHhC-
Confidence            368999999889999999999886442      36764 56421     121 11221100  0113444567666664 


Q ss_pred             ccccCCccEEEEcc
Q 031341          101 ISQSKARAVVIDFT  114 (161)
Q Consensus       101 ~~~~~~~DVVIDfT  114 (161)
                           ++|+||-..
T Consensus        78 -----~aDiVI~tA   86 (325)
T cd01336          78 -----DVDVAILVG   86 (325)
T ss_pred             -----CCCEEEEeC
Confidence                 899988544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.99  E-value=0.054  Score=43.11  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=27.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ..||+|+|+ |.||+.++..+. ..|+.=+-++|.+
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La-~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLA-RAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHH-HcCCCEEEEECCC
Confidence            368999996 999999999997 5677545578853

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.98  E-value=0.058  Score=47.66  Aligned_cols=87  Identities=17%  Similarity=0.144  Sum_probs=52.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~--~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVI  111 (161)
                      -||+|+| .|+.|+.+++.+. ..|.++. +.|......  +..+.+   .+.|+.++  .+..+.+.      ++|+||
T Consensus        15 ~~i~v~G-~G~sG~a~a~~L~-~~G~~V~-~~D~~~~~~~~~~~~~l---~~~gi~~~~~~~~~~~~~------~~dlVV   82 (458)
T PRK01710         15 KKVAVVG-IGVSNIPLIKFLV-KLGAKVT-AFDKKSEEELGEVSNEL---KELGVKLVLGENYLDKLD------GFDVIF   82 (458)
T ss_pred             CeEEEEc-ccHHHHHHHHHHH-HCCCEEE-EECCCCCccchHHHHHH---HhCCCEEEeCCCChHHhc------cCCEEE
Confidence            4899999 6999999998876 6678754 577432111  111111   13455553  22234343      689888


Q ss_pred             EccC-chhHHHHHHHHHHcCCcEEE
Q 031341          112 DFTD-ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       112 DfT~-p~~~~~~~~~al~~g~~vVi  135 (161)
                       .|+ -....+.+.+|.+.|++++.
T Consensus        83 -~Spgi~~~~p~~~~a~~~~i~i~s  106 (458)
T PRK01710         83 -KTPSMRIDSPELVKAKEEGAYITS  106 (458)
T ss_pred             -ECCCCCCCchHHHHHHHcCCcEEe
Confidence             552 12234677888889988764

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.98  E-value=0.066  Score=45.82  Aligned_cols=63  Identities=24%  Similarity=0.203  Sum_probs=44.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..|||+| +|++|+.+++.+. .=||++. ++|+.. ..+...      ..++.-..++++++.      ..|+|+-.+
T Consensus       143 kTvGIiG-~G~IG~~va~~l~-afgm~v~-~~d~~~-~~~~~~------~~~~~~~~~Ld~lL~------~sDiv~lh~  205 (324)
T COG0111         143 KTVGIIG-LGRIGRAVAKRLK-AFGMKVI-GYDPYS-PRERAG------VDGVVGVDSLDELLA------EADILTLHL  205 (324)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCeEE-EECCCC-chhhhc------cccceecccHHHHHh------hCCEEEEcC
Confidence            5899999 6999999999886 5588877 456421 111111      223444578999996      699988655

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.95  E-value=0.018  Score=49.32  Aligned_cols=86  Identities=13%  Similarity=0.108  Sum_probs=53.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhhcCCCCCCeeeeCCHHH-HHhcccccCCccE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLv---avvd~-~~~g~~~~~~~g~~~~~~i~v~~dl~~-~l~~~~~~~~~DV  109 (161)
                      .++|+| ||||-.|+.+++.|. ..++.+-   -+.+. ...|+.+    .+. ...+.+- ++++ .+      .++|+
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Le-er~fpv~~l~l~~s~~~s~gk~i----~f~-g~~~~V~-~l~~~~f------~~vDi   68 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALE-QSDLEIEQISIVEIEPFGEEQGI----RFN-NKAVEQI-APEEVEW------ADFNY   68 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHH-hcCCchhheeecccccccCCCEE----EEC-CEEEEEE-ECCccCc------ccCCE
Confidence            378999 999999999999776 4555432   22222 2233322    111 1233332 3333 33      37999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEE
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      ++ |+..+...+.+..+.++|..||-
T Consensus        69 a~-fag~~~s~~~ap~a~~aG~~VID   93 (322)
T PRK06901         69 VF-FAGKMAQAEHLAQAAEAGCIVID   93 (322)
T ss_pred             EE-EcCHHHHHHHHHHHHHCCCEEEE
Confidence            98 76566667889999999999884

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=95.94  E-value=0.025  Score=47.45  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=28.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |.||.|.|++|.+|+.+++.+.+ .+.+++.++++
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~   34 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK   34 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence            46899999999999999999984 46666666664

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=95.94  E-value=0.043  Score=49.55  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -||+|+|+ |.||+.|+..+. ..|++++ ++|++
T Consensus         6 ~kV~VIGa-G~MG~gIA~~la-~aG~~V~-l~d~~   37 (503)
T TIGR02279         6 VTVAVIGA-GAMGAGIAQVAA-SAGHQVL-LYDIR   37 (503)
T ss_pred             cEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence            47999995 999999999887 6688876 67753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=95.94  E-value=0.11  Score=44.78  Aligned_cols=110  Identities=15%  Similarity=0.064  Sum_probs=62.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|+| .|++|+.+++.|.... +++..=-..........+       .+.. +.|+++.+.      +.|++|-..+
T Consensus       163 K~vgilG-~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~-------~~~~-~~d~~~~~~------~sD~ivv~~p  226 (336)
T KOG0069|consen  163 KTVGILG-LGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYE-------YYAE-FVDIEELLA------NSDVIVVNCP  226 (336)
T ss_pred             CEEEEec-CcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHH-------hccc-ccCHHHHHh------hCCEEEEecC
Confidence            4899999 5999999999998744 544432222211111111       1111 468899885      7998886553


Q ss_pred             --chhH-HHHHHHHHHcCCcEEEeCCCC-CHHHHHHHHHHhhhcCeeecC
Q 031341          116 --ASTV-YDNVKQATAFGMRSVVYVPHI-QLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       116 --p~~~-~~~~~~al~~g~~vVigttg~-~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                        +++. .-+-+.....+.-.|+-.++. .--+.+++.++.++-.+..+|
T Consensus       227 Lt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aG  276 (336)
T KOG0069|consen  227 LTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAG  276 (336)
T ss_pred             CCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCccccc
Confidence              2222 234455556666666555521 111234577777776665554

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.94  E-value=0.061  Score=48.41  Aligned_cols=84  Identities=11%  Similarity=0.117  Sum_probs=50.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      --+|+|+| +|++|+.+++.+. .-+++++ +++++.. ... +..    ..|+. +.++++++.      .+|+||..+
T Consensus       254 GKtVgVIG-~G~IGr~vA~rL~-a~Ga~Vi-V~e~dp~-~a~-~A~----~~G~~-~~~leell~------~ADIVI~at  317 (476)
T PTZ00075        254 GKTVVVCG-YGDVGKGCAQALR-GFGARVV-VTEIDPI-CAL-QAA----MEGYQ-VVTLEDVVE------TADIFVTAT  317 (476)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCch-hHH-HHH----hcCce-eccHHHHHh------cCCEEEECC
Confidence            36899999 6999999999887 5678754 5654321 110 000    12333 247888875      799999876


Q ss_pred             CchhH-HHHHHHHHHcCCcEE
Q 031341          115 DASTV-YDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~-~~~~~~al~~g~~vV  134 (161)
                      ..... .......++.|.-++
T Consensus       318 Gt~~iI~~e~~~~MKpGAiLI  338 (476)
T PTZ00075        318 GNKDIITLEHMRRMKNNAIVG  338 (476)
T ss_pred             CcccccCHHHHhccCCCcEEE
Confidence            43222 233444445554433

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.93  E-value=0.12  Score=44.02  Aligned_cols=63  Identities=16%  Similarity=0.088  Sum_probs=42.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|||+| +|++|+.+++.+...=|++++ ++|+... .....      ..++. +.+++++++      .+|+|+-..
T Consensus       146 ktvGIiG-~G~IG~~va~~l~~~fgm~V~-~~~~~~~-~~~~~------~~~~~-~~~l~ell~------~sDvv~lh~  208 (323)
T PRK15409        146 KTLGIVG-MGRIGMALAQRAHFGFNMPIL-YNARRHH-KEAEE------RFNAR-YCDLDTLLQ------ESDFVCIIL  208 (323)
T ss_pred             CEEEEEc-ccHHHHHHHHHHHhcCCCEEE-EECCCCc-hhhHH------hcCcE-ecCHHHHHH------hCCEEEEeC
Confidence            6899999 799999999987523478876 4554321 11111      22333 469999996      799988544

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.90  E-value=0.041  Score=50.39  Aligned_cols=89  Identities=13%  Similarity=0.213  Sum_probs=60.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC--HHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d--l~~~l~~~~~~~~~DVVID  112 (161)
                      ..|+.|+|| |.-|..+++.+...+.+.+||++|.+.  .    ..|.. =.|+||+..  +++++++    ...+-++.
T Consensus       116 ~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~--~----~~g~~-i~Gv~V~g~~~i~~~v~~----~~~~~iii  183 (588)
T COG1086         116 RIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP--D----LTGMK-IRGVPVLGRIEIERVVEE----LGIQLILI  183 (588)
T ss_pred             CCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh--h----hcCCE-EeceeeechhHHHHHHHH----cCCceEEE
Confidence            489999996 999999999999999999999999542  1    11211 246788744  4455553    56774442


Q ss_pred             cc---CchhHHHHHHHHHHcCCcEEE
Q 031341          113 FT---DASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       113 fT---~p~~~~~~~~~al~~g~~vVi  135 (161)
                      +-   .++...+.++.+-+.|+.+=+
T Consensus       184 Aips~~~~~~~~i~~~l~~~~~~v~~  209 (588)
T COG1086         184 AIPSASQEERRRILLRLARTGIAVRI  209 (588)
T ss_pred             ecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence            32   233344667788888866543

>PRK06091 membrane protein FdrA; Validated

Probab=95.90  E-value=0.044  Score=50.07  Aligned_cols=72  Identities=8%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             CeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341           87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus        87 ~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ..|.+.++.++...+   .++|+++.+.++..+.+.++.|++.|+++++-+.|+..+..++|.++|++.++..-|
T Consensus       101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmG  172 (555)
T PRK06091        101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLLVMG  172 (555)
T ss_pred             CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEEC
Confidence            456778888887642   467988877777888899999999999999988899888889999999999887655

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=95.88  E-value=0.071  Score=43.54  Aligned_cols=30  Identities=27%  Similarity=0.529  Sum_probs=23.5

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~   69 (161)
                      |.|.|++|.+|+.+++.+.+. +. ++++ +++
T Consensus         1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence            579999999999999999855 55 5654 453

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=95.85  E-value=0.067  Score=46.90  Aligned_cols=115  Identities=10%  Similarity=0.083  Sum_probs=65.5

Q ss_pred             EEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhhh----cC---------C---CCCCeeeeCCHHHHHh
Q 031341           40 INGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMVC----DM---------E---QPLEIPVMSDLTMVLG   99 (161)
Q Consensus        40 ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g---~~~~~~~----g~---------~---~~~~i~v~~dl~~~l~   99 (161)
                      |.|+||.+|+..++.+.++| +++++++..+....   +.+.++-    .+         .   ...++.++...+.+.+
T Consensus         1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~   80 (383)
T PRK12464          1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLIA   80 (383)
T ss_pred             CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHH
Confidence            57999999999999988764 59999999843210   0011100    00         0   0012333333332211


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~  155 (161)
                       ++....+|.|+-...-.+...-...++++|+.+-..+-.--.---+.+.+++++.
T Consensus        81 -l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~  135 (383)
T PRK12464         81 -VATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANKETLVAAGHIVTDLAKQN  135 (383)
T ss_pred             -HHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHc
Confidence             1223568999966666667788888999999988754211111223455555554

>PRK07877 hypothetical protein; Provisional

Probab=95.85  E-value=0.055  Score=51.02  Aligned_cols=102  Identities=19%  Similarity=0.255  Sum_probs=61.5

Q ss_pred             eCCCCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC---------------CCCcchhhh-----hcCC
Q 031341           28 STNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH---------------SVGEDIGMV-----CDME   83 (161)
Q Consensus        28 ~~~~~~~---~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~---------------~~g~~~~~~-----~g~~   83 (161)
                      .....|.   .-||+|+|+ | .|..++..|. ..|+ -=.-++|.+               ..|++..+.     ..+.
T Consensus        97 ig~~~Q~~L~~~~V~IvG~-G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in  173 (722)
T PRK07877         97 ITAEEQERLGRLRIGVVGL-S-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD  173 (722)
T ss_pred             CCHHHHHHHhcCCEEEEEe-c-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC
Confidence            3444554   369999997 8 9999999887 4453 333466632               112221111     1111


Q ss_pred             CCCCeeee------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031341           84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus        84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt  138 (161)
                      ....+..+      +++++++.      ++|+|||++..-.. ...-..|.++|+|+|+|+.
T Consensus       174 p~i~v~~~~~~i~~~n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~  229 (722)
T PRK07877        174 PYLPVEVFTDGLTEDNVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS  229 (722)
T ss_pred             CCCEEEEEeccCCHHHHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            11233222      24666664      79999999954444 4455889999999999874

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=95.85  E-value=0.079  Score=43.97  Aligned_cols=93  Identities=14%  Similarity=0.116  Sum_probs=53.3

Q ss_pred             EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----CCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        39 ~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~----~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .|.|++|.+|+.+++.|++.....=|-+.|+..............    -..++.-.++++++++      ++|+||-..
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~------g~d~V~H~A   74 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE------GVDVVFHTA   74 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc------CCceEEEeC
Confidence            378999999999999999776533344555322111101111100    0112222345666674      799999764


Q ss_pred             Cc---h--------------hHHHHHHHHHHcCCcEEEeC
Q 031341          115 DA---S--------------TVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       115 ~p---~--------------~~~~~~~~al~~g~~vVigt  137 (161)
                      .|   .              +....+..|.++++.-++-|
T Consensus        75 a~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt  114 (280)
T PF01073_consen   75 APVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT  114 (280)
T ss_pred             ccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            22   1              22345678889998866554

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.83  E-value=0.088  Score=42.95  Aligned_cols=95  Identities=19%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~--   91 (161)
                      ..||.|+|+ |..|+.++++|. ..|+.=.-++|.+.                .|++..+.     ..+.....+..+  
T Consensus        11 ~~~VlVvG~-GGvGs~va~~La-r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALA-RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            368999995 999999999997 55665555777421                11111110     011001112112  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEe
Q 031341           92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVig  136 (161)
                          +++++.+.     .++|+|||+. ++..-......|.++++|+|..
T Consensus        89 ~i~~~~~~~l~~-----~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s  133 (231)
T cd00755          89 FLTPDNSEDLLG-----GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS  133 (231)
T ss_pred             ecCHhHHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence                23445553     3699999987 4555567778999999999954

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.82  E-value=0.068  Score=48.45  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++. ++|+... .....      ..++... ++++++.      .+|+|+...+
T Consensus       141 ktvgIiG-~G~IG~~vA~~l~-~fG~~V~-~~d~~~~-~~~~~------~~g~~~~-~l~ell~------~aDiV~l~lP  203 (526)
T PRK13581        141 KTLGIIG-LGRIGSEVAKRAK-AFGMKVI-AYDPYIS-PERAA------QLGVELV-SLDELLA------RADFITLHTP  203 (526)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCEEE-EECCCCC-hhHHH------hcCCEEE-cHHHHHh------hCCEEEEccC
Confidence            6899999 6999999999987 5588876 4564321 11111      2344444 8999986      6899885443


Q ss_pred             ch-hHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          116 AS-TVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       116 p~-~~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .. ...    ......++.|.-+|--..|--.+ .+.|.++-++..+
T Consensus       204 ~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd-e~aL~~aL~~g~i  249 (526)
T PRK13581        204 LTPETRGLIGAEELAKMKPGVRIINCARGGIID-EAALAEALKSGKV  249 (526)
T ss_pred             CChHhhcCcCHHHHhcCCCCeEEEECCCCceeC-HHHHHHHHhcCCe
Confidence            22 111    23344455565444322332222 2345555544443

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.76  E-value=0.033  Score=46.99  Aligned_cols=92  Identities=7%  Similarity=-0.028  Sum_probs=60.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCC--CeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPL--EIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~-~~~~--~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      .-+++|+| +|..|+.+++.+.....++=+-+++++..  +...+... ....  .+.+.++.+++..      ++|+|+
T Consensus       117 a~~l~iiG-aG~QA~~~~~a~~~v~~i~~v~v~~r~~~--~a~~f~~~~~~~~~~~v~~~~~~~eav~------~aDIV~  187 (301)
T PRK06407        117 VENFTIIG-SGFQAETQLEGMASVYNPKRIRVYSRNFD--HARAFAERFSKEFGVDIRPVDNAEAALR------DADTIT  187 (301)
T ss_pred             CcEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEE
Confidence            36799999 59999999999998888888889986531  11121110 0112  3555789999985      799999


Q ss_pred             EccCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341          112 DFTDASTVYDNV-KQATAFGMRSV-VYV  137 (161)
Q Consensus       112 DfT~p~~~~~~~-~~al~~g~~vV-igt  137 (161)
                      =+| |... +.+ ...++.|.||. +|.
T Consensus       188 taT-~s~~-P~~~~~~l~pg~hV~aiGs  213 (301)
T PRK06407        188 SIT-NSDT-PIFNRKYLGDEYHVNLAGS  213 (301)
T ss_pred             Eec-CCCC-cEecHHHcCCCceEEecCC
Confidence            544 3322 222 23457788876 453

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.75  E-value=0.091  Score=44.38  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ++.||.|.|++|.+|+.+++.|.+. +.+++++..
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d~   47 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLDN   47 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence            4579999999999999999999855 788876654

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.75  E-value=0.043  Score=48.54  Aligned_cols=84  Identities=21%  Similarity=0.261  Sum_probs=56.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -||.|+|+ |.||..+++.+. ..++.-+-++.++.  .++.+++.   +.+  +.-++++.+.+.      ++||||-.
T Consensus       179 ~~vlvIGA-Gem~~lva~~L~-~~g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l~------~~DvViss  245 (414)
T COG0373         179 KKVLVIGA-GEMGELVAKHLA-EKGVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEALA------EADVVISS  245 (414)
T ss_pred             CeEEEEcc-cHHHHHHHHHHH-hCCCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhhh------hCCEEEEe
Confidence            57999996 999999999987 55666677887764  22333332   223  333456666664      79999976


Q ss_pred             c-Cch--hHHHHHHHHHHcCCc
Q 031341          114 T-DAS--TVYDNVKQATAFGMR  132 (161)
Q Consensus       114 T-~p~--~~~~~~~~al~~g~~  132 (161)
                      | .|+  ...+....+++...+
T Consensus       246 Tsa~~~ii~~~~ve~a~~~r~~  267 (414)
T COG0373         246 TSAPHPIITREMVERALKIRKR  267 (414)
T ss_pred             cCCCccccCHHHHHHHHhcccC
Confidence            6 233  335777888887777

>PLN02214 cinnamoyl-CoA reductase

Probab=95.74  E-value=0.12  Score=43.67  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++.+|.|.|++|.+|+.+++.+. ..+.++++...+
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~-~~G~~V~~~~r~   43 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILL-ERGYTVKGTVRN   43 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCcCEEEEEeCC
Confidence            34689999999999999999987 458898877653

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=95.74  E-value=0.043  Score=46.90  Aligned_cols=92  Identities=22%  Similarity=0.311  Sum_probs=57.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC---CCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM---EQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~---~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++|.|.|+.|.+|+-.+.+|.+ .|.+++ |+|+-..|.... +...   ....++.=..-+++++++    .++|+||.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~~-v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKIA-LLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHHH-hhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence            5799999999999999999984 889877 778533332211 1100   001111111235667774    79999999


Q ss_pred             ccC----ch--------------hHHHHHHHHHHcCCcEE
Q 031341          113 FTD----AS--------------TVYDNVKQATAFGMRSV  134 (161)
Q Consensus       113 fT~----p~--------------~~~~~~~~al~~g~~vV  134 (161)
                      |+-    ++              .....++.+.++|+.-+
T Consensus        74 FAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~  113 (329)
T COG1087          74 FAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKF  113 (329)
T ss_pred             CccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEE
Confidence            972    22              23455677888886544

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.73  E-value=0.015  Score=43.65  Aligned_cols=72  Identities=21%  Similarity=0.224  Sum_probs=44.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      +||+|+|++|..|+.++-.+...+-..=+..+|...   .|  .|+....... ...+.+..+..+.+      .++|+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~~~~~------~~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPL-PSPVRITSGDYEAL------KDADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGS-TEEEEEEESSGGGG------TTESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhc-cccccccccccccc------ccccEE
Confidence            699999988999999999988665444355888541   11  2222222111 22344444444445      379999


Q ss_pred             EEcc
Q 031341          111 IDFT  114 (161)
Q Consensus       111 IDfT  114 (161)
                      |-..
T Consensus        74 vita   77 (141)
T PF00056_consen   74 VITA   77 (141)
T ss_dssp             EETT
T ss_pred             EEec
Confidence            8544

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.71  E-value=0.2  Score=40.43  Aligned_cols=94  Identities=23%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee----CCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~----~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +++.|+|+ |++|+.+++.|. ..+.+++.+-+..   ....++..  ...+..++    ++.+ +|.+.. =.++|++|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~-~~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~-~L~~ag-i~~aD~vv   71 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELS-EEGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDED-VLEEAG-IDDADAVV   71 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHH-hCCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHH-HHHhcC-CCcCCEEE
Confidence            58999995 999999999987 6678877665532   12222111  01232222    2322 222100 14788888


Q ss_pred             EccCchhHH-HHHHHHHH-cCCcEEEeCC
Q 031341          112 DFTDASTVY-DNVKQATA-FGMRSVVYVP  138 (161)
Q Consensus       112 DfT~p~~~~-~~~~~al~-~g~~vVigtt  138 (161)
                      =.|.-+... -....+++ .|+|-++.+.
T Consensus        72 a~t~~d~~N~i~~~la~~~~gv~~viar~  100 (225)
T COG0569          72 AATGNDEVNSVLALLALKEFGVPRVIARA  100 (225)
T ss_pred             EeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence            555443333 23344444 7888887664

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.71  E-value=0.12  Score=45.02  Aligned_cols=87  Identities=20%  Similarity=0.144  Sum_probs=50.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|.|+|+ |++|+.+++.+. ..|.++++ .|.... .....+.+   .+.|+.++  .+..+.+.     ..+|+||--
T Consensus         7 ~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l---~~~g~~~~~~~~~~~~~~-----~~~d~vV~s   75 (447)
T PRK02472          7 KVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQEL---LEEGIKVICGSHPLELLD-----EDFDLMVKN   75 (447)
T ss_pred             EEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHH---HhcCCEEEeCCCCHHHhc-----CcCCEEEEC
Confidence            6899995 889999988776 77888665 464321 11111111   13355443  33444443     248988733


Q ss_pred             c-CchhHHHHHHHHHHcCCcEEE
Q 031341          114 T-DASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       114 T-~p~~~~~~~~~al~~g~~vVi  135 (161)
                      . .|.. .+.+..|.++|++++.
T Consensus        76 ~gi~~~-~~~~~~a~~~~i~v~~   97 (447)
T PRK02472         76 PGIPYT-NPMVEKALEKGIPIIT   97 (447)
T ss_pred             CCCCCC-CHHHHHHHHCCCcEEe
Confidence            2 1332 3567777888888763

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.68  E-value=0.061  Score=47.56  Aligned_cols=87  Identities=9%  Similarity=0.122  Sum_probs=53.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      --+|+|+| +|.+|+.+++.+. .-|++++ ++|.+..  +.. .+   ...|..++ ++++++.      .+|+||++|
T Consensus       202 GktVvViG-~G~IG~~va~~ak-~~Ga~Vi-V~d~d~~--R~~-~A---~~~G~~~~-~~~e~v~------~aDVVI~at  265 (413)
T cd00401         202 GKVAVVAG-YGDVGKGCAQSLR-GQGARVI-VTEVDPI--CAL-QA---AMEGYEVM-TMEEAVK------EGDIFVTTT  265 (413)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEECChh--hHH-HH---HhcCCEEc-cHHHHHc------CCCEEEECC
Confidence            35899999 5999999999776 6677755 4775321  111 11   12344332 4566664      689999998


Q ss_pred             CchhHHH-HHHHHHHcCCcEE-EeC
Q 031341          115 DASTVYD-NVKQATAFGMRSV-VYV  137 (161)
Q Consensus       115 ~p~~~~~-~~~~al~~g~~vV-igt  137 (161)
                      ....... -...+++.|.-++ +|.
T Consensus       266 G~~~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         266 GNKDIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence            5444443 3355667776554 443

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.65  E-value=0.034  Score=46.74  Aligned_cols=84  Identities=13%  Similarity=0.173  Sum_probs=47.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .-||+|+| .|++|+.+++.+... +.++. ++++...  ......    +.+...  ++++.+.+.      +.|+||+
T Consensus       152 g~kvlViG-~G~iG~~~a~~L~~~-Ga~V~-v~~r~~~--~~~~~~----~~G~~~~~~~~l~~~l~------~aDiVI~  216 (296)
T PRK08306        152 GSNVLVLG-FGRTGMTLARTLKAL-GANVT-VGARKSA--HLARIT----EMGLSPFHLSELAEEVG------KIDIIFN  216 (296)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHHC-CCEEE-EEECCHH--HHHHHH----HcCCeeecHHHHHHHhC------CCCEEEE
Confidence            46999999 599999999998754 67655 4564321  111110    223222  245666664      6899997


Q ss_pred             ccCchhHHHHHHHHHHcCCcE
Q 031341          113 FTDASTVYDNVKQATAFGMRS  133 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~v  133 (161)
                      .+++....+.....++.+--+
T Consensus       217 t~p~~~i~~~~l~~~~~g~vI  237 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALI  237 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEE
Confidence            654433333333334444333

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=95.63  E-value=0.096  Score=42.59  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      ||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~   29 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL   29 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence            689999999999999999974 57787654

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=95.63  E-value=0.1  Score=46.56  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=27.4

Q ss_pred             EEeeCCCCC---------CCeeEEEEcCCCHHHHHHHHHHHhc
Q 031341           25 ISCSTNPPQ---------SNIKVIINGAVKEIGRAAVIAVTKA   58 (161)
Q Consensus        25 ~~~~~~~~~---------~~ikV~ViGa~G~mGr~i~~~l~~~   58 (161)
                      +||+++.-.         .++||+|+|++|.+|..++-.+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112         81 VFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             EEEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhc
Confidence            788776433         4699999997799999999988744

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=95.63  E-value=0.11  Score=42.23  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~-~~eLvav   66 (161)
                      ||.|.|++|.+|+.+++.+.+.. +.+++++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~   31 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL   31 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence            68999999999999999998664 4787754

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.63  E-value=0.13  Score=45.96  Aligned_cols=112  Identities=12%  Similarity=0.111  Sum_probs=72.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcCC-----------CCC-CeeeeCCHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-----------QPL-EIPVMSDLT   95 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~---~g~~-----------~~~-~i~v~~dl~   95 (161)
                      .||+|-| +|++|+..++.+. ..|.+|+++.|+.     ..|.+..++   ....           ..+ +.... +-+
T Consensus       229 ~~vaIQG-fGnVG~~aA~~L~-e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~  305 (445)
T PRK14030        229 KTVAISG-FGNVAWGAATKAT-ELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGK  305 (445)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCc
Confidence            6999999 6999999999886 5799999998842     345554431   1000           011 22222 345


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC-C-CCHHHHHHHHHHhhhcCeee
Q 031341           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt-g-~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +++.     .++||++=+...+.. .+++....+++..+|+|-. + .+++..+.|    ++.+|++
T Consensus       306 ~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL----~~rGI~~  363 (445)
T PRK14030        306 KPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKF----IAAKQLF  363 (445)
T ss_pred             ccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH----HHCCCEE
Confidence            5665     589999976655444 5788888899999999865 3 344444333    3445554

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.62  E-value=0.14  Score=43.44  Aligned_cols=57  Identities=18%  Similarity=0.010  Sum_probs=40.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|+|+| +|++|+.+++.+. .=|+++.+ +++..  ..  +        .. -+.++++++.      ..|+|+...
T Consensus       149 ktvgIiG-~G~IG~~vA~~l~-~fgm~V~~-~~~~~--~~--~--------~~-~~~~l~ell~------~sDiv~l~l  205 (317)
T PRK06487        149 KTLGLLG-HGELGGAVARLAE-AFGMRVLI-GQLPG--RP--A--------RP-DRLPLDELLP------QVDALTLHC  205 (317)
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCC--Cc--c--------cc-cccCHHHHHH------hCCEEEECC
Confidence            5899999 7999999999886 45888775 45431  11  0        01 1348999996      689999555

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.61  E-value=0.14  Score=45.78  Aligned_cols=105  Identities=14%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhh--------------cCCCCCCeeeeCCHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC--------------DMEQPLEIPVMSDLTM   96 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~--------------g~~~~~~i~v~~dl~~   96 (161)
                      .||+|.| .|++|+..++.|. ..|.+++++.|++     ..|-+..++.              +.....+... .+.++
T Consensus       229 ~rVaVQG-fGNVG~~aA~~L~-e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~-i~~d~  305 (444)
T PRK14031        229 KVCLVSG-SGNVAQYTAEKVL-ELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY-VEGAR  305 (444)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE-cCCcc
Confidence            6999999 6999999999887 6799999999942     2344443221              0000112222 24455


Q ss_pred             HHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC-C-CCHHHHHHH
Q 031341           97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSAL  148 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt-g-~~~e~~~~L  148 (161)
                      .+.     .++|+++=+...+.. .+++......|+.+|++-. + .+++..+.|
T Consensus       306 ~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L  355 (444)
T PRK14031        306 PWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVF  355 (444)
T ss_pred             ccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHH
Confidence            654     478998855544433 5777777778888888754 2 344444433

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.60  E-value=0.046  Score=47.81  Aligned_cols=59  Identities=22%  Similarity=0.231  Sum_probs=41.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|||+| +|+||+.+++.+. .=|+++.+ +|+.....  .       . . ..+.++++++.      .+|+|+-.+
T Consensus       117 ktvGIIG-~G~IG~~vA~~l~-a~G~~V~~-~dp~~~~~--~-------~-~-~~~~~L~ell~------~sDiI~lh~  175 (378)
T PRK15438        117 RTVGIVG-VGNVGRRLQARLE-ALGIKTLL-CDPPRADR--G-------D-E-GDFRSLDELVQ------EADILTFHT  175 (378)
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCccccc--c-------c-c-cccCCHHHHHh------hCCEEEEeC
Confidence            6899999 6999999999987 56899874 56432100  0       0 1 12568999986      689988544

>PRK06182 short chain dehydrogenase; Validated

Probab=95.58  E-value=0.23  Score=39.97  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -++.|.|++|++|+.+++.+. ..+.+++++..
T Consensus         4 k~vlItGasggiG~~la~~l~-~~G~~V~~~~r   35 (273)
T PRK06182          4 KVALVTGASSGIGKATARRLA-AQGYTVYGAAR   35 (273)
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence            479999999999999999987 46888876554

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=95.57  E-value=0.1  Score=43.26  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=26.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   31 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVILD   31 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHH-CCCeEEEEe
Confidence            5899999999999999999974 588888753

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=95.56  E-value=0.12  Score=46.07  Aligned_cols=83  Identities=16%  Similarity=0.120  Sum_probs=56.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH---HHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~---~~l~~~~~~~~~DVV  110 (161)
                      -||.|+|+ |..|+.+++.+.+++  +++++|.+|.+..+           ..++|++.+.+   +.+.+    .++|-|
T Consensus       144 rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~-----------g~~VpvlG~~~dL~~~v~~----~~IdeV  207 (463)
T PRK10124        144 RMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPG-----------GVSNDWAGNLQQLVEDAKA----GKIHNV  207 (463)
T ss_pred             CcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccc-----------cCCCCcCCCHHHHHHHHHh----CCCCEE
Confidence            57999995 999999999998776  68999999953210           12334455544   44443    678977


Q ss_pred             EEccCchh----HHHHHHHHHHcCCcEEE
Q 031341          111 IDFTDAST----VYDNVKQATAFGMRSVV  135 (161)
Q Consensus       111 IDfT~p~~----~~~~~~~al~~g~~vVi  135 (161)
                      + .+.|..    ..+.+..+.+.++++.+
T Consensus       208 i-IAip~~~~~~l~ell~~~~~~~v~V~i  235 (463)
T PRK10124        208 Y-IAMSMCDGARVKKLVRQLADTTCSVLL  235 (463)
T ss_pred             E-EeCCCcchHHHHHHHHHHHHcCCeEEE
Confidence            7 444432    23556688888998764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.55  E-value=0.12  Score=45.16  Aligned_cols=85  Identities=20%  Similarity=0.202  Sum_probs=51.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch----hhhhcCCCCCCeee-eCC-HHHHHhcccccCCccE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----GMVCDMEQPLEIPV-MSD-LTMVLGSISQSKARAV  109 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~----~~~~g~~~~~~i~v-~~d-l~~~l~~~~~~~~~DV  109 (161)
                      -+|.|+|+ |++|..+++.+. ..|.++. ++|+... ...    .++.    +.++.+ +.+ .++..      .++|+
T Consensus         6 k~v~iiG~-g~~G~~~A~~l~-~~G~~V~-~~d~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~~d~   71 (450)
T PRK14106          6 KKVLVVGA-GVSGLALAKFLK-KLGAKVI-LTDEKEE-DQLKEALEELG----ELGIELVLGEYPEEFL------EGVDL   71 (450)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeCCch-HHHHHHHHHHH----hcCCEEEeCCcchhHh------hcCCE
Confidence            57999995 889999999887 7788866 4564321 111    1211    234433 233 23333      36999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEE
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vV  134 (161)
                      ||-.+......+.+..|.++|++++
T Consensus        72 vv~~~g~~~~~~~~~~a~~~~i~~~   96 (450)
T PRK14106         72 VVVSPGVPLDSPPVVQAHKKGIEVI   96 (450)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEE
Confidence            8866643334456666667777664

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=95.54  E-value=0.13  Score=45.16  Aligned_cols=89  Identities=19%  Similarity=0.261  Sum_probs=59.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -|+.|+| +|..|..+++.+.+++  +++++|.+|.+...  ...      -.++|+..+.+++.+ +.++.++|.|+-+
T Consensus       126 ~rvLIvG-ag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------i~g~pVlg~~~~l~~-~i~~~~id~ViIa  195 (445)
T TIGR03025       126 RRVLIVG-TGEAARELAAALSRNPDLGYRVVGFVDDRPSD--RVE------VAGLPVLGKLDDLVE-LVRAHRVDEVIIA  195 (445)
T ss_pred             CcEEEEE-CCHHHHHHHHHHhhCccCCeEEEEEEeCCccc--ccc------cCCCcccCCHHHHHH-HHHhCCCCEEEEe
Confidence            5799999 5999999999998655  68999999853211  111      246777766554321 1113678977734


Q ss_pred             cCchh----HHHHHHHHHHcCCcEEE
Q 031341          114 TDAST----VYDNVKQATAFGMRSVV  135 (161)
Q Consensus       114 T~p~~----~~~~~~~al~~g~~vVi  135 (161)
                       .|..    ..+.+..+.++|+.+.+
T Consensus       196 -~p~~~~~~~~~ll~~~~~~gv~V~~  220 (445)
T TIGR03025       196 -LPLSEEARILELLLQLRDLGVDVRL  220 (445)
T ss_pred             -cCcccHHHHHHHHHHHHhcCCEEEE
Confidence             3432    24567888899988764

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.53  E-value=0.09  Score=45.99  Aligned_cols=59  Identities=17%  Similarity=0.098  Sum_probs=41.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|||+| .|+||+.+++.+. .-|+++. ++|+.....          . +..-+.++++++.      .+|+|+-..
T Consensus       117 ktvGIIG-~G~IG~~va~~l~-a~G~~V~-~~Dp~~~~~----------~-~~~~~~~l~ell~------~aDiV~lh~  175 (381)
T PRK00257        117 RTYGVVG-AGHVGGRLVRVLR-GLGWKVL-VCDPPRQEA----------E-GDGDFVSLERILE------ECDVISLHT  175 (381)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EECCccccc----------c-cCccccCHHHHHh------hCCEEEEeC
Confidence            5899999 6999999999887 5689876 456532110          0 1112468999986      699988444

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=95.53  E-value=0.15  Score=44.86  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=59.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHH---HHhcccccCCccE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~---~l~~~~~~~~~DV  109 (161)
                      .-||.|+| +|..|+.+++.+.+.+  +++++|.+|.+...  .+.      ..++|+..+.++   .+.    +.++|.
T Consensus       128 ~~rvLIiG-ag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------~~gvpVlg~~~dl~~~i~----~~~vd~  194 (451)
T TIGR03023       128 LRRVLIVG-AGELGRRLAERLARNPELGYRVVGFFDDRPDA--RTG------VRGVPVLGKLDDLEELIR----EGEVDE  194 (451)
T ss_pred             CCcEEEEe-CCHHHHHHHHHHHhCccCCcEEEEEEeCCCcc--ccc------cCCCCccCCHHHHHHHHH----hcCCCE
Confidence            35799999 5999999999998754  68999999953211  111      246677655554   444    368998


Q ss_pred             EEEccCc---hhHHHHHHHHHHcCCcEEE
Q 031341          110 VIDFTDA---STVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       110 VIDfT~p---~~~~~~~~~al~~g~~vVi  135 (161)
                      |+.+.+.   +...+.+..+.+.|+.+.+
T Consensus       195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~v  223 (451)
T TIGR03023       195 VYIALPLAAEDRILELLDALEDLTVDVRL  223 (451)
T ss_pred             EEEeeCcccHHHHHHHHHHHHhcCCEEEE
Confidence            7744432   2234567788888988765

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.52  E-value=0.07  Score=44.29  Aligned_cols=93  Identities=20%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhhh-----hcCCCCCCee-----
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGMV-----CDMEQPLEIP-----   89 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~----------------~~g~~~~~~-----~g~~~~~~i~-----   89 (161)
                      -+|.|+|+ |+.|+-.+++|. ..|+.=.-++|-+                ..|++..+.     ..+.-...+.     
T Consensus        31 ~~V~VvGi-GGVGSw~veALa-RsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          31 AHVCVVGI-GGVGSWAVEALA-RSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             CcEEEEec-CchhHHHHHHHH-HcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            47999996 999999999987 5566555577721                122221111     1111011222     


Q ss_pred             e-eCCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEE
Q 031341           90 V-MSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus        90 v-~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVi  135 (161)
                      + .+++++.+.     .++|-|||+.. -..-.+.+.+|.++++|+|+
T Consensus       109 ~t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs  151 (263)
T COG1179         109 ITEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS  151 (263)
T ss_pred             hCHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence            1 155677776     58999999984 34446888999999999984

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=95.50  E-value=0.044  Score=47.82  Aligned_cols=73  Identities=11%  Similarity=0.104  Sum_probs=49.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .++|+|+| .|.||+-+++.+. ..|..|. ..|++.. .++.      .++|...|+++.++.+     ..+|+|+-+|
T Consensus        52 tl~IaIIG-fGnmGqflAetli-~aGh~li-~hsRsdy-ssaa------~~yg~~~ft~lhdlce-----rhpDvvLlct  116 (480)
T KOG2380|consen   52 TLVIAIIG-FGNMGQFLAETLI-DAGHGLI-CHSRSDY-SSAA------EKYGSAKFTLLHDLCE-----RHPDVVLLCT  116 (480)
T ss_pred             ceEEEEEe-cCcHHHHHHHHHH-hcCceeE-ecCcchh-HHHH------HHhcccccccHHHHHh-----cCCCEEEEEe
Confidence            48999999 6999999999987 5677655 3443221 1222      2566677888888766     4899999776


Q ss_pred             CchhHHHH
Q 031341          115 DASTVYDN  122 (161)
Q Consensus       115 ~p~~~~~~  122 (161)
                      ........
T Consensus       117 silsieki  124 (480)
T KOG2380|consen  117 SILSIEKI  124 (480)
T ss_pred             hhhhHHHH
Confidence            54444333

>PRK05693 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.16  Score=40.93  Aligned_cols=31  Identities=39%  Similarity=0.422  Sum_probs=26.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++++.
T Consensus         2 k~vlItGasggiG~~la~~l~-~~G~~V~~~~   32 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFK-AAGYEVWATA   32 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHH-HCCCEEEEEe
Confidence            468999999999999999987 5588887654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.44  E-value=0.067  Score=47.05  Aligned_cols=80  Identities=20%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -+|+|+|+ |.||+.+++.+.. .++.-+-+++++.  .+..+++.   ..+  ...++++.+.+.      .+|+||.+
T Consensus       181 ~~VlViGa-G~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l~------~aDvVi~a  247 (417)
T TIGR01035       181 KKALLIGA-GEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYLA------EADIVISS  247 (417)
T ss_pred             CEEEEECC-hHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHHh------hCCEEEEC
Confidence            58999995 9999999999876 4644445666542  12122221   111  112345666664      79999988


Q ss_pred             cC-chhH--HHHHHHHHH
Q 031341          114 TD-ASTV--YDNVKQATA  128 (161)
Q Consensus       114 T~-p~~~--~~~~~~al~  128 (161)
                      |. |...  .+.+..+..
T Consensus       248 T~s~~~ii~~e~l~~~~~  265 (417)
T TIGR01035       248 TGAPHPIVSKEDVERALR  265 (417)
T ss_pred             CCCCCceEcHHHHHHHHh
Confidence            73 3332  355655544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.43  E-value=0.04  Score=48.07  Aligned_cols=97  Identities=13%  Similarity=0.158  Sum_probs=61.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCC-cchhhhhcCCCCC----CeeeeCCHHHHHhcccccCCccE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVG-EDIGMVCDMEQPL----EIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~g-~~~~~~~g~~~~~----~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      -+++|+| +|.+++.+++.+.. .|+++=+-+.+++... ....+...  ..+    ++.+.+|.++++.      ++|+
T Consensus       156 ~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~--~~~~~~~~v~~~~s~~eav~------~ADI  226 (379)
T PRK06199        156 KVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVA--ETYPQITNVEVVDSIEEVVR------GSDI  226 (379)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH--HhcCCCceEEEeCCHHHHHc------CCCE
Confidence            5799999 59999999999887 4678888899975311 11111111  111    3666799999985      7999


Q ss_pred             EEEccCchh----HHHHH-HHHHHcCCcEE-EeCCCCC
Q 031341          110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYVPHIQ  141 (161)
Q Consensus       110 VIDfT~p~~----~~~~~-~~al~~g~~vV-igttg~~  141 (161)
                      |+=+|+...    ..+.+ ...++.|.||. +|...++
T Consensus       227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~eld  264 (379)
T PRK06199        227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRID  264 (379)
T ss_pred             EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccCC
Confidence            995453111    11333 33567888876 5554444

>PLN02650 dihydroflavonol-4-reductase

Probab=95.41  E-value=0.07  Score=44.88  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=28.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ...+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r   37 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR   37 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEc
Confidence            345899999999999999999984 5889887665

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.36  E-value=0.07  Score=43.87  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+|.|.|++|.+|+.+++.+. ..|.+++++..+
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~-~~g~~V~~~~r~   37 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLL-QRGYTVKATVRD   37 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHH-HCCCEEEEEEcC
Confidence            589999999999999999998 458898877653

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=95.34  E-value=0.036  Score=48.42  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=73.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhh---hcCCC----CCC-eeeeCC-----HHHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMV---CDMEQ----PLE-IPVMSD-----LTMVL   98 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~---~~~~eLvavvd~~~~g~~~~~~---~g~~~----~~~-i~v~~d-----l~~~l   98 (161)
                      ..-+.|.||+|..|+.+++.+..   .++..+. ++.++.  +++.+.   .+...    +.. +.+.+.     ++++.
T Consensus         5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn~--~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema   81 (423)
T KOG2733|consen    5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRNE--KKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMA   81 (423)
T ss_pred             eeeEEEEccccccceeeHHHHhhhhcccCceEE-EecCCH--HHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHH
Confidence            46799999999999999999885   3555543 333321  111111   11110    011 233332     45544


Q ss_pred             hcccccCCccEEEEccCchhH--HHHHHHHHHcCCcEE--EeCCCCCHHHHHHHHHHhhhcCeee
Q 031341           99 GSISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~--~~~~~~al~~g~~vV--igttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                            ..+-|++.+.-|--.  .+.+++|+++|.|-|  +|.+.|-+-...+-.+.|++++|..
T Consensus        82 ------k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYI  140 (423)
T KOG2733|consen   82 ------KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYI  140 (423)
T ss_pred             ------hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEE
Confidence                  367799988888655  478899999999876  6666554444456678888888754

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.34  E-value=0.23  Score=43.65  Aligned_cols=60  Identities=20%  Similarity=0.101  Sum_probs=41.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|||+| +|++|+.+++.+. .=|+++.+ +|+... ..         ..++....++++++.      ..|+|+...
T Consensus       152 ktvGIiG-~G~IG~~vA~~~~-~fGm~V~~-~d~~~~-~~---------~~~~~~~~~l~ell~------~sDiVslh~  211 (409)
T PRK11790        152 KTLGIVG-YGHIGTQLSVLAE-SLGMRVYF-YDIEDK-LP---------LGNARQVGSLEELLA------QSDVVSLHV  211 (409)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCCcc-cc---------cCCceecCCHHHHHh------hCCEEEEcC
Confidence            6899999 7999999999887 45888764 554211 00         112233468999996      699988544

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.32  E-value=0.084  Score=44.09  Aligned_cols=37  Identities=11%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+.++.+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         5 ~~~~~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~r   41 (338)
T PLN00198          5 TPTGKKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTVR   41 (338)
T ss_pred             cCCCCCeEEEECCchHHHHHHHHHHHH-CCCEEEEEEC
Confidence            345567899999999999999999985 5788876654

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.27  E-value=0.033  Score=47.37  Aligned_cols=93  Identities=12%  Similarity=0.041  Sum_probs=61.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .-+++|+| +|..++.+++.+.....++=+-+++++... ....+.... ....+.+.++.+++..      ++|+|+=+
T Consensus       128 ~~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-~~~~v~~~~~~~~av~------~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-LGFAVNTTLDAAEVAH------AANLIVTT  199 (315)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-cCCcEEEECCHHHHhc------CCCEEEEe
Confidence            35799999 599999999999988888888899875321 111121110 0123445789999885      89999954


Q ss_pred             cCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (161)
Q Consensus       114 T~p~~~~~~~-~~al~~g~~vV-igt  137 (161)
                      | +... +.+ ...++.|.|+. +|.
T Consensus       200 T-~s~~-P~~~~~~l~~G~hi~~iGs  223 (315)
T PRK06823        200 T-PSRE-PLLQAEDIQPGTHITAVGA  223 (315)
T ss_pred             c-CCCC-ceeCHHHcCCCcEEEecCC
Confidence            4 3322 222 23567898876 553

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.26  E-value=0.17  Score=43.10  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=26.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ||.|+|+ |..|..+++.|. ..|+.=.-++|.
T Consensus         1 kVLIvGa-GGLGs~vA~~La-~aGVg~ItlvD~   31 (307)
T cd01486           1 KCLLLGA-GTLGCNVARNLL-GWGVRHITFVDS   31 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HcCCCeEEEECC
Confidence            6999996 999999999997 667776777873

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=95.25  E-value=0.15  Score=40.99  Aligned_cols=31  Identities=39%  Similarity=0.455  Sum_probs=26.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |.|.|++|.+|+.+++.+.+ .+.++.++..+
T Consensus         1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   31 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRS   31 (292)
T ss_pred             CEEEcccchhhHHHHHHHHH-cCCEEEEEeCC
Confidence            57999999999999999985 57998887764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.24  E-value=0.13  Score=45.42  Aligned_cols=87  Identities=17%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -||.|+|+ |..|..+++.+. ..+.+++ ++|... .. ....+.+   .+.|+.++..-...+.     ..+|+||..
T Consensus        17 ~~v~viG~-G~~G~~~A~~L~-~~G~~V~-~~d~~~~~~~~~~~~~l---~~~gv~~~~~~~~~~~-----~~~D~Vv~s   85 (480)
T PRK01438         17 LRVVVAGL-GVSGFAAADALL-ELGARVT-VVDDGDDERHRALAAIL---EALGATVRLGPGPTLP-----EDTDLVVTS   85 (480)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeCCchhhhHHHHHHH---HHcCCEEEECCCcccc-----CCCCEEEEC
Confidence            47999995 999999988876 6788855 566321 11 1111111   2446666522111122     368988855


Q ss_pred             cCchhHHHHHHHHHHcCCcE
Q 031341          114 TDASTVYDNVKQATAFGMRS  133 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~v  133 (161)
                      +--....+.+..+.++|+++
T Consensus        86 ~Gi~~~~~~~~~a~~~gi~v  105 (480)
T PRK01438         86 PGWRPDAPLLAAAADAGIPV  105 (480)
T ss_pred             CCcCCCCHHHHHHHHCCCee
Confidence            42112234455566667665

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.22  E-value=0.044  Score=47.30  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~   69 (161)
                      -+|.|+||+|.||+.+++.+....+. +|+ ++++
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R  189 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR  189 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence            57999999999999999999755443 444 4454

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.20  E-value=0.33  Score=42.56  Aligned_cols=86  Identities=17%  Similarity=0.136  Sum_probs=52.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeee-CC-HHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SD-LTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~d-l~~~l~~~~~~~~~DVVI  111 (161)
                      +-||.|+| .|+.|...++.+....+ .++. +.|.... ....+.+   .. ++.++ .. -.+.+.      ++|+||
T Consensus         7 ~~~v~viG-~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~-~~~~~~l---~~-g~~~~~g~~~~~~~~------~~d~vV   73 (438)
T PRK04663          7 IKNVVVVG-LGITGLSVVKHLRKYQPQLTVK-VIDTRET-PPGQEQL---PE-DVELHSGGWNLEWLL------EADLVV   73 (438)
T ss_pred             CceEEEEe-ccHHHHHHHHHHHhcCCCCeEE-EEeCCCC-chhHHHh---hc-CCEEEeCCCChHHhc------cCCEEE
Confidence            45799999 59999999999997765 7765 6774321 1111112   12 66553 21 223343      689877


Q ss_pred             EccC--chhHHHHHHHHHHcCCcEEE
Q 031341          112 DFTD--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       112 DfT~--p~~~~~~~~~al~~g~~vVi  135 (161)
                       .|+  |. ..+.+..|.++|+|++.
T Consensus        74 -~SpgI~~-~~p~~~~a~~~gi~i~~   97 (438)
T PRK04663         74 -TNPGIAL-ATPEIQQVLAAGIPVVG   97 (438)
T ss_pred             -ECCCCCC-CCHHHHHHHHCCCcEEE
Confidence             552  33 34566777788888763

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=95.17  E-value=0.09  Score=45.36  Aligned_cols=98  Identities=16%  Similarity=0.134  Sum_probs=57.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC--HHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d--l~~~l~~~~~~~~~DVVID  112 (161)
                      ..+|.|+|++|..|...++.+. +-++..+..+.+. ...+..+.+|..   .+.=|++  +.+.+.... ..++|+|+|
T Consensus       158 g~~vLv~ggsggVG~~aiQlAk-~~~~~~v~t~~s~-e~~~l~k~lGAd---~vvdy~~~~~~e~~kk~~-~~~~DvVlD  231 (347)
T KOG1198|consen  158 GKSVLVLGGSGGVGTAAIQLAK-HAGAIKVVTACSK-EKLELVKKLGAD---EVVDYKDENVVELIKKYT-GKGVDVVLD  231 (347)
T ss_pred             CCeEEEEeCCcHHHHHHHHHHH-hcCCcEEEEEccc-chHHHHHHcCCc---EeecCCCHHHHHHHHhhc-CCCccEEEE
Confidence            3689999999999999998765 5555444444432 234444444421   2222444  333333110 246999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      |-...............|...++++.
T Consensus       232 ~vg~~~~~~~~~~l~~~g~~~~i~~~  257 (347)
T KOG1198|consen  232 CVGGSTLTKSLSCLLKGGGGAYIGLV  257 (347)
T ss_pred             CCCCCccccchhhhccCCceEEEEec
Confidence            98665555555555566655566554

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.15  E-value=0.11  Score=43.12  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=28.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++.+++
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~   38 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRD   38 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECC
Confidence            4799999999999999999885 58898887764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.15  E-value=0.21  Score=41.74  Aligned_cols=94  Identities=15%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCcch-----------hh-----hhcCCCCCCeeee---
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGEDI-----------GM-----VCDMEQPLEIPVM---   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~g~~~-----------~~-----~~g~~~~~~i~v~---   91 (161)
                      .+|.|+|+ |..|..+++.|. ..|+.=+-++|.+.     .++..           .+     +..+.....+..+   
T Consensus        31 s~VlVvG~-GGVGs~vae~La-r~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         31 AHICVVGI-GGVGSWAAEALA-RTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             CCEEEECc-CHHHHHHHHHHH-HcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            68999995 999999999998 44554455777321     11100           00     0011101112111   


Q ss_pred             ---CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEe
Q 031341           92 ---SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~g~~vVig  136 (161)
                         ++.++++.     .++|+|||+... ..-......|.++++|+|..
T Consensus       109 i~~e~~~~ll~-----~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~  152 (268)
T PRK15116        109 ITPDNVAEYMS-----AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTT  152 (268)
T ss_pred             cChhhHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence               23445553     368999998744 55567778899999998843

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.14  E-value=0.24  Score=43.11  Aligned_cols=85  Identities=20%  Similarity=0.172  Sum_probs=50.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCCCCCCeeeeCC-HHHHHhcccccCCccEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVID  112 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~---~~~g~~~~~~i~v~~d-l~~~l~~~~~~~~~DVVID  112 (161)
                      ||.|+|. |+.|..+++.+. ..|.++. +.|.... ....   .++.  ...|+.++.. -.+.+.      ++|+|| 
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~-~~G~~V~-~sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~~~~~~------~~d~vv-   67 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLH-KKGAEVT-VTDLKPN-EELEPSMGQLR--LNEGSVLHTGLHLEDLN------NADLVV-   67 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHH-HCCCEEE-EEeCCCC-ccchhHHHHHh--hccCcEEEecCchHHhc------cCCEEE-
Confidence            5899994 999998888776 7788855 6774321 1111   1110  0235655421 133342      689887 


Q ss_pred             ccC--chhHHHHHHHHHHcCCcEEE
Q 031341          113 FTD--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       113 fT~--p~~~~~~~~~al~~g~~vVi  135 (161)
                      .|+  |.. .+.+.+|.++|++++.
T Consensus        68 ~sp~i~~~-~p~~~~a~~~~i~i~~   91 (433)
T TIGR01087        68 KSPGIPPD-HPLVQAAAKRGIPVVG   91 (433)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEE
Confidence            552  433 3566777788888764

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=95.12  E-value=0.11  Score=44.41  Aligned_cols=35  Identities=17%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~------eLvavvd~   69 (161)
                      .|+||+|+|++|.+|..++-.+...+=+      || ..+|.
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el-~L~Di   42 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVL-HLLDI   42 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEE-EEEec
Confidence            4799999997799999999888755422      44 47775

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.11  E-value=0.046  Score=46.06  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +||.|.|++|.+|+.+++.+.+ .+.+++++.+
T Consensus        11 ~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r   42 (353)
T PLN02896         11 GTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLR   42 (353)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            6999999999999999999985 5889887655

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.09  E-value=0.26  Score=41.83  Aligned_cols=58  Identities=16%  Similarity=0.056  Sum_probs=41.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|+|+| +|++|+++++.+. .=|+++.+ +++... ..          ... -+.++++++.      ..|+|+...
T Consensus       148 ktvgIiG-~G~IG~~va~~l~-~fg~~V~~-~~~~~~-~~----------~~~-~~~~l~ell~------~sDiv~l~~  205 (314)
T PRK06932        148 STLGVFG-KGCLGTEVGRLAQ-ALGMKVLY-AEHKGA-SV----------CRE-GYTPFEEVLK------QADIVTLHC  205 (314)
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCcc-cc----------ccc-ccCCHHHHHH------hCCEEEEcC
Confidence            6999999 7999999999886 55888875 454211 00          011 1468999996      699998555

>PRK12320 hypothetical protein; Provisional

Probab=95.08  E-value=0.14  Score=48.13  Aligned_cols=88  Identities=16%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~-~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |||.|.|++|.+|+.+++.+. ..+.++.++........+ ..++.    ..++.- ..+.+++      .++|+||.+.
T Consensus         1 MkILVTGAaGFIGs~La~~Ll-~~G~~Vi~ldr~~~~~~~~~ve~v----~~Dl~d-~~l~~al------~~~D~VIHLA   68 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLI-AAGHTVSGIAQHPHDALDPRVDYV----CASLRN-PVLQELA------GEADAVIHLA   68 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEEEeCChhhcccCCceEE----EccCCC-HHHHHHh------cCCCEEEEcC
Confidence            589999999999999999987 457888876543211000 00000    011100 1133344      3689999887


Q ss_pred             Cch----------hHHHHHHHHHHcCCcEEE
Q 031341          115 DAS----------TVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       115 ~p~----------~~~~~~~~al~~g~~vVi  135 (161)
                      .+.          .....+..|.++|+.+|.
T Consensus        69 a~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~   99 (699)
T PRK12320         69 PVDTSAPGGVGITGLAHVANAAARAGARLLF   99 (699)
T ss_pred             ccCccchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence            422          122345677788887664

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=95.08  E-value=0.059  Score=45.13  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |||.|.|++|.+|+.+++.+.+. +.+.+..++
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~   32 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD   32 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence            58999999999999999999865 444333444

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.04  E-value=0.45  Score=33.24  Aligned_cols=92  Identities=20%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC-
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD-  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~-  115 (161)
                      +|+|+|+--.+-..+-+.+. .-|.++... .++. +..         +    -...++..+.      .+|+||-+|. 
T Consensus         1 ~vliVGG~~~~~~~~~~~~~-~~G~~~~~h-g~~~-~~~---------~----~~~~l~~~i~------~aD~VIv~t~~   58 (97)
T PF10087_consen    1 SVLIVGGREDRERRYKRILE-KYGGKLIHH-GRDG-GDE---------K----KASRLPSKIK------KADLVIVFTDY   58 (97)
T ss_pred             CEEEEcCCcccHHHHHHHHH-HcCCEEEEE-ecCC-CCc---------c----chhHHHHhcC------CCCEEEEEeCC
Confidence            58999933388887776665 577887766 3221 110         0    0012455553      7899888884 


Q ss_pred             -chhH-HHHHHHHHHcCCcEEEeC-CCCCHHHHHHHHHH
Q 031341          116 -ASTV-YDNVKQATAFGMRSVVYV-PHIQLETVSALSAF  151 (161)
Q Consensus       116 -p~~~-~~~~~~al~~g~~vVigt-tg~~~e~~~~L~~~  151 (161)
                       .+.. ...-..|.++++|++.-. ++++ .-.+.|.++
T Consensus        59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~-~l~~~l~~~   96 (97)
T PF10087_consen   59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS-SLERALERL   96 (97)
T ss_pred             cChHHHHHHHHHHHHcCCcEEEECCCCHH-HHHHHHHhh
Confidence             3333 445578889999999876 5654 233444443

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=95.03  E-value=0.16  Score=46.89  Aligned_cols=28  Identities=25%  Similarity=0.314  Sum_probs=24.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEV   63 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eL   63 (161)
                      .|||.|.|++|.+|+.+++.+.. .+.++
T Consensus       380 ~mkiLVtGa~G~iG~~l~~~L~~-~g~~v  407 (668)
T PLN02260        380 SLKFLIYGRTGWIGGLLGKLCEK-QGIAY  407 (668)
T ss_pred             CceEEEECCCchHHHHHHHHHHh-CCCeE
Confidence            48999999999999999998874 46776

>PLN02306 hydroxypyruvate reductase

Probab=95.02  E-value=0.4  Score=42.03  Aligned_cols=71  Identities=18%  Similarity=0.097  Sum_probs=42.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh--hhhcC--C----CCCCeeeeCCHHHHHhcccccCCc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG--MVCDM--E----QPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~--~~~g~--~----~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      -+|+|+| +|++|+.+++.+...=|+++. ++|+........  ...+.  .    .+.++..+.++++++.      ..
T Consensus       166 ktvGIiG-~G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------~s  237 (386)
T PLN02306        166 QTVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------EA  237 (386)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh------hC
Confidence            6899999 799999999987534488876 556432100000  00100  0    0011222468999996      69


Q ss_pred             cEEEEcc
Q 031341          108 AVVIDFT  114 (161)
Q Consensus       108 DVVIDfT  114 (161)
                      |+|+...
T Consensus       238 DiV~lh~  244 (386)
T PLN02306        238 DVISLHP  244 (386)
T ss_pred             CEEEEeC
Confidence            9988544

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=95.02  E-value=0.031  Score=43.53  Aligned_cols=73  Identities=23%  Similarity=0.195  Sum_probs=42.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |.|+|++|.+|+.+++.+. ..+.+++.+..+.............. ...++.-..++++++..    .++|+||.+..
T Consensus         1 IlI~GatG~iG~~l~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~a~   74 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLL-KKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHLAA   74 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEEBS
T ss_pred             EEEEccCCHHHHHHHHHHH-HcCCccccccccccccccccccceEEEEEeeccccccccccccc----cCceEEEEeec
Confidence            6899999999999999998 66777775555432111000000000 01111112345566653    46899999864

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.01  E-value=0.096  Score=46.06  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=47.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .+|+|+|+ |.||+.+++.+. ..+++-+.+++++.  .+..+++.   ..+  +..+.++.+.+.      .+|+||.+
T Consensus       183 ~~vlViGa-G~iG~~~a~~L~-~~G~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVI~a  249 (423)
T PRK00045        183 KKVLVIGA-GEMGELVAKHLA-EKGVRKITVANRTL--ERAEELAE---EFGGEAIPLDELPEALA------EADIVISS  249 (423)
T ss_pred             CEEEEECc-hHHHHHHHHHHH-HCCCCeEEEEeCCH--HHHHHHHH---HcCCcEeeHHHHHHHhc------cCCEEEEC
Confidence            68999995 999999999887 45664455667542  12122221   122  222345555553      79999988


Q ss_pred             cC-chhH--HHHHHHHH
Q 031341          114 TD-ASTV--YDNVKQAT  127 (161)
Q Consensus       114 T~-p~~~--~~~~~~al  127 (161)
                      |. |...  .+.+..++
T Consensus       250 T~s~~~~i~~~~l~~~~  266 (423)
T PRK00045        250 TGAPHPIIGKGMVERAL  266 (423)
T ss_pred             CCCCCcEEcHHHHHHHH
Confidence            84 3332  34555544

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=95.00  E-value=0.24  Score=43.29  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=61.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh---------------hcCCCCCCeeee---C
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV---------------CDMEQPLEIPVM---S   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g---~~~~~~---------------~g~~~~~~i~v~---~   92 (161)
                      |.|+.|.|.||.+|...++.+.+.|+ +++++.....+..   +.+.++               +... ..++.++   .
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~-~~~~~v~~G~~   79 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDL-LPGTEVLVGEE   79 (385)
T ss_pred             CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhh-ccCceEEecHH
Confidence            46899999999999999999998766 5899988742110   000000               0000 0022232   2


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      .+.++.+    ..++|+|+..-.-.....-..+++++|+.+-..+
T Consensus        80 ~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLAN  120 (385)
T COG0743          80 GLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALAN  120 (385)
T ss_pred             HHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeecc
Confidence            2334443    3678988865555555666778899999988754

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=94.97  E-value=0.17  Score=40.51  Aligned_cols=30  Identities=17%  Similarity=0.331  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      |++.|.|++|.+|+.+++.+. ..+.+++..
T Consensus         1 m~vlItGas~gIG~aia~~l~-~~G~~V~~~   30 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELL-KKGARVVIS   30 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHH-HcCCEEEEE
Confidence            589999999999999999997 467886544

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=94.97  E-value=0.092  Score=42.69  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=37.4

Q ss_pred             EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        40 ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |.|++|.+|+.+++.+.+ .+.+++.+.++..              .++.-..++++++..    .++|+||.+.
T Consensus         2 ItGa~GfiG~~l~~~L~~-~g~~v~~~~~~~~--------------~Dl~~~~~l~~~~~~----~~~d~Vih~A   57 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEA-LGFTNLVLRTHKE--------------LDLTRQADVEAFFAK----EKPTYVILAA   57 (306)
T ss_pred             cccCCCcccHHHHHHHHh-CCCcEEEeecccc--------------CCCCCHHHHHHHHhc----cCCCEEEEee
Confidence            789999999999999975 4666664443211              122223456666653    4689999885

>PRK05865 hypothetical protein; Provisional

Probab=94.95  E-value=0.13  Score=49.50  Aligned_cols=32  Identities=25%  Similarity=0.504  Sum_probs=27.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |||.|.|++|.+|+.+++.+. ..+.+++++..
T Consensus         1 MkILVTGATGfIGs~La~~Ll-~~G~~Vv~l~R   32 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLL-SQGHEVVGIAR   32 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCcCEEEEEEC
Confidence            589999999999999999987 46788887654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.95  E-value=0.05  Score=45.63  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=40.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-e-eCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V-MSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v-~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -+|+|+| +|+||+.+++.+... ++++. +++++.  .+.....    ..+.. + ++++++.+.      +.|+||..
T Consensus       152 k~v~IiG-~G~iG~avA~~L~~~-G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDiVint  216 (287)
T TIGR02853       152 SNVMVLG-FGRTGMTIARTFSAL-GARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKVA------EIDIVINT  216 (287)
T ss_pred             CEEEEEc-ChHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHhc------cCCEEEEC
Confidence            5899999 599999999999754 67765 566542  1111111    11221 1 345666664      68888854


Q ss_pred             cCchh
Q 031341          114 TDAST  118 (161)
Q Consensus       114 T~p~~  118 (161)
                      + |..
T Consensus       217 ~-P~~  220 (287)
T TIGR02853       217 I-PAL  220 (287)
T ss_pred             C-ChH
Confidence            4 544

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=94.94  E-value=0.29  Score=41.42  Aligned_cols=59  Identities=19%  Similarity=0.146  Sum_probs=41.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|||+| +|++|+.+++.+. .=|+++.+ +|+..  ...        ..++. +.++++++.      ..|+|+...
T Consensus       146 ktvGIiG-~G~IG~~vA~~~~-~fgm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh~  204 (311)
T PRK08410        146 KKWGIIG-LGTIGKRVAKIAQ-AFGAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIHA  204 (311)
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-hcCCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence            6899999 7999999999886 45788764 56531  110        11222 458999996      689988554

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=94.93  E-value=0.16  Score=47.36  Aligned_cols=98  Identities=13%  Similarity=0.204  Sum_probs=59.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------C---Ccchhhhh-----cCCCCCC---
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------V---GEDIGMVC-----DMEQPLE---   87 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~---g~~~~~~~-----g~~~~~~---   87 (161)
                      ..||.|+|| |..|..+++.|. .-|+.=..++|...                .   |+...+.+     .+.....   
T Consensus       338 ~~kVLIvGa-GGLGs~VA~~La-~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~  415 (664)
T TIGR01381       338 QLKVLLLGA-GTLGCNVARCLI-GWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATG  415 (664)
T ss_pred             cCeEEEECC-cHHHHHHHHHHH-HcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEE
Confidence            479999996 999999999987 56776666788320                0   22211111     0000001   


Q ss_pred             ----ee-----eeC-----------CHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCC
Q 031341           88 ----IP-----VMS-----------DLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHI  140 (161)
Q Consensus        88 ----i~-----v~~-----------dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~g~~vVigttg~  140 (161)
                          +|     +..           ++++++.      ..|+|+|++.. ++-+-.-..|.++++++|.+.-||
T Consensus       416 ~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGf  483 (664)
T TIGR01381       416 HRLTVPMPGHPIDEKDVPELEKDIARLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGF  483 (664)
T ss_pred             eeeeeccccccCCchhhhhccccHHHHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEecc
Confidence                10     111           2345554      78999999954 443455578899999999775454

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PLN00203 glutamyl-tRNA reductase

Probab=94.92  E-value=0.088  Score=47.85  Aligned_cols=83  Identities=16%  Similarity=0.252  Sum_probs=48.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .-||+|+|+ |.||+.+++.+.. .+++-+-+++++.  .+...+........+  ..++++.+++.      ++|+||-
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al~------~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACAA------EADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHHh------cCCEEEE
Confidence            468999995 9999999999875 5665455667543  222222210000112  22356666664      7999997


Q ss_pred             cc---CchhHHHHHHHHH
Q 031341          113 FT---DASTVYDNVKQAT  127 (161)
Q Consensus       113 fT---~p~~~~~~~~~al  127 (161)
                      +|   .|-...++++.+.
T Consensus       336 AT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        336 STSSETPLFLKEHVEALP  353 (519)
T ss_pred             ccCCCCCeeCHHHHHHhh
Confidence            76   2333356666554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.90  E-value=0.47  Score=41.97  Aligned_cols=70  Identities=16%  Similarity=0.181  Sum_probs=45.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCC------cchhhhhcCCCCCC-eeeeCCHHHHHhcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVG------EDIGMVCDMEQPLE-IPVMSDLTMVLGSI  101 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------~~g------~~~~~~~g~~~~~~-i~v~~dl~~~l~~~  101 (161)
                      |||.|+| +|+.|-.....+. .-|.+++++ |..       ..|      .-+.+++-.....| ...++|+++++.  
T Consensus         1 MkI~viG-tGYVGLv~g~~lA-~~GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~--   75 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLA-ELGHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK--   75 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHH-HcCCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence            7999999 7999999888776 557887754 421       011      11333332111122 677889998885  


Q ss_pred             cccCCccEEEEcc
Q 031341          102 SQSKARAVVIDFT  114 (161)
Q Consensus       102 ~~~~~~DVVIDfT  114 (161)
                          ..|+++.++
T Consensus        76 ----~adv~fIav   84 (414)
T COG1004          76 ----DADVVFIAV   84 (414)
T ss_pred             ----cCCEEEEEc
Confidence                789988776

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.89  E-value=0.054  Score=47.79  Aligned_cols=70  Identities=14%  Similarity=0.134  Sum_probs=43.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -||.|+| +|.||+.+++.+.. .+..-+-+++++.  .+...+........+.-++++.+.+.      .+|+||.+|.
T Consensus       182 kkvlviG-aG~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La~~~~~~~~~~~~~l~~~l~------~aDiVI~aT~  251 (414)
T PRK13940        182 KNVLIIG-AGQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKITSAFRNASAHYLSELPQLIK------KADIIIAAVN  251 (414)
T ss_pred             CEEEEEc-CcHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHHHhcCCeEecHHHHHHHhc------cCCEEEECcC
Confidence            5899999 59999999999974 5655556777653  12222221000011222456666664      7999997773

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.85  E-value=0.14  Score=43.63  Aligned_cols=36  Identities=14%  Similarity=0.343  Sum_probs=26.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcE-----EEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGME-----VAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e-----Lvavvd~   69 (161)
                      +|.||+|+|++|++|..++-.+....=+.     =+..+|.
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            36899999977999999998877433332     2457785

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=94.84  E-value=0.065  Score=45.53  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=49.5

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCCCeeee---CCHHHHHhcccccCC
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKA  106 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-~g~~~~~~~g~~~~~~i~v~---~dl~~~l~~~~~~~~  106 (161)
                      ..++..||+|.||.|++|+-+.-.+...|.+.-.+.+|... .|.. .++.-+.....+.=|   +.+++++.      +
T Consensus        24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVa-aDlSHI~T~s~V~g~~g~~~L~~al~------~   96 (345)
T KOG1494|consen   24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVA-ADLSHINTNSSVVGFTGADGLENALK------G   96 (345)
T ss_pred             cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCccc-ccccccCCCCceeccCChhHHHHHhc------C
Confidence            34567999999999999999998888889999999999422 2211 122212111112112   46777774      8


Q ss_pred             ccEEEEc
Q 031341          107 RAVVIDF  113 (161)
Q Consensus       107 ~DVVIDf  113 (161)
                      .|+||.-
T Consensus        97 advVvIP  103 (345)
T KOG1494|consen   97 ADVVVIP  103 (345)
T ss_pred             CCEEEec
Confidence            9977753

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=94.84  E-value=0.17  Score=41.88  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=27.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|.|.|++|.+|+.+++.+. ..+.++++...
T Consensus         6 k~vlVtG~~G~IG~~l~~~L~-~~G~~V~~~~r   37 (325)
T PLN02989          6 KVVCVTGASGYIASWIVKLLL-FRGYTINATVR   37 (325)
T ss_pred             CEEEEECCchHHHHHHHHHHH-HCCCEEEEEEc
Confidence            589999999999999999997 45888876543

>PLN00106 malate dehydrogenase

Probab=94.83  E-value=0.23  Score=42.47  Aligned_cols=45  Identities=18%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             EeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        26 ~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -|-..-...+.||+|+|++|++|+.++-.+...+-..=.-.+|..
T Consensus         9 ~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~   53 (323)
T PLN00106          9 ACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIA   53 (323)
T ss_pred             ccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            355555566679999998899999999988855555445577743

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.83  E-value=0.36  Score=42.33  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=50.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeeeC--CHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~-~~i~v~~--dl~~~l~~~~~~~~~DVVID  112 (161)
                      =-|+|+|. |+.|..+++.+. ..|.++. +.|.........++.   .. .|+.++.  .-.+.+.      ++|+|| 
T Consensus         7 ~~~~v~G~-G~sG~s~a~~L~-~~G~~v~-~~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~------~~d~vV-   73 (448)
T PRK03803          7 GLHIVVGL-GKTGLSVVRFLA-RQGIPFA-VMDSREQPPGLDTLA---REFPDVELRCGGFDCELLV------QASEII-   73 (448)
T ss_pred             CeEEEEee-cHhHHHHHHHHH-hCCCeEE-EEeCCCCchhHHHHH---hhcCCcEEEeCCCChHHhc------CCCEEE-
Confidence            35899995 999999777665 6788754 677432111111121   11 3666642  1223343      689887 


Q ss_pred             ccC--chhHHHHHHHHHHcCCcEEE
Q 031341          113 FTD--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       113 fT~--p~~~~~~~~~al~~g~~vVi  135 (161)
                      .|+  |.. .+.+..|.++|++++.
T Consensus        74 ~sp~i~~~-~p~~~~a~~~~i~i~~   97 (448)
T PRK03803         74 ISPGLALD-TPALRAAAAMGIEVIG   97 (448)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEE
Confidence            553  332 4566777788888764

>PRK08177 short chain dehydrogenase; Provisional

Probab=94.82  E-value=0.23  Score=38.89  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         2 k~vlItG~sg~iG~~la~~l~~-~G~~V~~~~r   33 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLE-RGWQVTATVR   33 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHh-CCCEEEEEeC
Confidence            4699999999999999999984 5888776554

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=94.81  E-value=0.071  Score=45.48  Aligned_cols=80  Identities=23%  Similarity=0.337  Sum_probs=49.1

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEcc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDfT  114 (161)
                      .+|.|++.++||+.++.+. ..|+.++ .+.|+..  ++...           -.++++.       .++.   +++|||
T Consensus        52 AVVTGaTDGIGKayA~eLA-krG~nvv-LIsRt~~--KL~~v-----------~kEI~~~-------~~vev~~i~~Dft  109 (312)
T KOG1014|consen   52 AVVTGATDGIGKAYARELA-KRGFNVV-LISRTQE--KLEAV-----------AKEIEEK-------YKVEVRIIAIDFT  109 (312)
T ss_pred             EEEECCCCcchHHHHHHHH-HcCCEEE-EEeCCHH--HHHHH-----------HHHHHHH-------hCcEEEEEEEecC
Confidence            5678999999999999998 5899955 6665431  11110           0122221       2222   578899


Q ss_pred             CchhHHHHHHHHHHc-CCcEEEeCCC
Q 031341          115 DASTVYDNVKQATAF-GMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~~~~~~~al~~-g~~vVigttg  139 (161)
                      .++..++.++..++. .+-+++=..|
T Consensus       110 ~~~~~ye~i~~~l~~~~VgILVNNvG  135 (312)
T KOG1014|consen  110 KGDEVYEKLLEKLAGLDVGILVNNVG  135 (312)
T ss_pred             CCchhHHHHHHHhcCCceEEEEeccc
Confidence            888877776655543 3566654444

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.28  Score=39.80  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+. ..|.+++.+..
T Consensus         5 k~vlItGasggiG~~la~~l~-~~G~~Vi~~~r   36 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQ-SDGWRVFATCR   36 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEEC
Confidence            369999999999999999987 56888776543

>PRK05884 short chain dehydrogenase; Provisional

Probab=94.79  E-value=0.34  Score=38.19  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=26.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ||+.|.|++|++|+.+++.+. ..+.+++.+..
T Consensus         1 m~vlItGas~giG~~ia~~l~-~~g~~v~~~~r   32 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFR-NDGHKVTLVGA   32 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHH-HCCCEEEEEeC
Confidence            489999999999999999997 56788776543

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=94.77  E-value=0.25  Score=46.33  Aligned_cols=34  Identities=24%  Similarity=0.186  Sum_probs=27.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ..-||+|+|+ |.||+.|+..+....|++++ ++|.
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~-l~d~  336 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGIPVR-IKDI  336 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCCeEE-EEeC
Confidence            4468999995 99999999877656788865 6774

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=94.73  E-value=0.26  Score=45.43  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=28.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavv   67 (161)
                      .++||.|.|++|.+|+.+++.|.+. ++.+++++.
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d   39 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLD   39 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence            4579999999999999999999865 578887654

>PLN02240 UDP-glucose 4-epimerase

Probab=94.71  E-value=0.31  Score=40.62  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         6 ~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~   36 (352)
T PLN02240          6 RTILVTGGAGYIGSHTVLQLLL-AGYKVVVID   36 (352)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            5899999999999999999975 578887764

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=94.69  E-value=0.073  Score=46.37  Aligned_cols=96  Identities=23%  Similarity=0.273  Sum_probs=62.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhhhh-cCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGMVC-DMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~----~~~~~-g~~~~~~i~v~--   91 (161)
                      .-.|.|+|| |+.|.-.+..+. ..|+-=.|++|.+.                .|+.    +..++ .......+..|  
T Consensus        66 ~s~VLVVGa-GGLGcPa~~YLa-aaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~  143 (427)
T KOG2017|consen   66 NSSVLVVGA-GGLGCPAAQYLA-AAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNE  143 (427)
T ss_pred             CccEEEEcc-CCCCCHHHHHHH-HcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechh
Confidence            368999996 999999998876 77888888888431                1111    11111 11111122222  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCC
Q 031341           92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                          ++..+++.      ..|||.|+| ++.+-+=.-..|..-|+|+|+|..
T Consensus       144 ~L~~sNa~~Ii~------~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa  189 (427)
T KOG2017|consen  144 FLSSSNAFDIIK------QYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA  189 (427)
T ss_pred             hccchhHHHHhh------ccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence                44556664      799999999 455555556789999999999864

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.66  E-value=0.17  Score=44.80  Aligned_cols=35  Identities=26%  Similarity=0.449  Sum_probs=29.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++..|.|+|++|+.|+.+++.+. ..++.+-+++..
T Consensus        78 ~~~~VlVvGatG~vG~~iv~~ll-krgf~vra~VRd  112 (411)
T KOG1203|consen   78 KPTTVLVVGATGKVGRRIVKILL-KRGFSVRALVRD  112 (411)
T ss_pred             CCCeEEEecCCCchhHHHHHHHH-HCCCeeeeeccC
Confidence            46899999999999999999987 556887777764

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.15  Score=44.14  Aligned_cols=93  Identities=16%  Similarity=0.219  Sum_probs=60.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc--------hhhhhcCCCCCCe--ee
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED--------IGMVCDMEQPLEI--PV   90 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~--------~~~~~g~~~~~~i--~v   90 (161)
                      =|.|+|| |..|+-++.++. ..|++=.-++|.+.                .|.+        ..+++.+- +.+.  ..
T Consensus        76 yVVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~-eIdar~~l  152 (430)
T KOG2018|consen   76 YVVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWC-EIDARNML  152 (430)
T ss_pred             EEEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccc-eecHHHhh
Confidence            3899996 999999999887 66888888888321                1111        11111110 1110  11


Q ss_pred             --eCCHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeC
Q 031341           91 --MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        91 --~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVigt  137 (161)
                        .++-++++.     .+||-|+|+- +-+.-.+.+.+|-++|++|+.-|
T Consensus       153 ~~~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~  197 (430)
T KOG2018|consen  153 WTSSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST  197 (430)
T ss_pred             cCCCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc
Confidence              144556665     5899999987 45566799999999999998643

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.58  E-value=0.2  Score=42.56  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      =+|.|.|++|..|...++.+. .-+...++++.++.. .+...-+|..   -+.-|.  |+.+.+.++.....+|+|+|.
T Consensus       144 ~~VLV~gaaGgVG~~aiQlAk-~~G~~~v~~~~s~~k-~~~~~~lGAd---~vi~y~~~~~~~~v~~~t~g~gvDvv~D~  218 (326)
T COG0604         144 ETVLVHGAAGGVGSAAIQLAK-ALGATVVAVVSSSEK-LELLKELGAD---HVINYREEDFVEQVRELTGGKGVDVVLDT  218 (326)
T ss_pred             CEEEEecCCchHHHHHHHHHH-HcCCcEEEEecCHHH-HHHHHhcCCC---EEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence            469999999999999888765 555466666664321 1111112210   011122  244444332223469999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg  139 (161)
                      ...+...+.+......|.-+.+|.++
T Consensus       219 vG~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         219 VGGDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             CCHHHHHHHHHHhccCCEEEEEecCC
Confidence            88888877666666667776777754

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.56  E-value=0.34  Score=42.71  Aligned_cols=84  Identities=14%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             eeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .||.|+|. |+.|.. +++.+. ..|.++. +.|.... ....++    .+.|+.++. ...+.+.      ++|+|| .
T Consensus         8 ~~v~viG~-G~sG~s~~a~~L~-~~G~~V~-~~D~~~~-~~~~~l----~~~gi~~~~~~~~~~~~------~~d~vv-~   72 (461)
T PRK00421          8 KRIHFVGI-GGIGMSGLAEVLL-NLGYKVS-GSDLKES-AVTQRL----LELGAIIFIGHDAENIK------DADVVV-Y   72 (461)
T ss_pred             CEEEEEEE-chhhHHHHHHHHH-hCCCeEE-EECCCCC-hHHHHH----HHCCCEEeCCCCHHHCC------CCCEEE-E
Confidence            57999995 999999 577665 7788864 5774321 122222    134665542 2223342      689887 5


Q ss_pred             cC--chhHHHHHHHHHHcCCcEEE
Q 031341          114 TD--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       114 T~--p~~~~~~~~~al~~g~~vVi  135 (161)
                      |+  |. ..+.+..|.++|++++.
T Consensus        73 spgi~~-~~~~~~~a~~~~i~i~~   95 (461)
T PRK00421         73 SSAIPD-DNPELVAARELGIPVVR   95 (461)
T ss_pred             CCCCCC-CCHHHHHHHHCCCcEEe
Confidence            52  33 23456667778888754

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.54  E-value=0.21  Score=44.40  Aligned_cols=85  Identities=13%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVI  111 (161)
                      ++-||.|+| .|++|+.+++.+. ..+.+ |-+.|+...  +..+++   .+.|+.++.  +..+.+.      ++|+||
T Consensus        14 ~~~~v~v~G-~G~sG~a~a~~L~-~~G~~-V~~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~~------~~d~vV   79 (473)
T PRK00141         14 LSGRVLVAG-AGVSGRGIAAMLS-ELGCD-VVVADDNET--ARHKLI---EVTGVADISTAEASDQLD------SFSLVV   79 (473)
T ss_pred             cCCeEEEEc-cCHHHHHHHHHHH-HCCCE-EEEECCChH--HHHHHH---HhcCcEEEeCCCchhHhc------CCCEEE
Confidence            445899999 5999999999886 66675 456775321  112221   134666643  2233342      688887


Q ss_pred             EccC--chhHHHHHHHHHHcCCcEE
Q 031341          112 DFTD--ASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       112 DfT~--p~~~~~~~~~al~~g~~vV  134 (161)
                       .|+  |... +.+.+|.++|++++
T Consensus        80 -~Spgi~~~~-p~~~~a~~~gi~v~  102 (473)
T PRK00141         80 -TSPGWRPDS-PLLVDAQSQGLEVI  102 (473)
T ss_pred             -eCCCCCCCC-HHHHHHHHCCCcee
Confidence             553  3332 45566677777754

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=94.52  E-value=0.37  Score=42.42  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC--HHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d--l~~~l~~~~~~~~~DVV  110 (161)
                      +-|+.|+| +|..|+.+++.+.+++  +++++|.+|.+...  .+.     .-.++|+..+  +.+.+.    +.++|.|
T Consensus       125 ~rrvlIiG-ag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~--~~~-----~i~g~pVlg~~~l~~~i~----~~~id~V  192 (456)
T TIGR03022       125 GRPAVIIG-AGQNAAILYRALQSNPQLGLRPLAVVDTDPAA--SGR-----LLTGLPVVGADDALRLYA----RTRYAYV  192 (456)
T ss_pred             CceEEEEe-CCHHHHHHHHHHhhCccCCcEEEEEEeCCccc--ccc-----ccCCCcccChhHHHHHHH----hCCCCEE
Confidence            35799999 5999999999987654  68999999953211  110     0235666644  334443    2578866


Q ss_pred             EEccCc----hhHHHHHHHHHHcCC-cEE
Q 031341          111 IDFTDA----STVYDNVKQATAFGM-RSV  134 (161)
Q Consensus       111 IDfT~p----~~~~~~~~~al~~g~-~vV  134 (161)
                      + .+.|    +...+.+..+.+.++ .+.
T Consensus       193 i-IAip~~~~~~~~~ll~~l~~~~v~~V~  220 (456)
T TIGR03022       193 I-VAMPGTQAEDMARLVRKLGALHFRNVL  220 (456)
T ss_pred             E-EecCCccHHHHHHHHHHHHhCCCeEEE
Confidence            6 3444    233456667777787 443

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=94.51  E-value=0.092  Score=44.00  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=27.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +|.|.|++|.+|+.+++.+.. .+.+++++..+
T Consensus         2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~   33 (343)
T TIGR01472         2 IALITGITGQDGSYLAEFLLE-KGYEVHGLIRR   33 (343)
T ss_pred             eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEecC
Confidence            789999999999999999984 58898876543

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.50  E-value=0.11  Score=43.43  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         6 ~~~vlVTGatGfiG~~l~~~L~~-~G~~V~~~~r~   39 (340)
T PLN02653          6 RKVALITGITGQDGSYLTEFLLS-KGYEVHGIIRR   39 (340)
T ss_pred             CCEEEEECCCCccHHHHHHHHHH-CCCEEEEEecc
Confidence            36899999999999999999984 58898877553

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.49  E-value=1.2  Score=37.60  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +||+|+|+ |.||..++..+....-.+ +.++|.
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi   33 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDV   33 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeC
Confidence            59999995 999999999887543336 667885

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06988 putative formyltransferase; Provisional

Probab=94.47  E-value=0.11  Score=44.16  Aligned_cols=71  Identities=18%  Similarity=0.369  Sum_probs=47.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCc----chhhhhcCCCCCCeeeeC--C-----HHHHHhcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGE----DIGMVCDMEQPLEIPVMS--D-----LTMVLGSI  101 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--~~g~----~~~~~~g~~~~~~i~v~~--d-----l~~~l~~~  101 (161)
                      ||||++.| ++.+|...++.|.+ .++++++|+-..  ..++    ++.+++   .+.++|++.  +     +.+.+.+ 
T Consensus         2 ~mkIvf~G-s~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~~-   75 (312)
T PRK06988          2 KPRAVVFA-YHNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVAA-   75 (312)
T ss_pred             CcEEEEEe-CcHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHHh-
Confidence            58999999 79999999999985 579999998742  1111    233343   356777753  2     2223332 


Q ss_pred             cccCCccEEEEcc
Q 031341          102 SQSKARAVVIDFT  114 (161)
Q Consensus       102 ~~~~~~DVVIDfT  114 (161)
                         ..+|++|-+.
T Consensus        76 ---~~~Dliv~~~   85 (312)
T PRK06988         76 ---AAPDFIFSFY   85 (312)
T ss_pred             ---cCCCEEEEeh
Confidence               5799877654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.47  E-value=0.12  Score=43.46  Aligned_cols=32  Identities=25%  Similarity=0.179  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .||.|.|++|.+|+.+++.+. ..+.++++...
T Consensus         5 k~ilItGatG~IG~~l~~~L~-~~G~~V~~~~r   36 (349)
T TIGR02622         5 KKVLVTGHTGFKGSWLSLWLL-ELGAEVYGYSL   36 (349)
T ss_pred             CEEEEECCCChhHHHHHHHHH-HCCCEEEEEeC
Confidence            589999999999999999998 45788876543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.45  E-value=0.3  Score=45.88  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=28.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ...-||+|+|+ |.||+.|+..+....|++++ ++|.
T Consensus       307 ~~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~-l~d~  341 (708)
T PRK11154        307 RPVNKVGVLGG-GLMGGGIAYVTATKAGLPVR-IKDI  341 (708)
T ss_pred             CcccEEEEECC-chhhHHHHHHHHHHcCCeEE-EEeC
Confidence            34468999995 99999999988767888866 5774

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=94.45  E-value=0.21  Score=42.24  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=26.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ||.|+|+ |..|.++++.|. ..|+.=.-++|.
T Consensus         1 kVlVVGa-GGlG~eilknLa-l~Gvg~I~IvD~   31 (291)
T cd01488           1 KILVIGA-GGLGCELLKNLA-LSGFRNIHVIDM   31 (291)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HcCCCeEEEECC
Confidence            6999995 999999999997 678887888884

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.44  E-value=0.13  Score=47.40  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=27.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .|.|.|++|++|+.+++.+. ..|++++++..+
T Consensus        82 vVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn  113 (576)
T PLN03209         82 LAFVAGATGKVGSRTVRELL-KLGFRVRAGVRS  113 (576)
T ss_pred             EEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCC
Confidence            59999999999999999987 458998877653

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=94.43  E-value=0.42  Score=37.94  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=26.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      |+|.|.|++|++|+.+++.+. ..|.+++.+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~-~~G~~V~~~~   31 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFI-QQGHKVIATG   31 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEE
Confidence            579999999999999999997 4588876543

>PLN02928 oxidoreductase family protein

Probab=94.42  E-value=0.14  Score=44.05  Aligned_cols=67  Identities=13%  Similarity=0.037  Sum_probs=42.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--------CCCCCeeeeCCHHHHHhcccccCCc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--------EQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~--------~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      -+|+|+| +|+||+.+++.+. .=|+++.+ +|+... .......+.        .... . -+.++++++.      .+
T Consensus       160 ktvGIiG-~G~IG~~vA~~l~-afG~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~L~ell~------~a  227 (347)
T PLN02928        160 KTVFILG-YGAIGIELAKRLR-PFGVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDEK-G-GHEDIYEFAG------EA  227 (347)
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCCC-hhhhhhhcccccccccccccc-C-cccCHHHHHh------hC
Confidence            6999999 7999999999987 56888875 464311 100000000        0001 1 3568999996      69


Q ss_pred             cEEEEcc
Q 031341          108 AVVIDFT  114 (161)
Q Consensus       108 DVVIDfT  114 (161)
                      |+|+-..
T Consensus       228 DiVvl~l  234 (347)
T PLN02928        228 DIVVLCC  234 (347)
T ss_pred             CEEEECC
Confidence            9999554

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.39  E-value=0.083  Score=42.36  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=29.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +.||.|+|++|.+|+.+++.+.. .+.++.++.++
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R~   50 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVRD   50 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEecC
Confidence            57999999999999999999875 58898887753

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.36  E-value=0.37  Score=39.01  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=27.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +|.|.|++|.+|+.+++.|.+. +.++.++...
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~   33 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRL   33 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence            4999999999999999999855 8998877763

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.31  E-value=0.43  Score=40.41  Aligned_cols=111  Identities=18%  Similarity=0.100  Sum_probs=59.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~------~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      +||.|+|+ |-||..+.-.|.+.. ..+.-+...+.      .|-.+.+..+.  ..-.+...+..+.+      ..+|+
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~--~~~~~~~~~~~~~~------~~~Dl   70 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGN--FTTPVVAATDAEAL------GPADL   70 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCc--cccccccccChhhc------CCCCE
Confidence            69999995 999999999998666 55555555321      12222221110  00011112222222      37999


Q ss_pred             EEEccCch---hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          110 VIDFTDAS---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       110 VIDfT~p~---~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      +|-++-..   ...+.+...+.....|++=--|+.-++  .|.+...+..|+
T Consensus        71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~~il  120 (307)
T COG1893          71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKETVL  120 (307)
T ss_pred             EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcceEE
Confidence            88777443   334444444444444554344665444  566666555443

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.30  E-value=0.51  Score=37.50  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=49.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -||.|+|+ |.+|...++.+.+ .+.+++ +++++. ...+.++..   ...+.. ...+++..-     .++|+||-+|
T Consensus        11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~~-~~~l~~l~~---~~~i~~~~~~~~~~~l-----~~adlViaaT   78 (202)
T PRK06718         11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPEL-TENLVKLVE---EGKIRWKQKEFEPSDI-----VDAFLVIAAT   78 (202)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCCC-CHHHHHHHh---CCCEEEEecCCChhhc-----CCceEEEEcC
Confidence            48999995 9999999998885 557766 555432 222333321   112322 122332221     3789888777


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031341          115 DASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vV  134 (161)
                      .-+.....+....+.++.+-
T Consensus        79 ~d~elN~~i~~~a~~~~lvn   98 (202)
T PRK06718         79 NDPRVNEQVKEDLPENALFN   98 (202)
T ss_pred             CCHHHHHHHHHHHHhCCcEE
Confidence            55555444433336676544

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.27  E-value=0.4  Score=38.75  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=44.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc--h----hhhhcCCCCCC-eeeeCCHHHHHhcccc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED--I----GMVCDMEQPLE-IPVMSDLTMVLGSISQ  103 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~e--Lvavvd~~~---~g~~--~----~~~~g~~~~~~-i~v~~dl~~~l~~~~~  103 (161)
                      .||.|+|+ |.+|+.+++.+.. .++.  =+.++|++.   ..+.  +    .++..   +.+ -....++.+.+.    
T Consensus        26 ~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~~~~~l~~~l~----   96 (226)
T cd05311          26 VKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEKTGGTLKEALK----   96 (226)
T ss_pred             CEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCcccCCHHHHHh----
Confidence            58999996 9999999999974 4776  567888751   1111  0    11211   110 012136767664    


Q ss_pred             cCCccEEEEccCchh
Q 031341          104 SKARAVVIDFTDAST  118 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~  118 (161)
                        ++|++|..|++..
T Consensus        97 --~~dvlIgaT~~G~  109 (226)
T cd05311          97 --GADVFIGVSRPGV  109 (226)
T ss_pred             --cCCEEEeCCCCCC
Confidence              6999998886443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.25  E-value=0.38  Score=45.25  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=26.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .-||+|+|+ |.||+.|+..+. ..|++++ ++|.
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~  344 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSA-SKGVPVI-MKDI  344 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHH-hCCCeEE-EEeC
Confidence            358999995 999999999876 6688865 6774

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=94.25  E-value=0.14  Score=44.06  Aligned_cols=91  Identities=12%  Similarity=0.028  Sum_probs=61.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      -.++|+| +|.+++..++.+...-+++=+-+++++.. .++....+.  ...+  +...+|.++++.      ++|+|+=
T Consensus       131 ~~laiIG-aG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~--~~~~~~v~a~~s~~~av~------~aDiIvt  201 (330)
T COG2423         131 STLAIIG-AGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLR--KRGGEAVGAADSAEEAVE------GADIVVT  201 (330)
T ss_pred             cEEEEEC-CcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHH--hhcCccceeccCHHHHhh------cCCEEEE
Confidence            4689999 59999999999999888888888986532 112221111  1223  445688899885      7999994


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE-Ee
Q 031341          113 FTDASTVYDNVKQATAFGMRSV-VY  136 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vV-ig  136 (161)
                      +| |....-.....++.|.|+. +|
T Consensus       202 ~T-~s~~Pil~~~~l~~G~hI~aiG  225 (330)
T COG2423         202 AT-PSTEPVLKAEWLKPGTHINAIG  225 (330)
T ss_pred             ec-CCCCCeecHhhcCCCcEEEecC
Confidence            44 4444333356678999976 44

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.25  E-value=0.56  Score=40.88  Aligned_cols=85  Identities=13%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -||.|+| .|++|..+++.+. ..+.++. ++|............+   +   ....+.+...      .++|++|-...
T Consensus         4 ~~i~iiG-lG~~G~slA~~l~-~~G~~V~-g~D~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~dlvV~s~g   68 (418)
T PRK00683          4 QRVVVLG-LGVTGKSIARFLA-QKGVYVI-GVDKSLEALQSCPYIH---E---RYLENAEEFP------EQVDLVVRSPG   68 (418)
T ss_pred             CeEEEEE-ECHHHHHHHHHHH-HCCCEEE-EEeCCccccchhHHHh---h---hhcCCcHHHh------cCCCEEEECCC
Confidence            3799999 5999999888876 5667744 5774321110000000   0   0112333333      26898884443


Q ss_pred             chhHHHHHHHHHHcCCcEEE
Q 031341          116 ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVi  135 (161)
                      .....+.+..|+++|+++|.
T Consensus        69 i~~~~~~l~~A~~~g~~vv~   88 (418)
T PRK00683         69 IKKEHPWVQAAIASHIPVVT   88 (418)
T ss_pred             CCCCcHHHHHHHHCCCcEEE
Confidence            34557888999999998665

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.23  E-value=0.24  Score=42.34  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=54.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeeeC---CHHHHHhcccccCCccEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~-~~~g~~~~~~i~v~~---dl~~~l~~~~~~~~~DVVID  112 (161)
                      +|+|+|+ |-+|-..+..+. .-+..-+-++|....-.+.. ++.+.    .+.+..   +..+...++.+...+|++||
T Consensus       171 ~V~V~Ga-GpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vie  244 (350)
T COG1063         171 TVVVVGA-GPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVIE  244 (350)
T ss_pred             EEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence            7999995 999998866554 55665566667532111111 11111    111111   11111111111236999999


Q ss_pred             ccC-chhHHHHHHHHHHcCCcEEEeCCCCC
Q 031341          113 FTD-ASTVYDNVKQATAFGMRSVVYVPHIQ  141 (161)
Q Consensus       113 fT~-p~~~~~~~~~al~~g~~vVigttg~~  141 (161)
                      +|- +.+...-+..+...|.-+++|+++-.
T Consensus       245 ~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         245 AVGSPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             CCCCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            995 44444555666666677778887543

>PRK06180 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.28  Score=39.73  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|.|.|++|.+|+.+++.+. ..|.+++++..
T Consensus         5 ~~vlVtGasggiG~~la~~l~-~~G~~V~~~~r   36 (277)
T PRK06180          5 KTWLITGVSSGFGRALAQAAL-AAGHRVVGTVR   36 (277)
T ss_pred             CEEEEecCCChHHHHHHHHHH-hCcCEEEEEeC
Confidence            469999999999999999987 45899776543

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=94.18  E-value=0.4  Score=39.56  Aligned_cols=85  Identities=22%  Similarity=0.319  Sum_probs=55.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----e---CCHHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~---~dl~~~l~~~~~~~~~  107 (161)
                      |.+|.|+|+ =.=||.+++.|.+. +..+..-+... .|.  ..      ..++++    +   +++.+.+.    +.++
T Consensus         2 ~~~IlvlgG-T~egr~la~~L~~~-g~~v~~Svat~-~g~--~~------~~~~~v~~G~l~~~~~l~~~l~----~~~i   66 (248)
T PRK08057          2 MPRILLLGG-TSEARALARALAAA-GVDIVLSLAGR-TGG--PA------DLPGPVRVGGFGGAEGLAAYLR----EEGI   66 (248)
T ss_pred             CceEEEEec-hHHHHHHHHHHHhC-CCeEEEEEccC-CCC--cc------cCCceEEECCCCCHHHHHHHHH----HCCC
Confidence            578999995 56699999988744 67665444322 222  11      122222    1   34455554    4799


Q ss_pred             cEEEEccCchhHH--HHH-HHHHHcCCcEE
Q 031341          108 AVVIDFTDASTVY--DNV-KQATAFGMRSV  134 (161)
Q Consensus       108 DVVIDfT~p~~~~--~~~-~~al~~g~~vV  134 (161)
                      ++|||+|+|-+..  +++ ..|.+.|+|.+
T Consensus        67 ~~VIDATHPfA~~is~~a~~ac~~~~ipyi   96 (248)
T PRK08057         67 DLVIDATHPYAAQISANAAAACRALGIPYL   96 (248)
T ss_pred             CEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence            9999999997662  444 78899999988

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=94.17  E-value=0.11  Score=43.66  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=24.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ||+|+|+ |.+|+.++..+....-..=+.++|+
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~   33 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI   33 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            8999995 9999999999875543322457775

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.16  E-value=0.73  Score=40.38  Aligned_cols=88  Identities=17%  Similarity=0.210  Sum_probs=49.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -||.|+|. |++|..+++.+. ..+.+++ +.|....-....++-..  ..|+.++. ...+.+.     .++|+|| .|
T Consensus         6 ~~~~v~G~-g~~G~~~a~~l~-~~g~~v~-~~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~-----~~~d~vv-~s   74 (445)
T PRK04308          6 KKILVAGL-GGTGISMIAYLR-KNGAEVA-AYDAELKPERVAQIGKM--FDGLVFYTGRLKDALD-----NGFDILA-LS   74 (445)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHH-----hCCCEEE-EC
Confidence            47999995 999999988775 6678866 45642211111111100  13555532 2122222     3689888 55


Q ss_pred             C--chhHHHHHHHHHHcCCcEEE
Q 031341          115 D--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       115 ~--p~~~~~~~~~al~~g~~vVi  135 (161)
                      +  |. ..+.+..|.++|++++.
T Consensus        75 pgi~~-~~p~~~~a~~~~i~v~~   96 (445)
T PRK04308         75 PGISE-RQPDIEAFKQNGGRVLG   96 (445)
T ss_pred             CCCCC-CCHHHHHHHHcCCcEEE
Confidence            2  32 23566777778888654

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=94.14  E-value=0.14  Score=40.07  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=25.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA   66 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvav   66 (161)
                      ++|.|.|++|++|+.+++.+.+. ++..++..
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~   32 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHAT   32 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence            48999999999999999999865 45665543

>PRK07904 short chain dehydrogenase; Provisional

Probab=94.13  E-value=0.57  Score=37.65  Aligned_cols=33  Identities=24%  Similarity=0.165  Sum_probs=27.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|.|.|++|++|+.+++.+.+..+.+++.+..
T Consensus         9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r   41 (253)
T PRK07904          9 QTILLLGGTSEIGLAICERYLKNAPARVVLAAL   41 (253)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence            479999999999999999998776788876543

>PRK05442 malate dehydrogenase; Provisional

Probab=94.12  E-value=0.19  Score=43.02  Aligned_cols=73  Identities=12%  Similarity=0.257  Sum_probs=41.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcE-----EEEEEecCC-----CCc--chhhhh-cCCCCCCeeeeCCHHHHHhc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGME-----VAGAIDSHS-----VGE--DIGMVC-DMEQPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e-----Lvavvd~~~-----~g~--~~~~~~-g~~~~~~i~v~~dl~~~l~~  100 (161)
                      .|.||+|+|++|.+|..++-.+....=+.     =...+|...     .|.  |+...+ ..  ..++.++.+..+.+  
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~--~~~~~i~~~~y~~~--   78 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL--LAGVVITDDPNVAF--   78 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh--cCCcEEecChHHHh--
Confidence            46899999977999999988776433222     344777421     221  222221 11  11345554554555  


Q ss_pred             ccccCCccEEEEcc
Q 031341          101 ISQSKARAVVIDFT  114 (161)
Q Consensus       101 ~~~~~~~DVVIDfT  114 (161)
                          .++|+||...
T Consensus        79 ----~daDiVVita   88 (326)
T PRK05442         79 ----KDADVALLVG   88 (326)
T ss_pred             ----CCCCEEEEeC
Confidence                3899888543

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=94.12  E-value=0.33  Score=34.87  Aligned_cols=87  Identities=13%  Similarity=0.198  Sum_probs=46.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |||.|+| +|.=-.+++..+.+++..+=+.++-- +.|..  .+     ...+++ .+|.+++.+ .+++.++|.|| ..
T Consensus         1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~aPG-N~G~~--~~-----~~~~~~~~~d~~~l~~-~a~~~~idlvv-vG   69 (100)
T PF02844_consen    1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVAPG-NPGTA--EL-----GKNVPIDITDPEELAD-FAKENKIDLVV-VG   69 (100)
T ss_dssp             EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEEE---TTGG--GT-----SEEE-S-TT-HHHHHH-HHHHTTESEEE-ES
T ss_pred             CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEeCC-CHHHH--hh-----ceecCCCCCCHHHHHH-HHHHcCCCEEE-EC
Confidence            7999999 79555555677777777765555442 22211  00     011221 355665532 33457888777 44


Q ss_pred             CchhHH-HHHHHHHHcCCcE
Q 031341          115 DASTVY-DNVKQATAFGMRS  133 (161)
Q Consensus       115 ~p~~~~-~~~~~al~~g~~v  133 (161)
                      +-.... -.+....++|+++
T Consensus        70 PE~pL~~Gl~D~l~~~gi~v   89 (100)
T PF02844_consen   70 PEAPLVAGLADALRAAGIPV   89 (100)
T ss_dssp             SHHHHHTTHHHHHHHTT-CE
T ss_pred             ChHHHHHHHHHHHHHCCCcE
Confidence            333332 3556666788885

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=94.08  E-value=0.33  Score=42.14  Aligned_cols=101  Identities=15%  Similarity=0.236  Sum_probs=64.5

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhc----CCcEE-EE--EEecCCCC--cchhh-----------hhcCCCCCCeeeeC
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEV-AG--AIDSHSVG--EDIGM-----------VCDMEQPLEIPVMS   92 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~----~~~eL-va--vvd~~~~g--~~~~~-----------~~g~~~~~~i~v~~   92 (161)
                      .+++||.|+| +|+=|+.+++.+.+.    +-++. |.  +.+-...|  +.+.+           +-|+.-+.++...+
T Consensus        19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             cCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            3469999999 799999999987643    21111 11  11111122  12222           22333345677789


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHH----HHHHHHHHcCCcEEEeCCCCC
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVY----DNVKQATAFGMRSVVYVPHIQ  141 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~----~~~~~al~~g~~vVigttg~~  141 (161)
                      |+.++..      ++|++| |..|+...    +.+...++.+.+.|+=+-|++
T Consensus        98 dl~ea~~------dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e  143 (372)
T KOG2711|consen   98 DLVEAAK------DADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVE  143 (372)
T ss_pred             hHHHHhc------cCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence            9999875      799999 88887653    566778888888887666654

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.06  E-value=0.64  Score=41.32  Aligned_cols=84  Identities=11%  Similarity=0.103  Sum_probs=47.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -||+|+| .|+-|+..++.+. . +.+++ +.|......  ..+.... .... ......+.+.      ++|.|| .|+
T Consensus         7 ~~v~v~G-~G~sG~a~~~~L~-~-g~~v~-v~D~~~~~~--~~~~~~~-~~~~-~~~~~~~~~~------~~d~vV-~SP   71 (454)
T PRK01368          7 QKIGVFG-LGKTGISVYEELQ-N-KYDVI-VYDDLKANR--DIFEELY-SKNA-IAALSDSRWQ------NLDKIV-LSP   71 (454)
T ss_pred             CEEEEEe-ecHHHHHHHHHHh-C-CCEEE-EECCCCCch--HHHHhhh-cCce-eccCChhHhh------CCCEEE-ECC
Confidence            4899999 6999999999987 4 88754 677322111  1111100 0011 1111223343      689877 552


Q ss_pred             --chhHHHHHHHHHHcCCcEEE
Q 031341          116 --ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       116 --p~~~~~~~~~al~~g~~vVi  135 (161)
                        |. ..+.+..+.++|++++.
T Consensus        72 gI~~-~~p~~~~a~~~gi~v~~   92 (454)
T PRK01368         72 GIPL-THEIVKIAKNFNIPITS   92 (454)
T ss_pred             CCCC-CCHHHHHHHHCCCceec
Confidence              33 33566777788888753

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.04  E-value=0.32  Score=41.31  Aligned_cols=71  Identities=20%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      .||+|+|+ |++|..++-.+...+-..=..++|...   .|  .|+...........+..+.|+++ +      .++|+|
T Consensus         4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~------~~adiv   75 (312)
T cd05293           4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T------ANSKVV   75 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h------CCCCEE
Confidence            59999996 999999999887665555466888532   12  12222221111113444478887 4      389998


Q ss_pred             EEcc
Q 031341          111 IDFT  114 (161)
Q Consensus       111 IDfT  114 (161)
                      |.+.
T Consensus        76 vita   79 (312)
T cd05293          76 IVTA   79 (312)
T ss_pred             EECC
Confidence            8643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=94.03  E-value=0.22  Score=43.77  Aligned_cols=28  Identities=14%  Similarity=0.283  Sum_probs=23.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGM   61 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~   61 (161)
                      .++||+|+|++|++|..++-.+....=+
T Consensus        43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~   70 (387)
T TIGR01757        43 KTVNVAVSGAAGMISNHLLFMLASGEVF   70 (387)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccc
Confidence            4799999998899999999988754443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=94.02  E-value=0.28  Score=42.08  Aligned_cols=82  Identities=16%  Similarity=0.099  Sum_probs=53.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|+| +|.-|+.++..+. +.+++++-.........+.++      +.|..++ +++++..      .+|+|...+ 
T Consensus        19 K~iaIIG-YGsQG~ahalNLR-DSGlnViiGlr~g~~s~~kA~------~dGf~V~-~v~ea~k------~ADvim~L~-   82 (338)
T COG0059          19 KKVAIIG-YGSQGHAQALNLR-DSGLNVIIGLRKGSSSWKKAK------EDGFKVY-TVEEAAK------RADVVMILL-   82 (338)
T ss_pred             CeEEEEe-cChHHHHHHhhhh-hcCCcEEEEecCCchhHHHHH------hcCCEee-cHHHHhh------cCCEEEEeC-
Confidence            4899999 7999999999875 889997766653221122222      3455554 7888875      799998666 


Q ss_pred             chhH-----HHHHHHHHHcCCcE
Q 031341          116 ASTV-----YDNVKQATAFGMRS  133 (161)
Q Consensus       116 p~~~-----~~~~~~al~~g~~v  133 (161)
                      |+..     ...+.-.++.|..+
T Consensus        83 PDe~q~~vy~~~I~p~Lk~G~aL  105 (338)
T COG0059          83 PDEQQKEVYEKEIAPNLKEGAAL  105 (338)
T ss_pred             chhhHHHHHHHHhhhhhcCCceE
Confidence            4322     23455556666543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.02  E-value=0.12  Score=40.29  Aligned_cols=97  Identities=19%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -++.|+| +|+.|+.+++.+. .-+.++ -|++.++. +.+...     ..|+.+. ++++++.      .+|++|-.|-
T Consensus        24 k~vvV~G-YG~vG~g~A~~lr-~~Ga~V-~V~e~DPi-~alqA~-----~dGf~v~-~~~~a~~------~adi~vtaTG   87 (162)
T PF00670_consen   24 KRVVVIG-YGKVGKGIARALR-GLGARV-TVTEIDPI-RALQAA-----MDGFEVM-TLEEALR------DADIFVTATG   87 (162)
T ss_dssp             SEEEEE---SHHHHHHHHHHH-HTT-EE-EEE-SSHH-HHHHHH-----HTT-EEE--HHHHTT------T-SEEEE-SS
T ss_pred             CEEEEeC-CCcccHHHHHHHh-hCCCEE-EEEECChH-HHHHhh-----hcCcEec-CHHHHHh------hCCEEEECCC
Confidence            4799999 8999999999987 446664 46664321 111111     1244443 7888875      7999997775


Q ss_pred             chhH--HHHHHHHHHcCCcEEEeCCC-CCHH-HHHHHHHH
Q 031341          116 ASTV--YDNVKQATAFGMRSVVYVPH-IQLE-TVSALSAF  151 (161)
Q Consensus       116 p~~~--~~~~~~al~~g~~vVigttg-~~~e-~~~~L~~~  151 (161)
                      +...  .++.. .++.|.-  +...| ++.| +.+.|.+.
T Consensus        88 ~~~vi~~e~~~-~mkdgai--l~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   88 NKDVITGEHFR-QMKDGAI--LANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             SSSSB-HHHHH-HS-TTEE--EEESSSSTTSBTHHHHHTC
T ss_pred             CccccCHHHHH-HhcCCeE--EeccCcCceeEeecccccc
Confidence            5443  34444 3555544  44433 3322 34455554

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.02  E-value=0.55  Score=39.34  Aligned_cols=94  Identities=15%  Similarity=0.113  Sum_probs=49.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +|.|.|+ |.+|...++.+. .-+.+-+.++++.....+...-+|..   .+.-+  .++++....   ...+|+++|++
T Consensus       172 ~VlV~G~-G~vG~~aiqlak-~~G~~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~---~g~~D~vid~~  243 (343)
T PRK09880        172 RVFVSGV-GPIGCLIVAAVK-TLGAAEIVCADVSPRSLSLAREMGAD---KLVNPQNDDLDHYKAE---KGYFDVSFEVS  243 (343)
T ss_pred             EEEEECC-CHHHHHHHHHHH-HcCCcEEEEEeCCHHHHHHHHHcCCc---EEecCCcccHHHHhcc---CCCCCEEEECC
Confidence            7999995 999999987665 56775333444322111222212211   11111  234444321   12489999998


Q ss_pred             CchhHHHHHHHHHHcC-CcEEEeCC
Q 031341          115 DASTVYDNVKQATAFG-MRSVVYVP  138 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g-~~vVigtt  138 (161)
                      ......+.+..+++.| +-+.+|.+
T Consensus       244 G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        244 GHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             CCHHHHHHHHHHhhcCCEEEEEccC
Confidence            6544444454555554 54456653

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.99  E-value=0.4  Score=39.10  Aligned_cols=96  Identities=17%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      +|.|+|+ |.+|...++.+. .-+.+.+.++++.....+..+-+|..   .+.-+.+..+.+.++.....+|+++|++-.
T Consensus       123 ~VlV~G~-G~vG~~~~~~ak-~~G~~~Vi~~~~~~~r~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~g~d~vid~~G~  197 (280)
T TIGR03366       123 RVLVVGA-GMLGLTAAAAAA-AAGAARVVAADPSPDRRELALSFGAT---ALAEPEVLAERQGGLQNGRGVDVALEFSGA  197 (280)
T ss_pred             EEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCHHHHHHHHHcCCc---EecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence            7999996 999999888665 56876333445322111111112211   011112222222111112368999999854


Q ss_pred             hhHHHHHHHHH-HcCCcEEEeC
Q 031341          117 STVYDNVKQAT-AFGMRSVVYV  137 (161)
Q Consensus       117 ~~~~~~~~~al-~~g~~vVigt  137 (161)
                      ....+.+..++ ..|.-+++|.
T Consensus       198 ~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       198 TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             hHHHHHHHHHhcCCCEEEEecc
Confidence            44444444444 4445555664

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.99  E-value=0.34  Score=43.32  Aligned_cols=83  Identities=20%  Similarity=0.174  Sum_probs=50.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -||.|+| .|+.|...++.+. ..+.++.+ .|....  ....+    .+.|+.++.  ...+.+.      .+|+||..
T Consensus        13 ~~v~V~G-~G~sG~aa~~~L~-~~G~~v~~-~D~~~~--~~~~l----~~~g~~~~~~~~~~~~l~------~~D~VV~S   77 (488)
T PRK03369         13 APVLVAG-AGVTGRAVLAALT-RFGARPTV-CDDDPD--ALRPH----AERGVATVSTSDAVQQIA------DYALVVTS   77 (488)
T ss_pred             CeEEEEc-CCHHHHHHHHHHH-HCCCEEEE-EcCCHH--HHHHH----HhCCCEEEcCcchHhHhh------cCCEEEEC
Confidence            4799999 5999999998665 77888765 774321  11111    133554432  2333443      68988854


Q ss_pred             c-CchhHHHHHHHHHHcCCcEE
Q 031341          114 T-DASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       114 T-~p~~~~~~~~~al~~g~~vV  134 (161)
                      . .|.. .+.+.+|.++|++++
T Consensus        78 pGi~~~-~p~~~~a~~~gi~v~   98 (488)
T PRK03369         78 PGFRPT-APVLAAAAAAGVPIW   98 (488)
T ss_pred             CCCCCC-CHHHHHHHHCCCcEe
Confidence            4 2433 355666677777654

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=93.99  E-value=0.094  Score=41.72  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=30.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ++|.|.|+||..|+.+++.|... +.++++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~   34 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNP   34 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeCH
Confidence            47999999999999999999866 99999888853

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=93.97  E-value=0.75  Score=41.20  Aligned_cols=86  Identities=16%  Similarity=0.245  Sum_probs=53.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -|+.|+| +|..|+.+++.+..++  +++++|.+|.+..+   ..      -.|+|+..+.+++.. ..++...|++|-.
T Consensus       147 rrvLIIG-aG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~---~~------i~gvPVlg~~d~l~~-~~~~~~v~vIIAi  215 (476)
T PRK15204        147 KKTIILG-SGQNARGAYSALQSEEMMGFDVIAFFDTDASD---AE------INMLPVIKDTEIIWD-LNRTGDVHYILAY  215 (476)
T ss_pred             CeEEEEE-CCHHHHHHHHHHHhCccCCcEEEEEEcCCccc---cc------cCCCcccCCHHHHHH-HHHhCCCcEEEEe
Confidence            5799999 5999999999998655  78999999954321   11      246777766553311 0012356664422


Q ss_pred             cCch--hHHHHHHHHHHcCCc
Q 031341          114 TDAS--TVYDNVKQATAFGMR  132 (161)
Q Consensus       114 T~p~--~~~~~~~~al~~g~~  132 (161)
                      ..++  ...+.+..+.+.|+.
T Consensus       216 p~~~~~~r~~il~~l~~~gv~  236 (476)
T PRK15204        216 EYTELEKTHFWLRELSKHHCR  236 (476)
T ss_pred             CcCcHHHHHHHHHHHhhcCCe
Confidence            2122  223566777777874

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.95  E-value=0.078  Score=41.69  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         6 ~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r   37 (251)
T PRK07231          6 KVAIVTGASSGIGEGIARRFA-AEGARVVVTDR   37 (251)
T ss_pred             cEEEEECCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence            479999999999999999997 55888665544

>PRK07825 short chain dehydrogenase; Provisional

Probab=93.94  E-value=0.71  Score=37.08  Aligned_cols=30  Identities=37%  Similarity=0.386  Sum_probs=25.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      .++.|.|++|.+|+.+++.+. ..+.+++.+
T Consensus         6 ~~ilVtGasggiG~~la~~l~-~~G~~v~~~   35 (273)
T PRK07825          6 KVVAITGGARGIGLATARALA-ALGARVAIG   35 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEE
Confidence            479999999999999999997 457886544

>PRK08267 short chain dehydrogenase; Provisional

Probab=93.92  E-value=0.37  Score=38.37  Aligned_cols=31  Identities=32%  Similarity=0.462  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         2 k~vlItGasg~iG~~la~~l~-~~G~~V~~~~   32 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFA-AEGWRVGAYD   32 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHH-HCCCeEEEEe
Confidence            469999999999999999997 4578876543

>PLN02686 cinnamoyl-CoA reductase

Probab=93.91  E-value=0.099  Score=44.76  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ...+.+|.|.|++|.+|+.+++.+. ..|.++++++++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~-~~G~~V~~~~r~   86 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLL-RHGYSVRIAVDT   86 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEeCC
Confidence            3445789999999999999999997 568998877663

>PRK07454 short chain dehydrogenase; Provisional

Probab=93.88  E-value=0.68  Score=36.32  Aligned_cols=33  Identities=30%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      +|-++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~-~~G~~V~~~~   37 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFA-KAGWDLALVA   37 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEe
Confidence            35579999999999999999997 4677766543

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=93.86  E-value=0.16  Score=45.79  Aligned_cols=68  Identities=15%  Similarity=0.221  Sum_probs=43.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      --+|+|+| +|..|+..+..+. ..+++++......     ..+.+...      +.|.++ .++++++.      .+|+
T Consensus        36 gKtIaIIG-yGSqG~AqAlNLr-dSGvnVvvglr~~~id~~~~s~~kA~------~dGF~v-~~~~Ea~~------~ADv  100 (487)
T PRK05225         36 GKKIVIVG-CGAQGLNQGLNMR-DSGLDISYALRKEAIAEKRASWRKAT------ENGFKV-GTYEELIP------QADL  100 (487)
T ss_pred             CCEEEEEc-cCHHHHHHhCCCc-cccceeEEeccccccccccchHHHHH------hcCCcc-CCHHHHHH------hCCE
Confidence            37999999 6999998877654 6788877444321     11222211      124444 57888885      7999


Q ss_pred             EEEccCchh
Q 031341          110 VIDFTDAST  118 (161)
Q Consensus       110 VIDfT~p~~  118 (161)
                      |+-.+ |+.
T Consensus       101 VviLl-PDt  108 (487)
T PRK05225        101 VINLT-PDK  108 (487)
T ss_pred             EEEcC-ChH
Confidence            99444 544

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=93.84  E-value=0.4  Score=40.13  Aligned_cols=31  Identities=13%  Similarity=0.207  Sum_probs=25.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvav   66 (161)
                      .+|.|.|++|.+|+.+++.+.+.. ..+++.+
T Consensus         5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~   36 (324)
T TIGR03589         5 KSILITGGTGSFGKAFISRLLENYNPKKIIIY   36 (324)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence            579999999999999999998763 4676644

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07578 short chain dehydrogenase; Provisional

Probab=93.83  E-value=0.21  Score=38.26  Aligned_cols=30  Identities=40%  Similarity=0.520  Sum_probs=24.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      +++.|.|++|.+|+.+++.+.+.  .+++.+.
T Consensus         1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~   30 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR--HEVITAG   30 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence            37999999999999999999865  6666544

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=93.81  E-value=0.58  Score=41.12  Aligned_cols=83  Identities=19%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             eEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCH-HHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl-~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++-++|. |+.|.. +++.+. ..|.++. +.|..... ....+    .+.++.++... .+.+      .++|+|| .|
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~-~~G~~v~-~~D~~~~~-~~~~l----~~~gi~~~~g~~~~~~------~~~d~vV-~s   65 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILL-NRGYQVS-GSDIAENA-TTKRL----EALGIPIYIGHSAENL------DDADVVV-VS   65 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHH-HCCCeEE-EECCCcch-HHHHH----HHCcCEEeCCCCHHHC------CCCCEEE-EC
Confidence            4788995 999998 777665 7788865 67743211 11122    13466665322 2333      2689887 55


Q ss_pred             C--chhHHHHHHHHHHcCCcEEE
Q 031341          115 D--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       115 ~--p~~~~~~~~~al~~g~~vVi  135 (161)
                      +  |. ..+.+..|.++|++++.
T Consensus        66 pgi~~-~~p~~~~a~~~~i~v~~   87 (448)
T TIGR01082        66 AAIKD-DNPEIVEAKERGIPVIR   87 (448)
T ss_pred             CCCCC-CCHHHHHHHHcCCceEe
Confidence            2  33 23556667778887653

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.81  E-value=0.62  Score=41.00  Aligned_cols=31  Identities=32%  Similarity=0.291  Sum_probs=24.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .||.|+| .|+.|...++.+. ..|.+ |.++|.
T Consensus        10 ~~i~viG-~G~~G~~~a~~l~-~~G~~-v~~~D~   40 (460)
T PRK01390         10 KTVAVFG-LGGSGLATARALV-AGGAE-VIAWDD   40 (460)
T ss_pred             CEEEEEe-ecHhHHHHHHHHH-HCCCE-EEEECC
Confidence            4899999 5999999887775 66787 456774

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=93.80  E-value=0.2  Score=44.18  Aligned_cols=89  Identities=17%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             eeEEEEcCCCHHHHHHHH--HHH---hcCCcEEEEEEecCCC-----CcchhhhhcC-CCCCCeeeeCCHHHHHhccccc
Q 031341           36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHSV-----GEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQS  104 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~--~l~---~~~~~eLvavvd~~~~-----g~~~~~~~g~-~~~~~i~v~~dl~~~l~~~~~~  104 (161)
                      +||+|+|+ |.||...+-  .+.   ..++.+++ ++|++..     ..+....... .....+..++|+++++.     
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~-----   73 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD-----   73 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc-----
Confidence            58999995 999997543  344   35556644 6775321     1111111111 01234566889999885     


Q ss_pred             CCccEEEEccCchhHH---HHHHHHHHcCCc
Q 031341          105 KARAVVIDFTDASTVY---DNVKQATAFGMR  132 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~---~~~~~al~~g~~  132 (161)
                       ++|+||....+....   ..-+..+++|+-
T Consensus        74 -~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~  103 (423)
T cd05297          74 -GADFVINTIQVGGHEYTETDFEIPEKYGYY  103 (423)
T ss_pred             -CCCEEEEeeEecCccchhhhhhhHHHcCee
Confidence             899999554332221   222355666654

linked to 3D####ucture

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.76  E-value=0.62  Score=40.81  Aligned_cols=84  Identities=18%  Similarity=0.150  Sum_probs=47.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Cc-chhhhhcCCCCCCeeeeCC--HH-----HHHhcccccCCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GE-DIGMVCDMEQPLEIPVMSD--LT-----MVLGSISQSKAR  107 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~-~~~~~~g~~~~~~i~v~~d--l~-----~~l~~~~~~~~~  107 (161)
                      ||.|+| .|+.|...++.+. ..|.++. +.|.... .. +..+.+   .+.|+.++..  .+     ..+      .++
T Consensus         2 ~v~viG-~G~sG~s~a~~l~-~~G~~V~-~~D~~~~~~~~~~~~~l---~~~gi~~~~g~~~~~~~~~~~~------~~~   69 (459)
T PRK02705          2 IAHVIG-LGRSGIAAARLLK-AQGWEVV-VSDRNDSPELLERQQEL---EQEGITVKLGKPLELESFQPWL------DQP   69 (459)
T ss_pred             eEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCCchhhHHHHHHH---HHcCCEEEECCccchhhhhHHh------hcC
Confidence            799999 5999999877765 6688754 6774321 11 111111   1335554321  11     234      268


Q ss_pred             cEEEEccC--chhHHHHHHHHHHcCCcEE
Q 031341          108 AVVIDFTD--ASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       108 DVVIDfT~--p~~~~~~~~~al~~g~~vV  134 (161)
                      |.|| .|+  |.. .+.+.+|.+.|++++
T Consensus        70 d~vv-~s~gi~~~-~~~~~~a~~~~i~v~   96 (459)
T PRK02705         70 DLVV-VSPGIPWD-HPTLVELRERGIEVI   96 (459)
T ss_pred             CEEE-ECCCCCCC-CHHHHHHHHcCCcEE
Confidence            9877 442  222 345666667777765

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=93.74  E-value=1.8  Score=35.31  Aligned_cols=69  Identities=16%  Similarity=0.143  Sum_probs=40.7

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           38 VIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |+|+|+.|.||..++..+...+  ...=+..+|...   .+  .++.+.........+..++|+++.+.      ++|+|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~------~aDiV   74 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK------DADVV   74 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC------CCCEE
Confidence            6899977999999999887555  323355778532   11  12222221100124555677777764      78887


Q ss_pred             EE
Q 031341          111 ID  112 (161)
Q Consensus       111 ID  112 (161)
                      |.
T Consensus        75 v~   76 (263)
T cd00650          75 II   76 (263)
T ss_pred             EE
Confidence            75

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd00704 MDH Malate dehydrogenase

Probab=93.71  E-value=0.36  Score=41.17  Aligned_cols=72  Identities=15%  Similarity=0.161  Sum_probs=41.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcE-----EEEEEecCC-----CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGME-----VAGAIDSHS-----VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQ  103 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~e-----Lvavvd~~~-----~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~  103 (161)
                      +||+|+||+|++|+.++..+...+-+.     -+..+|...     .|  .|+.+.+... ..+..+..+..+.+.    
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~-~~~~~i~~~~~~~~~----   75 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL-LKGVVITTDPEEAFK----   75 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccc-cCCcEEecChHHHhC----
Confidence            589999988999999999887544332     144667432     11  1222211000 112344455556664    


Q ss_pred             cCCccEEEEcc
Q 031341          104 SKARAVVIDFT  114 (161)
Q Consensus       104 ~~~~DVVIDfT  114 (161)
                        ++|+||-..
T Consensus        76 --~aDiVVitA   84 (323)
T cd00704          76 --DVDVAILVG   84 (323)
T ss_pred             --CCCEEEEeC
Confidence              899888544

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06153 hypothetical protein; Provisional

Probab=93.71  E-value=0.34  Score=42.68  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .||+|+|+ |+.|+.++..|.+..--+|+ ++|.
T Consensus       177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD~  208 (393)
T PRK06153        177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFDG  208 (393)
T ss_pred             CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EECC
Confidence            59999995 99999999999977655554 6773

>COG2403 Predicted GTPase [General function prediction only]

Probab=93.69  E-value=0.36  Score=42.59  Aligned_cols=96  Identities=21%  Similarity=0.282  Sum_probs=64.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchh--hhhcCCCCCCeeeeCC-----HHHHHhccccc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIG--MVCDMEQPLEIPVMSD-----LTMVLGSISQS  104 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g--~~~~--~~~g~~~~~~i~v~~d-----l~~~l~~~~~~  104 (161)
                      .+.||.+.|+.|+==-..=..+...|.++++++..-...|  .+..  ++.|...+.|+|++.+     +++++.+    
T Consensus         5 a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire----   80 (449)
T COG2403           5 ARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIRE----   80 (449)
T ss_pred             CceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHHH----
Confidence            3578999998665433333445578889998887733221  1111  2344334678888643     6666764    


Q ss_pred             CCcc-EEEEcc--CchhHHHHHHHHHHcCCcE
Q 031341          105 KARA-VVIDFT--DASTVYDNVKQATAFGMRS  133 (161)
Q Consensus       105 ~~~D-VVIDfT--~p~~~~~~~~~al~~g~~v  133 (161)
                      .+.| +|+|.|  +|+.....+...+..|...
T Consensus        81 ~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f  112 (449)
T COG2403          81 KDVDIVVLAYSDVSYEHVFRIASRVLSAGADF  112 (449)
T ss_pred             cCCCeEEEEcccCCHHHHHHHHHHHHhCCcee
Confidence            7899 999999  6777888888888887654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=93.65  E-value=0.6  Score=43.97  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=27.1

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ...-||+|+|+ |-||+.|+..+. ..|++++ ++|.
T Consensus       311 ~~i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~  344 (714)
T TIGR02437       311 KDVKQAAVLGA-GIMGGGIAYQSA-SKGTPIV-MKDI  344 (714)
T ss_pred             cccceEEEECC-chHHHHHHHHHH-hCCCeEE-EEeC
Confidence            34468999995 999999999887 5689866 6774

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=93.64  E-value=0.22  Score=43.99  Aligned_cols=113  Identities=15%  Similarity=0.072  Sum_probs=74.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eee---CCHH-HHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVM---SDLT-MVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~---~dl~-~~l~~~~~~~~~DVV  110 (161)
                      -+|.+.| +|++.+-.+..+.+..+.++.-+.+....++   .+..   ...+ +|.   .+.+ .+...+   .+-|++
T Consensus         3 ~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~---~~~~---~~~~~av~ldv~~~~~~L~~~v---~~~D~v   72 (445)
T KOG0172|consen    3 KGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAE---ALVK---GINIKAVSLDVADEELALRKEV---KPLDLV   72 (445)
T ss_pred             cceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHH---HHhc---CCCccceEEEccchHHHHHhhh---ccccee
Confidence            4799999 6999999999999999999986666322222   2211   1111 111   2222 121111   478898


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      +-.++-..+.-.++.|+.++.++|.  +.+...+.++|.+.+..+++...
T Consensus        73 iSLlP~t~h~lVaK~~i~~~~~~vt--sSyv~pe~~~L~~~~v~AG~ti~  120 (445)
T KOG0172|consen   73 ISLLPYTFHPLVAKGCIITKEDSVT--SSYVDPELEELEKAAVPAGSTIM  120 (445)
T ss_pred             eeeccchhhHHHHHHHHHhhccccc--ccccCHHHHhhhhhccCCCceEe
Confidence            8555445555677899999999764  33666778999999998877654

>PLN02572 UDP-sulfoquinovose synthase

Probab=93.62  E-value=0.11  Score=45.82  Aligned_cols=31  Identities=35%  Similarity=0.432  Sum_probs=27.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      +.||.|.|++|.+|+.+++.+.+ .|.+++++
T Consensus        47 ~k~VLVTGatGfIGs~Lv~~L~~-~G~~V~~~   77 (442)
T PLN02572         47 KKKVMVIGGDGYCGWATALHLSK-RGYEVAIV   77 (442)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCeEEEE
Confidence            47899999999999999999984 57887765

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.61  E-value=1.7  Score=36.93  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ..||+|+|+ |++|..++-.+...+-..=..++|.
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~   39 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDI   39 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            369999997 9999999998886655534558885

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.60  E-value=0.33  Score=40.23  Aligned_cols=86  Identities=12%  Similarity=0.042  Sum_probs=50.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      +|.|+|+ |.+|...++.+. .-+.+.+.++|...  .+. +.++   ..  .+++ .++...     ..+|++||++-.
T Consensus       147 ~vlV~G~-G~vG~~a~q~ak-~~G~~~v~~~~~~~--~rl-~~a~---~~--~~i~-~~~~~~-----~g~Dvvid~~G~  210 (308)
T TIGR01202       147 PDLIVGH-GTLGRLLARLTK-AAGGSPPAVWETNP--RRR-DGAT---GY--EVLD-PEKDPR-----RDYRAIYDASGD  210 (308)
T ss_pred             cEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCH--HHH-Hhhh---hc--cccC-hhhccC-----CCCCEEEECCCC
Confidence            6999995 999999887655 66888776776432  111 1111   11  1122 121111     468999999865


Q ss_pred             hhH-HHHHHHHHHcCCcEEEeCC
Q 031341          117 STV-YDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       117 ~~~-~~~~~~al~~g~~vVigtt  138 (161)
                      ... ...+......|.-+++|..
T Consensus       211 ~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       211 PSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             HHHHHHHHHhhhcCcEEEEEeec
Confidence            444 4445555556666667753

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.60  E-value=0.45  Score=40.46  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      |||+|+|++|++|..++-.+...+-..=+..+|..
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            69999997799999999888755544435577743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.60  E-value=0.34  Score=44.60  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=55.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCH--HHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl--~~~l~~~~~~~~~DVVI  111 (161)
                      .-+|.|+| +|++|+.+++.+. ..+.+++ ++|++.  ..+....    +.|.++ +.|.  .+.+.+ +.-.++|++|
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~~L~~-agi~~A~~vv  469 (601)
T PRK03659        400 KPQVIIVG-FGRFGQVIGRLLM-ANKMRIT-VLERDI--SAVNLMR----KYGYKVYYGDATQLELLRA-AGAEKAEAIV  469 (601)
T ss_pred             cCCEEEec-CchHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hCCCeEEEeeCCCHHHHHh-cCCccCCEEE
Confidence            36899999 6999999999886 5677765 666432  1222221    234443 3221  222221 0014678877


Q ss_pred             EccCc-hhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHH
Q 031341          112 DFTDA-STVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       112 DfT~p-~~~~~~~~~al~~g--~~vVigttg~~~e~~~~L~~~  151 (161)
                      -.+.- +.....+..+.+..  .+++. .+ -++++.++|.++
T Consensus       470 ~~~~d~~~n~~i~~~~r~~~p~~~Iia-Ra-~~~~~~~~L~~~  510 (601)
T PRK03659        470 ITCNEPEDTMKIVELCQQHFPHLHILA-RA-RGRVEAHELLQA  510 (601)
T ss_pred             EEeCCHHHHHHHHHHHHHHCCCCeEEE-Ee-CCHHHHHHHHhC
Confidence            44432 22334444444443  34433 22 455666666654

>PRK06179 short chain dehydrogenase; Provisional

Probab=93.54  E-value=0.16  Score=40.76  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++++..
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~-~~g~~V~~~~r   36 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLA-RAGYRVFGTSR   36 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHH-HCCCEEEEEeC
Confidence            369999999999999999987 45888776554

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=93.53  E-value=0.85  Score=35.81  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=26.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+.|.|++|.+|+.+++.+.+ .+.+++...+
T Consensus         5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~   35 (246)
T PRK12938          5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCG   35 (246)
T ss_pred             EEEEECCCChHHHHHHHHHHH-cCCEEEEEcC
Confidence            479999999999999999974 5788876554

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=93.52  E-value=0.41  Score=39.51  Aligned_cols=87  Identities=18%  Similarity=0.212  Sum_probs=52.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------eCCHHHHHhcccccCCcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-------~~dl~~~l~~~~~~~~~D  108 (161)
                      |||.|.|+ =.=|+.+++.|.+... -++.++-.  .|.......    ....++       .+++.+.+.    +.+++
T Consensus         1 m~ILvlgG-TtE~r~la~~L~~~g~-v~~sv~t~--~g~~~~~~~----~~~~~v~~G~lg~~~~l~~~l~----~~~i~   68 (249)
T PF02571_consen    1 MKILVLGG-TTEGRKLAERLAEAGY-VIVSVATS--YGGELLKPE----LPGLEVRVGRLGDEEGLAEFLR----ENGID   68 (249)
T ss_pred             CEEEEEec-hHHHHHHHHHHHhcCC-EEEEEEhh--hhHhhhccc----cCCceEEECCCCCHHHHHHHHH----hCCCc
Confidence            68999995 5668999998875554 22223321  122111000    011111       133444554    47999


Q ss_pred             EEEEccCchhH--HHHH-HHHHHcCCcEE
Q 031341          109 VVIDFTDASTV--YDNV-KQATAFGMRSV  134 (161)
Q Consensus       109 VVIDfT~p~~~--~~~~-~~al~~g~~vV  134 (161)
                      +|||+|||-+.  .+++ ..|.+.|+|.+
T Consensus        69 ~vIDATHPfA~~is~na~~a~~~~~ipyl   97 (249)
T PF02571_consen   69 AVIDATHPFAAEISQNAIEACRELGIPYL   97 (249)
T ss_pred             EEEECCCchHHHHHHHHHHHHhhcCcceE
Confidence            99999999766  2444 78899999988

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.51  E-value=0.17  Score=42.21  Aligned_cols=33  Identities=27%  Similarity=0.273  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -||.|+|+ |.+|+.++..+.. .++.=+.+++++
T Consensus       128 k~vlIlGa-GGaaraia~aL~~-~G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGA-GGAGAAVAHALLT-LGVERLTIFDVD  160 (284)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-cCCCEEEEECCC
Confidence            58999995 9999999999874 566446688865

>PRK06953 short chain dehydrogenase; Provisional

Probab=93.51  E-value=0.58  Score=36.47  Aligned_cols=31  Identities=35%  Similarity=0.425  Sum_probs=26.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~-~~G~~v~~~~   32 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYR-ADGWRVIATA   32 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHH-hCCCEEEEEE
Confidence            478999999999999999987 5689977654

>PRK08017 oxidoreductase; Provisional

Probab=93.48  E-value=1.9  Score=34.00  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=25.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +|.|.|++|.+|+.+++.+. ..|.+++.+..
T Consensus         4 ~vlVtGasg~IG~~la~~l~-~~g~~v~~~~r   34 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELK-RRGYRVLAACR   34 (256)
T ss_pred             EEEEECCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence            59999999999999999997 45788765543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.47  E-value=0.33  Score=40.43  Aligned_cols=97  Identities=12%  Similarity=0.092  Sum_probs=50.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC---CHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~---dl~~~l~~~~~~~~~DVVID  112 (161)
                      =+|.|.|++|.+|..+++.+. ..|.++++..++......+.+.+|..   .+.-++   ++.+.+.+.. ...+|+++|
T Consensus       153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~-~~gvd~v~d  227 (338)
T cd08295         153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDEKVDLLKNKLGFD---DAFNYKEEPDLDAALKRYF-PNGIDIYFD  227 (338)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHhcCCc---eeEEcCCcccHHHHHHHhC-CCCcEEEEE
Confidence            379999999999999887654 67888776655321101111112221   111111   3433332211 136899999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ++......+.+......|.-+.+|.
T Consensus       228 ~~g~~~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         228 NVGGKMLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             CCCHHHHHHHHHHhccCcEEEEecc
Confidence            8765433333333334444444553

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK05872 short chain dehydrogenase; Provisional

Probab=93.47  E-value=1.2  Score=36.52  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..|.+++.+.
T Consensus        10 k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~   40 (296)
T PRK05872         10 KVVVVTGAARGIGAELARRLH-ARGAKLALVD   40 (296)
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEe
Confidence            469999999999999999987 5678866443

>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.47  E-value=0.19  Score=42.33  Aligned_cols=96  Identities=13%  Similarity=0.070  Sum_probs=52.3

Q ss_pred             eEE-EEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCeeee---CCHHHHHhcccccCCccEEE
Q 031341           37 KVI-INGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        37 kV~-ViGa~G~mGr~i~~~l~~~~~~eLvav-vd~~~~g~~~~~~~g~~~~~~i~v~---~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |++ |.|++|-.|++.+..|..+|.++|.-. .+....|++...-..+++..-.|-.   -+++++-..  .=.++|+++
T Consensus         5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~--~F~ecDIvf   82 (361)
T KOG4777|consen    5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTAD--SFNECDIVF   82 (361)
T ss_pred             cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChh--hcccccEEE
Confidence            455 999999999999999999999998755 3323356554332222210000100   012221100  003577766


Q ss_pred             EccCc-hhHHHHHHHHHHcCCcEEE
Q 031341          112 DFTDA-STVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       112 DfT~p-~~~~~~~~~al~~g~~vVi  135 (161)
                       ++.- +-.-+.-+.+.++|.-+|.
T Consensus        83 -sgldad~ageiek~f~eag~iiVs  106 (361)
T KOG4777|consen   83 -SGLDADIAGEIEKLFAEAGTIIVS  106 (361)
T ss_pred             -ecCCchhhhhhhHHHHhcCeEEEe
Confidence             4432 3333555667777776664

>PRK07023 short chain dehydrogenase; Provisional

Probab=93.44  E-value=0.14  Score=40.40  Aligned_cols=33  Identities=21%  Similarity=0.457  Sum_probs=28.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |+++.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~~r   33 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGVAR   33 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHh-CCCEEEEEec
Confidence            57899999999999999999974 6889876543

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=93.41  E-value=0.28  Score=42.11  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=47.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      -|.|.+|+|-.|+...+ |.+..++++||++.....    ..+              +.+.       -.+|++||.-.+
T Consensus       153 tvvVSaAaGaVGsvvgQ-iAKlkG~rVVGiaGg~eK----~~~--------------l~~~-------lGfD~~idyk~~  206 (340)
T COG2130         153 TVVVSAAAGAVGSVVGQ-IAKLKGCRVVGIAGGAEK----CDF--------------LTEE-------LGFDAGIDYKAE  206 (340)
T ss_pred             EEEEEecccccchHHHH-HHHhhCCeEEEecCCHHH----HHH--------------HHHh-------cCCceeeecCcc
Confidence            48899999999997665 566999999998874310    011              1111       256666666544


Q ss_pred             hhHHHHHHHHHHcCCcEEEeCCCC
Q 031341          117 STVYDNVKQATAFGMRSVVYVPHI  140 (161)
Q Consensus       117 ~~~~~~~~~al~~g~~vVigttg~  140 (161)
                       ...+.+..+.-.|+.+..+..|-
T Consensus       207 -d~~~~L~~a~P~GIDvyfeNVGg  229 (340)
T COG2130         207 -DFAQALKEACPKGIDVYFENVGG  229 (340)
T ss_pred             -cHHHHHHHHCCCCeEEEEEcCCc
Confidence             44455555555666666666543

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=93.39  E-value=0.44  Score=45.06  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=27.6

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +...-||+|+|+ |.||+.|+..+. ..|++++ ++|.
T Consensus       332 ~~~i~~v~ViGa-G~MG~gIA~~~a-~~G~~V~-l~d~  366 (737)
T TIGR02441       332 QRPVKTLAVLGA-GLMGAGIAQVSV-DKGLKTV-LKDA  366 (737)
T ss_pred             CCcccEEEEECC-CHhHHHHHHHHH-hCCCcEE-EecC
Confidence            334468999996 999999999887 5589876 6774

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=93.36  E-value=0.24  Score=41.83  Aligned_cols=70  Identities=17%  Similarity=0.350  Sum_probs=46.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CC--c-----chhhhhcCCCCCCeeeeC--C-----HHHHHh
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG--E-----DIGMVCDMEQPLEIPVMS--D-----LTMVLG   99 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--~g--~-----~~~~~~g~~~~~~i~v~~--d-----l~~~l~   99 (161)
                      |||+++| ++.++...++.|.+. ++++++|+-...  .+  .     ++.+++   .+.++|++.  +     +.+.+.
T Consensus         1 mkIvf~G-~~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a---~~~~Ip~~~~~~~~~~~~~~~l~   75 (309)
T PRK00005          1 MRIVFMG-TPEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLA---LEHGIPVLQPEKLRDPEFLAELA   75 (309)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHH---HHcCCCEECcCCCCCHHHHHHHH
Confidence            6999999 799999999999854 899999996321  11  1     234444   356777753  2     122333


Q ss_pred             cccccCCccEEEEcc
Q 031341          100 SISQSKARAVVIDFT  114 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (161)
                      +    .++|++|-++
T Consensus        76 ~----~~~Dliv~~~   86 (309)
T PRK00005         76 A----LNADVIVVVA   86 (309)
T ss_pred             h----cCcCEEEEeh
Confidence            2    5899877554

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=93.36  E-value=0.65  Score=45.50  Aligned_cols=109  Identities=14%  Similarity=0.161  Sum_probs=63.8

Q ss_pred             ccceeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEecC----------------CCCcc
Q 031341           20 KAKRFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSH----------------SVGED   75 (161)
Q Consensus        20 ~~~~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~-----eLvavvd~~----------------~~g~~   75 (161)
                      +-.|-|..|....|.+   .||.|+|+ |..|.++++.+. ..|+     --.-++|.+                ..|+.
T Consensus       401 RYdrqi~l~G~~~Q~kL~~~kVlvvGa-GGlG~e~lknLa-l~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~  478 (1008)
T TIGR01408       401 RYDAQIAVFGDTFQQKLQNLNIFLVGC-GAIGCEMLKNFA-LMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKP  478 (1008)
T ss_pred             hhHHHHHHcCHHHHHHHhhCcEEEECC-ChHHHHHHHHHH-HhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcH
Confidence            3345566677666654   69999995 999999999987 6666     334467732                11222


Q ss_pred             hhhhh-----cCCCCCCeeee-CCH---------HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341           76 IGMVC-----DMEQPLEIPVM-SDL---------TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (161)
Q Consensus        76 ~~~~~-----g~~~~~~i~v~-~dl---------~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig  136 (161)
                      -.+.+     .+.....+..+ ..+         ++.+      ...|+||++...-.. .-.-..|..+++|+|-+
T Consensus       479 Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~------~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~  549 (1008)
T TIGR01408       479 KSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFY------EKLDVVINALDNVEARRYVDSRCLAFLKPLLES  549 (1008)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHh------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            11111     11111122111 111         1223      278999998755444 44448999999999954

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=93.34  E-value=0.99  Score=40.10  Aligned_cols=42  Identities=14%  Similarity=0.128  Sum_probs=32.9

Q ss_pred             EeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           26 SCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        26 ~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ..|...+|..   -+|.|+|+ |..|.++++.|. .+|+.=.-++|.
T Consensus         8 rLwG~~gQ~~L~~s~VlliG~-gglGsEilKNLv-L~GIg~~tIvD~   52 (425)
T cd01493           8 RLWGEHGQAALESAHVCLLNA-TATGTEILKNLV-LPGIGSFTIVDG   52 (425)
T ss_pred             HHhHHHHHHHHhhCeEEEEcC-cHHHHHHHHHHH-HcCCCeEEEECC
Confidence            3355555543   59999995 999999999997 889977778884

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function

Probab=93.30  E-value=1.2  Score=36.19  Aligned_cols=95  Identities=12%  Similarity=0.109  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc-CchhHHH
Q 031341           44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD  121 (161)
Q Consensus        44 ~G~mGr~i~~~l~~~~~~e-Lvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~  121 (161)
                      .|.-|.+++..+.+.++++ .+.+++-+.   ...++           .++.++.+..+   .+.|++|..+ +|+...+
T Consensus         5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~i---~~~Dl~I~y~lHPDl~~~   67 (217)
T PF02593_consen    5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPKI---PEADLLIAYGLHPDLTYE   67 (217)
T ss_pred             eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence            5899999999999888887 344444221   11111           24455554432   5899999877 8999999


Q ss_pred             HHHHHHHcCCcEEEeCCCCCH--HHHHHHHHHhhhcC
Q 031341          122 NVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKAS  156 (161)
Q Consensus       122 ~~~~al~~g~~vVigttg~~~--e~~~~L~~~A~~~~  156 (161)
                      .++.+.++|+..|+.-. ++.  ...+.|++.+++.+
T Consensus        68 l~~~~~e~g~kavIvp~-~~~~~g~~~~lk~~~e~~g  103 (217)
T PF02593_consen   68 LPEIAKEAGVKAVIVPS-ESPKPGLRRQLKKQLEEFG  103 (217)
T ss_pred             HHHHHHHcCCCEEEEec-CCCccchHHHHHHHHHhcC
Confidence            99999999988886433 222  33445666666644

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=93.26  E-value=1.1  Score=38.83  Aligned_cols=90  Identities=12%  Similarity=0.175  Sum_probs=48.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-eee-eCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPV-MSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~-i~v-~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |||+|+| .|.-+..+++.+.+++ ..+..+.++...|.  ....    +.. +.+ +.|.+.+++ +++..++|+++-.
T Consensus         1 ~kiliiG-~G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~d~~~l~~-~~~~~~id~vi~~   71 (423)
T TIGR00877         1 MKVLVIG-NGGREHALAWKLAQSP-LVKYVYVAPGNAGT--ARLA----KNKNVAISITDIEALVE-FAKKKKIDLAVIG   71 (423)
T ss_pred             CEEEEEC-CChHHHHHHHHHHhCC-CccEEEEECCCHHH--hhhc----ccccccCCCCCHHHHHH-HHHHhCCCEEEEC
Confidence            6999999 5888999999998753 33333334322221  1000    111 111 256665432 2334678887733


Q ss_pred             cCchhHHHHHHHHHHcCCcEE
Q 031341          114 TDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vV  134 (161)
                      ..-......+..+.+.|++++
T Consensus        72 ~e~~l~~~~~~~l~~~gi~~~   92 (423)
T TIGR00877        72 PEAPLVLGLVDALEEAGIPVF   92 (423)
T ss_pred             CchHHHHHHHHHHHHCCCeEE
Confidence            221112345556667888753

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.23  E-value=2.6  Score=36.10  Aligned_cols=34  Identities=21%  Similarity=0.166  Sum_probs=25.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      +||+|+|+ |++|+.++-.+....=..=..++|..
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~   34 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDIN   34 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcc
Confidence            58999997 99999999988544333134578853

>PRK06196 oxidoreductase; Provisional

Probab=93.23  E-value=0.59  Score=38.75  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus        27 k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R   58 (315)
T PRK06196         27 KTAIVTGGYSGLGLETTRALA-QAGAHVIVPAR   58 (315)
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeC
Confidence            479999999999999999987 46888876544

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.20  E-value=0.77  Score=42.51  Aligned_cols=104  Identities=16%  Similarity=0.252  Sum_probs=55.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---CCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~---~dl~~~l~~~~~~~~~DVV  110 (161)
                      .-+|.|+| +|++|+.+++.+. ..+.+++ ++|.+.  ..+....    +.|.++ +   ++.+ ++.+ +.-.++|++
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~-agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAG-FGRFGQIVGRLLL-SSGVKMT-VLDHDP--DHIETLR----KFGMKVFYGDATRMD-LLES-AGAAKAEVL  468 (621)
T ss_pred             cCcEEEEe-cChHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence            36899999 6999999999886 5577765 557432  1222211    234444 3   2332 2221 001367877


Q ss_pred             EEccC-chhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHH
Q 031341          111 IDFTD-ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       111 IDfT~-p~~~~~~~~~al~~g--~~vVigttg~~~e~~~~L~~~  151 (161)
                      |-.+. ++.....+..+.++.  .+++.=+  -+.+..++|.++
T Consensus       469 vv~~~d~~~n~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~  510 (621)
T PRK03562        469 INAIDDPQTSLQLVELVKEHFPHLQIIARA--RDVDHYIRLRQA  510 (621)
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC
Confidence            74553 333344445555443  3444322  445666666655

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=93.16  E-value=0.61  Score=45.68  Aligned_cols=107  Identities=10%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             eeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchh-----h
Q 031341           23 RFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIG-----M   78 (161)
Q Consensus        23 ~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~-----~   78 (161)
                      |-|+.|-..+|.+   -||.|+|+ |+.|.++++.|. ..|+.=+.++|...                .|++-.     .
T Consensus         9 RQi~l~G~eaq~kL~~s~VLIiG~-gGLG~EiaKnL~-laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~   86 (1008)
T TIGR01408         9 RQLYVLGDEAMQKMAKSNVLISGM-GGLGLEIAKNLV-LAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKK   86 (1008)
T ss_pred             hHHHhcCHHHHHHHhhCcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHH
Confidence            4455666666654   58999995 999999999997 78888888898431                111100     0


Q ss_pred             hhcCCCCCCeeee-CCH-HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcC--CcEEEeC
Q 031341           79 VCDMEQPLEIPVM-SDL-TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFG--MRSVVYV  137 (161)
Q Consensus        79 ~~g~~~~~~i~v~-~dl-~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g--~~vVigt  137 (161)
                      +..+.....+.++ .++ ++.+      .+.|+||+.+.+... ...-..|.++|  +++|.+.
T Consensus        87 L~eLNp~V~V~~~~~~l~~e~l------~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~  144 (1008)
T TIGR01408        87 LAELNPYVHVSSSSVPFNEEFL------DKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISAD  144 (1008)
T ss_pred             HHHHCCCceEEEecccCCHHHH------cCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            0011101122222 223 3344      378999987654444 45557888888  7777653

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.14  E-value=0.22  Score=38.73  Aligned_cols=32  Identities=16%  Similarity=0.342  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .++.|+|++|.+|+.+++.+.. .+.++..+ ++
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~-~R   60 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAR-EGARVVLV-GR   60 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE-cC
Confidence            6899999899999999999875 56776644 44

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=93.12  E-value=0.23  Score=43.11  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=67.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVV  110 (161)
                      ...-+.|.||+|..|+.+++.+. +.+... +...++... ..++..+|.. ....|.  -..++++.      ...+||
T Consensus         5 ~e~d~iiYGAtGy~G~lvae~l~-~~g~~~-aLAgRs~~kl~~l~~~LG~~-~~~~p~~~p~~~~~~~------~~~~VV   75 (382)
T COG3268           5 REYDIIIYGATGYAGGLVAEYLA-REGLTA-ALAGRSSAKLDALRASLGPE-AAVFPLGVPAALEAMA------SRTQVV   75 (382)
T ss_pred             cceeEEEEccccchhHHHHHHHH-HcCCch-hhccCCHHHHHHHHHhcCcc-ccccCCCCHHHHHHHH------hcceEE
Confidence            34678999999999999999987 556655 233332100 1122333332 111122  12344444      378999


Q ss_pred             EEccCchhH--HHHHHHHHHcCCcEEEeCCC-CC-HHHHHHH-HHHhhhcCee
Q 031341          111 IDFTDASTV--YDNVKQATAFGMRSVVYVPH-IQ-LETVSAL-SAFCDKASMV  158 (161)
Q Consensus       111 IDfT~p~~~--~~~~~~al~~g~~vVigttg-~~-~e~~~~L-~~~A~~~~Vv  158 (161)
                      +.+.-|-..  .+.+..|+.+|.+-.= -|| .. -|+...+ .+-|++.++.
T Consensus        76 lncvGPyt~~g~plv~aC~~~GTdY~D-iTGEi~~fe~~i~~yh~~A~~~Ga~  127 (382)
T COG3268          76 LNCVGPYTRYGEPLVAACAAAGTDYAD-ITGEIMFFENSIDLYHAQAADAGAR  127 (382)
T ss_pred             EeccccccccccHHHHHHHHhCCCeee-ccccHHHHHHHHHHHHHHHHhcCCE
Confidence            988888766  4899999999999652 233 11 1333333 5556666543

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.11  E-value=0.41  Score=39.67  Aligned_cols=95  Identities=14%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVID  112 (161)
                      =+|.|.|++|.+|...++.+. .-+. +++++.++......+.+.+|..   .+..+  .++.+.+.++. ...+|+++|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~~-~~gvd~vid  230 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQLLKSELGFD---AAINYKTDNVAERLRELC-PEGVDVYFD  230 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHhcCCc---EEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence            479999999999999887655 6687 7776655321101111112221   11111  23433332211 136999999


Q ss_pred             ccCchhHHHHHHHHHH-cCCcEEEe
Q 031341          113 FTDASTVYDNVKQATA-FGMRSVVY  136 (161)
Q Consensus       113 fT~p~~~~~~~~~al~-~g~~vVig  136 (161)
                      ++..... +.+..+++ .|.-+.+|
T Consensus       231 ~~g~~~~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         231 NVGGEIS-DTVISQMNENSHIILCG  254 (345)
T ss_pred             CCCcHHH-HHHHHHhccCCEEEEEe
Confidence            8754443 44444444 44444455

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=93.07  E-value=1.4  Score=38.25  Aligned_cols=89  Identities=13%  Similarity=0.178  Sum_probs=48.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |||+|+| +|.-...+++.+.++++...+.+ ++...|..   ...   + .+.+ +.|.+++++ ++++.++|+++-.+
T Consensus         1 ~kvliiG-~G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~~---~~~---~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~   70 (420)
T PRK00885          1 MKVLVIG-SGGREHALAWKLAQSPLVEKVYV-APGNAGTA---LLA---E-NVVIDVTDIEALVA-FAKEEGIDLTVVGP   70 (420)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEE-eCCCHHHH---hhc---c-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            6999999 58666678888877777654444 43222210   000   1 1111 256666532 23346799887322


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031341          115 DASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vV  134 (161)
                      -.......+..+.+.|++++
T Consensus        71 e~~l~~~~~~~l~~~gi~~~   90 (420)
T PRK00885         71 EAPLVAGIVDAFRAAGLPIF   90 (420)
T ss_pred             chHHHHHHHHHHHHCCCcEE
Confidence            21222344556667888854

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.06  E-value=1.2  Score=33.90  Aligned_cols=80  Identities=18%  Similarity=0.073  Sum_probs=45.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -||.|+|+ |++|...++.+. ..+.+++ +++++. ..++.++.      .+. ....+++..-     .+.|+||-+|
T Consensus        14 ~~vlVvGG-G~va~rka~~Ll-~~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~dl-----~~a~lViaaT   78 (157)
T PRK06719         14 KVVVIIGG-GKIAYRKASGLK-DTGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDDI-----KDAHLIYAAT   78 (157)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhcC-----CCceEEEECC
Confidence            48999995 999999999887 4677877 445432 12222211      111 1233333322     3789888677


Q ss_pred             CchhHHHHHHHHHHcC
Q 031341          115 DASTVYDNVKQATAFG  130 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g  130 (161)
                      .-+.....+..+.+.+
T Consensus        79 ~d~e~N~~i~~~a~~~   94 (157)
T PRK06719         79 NQHAVNMMVKQAAHDF   94 (157)
T ss_pred             CCHHHHHHHHHHHHHC
Confidence            5555544443333334

>PRK12829 short chain dehydrogenase; Provisional

Probab=93.03  E-value=0.82  Score=36.16  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~-~~g~~V~~~~r   43 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFA-EAGARVHVCDV   43 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHH-HCCCEEEEEeC
Confidence            689999999999999999997 56788665443

>PRK07589 ornithine cyclodeaminase; Validated

Probab=93.02  E-value=0.29  Score=42.28  Aligned_cols=94  Identities=13%  Similarity=0.061  Sum_probs=60.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+++|+| +|..++.+++.+.....++=+-+++++... ....+.... ...++.+.++.++++.      ++|+|+=+|
T Consensus       130 ~~l~iiG-aG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-~~~~v~~~~~~~~av~------~ADIIvtaT  201 (346)
T PRK07589        130 RTMALIG-NGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-PGLRIVACRSVAEAVE------GADIITTVT  201 (346)
T ss_pred             cEEEEEC-CcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-cCCcEEEeCCHHHHHh------cCCEEEEec
Confidence            5799999 599999999999887788888888865321 111111110 0134556799999985      799999555


Q ss_pred             CchhHHHHH-HHHHHcCCcEE-EeC
Q 031341          115 DASTVYDNV-KQATAFGMRSV-VYV  137 (161)
Q Consensus       115 ~p~~~~~~~-~~al~~g~~vV-igt  137 (161)
                      +.....+.+ ...++.|.||. +|.
T Consensus       202 ~S~~~~Pvl~~~~lkpG~hV~aIGs  226 (346)
T PRK07589        202 ADKTNATILTDDMVEPGMHINAVGG  226 (346)
T ss_pred             CCCCCCceecHHHcCCCcEEEecCC
Confidence            322211222 24568899876 453

>PRK09186 flagellin modification protein A; Provisional

Probab=92.99  E-value=0.83  Score=36.03  Aligned_cols=31  Identities=35%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -+|.|.|++|++|+.+++.+. ..+.+++...
T Consensus         5 k~vlItGas~giG~~~a~~l~-~~g~~v~~~~   35 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAIL-EAGGIVIAAD   35 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEe
Confidence            469999999999999999997 5688877664

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.96  E-value=2  Score=34.10  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         8 k~~lItGas~gIG~~~a~~l~-~~G~~v~~~~~   39 (255)
T PRK06463          8 KVALITGGTRGIGRAIAEAFL-REGAKVAVLYN   39 (255)
T ss_pred             CEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence            479999999999999999997 45788775443

>PRK06057 short chain dehydrogenase; Provisional

Probab=92.96  E-value=1.1  Score=35.67  Aligned_cols=31  Identities=26%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -+|.|+|++|.+|+.+++.+. ..+.+++.+.
T Consensus         8 ~~vlItGasggIG~~~a~~l~-~~G~~v~~~~   38 (255)
T PRK06057          8 RVAVITGGGSGIGLATARRLA-AEGATVVVGD   38 (255)
T ss_pred             CEEEEECCCchHHHHHHHHHH-HcCCEEEEEe
Confidence            479999999999999999998 4578876553

>PRK12742 oxidoreductase; Provisional

Probab=92.95  E-value=0.75  Score=35.86  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++....
T Consensus         7 k~vlItGasggIG~~~a~~l~-~~G~~v~~~~~   38 (237)
T PRK12742          7 KKVLVLGGSRGIGAAIVRRFV-TDGANVRFTYA   38 (237)
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEEecC
Confidence            479999999999999999987 56788775543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=92.80  E-value=0.21  Score=42.21  Aligned_cols=94  Identities=9%  Similarity=-0.004  Sum_probs=51.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+++|+| +|..++.+++.+...-.++=+-++++.... ....+.+... ...+...+|.++++.      ++|+|+=+|
T Consensus       129 ~~l~viG-aG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~------~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIG-AGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVR------GADIIVTAT  200 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHT------TSSEEEE--
T ss_pred             ceEEEEC-CCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhcc------cCCEEEEcc
Confidence            4799999 599999999999886668889999975311 1111111110 234556789999985      799999555


Q ss_pred             CchhHHHHH-HHHHHcCCcEE-EeC
Q 031341          115 DASTVYDNV-KQATAFGMRSV-VYV  137 (161)
Q Consensus       115 ~p~~~~~~~-~~al~~g~~vV-igt  137 (161)
                      +.....+.+ ...++.|.|+. +|.
T Consensus       201 ~s~~~~P~~~~~~l~~g~hi~~iGs  225 (313)
T PF02423_consen  201 PSTTPAPVFDAEWLKPGTHINAIGS  225 (313)
T ss_dssp             --SSEEESB-GGGS-TT-EEEE-S-
T ss_pred             CCCCCCccccHHHcCCCcEEEEecC
Confidence            322200111 23567888876 443

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.79  E-value=0.99  Score=40.45  Aligned_cols=87  Identities=23%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC--HHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d--l~~~l~~~~~~~~~DVVID  112 (161)
                      +.||+|+| .|+.|+..++.+. ..+.++. +.|....-...... .. ...++.+...  ..+-+      ..+|+|| 
T Consensus         7 ~~kv~V~G-LG~sG~a~a~~L~-~~G~~v~-v~D~~~~~~~~~~~-~~-~~~~i~~~~g~~~~~~~------~~~d~vV-   74 (448)
T COG0771           7 GKKVLVLG-LGKSGLAAARFLL-KLGAEVT-VSDDRPAPEGLAAQ-PL-LLEGIEVELGSHDDEDL------AEFDLVV-   74 (448)
T ss_pred             CCEEEEEe-cccccHHHHHHHH-HCCCeEE-EEcCCCCccchhhh-hh-hccCceeecCccchhcc------ccCCEEE-
Confidence            57999999 7999999999887 5566654 66632211111111 00 0234443311  11222      3789888 


Q ss_pred             ccC--chhHHHHHHHHHHcCCcEE
Q 031341          113 FTD--ASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       113 fT~--p~~~~~~~~~al~~g~~vV  134 (161)
                      .|+  |.. .+.+..|.+.|++++
T Consensus        75 ~SPGi~~~-~p~v~~A~~~gi~i~   97 (448)
T COG0771          75 KSPGIPPT-HPLVEAAKAAGIEII   97 (448)
T ss_pred             ECCCCCCC-CHHHHHHHHcCCcEE
Confidence            662  222 236677777777765

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=92.78  E-value=0.5  Score=39.89  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~   69 (161)
                      +||+|+|++|..|..++..+...+-. +|+. +|+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~l-vd~   34 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINL-ISR   34 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EEC
Confidence            68999998899999999998866543 4554 453

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.77  E-value=0.75  Score=32.29  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCC---HHHHHhcccccCCccEEEEc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD---LTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~d---l~~~l~~~~~~~~~DVVIDf  113 (161)
                      |.|+| .|++|+.+++.+.+ .+.+++ ++|.+.  ....++.    +.++.+ +.|   .+.+ .+. .-.++|.+|-.
T Consensus         1 vvI~G-~g~~~~~i~~~L~~-~~~~vv-vid~d~--~~~~~~~----~~~~~~i~gd~~~~~~l-~~a-~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKE-GGIDVV-VIDRDP--ERVEELR----EEGVEVIYGDATDPEVL-ERA-GIEKADAVVIL   69 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHH-TTSEEE-EEESSH--HHHHHHH----HTTSEEEES-TTSHHHH-HHT-TGGCESEEEEE
T ss_pred             eEEEc-CCHHHHHHHHHHHh-CCCEEE-EEECCc--HHHHHHH----hcccccccccchhhhHH-hhc-CccccCEEEEc
Confidence            67999 69999999999987 665665 555332  1111111    122322 322   2222 110 01367877755


Q ss_pred             cCchhH-HHHHHHHHH-cC-CcEEEeCCCCCHHHHHHHHHH
Q 031341          114 TDASTV-YDNVKQATA-FG-MRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       114 T~p~~~-~~~~~~al~-~g-~~vVigttg~~~e~~~~L~~~  151 (161)
                      |.-+.. ...+..+.+ ++ .+++.-.  .+++..+.|.++
T Consensus        70 ~~~d~~n~~~~~~~r~~~~~~~ii~~~--~~~~~~~~l~~~  108 (116)
T PF02254_consen   70 TDDDEENLLIALLARELNPDIRIIARV--NDPENAELLRQA  108 (116)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSEEEEEE--SSHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHC
Confidence            543333 344455544 33 4554422  455665666553

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=92.73  E-value=0.96  Score=39.49  Aligned_cols=104  Identities=16%  Similarity=0.161  Sum_probs=64.3

Q ss_pred             ccccccccee----EEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 031341           15 ISQNVKAKRF----ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (161)
Q Consensus        15 ~~~~~~~~~~----~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v   90 (161)
                      -++.+|+-+|    ..||+=.+-   -++|+| +|++|+++++.+. .=++.+++.-+...  .+.++      ..|+..
T Consensus       125 A~~s~k~g~wnr~~~~G~el~GK---TLgvlG-~GrIGseVA~r~k-~~gm~vI~~dpi~~--~~~~~------a~gvq~  191 (406)
T KOG0068|consen  125 ASASMKEGKWNRVKYLGWELRGK---TLGVLG-LGRIGSEVAVRAK-AMGMHVIGYDPITP--MALAE------AFGVQL  191 (406)
T ss_pred             hheeeecCceeecceeeeEEecc---EEEEee-cccchHHHHHHHH-hcCceEEeecCCCc--hHHHH------hcccee
Confidence            3444555444    345554433   389999 8999999999876 66777665444221  12222      334443


Q ss_pred             eCCHHHHHhcccccCCccEEEEcc--CchhH---HHHHHHHHHcCCcEEEeCC
Q 031341           91 MSDLTMVLGSISQSKARAVVIDFT--DASTV---YDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVVIDfT--~p~~~---~~~~~~al~~g~~vVigtt  138 (161)
                       .+++|++.      .+|-+---+  +|++.   .+...+.++.|+.+|--.-
T Consensus       192 -vsl~Eil~------~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aR  237 (406)
T KOG0068|consen  192 -VSLEEILP------KADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVAR  237 (406)
T ss_pred             -eeHHHHHh------hcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecC
Confidence             48999985      789766444  34332   3566788899999875443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=92.72  E-value=0.66  Score=34.16  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------CcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEE
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------GEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~------g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |+|+|+ |.||..++-.+.+ .+.++.-+..+...      |..+....+-. ....+. ..+..+..      ..+|+|
T Consensus         1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~D~v   71 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSRSPRLEAIKEQGLTITGPDGDE-TVQPPIVISAPSADA------GPYDLV   71 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHH-TTCEEEEEESHHHHHHHHHHCEEEEETTEEE-EEEEEEEESSHGHHH------STESEE
T ss_pred             CEEECc-CHHHHHHHHHHHH-CCCceEEEEccccHHhhhheeEEEEecccce-ecccccccCcchhcc------CCCcEE
Confidence            689995 9999999999976 88887766654310      10000000000 001111 12221222      489999


Q ss_pred             EEccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          111 IDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       111 IDfT~p~~~~~~~~~---al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      |-++-.....+.+..   .+..+.++|+---|+..+  +.|.+.-.+..|
T Consensus        72 iv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~--~~l~~~~~~~~v  119 (151)
T PF02558_consen   72 IVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNE--EVLAEYFPRPRV  119 (151)
T ss_dssp             EE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHH--HHHHCHSTGSGE
T ss_pred             EEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcH--HHHHHHcCCCcE
Confidence            977754444444433   333333566666677644  345555433333

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08278 short chain dehydrogenase; Provisional

Probab=92.69  E-value=1.4  Score=35.58  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         7 k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r   38 (273)
T PRK08278          7 KTLFITGASRGIGLAIALRAA-RDGANIVIAAK   38 (273)
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEec
Confidence            368999999999999999997 45788776644

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=92.68  E-value=0.98  Score=38.69  Aligned_cols=97  Identities=12%  Similarity=0.131  Sum_probs=65.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -.|.|..|+.|.+..++-.|. .....+++++-+..+  .+..+-+|.  -..+.-|++++++-.     ...-|+|||+
T Consensus       137 ~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N--~~Fve~lg~--Yd~V~~Yd~i~~l~~-----~~~~v~VDfa  207 (314)
T PF11017_consen  137 AQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARN--VAFVESLGC--YDEVLTYDDIDSLDA-----PQPVVIVDFA  207 (314)
T ss_pred             cEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcc--hhhhhccCC--ceEEeehhhhhhccC-----CCCEEEEECC
Confidence            468999999999999999998 789999999998543  222233333  234566888888754     3677999999


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPHIQ  141 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg~~  141 (161)
                      -...+...+..-+..  ...+.+|-|.++
T Consensus       208 G~~~~~~~Lh~~l~d~l~~~~~VG~th~~  236 (314)
T PF11017_consen  208 GNGEVLAALHEHLGDNLVYSCLVGATHWD  236 (314)
T ss_pred             CCHHHHHHHHHHHhhhhhEEEEEEccCcc
Confidence            665554433322222  245668877553

>PLN02740 Alcohol dehydrogenase-like

Probab=92.66  E-value=0.68  Score=39.55  Aligned_cols=94  Identities=15%  Similarity=0.146  Sum_probs=50.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeee-eC----CHHHHHhcccccCCccEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS----DLTMVLGSISQSKARAVV  110 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~e-Lvavvd~~~~g~~~~~~~g~~~~~~i~v-~~----dl~~~l~~~~~~~~~DVV  110 (161)
                      +|.|+|+ |.+|...++.+. .-+.+ ++++ ++.....+...-+|.    +..+ +.    ++.+.+.++.. ..+|++
T Consensus       201 ~VlV~G~-G~vG~~a~q~ak-~~G~~~Vi~~-~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~v~~~~~-~g~dvv  272 (381)
T PLN02740        201 SVAIFGL-GAVGLAVAEGAR-ARGASKIIGV-DINPEKFEKGKEMGI----TDFINPKDSDKPVHERIREMTG-GGVDYS  272 (381)
T ss_pred             EEEEECC-CHHHHHHHHHHH-HCCCCcEEEE-cCChHHHHHHHHcCC----cEEEecccccchHHHHHHHHhC-CCCCEE
Confidence            7999995 999999888765 56774 5544 432111111111221    1111 11    13332222111 269999


Q ss_pred             EEccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          111 IDFTDASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      +|++-.......+..++..  |.-+++|.+
T Consensus       273 id~~G~~~~~~~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        273 FECAGNVEVLREAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             EECCCChHHHHHHHHhhhcCCCEEEEEccC
Confidence            9999754455555455544  666777764

>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated

Probab=92.66  E-value=0.74  Score=40.63  Aligned_cols=85  Identities=12%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHH---HHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~---~l~~~~~~~~~DVV  110 (161)
                      -|+.|+| +|.-|..+.+.+.++  .+++++|.++.+....   .      -.|+|+..+.++   .+.    +.++|-|
T Consensus       125 rrvLIIG-ag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~---~------i~gvpVlG~~~dl~~~v~----~~~Id~V  190 (442)
T TIGR03013       125 RRILVLG-TGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA---Y------VPSEHVIENGDGLVEYVL----RHRIDEI  190 (442)
T ss_pred             CcEEEEE-CCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc---c------cCCCcccCCHHHHHHHHH----hCCCCEE
Confidence            4799999 599999995544333  4689999996321111   1      235677665544   444    3678987


Q ss_pred             EEccCchhH----HHHHHHHHHcCCcEEE
Q 031341          111 IDFTDASTV----YDNVKQATAFGMRSVV  135 (161)
Q Consensus       111 IDfT~p~~~----~~~~~~al~~g~~vVi  135 (161)
                      + .+.|...    .+.+..+.+.|+++.+
T Consensus       191 i-IAlp~~~~~~~~~~l~~~~~~gv~V~i  218 (442)
T TIGR03013       191 V-IALDERRGSLPVDELLECKLSGIEVVD  218 (442)
T ss_pred             E-EECchhhcchHHHHHHHHHhCCCEEEE
Confidence            7 4545433    2346677788888764

Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.60  E-value=0.55  Score=39.52  Aligned_cols=87  Identities=8%  Similarity=0.052  Sum_probs=46.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +|.|.|+ |.+|...+..+.. ..+.++++ +++.....+....+      +...  .+++..+.    ..+|++||++-
T Consensus       166 ~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~-~~~~~~k~~~a~~~------~~~~--~~~~~~~~----~g~d~viD~~G  231 (341)
T cd08237         166 VIGVWGD-GNLGYITALLLKQIYPESKLVV-FGKHQEKLDLFSFA------DETY--LIDDIPED----LAVDHAFECVG  231 (341)
T ss_pred             EEEEECC-CHHHHHHHHHHHHhcCCCcEEE-EeCcHhHHHHHhhc------Ccee--ehhhhhhc----cCCcEEEECCC
Confidence            6999995 9999998887765 34456554 44322111111111      1111  11222221    35899999995


Q ss_pred             c---hhHHHHHHHHHHc-CCcEEEeC
Q 031341          116 A---STVYDNVKQATAF-GMRSVVYV  137 (161)
Q Consensus       116 p---~~~~~~~~~al~~-g~~vVigt  137 (161)
                      .   ....+.+..+++. |.-+++|.
T Consensus       232 ~~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         232 GRGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             CCccHHHHHHHHHhCcCCcEEEEEee
Confidence            2   2334444444444 55555664

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.51  E-value=1.1  Score=42.52  Aligned_cols=83  Identities=18%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             eeEEEEcCCCHHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i-~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -+|.|+| .|+.|... ++.+ ...|.++. +.|.... ....++    .+.|+.++. ...+.+      ..+|+|| .
T Consensus         5 ~~i~viG-~G~sG~salA~~L-~~~G~~V~-~sD~~~~-~~~~~L----~~~gi~~~~g~~~~~~------~~~d~vV-~   69 (809)
T PRK14573          5 LFYHFIG-IGGIGMSALAHIL-LDRGYSVS-GSDLSEG-KTVEKL----KAKGARFFLGHQEEHV------PEDAVVV-Y   69 (809)
T ss_pred             ceEEEEE-ecHHhHHHHHHHH-HHCCCeEE-EECCCCC-hHHHHH----HHCCCEEeCCCCHHHc------CCCCEEE-E
Confidence            3699999 59999998 5554 58899865 5774321 122222    134666642 222334      2689888 5


Q ss_pred             cC--chhHHHHHHHHHHcCCcEE
Q 031341          114 TD--ASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       114 T~--p~~~~~~~~~al~~g~~vV  134 (161)
                      |+  |.. .+.+..|.+.|++++
T Consensus        70 SpgI~~~-~p~~~~a~~~gi~v~   91 (809)
T PRK14573         70 SSSISKD-NVEYLSAKSRGNRLV   91 (809)
T ss_pred             CCCcCCC-CHHHHHHHHCCCcEE
Confidence            52  332 344556667777765

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=92.50  E-value=0.74  Score=36.82  Aligned_cols=32  Identities=28%  Similarity=0.527  Sum_probs=26.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++.|.|+++.+|+.+++.+. ..+.+++.+.++
T Consensus        10 ~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~~   41 (260)
T PRK08416         10 TLVISGGTRGIGKAIVYEFA-QSGVNIAFTYNS   41 (260)
T ss_pred             EEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            68899999999999999998 568887765443

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.48  E-value=1.5  Score=38.20  Aligned_cols=84  Identities=21%  Similarity=0.137  Sum_probs=51.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -||.|+| .|+.|+..++.+. ..|.++. +.|.... ....+.+    +.++.++.  +....+      ...|++| .
T Consensus         7 ~~i~v~G-~G~sG~s~~~~l~-~~G~~v~-~~D~~~~-~~~~~~l----~~g~~~~~~~~~~~~~------~~~d~vv-~   71 (438)
T PRK03806          7 KKVVIIG-LGLTGLSCVDFFL-ARGVTPR-VIDTRIT-PPGLDKL----PENVERHTGSLNDEWL------LAADLIV-A   71 (438)
T ss_pred             CEEEEEe-eCHHHHHHHHHHH-HCCCeEE-EEcCCCC-chhHHHH----hcCCEEEeCCCCHHHh------cCCCEEE-E
Confidence            4799999 5999999998654 6788765 4774321 1111111    12555532  122333      2678877 5


Q ss_pred             cC--chhHHHHHHHHHHcCCcEEE
Q 031341          114 TD--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       114 T~--p~~~~~~~~~al~~g~~vVi  135 (161)
                      ++  |.. .+.+..|.++|++++.
T Consensus        72 spgi~~~-~~~~~~a~~~g~~v~~   94 (438)
T PRK03806         72 SPGIALA-HPSLSAAADAGIEIVG   94 (438)
T ss_pred             CCCCCCC-CHHHHHHHHCCCeEEE
Confidence            53  333 5778888899998654

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=92.47  E-value=0.81  Score=39.55  Aligned_cols=35  Identities=14%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS   71 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~   71 (161)
                      .-||.|+|+ |.||+.+++.+.+ .+..=+-++.++.
T Consensus       174 ~k~vLvIGa-Gem~~l~a~~L~~-~g~~~i~v~nRt~  208 (338)
T PRK00676        174 KASLLFIGY-SEINRKVAYYLQR-QGYSRITFCSRQQ  208 (338)
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence            359999995 9999999999985 4555455666653

>PRK07577 short chain dehydrogenase; Provisional

Probab=92.47  E-value=0.27  Score=38.27  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         4 k~vlItG~s~~iG~~ia~~l~-~~G~~v~~~~r   35 (234)
T PRK07577          4 RTVLVTGATKGIGLALSLRLA-NLGHQVIGIAR   35 (234)
T ss_pred             CEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeC
Confidence            368999999999999999987 56788876654

>PRK06138 short chain dehydrogenase; Provisional

Probab=92.47  E-value=0.59  Score=36.71  Aligned_cols=32  Identities=31%  Similarity=0.338  Sum_probs=26.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -++.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         6 k~~lItG~sg~iG~~la~~l~~-~G~~v~~~~r   37 (252)
T PRK06138          6 RVAIVTGAGSGIGRATAKLFAR-EGARVVVADR   37 (252)
T ss_pred             cEEEEeCCCchHHHHHHHHHHH-CCCeEEEecC
Confidence            3799999999999999999985 5788776654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.42  E-value=0.81  Score=40.61  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=66.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhh-hhcCCCCCCeeeeCCHHHHHhc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGM-VCDMEQPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------~~g~------~~~~-~~g~~~~~~i~v~~dl~~~l~~  100 (161)
                      ..+|+|+| .|++|--++-+.. ..|++++|+ |.+       ..|+      +..+ +...-+......++|.+++-  
T Consensus         9 ~~~I~ViG-LGYVGLPlA~~fA-~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~--   83 (436)
T COG0677           9 SATIGVIG-LGYVGLPLAAAFA-SAGFKVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK--   83 (436)
T ss_pred             ceEEEEEc-cccccHHHHHHHH-HcCCceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc--
Confidence            38999999 8999999988775 778998864 421       1121      1111 00000123356677777763  


Q ss_pred             ccccCCccEEEEcc-Cc------------hhHHHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHH
Q 031341          101 ISQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSALSA  150 (161)
Q Consensus       101 ~~~~~~~DVVIDfT-~p------------~~~~~~~~~al~~g~~vVigtt---g~~~e~~~~L~~  150 (161)
                           .+|++|.+- +|            ..+.+.+...|+.|--||++.|   |-+++...-|.+
T Consensus        84 -----~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle  144 (436)
T COG0677          84 -----ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE  144 (436)
T ss_pred             -----cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence                 689888553 22            1344566788999999999976   556555554444

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.39  E-value=1.7  Score=38.69  Aligned_cols=85  Identities=21%  Similarity=0.116  Sum_probs=49.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Cc-chhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GE-DIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~-~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVID  112 (161)
                      -||+|+| .|+-|+..++.+. ..+.+++ +.|.... .. ...++.    +.+..++. ..++.+.      ++|+|| 
T Consensus         9 ~~v~v~G-~G~sG~~~~~~l~-~~g~~v~-~~d~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~d~vV-   74 (468)
T PRK04690          9 RRVALWG-WGREGRAAYRALR-AHLPAQA-LTLFCNAVEAREVGALA----DAALLVETEASAQRLA------AFDVVV-   74 (468)
T ss_pred             CEEEEEc-cchhhHHHHHHHH-HcCCEEE-EEcCCCcccchHHHHHh----hcCEEEeCCCChHHcc------CCCEEE-
Confidence            3799999 5999999999876 6778755 4663211 11 111211    22222222 2233443      689888 


Q ss_pred             ccC--chhHHHHHHHHHHcCCcEEE
Q 031341          113 FTD--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       113 fT~--p~~~~~~~~~al~~g~~vVi  135 (161)
                      .|+  |. ..+.+.+|.+.|++++.
T Consensus        75 ~SpgI~~-~~p~~~~a~~~~i~i~~   98 (468)
T PRK04690         75 KSPGISP-YRPEALAAAARGTPFIG   98 (468)
T ss_pred             ECCCCCC-CCHHHHHHHHcCCcEEE
Confidence            553  33 34566777778888655

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=92.38  E-value=1.3  Score=33.40  Aligned_cols=104  Identities=14%  Similarity=0.175  Sum_probs=59.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc--
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT--  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT--  114 (161)
                      +|+++.=+|.+|..++..+. ..++-+..++..-+             +.++    ++.++++.+..++...+++-+-  
T Consensus         3 ~valisQSG~~~~~~~~~~~-~~g~g~s~~vs~Gn-------------~~dv----~~~d~l~~~~~D~~t~~I~ly~E~   64 (138)
T PF13607_consen    3 GVALISQSGALGTAILDWAQ-DRGIGFSYVVSVGN-------------EADV----DFADLLEYLAEDPDTRVIVLYLEG   64 (138)
T ss_dssp             SEEEEES-HHHHHHHHHHHH-HTT-EESEEEE-TT--------------SSS-----HHHHHHHHCT-SS--EEEEEES-
T ss_pred             CEEEEECCHHHHHHHHHHHH-HcCCCeeEEEEeCc-------------cccC----CHHHHHHHHhcCCCCCEEEEEccC
Confidence            57888889999999999876 55787776666311             1111    3444444333355666666443  


Q ss_pred             --CchhHHHHHHHHHHcCCcEEEeCCCCCH--------------HHHHHHHHHhhhcCeee
Q 031341          115 --DASTVYDNVKQATAFGMRSVVYVPHIQL--------------ETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 --~p~~~~~~~~~al~~g~~vVigttg~~~--------------e~~~~L~~~A~~~~Vv~  159 (161)
                        .|....+.++.+..+ ||||+=++|-++              -..+...++.++.+|+.
T Consensus        65 ~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~  124 (138)
T PF13607_consen   65 IGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVR  124 (138)
T ss_dssp             -S-HHHHHHHHHHHCCC-S-EEEEE---------------------HHHHHHHHHHCTEEE
T ss_pred             CCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceE
Confidence              577777888877777 999976655322              23456777888888775

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.36  E-value=0.81  Score=38.47  Aligned_cols=93  Identities=18%  Similarity=0.150  Sum_probs=49.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVI  111 (161)
                      =+|.|.|+ |.+|...++.+. ..+.+++++..+.  ....+..+-+|..    ...+  .++++...    ...+|++|
T Consensus       174 ~~vlI~G~-G~vG~~a~q~ak-~~G~~vi~~~~~~~~~~~~~~~~~~Ga~----~v~~~~~~~~~~~~----~~~~d~vi  243 (355)
T cd08230         174 RRALVLGA-GPIGLLAALLLR-LRGFEVYVLNRRDPPDPKADIVEELGAT----YVNSSKTPVAEVKL----VGEFDLII  243 (355)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCE----EecCCccchhhhhh----cCCCCEEE
Confidence            37999995 999999887655 5678876654321  1111111212211    1111  12222111    14689999


Q ss_pred             EccCchhHH-HHHHHHHHcCCcEEEeCC
Q 031341          112 DFTDASTVY-DNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       112 DfT~p~~~~-~~~~~al~~g~~vVigtt  138 (161)
                      |++...... ..+......|.-+.+|.+
T Consensus       244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         244 EATGVPPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence            999644343 444444455555567764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=92.36  E-value=0.36  Score=40.88  Aligned_cols=64  Identities=19%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+|.|+||-+|+.+...+. ..|.++..+..+....   ....    ...+...+.+++...     -.+|+||..+
T Consensus         1 IliTGgTGlIG~~L~~~L~-~~gh~v~iltR~~~~~---~~~~----~~~v~~~~~~~~~~~-----~~~DavINLA   64 (297)
T COG1090           1 ILITGGTGLIGRALTARLR-KGGHQVTILTRRPPKA---SQNL----HPNVTLWEGLADALT-----LGIDAVINLA   64 (297)
T ss_pred             CeEeccccchhHHHHHHHH-hCCCeEEEEEcCCcch---hhhc----Cccccccchhhhccc-----CCCCEEEECC
Confidence            5789999999999999875 7789999888754311   1111    111222244455443     2699999876

>PRK07063 short chain dehydrogenase; Provisional

Probab=92.25  E-value=1.9  Score=34.26  Aligned_cols=31  Identities=32%  Similarity=0.330  Sum_probs=25.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         8 k~vlVtGas~gIG~~~a~~l~-~~G~~vv~~~   38 (260)
T PRK07063          8 KVALVTGAAQGIGAAIARAFA-REGAAVALAD   38 (260)
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEe
Confidence            368999999999999999998 5678876543

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=92.25  E-value=1.6  Score=38.92  Aligned_cols=32  Identities=9%  Similarity=0.280  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ..|||+| .|-||+.++-.+. +.++. |+|++++
T Consensus         4 ~~iGviG-LaVMG~NLaLNi~-~~G~~-VavyNRt   35 (473)
T COG0362           4 ADIGVIG-LAVMGSNLALNIA-DHGYT-VAVYNRT   35 (473)
T ss_pred             cceeeEe-hhhhhHHHHHHHH-hcCce-EEEEeCC
Confidence            5699999 8999999999986 77887 4577764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.23  E-value=0.66  Score=39.08  Aligned_cols=34  Identities=24%  Similarity=0.183  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      |||+|+|+ |.+|..++..+....-..-+.++|+.
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            58999995 99999999988755434556688854

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06523 short chain dehydrogenase; Provisional

Probab=92.21  E-value=2.3  Score=33.72  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=27.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus        10 k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~r   41 (260)
T PRK06523         10 KRALVTGGTKGIGAATVARLL-EAGARVVTTAR   41 (260)
T ss_pred             CEEEEECCCCchhHHHHHHHH-HCCCEEEEEeC
Confidence            579999999999999999997 45888776544

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=92.19  E-value=0.31  Score=40.34  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=24.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -+|.|+|+ |++|+.++..+.. .++.=+-+++++
T Consensus       124 k~vlVlGa-Gg~a~ai~~aL~~-~g~~~V~v~~R~  156 (278)
T PRK00258        124 KRILILGA-GGAARAVILPLLD-LGVAEITIVNRT  156 (278)
T ss_pred             CEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEEeCC
Confidence            58999995 9999999999984 454335566654

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=92.16  E-value=0.93  Score=36.39  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=26.4

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +.|.|++|.+|+.+++.+. ..+.+++...++
T Consensus         4 ~lITGas~gIG~~~a~~l~-~~G~~V~~~~~~   34 (267)
T TIGR02685         4 AVVTGAAKRIGSSIAVALH-QEGYRVVLHYHR   34 (267)
T ss_pred             EEEeCCCCcHHHHHHHHHH-hCCCeEEEEcCC
Confidence            7899999999999999997 578888866543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=92.13  E-value=0.48  Score=40.07  Aligned_cols=95  Identities=17%  Similarity=0.146  Sum_probs=51.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhhcCCCCCCeeeeC---CHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~-~~~~~g~~~~~~i~v~~---dl~~~l~~~~~~~~~DVVI  111 (161)
                      =+|.|.|++|.+|...++.+. ..+.+++++..+... .+ +...+|..   .+.-+.   ++.+.+.++. ...+|+++
T Consensus       160 ~~VlV~GaaG~vG~~aiqlAk-~~G~~Vi~~~~~~~k-~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~-~~gvD~v~  233 (348)
T PLN03154        160 DSVFVSAASGAVGQLVGQLAK-LHGCYVVGSAGSSQK-VDLLKNKLGFD---EAFNYKEEPDLDAALKRYF-PEGIDIYF  233 (348)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEcCCHHH-HHHHHHhcCCC---EEEECCCcccHHHHHHHHC-CCCcEEEE
Confidence            369999998999999887654 678887765543211 11 11112221   111121   4444332211 13689999


Q ss_pred             EccCchhHHHHHHHHHH-cCCcEEEeC
Q 031341          112 DFTDASTVYDNVKQATA-FGMRSVVYV  137 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~-~g~~vVigt  137 (161)
                      |++... ..+....+++ .|.-+++|.
T Consensus       234 d~vG~~-~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        234 DNVGGD-MLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             ECCCHH-HHHHHHHHhccCCEEEEECc
Confidence            988654 3444444444 445444554

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.10  E-value=1.7  Score=34.26  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=25.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         4 ~vlItG~sg~iG~~la~~L~-~~g~~vi~~~r   34 (256)
T PRK12745          4 VALVTGGRRGIGLGIARALA-AAGFDLAINDR   34 (256)
T ss_pred             EEEEeCCCchHHHHHHHHHH-HCCCEEEEEec
Confidence            58899999999999999998 45788876543

>PRK12743 oxidoreductase; Provisional

Probab=92.07  E-value=1.3  Score=35.30  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=27.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +|.|.|++|.+|+.+++.+.+ .+.+++.+.++
T Consensus         4 ~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~   35 (256)
T PRK12743          4 VAIVTASDSGIGKACALLLAQ-QGFDIGITWHS   35 (256)
T ss_pred             EEEEECCCchHHHHHHHHHHH-CCCEEEEEeCC
Confidence            689999999999999999985 68888766554

>PRK06483 dihydromonapterin reductase; Provisional

Probab=92.02  E-value=3.8  Score=31.97  Aligned_cols=31  Identities=29%  Similarity=0.360  Sum_probs=26.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         4 ~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r   34 (236)
T PRK06483          4 PILITGAGQRIGLALAWHLL-AQGQPVIVSYR   34 (236)
T ss_pred             eEEEECCCChHHHHHHHHHH-HCCCeEEEEeC
Confidence            68999999999999999987 56888876543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.00  E-value=0.95  Score=38.14  Aligned_cols=97  Identities=19%  Similarity=0.200  Sum_probs=49.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~e-Lvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVID  112 (161)
                      =+|.|.|+ |.+|...++.+. ..+.+ +++ ++++..-.+..+-.|..   .+.-+  .+..+.+.+......+|+++|
T Consensus       178 ~~VlV~G~-g~vG~~a~~~ak-~~G~~~Vi~-~~~~~~~~~~~~~~Ga~---~~i~~~~~~~~~~i~~~~~~~g~d~vid  251 (358)
T TIGR03451       178 DSVAVIGC-GGVGDAAIAGAA-LAGASKIIA-VDIDDRKLEWAREFGAT---HTVNSSGTDPVEAIRALTGGFGADVVID  251 (358)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCCeEEE-EcCCHHHHHHHHHcCCc---eEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence            47999995 999999888665 56776 554 44321111111112210   01111  122222221111236899999


Q ss_pred             ccCchhHHHHHHHHHH-cCCcEEEeCC
Q 031341          113 FTDASTVYDNVKQATA-FGMRSVVYVP  138 (161)
Q Consensus       113 fT~p~~~~~~~~~al~-~g~~vVigtt  138 (161)
                      ++.-....+.+..+++ .|.-+++|.+
T Consensus       252 ~~g~~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       252 AVGRPETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             CCCCHHHHHHHHHHhccCCEEEEECCC
Confidence            9863334444444444 5665567754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK08264 short chain dehydrogenase; Validated

Probab=91.99  E-value=0.33  Score=37.96  Aligned_cols=32  Identities=38%  Similarity=0.475  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+.+ .+. +++.+..
T Consensus         7 ~~vlItGgsg~iG~~la~~l~~-~G~~~V~~~~r   39 (238)
T PRK08264          7 KVVLVTGANRGIGRAFVEQLLA-RGAAKVYAAAR   39 (238)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCcccEEEEec
Confidence            3699999999999999999974 577 6554443

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.96  E-value=0.33  Score=37.69  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=28.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +.+|.|.|++|.+|+.+++.+. ..+.+++.+.++
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~-~~g~~v~~~~~~   39 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLA-RAGADVVVHYRS   39 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCC
Confidence            3589999999999999999987 567887665554

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=91.93  E-value=3  Score=36.96  Aligned_cols=92  Identities=13%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++||.|+| +|.=...++..+.++ +.++..+..+...|.  ..+.   ..+-..-..|++++++ ++++.++|.||-..
T Consensus         2 ~~kVLvlG-~G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a---~~~~~~~~~d~e~l~~-~~~~~~id~Vi~~~   73 (435)
T PRK06395          2 TMKVMLVG-SGGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS---KKYLFYDEKDYDLIED-FALKNNVDIVFVGP   73 (435)
T ss_pred             ceEEEEEC-CcHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc---cceeecCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            58999999 588788888878766 477777754322121  0010   0000111257766543 34457899887332


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031341          115 DASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vV  134 (161)
                      -+......+....+.|++++
T Consensus        74 d~~l~~~~~~~l~~~Gi~v~   93 (435)
T PRK06395         74 DPVLATPLVNNLLKRGIKVA   93 (435)
T ss_pred             ChHHHHHHHHHHHHCCCcEE
Confidence            22223344556678898854

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=91.92  E-value=1.7  Score=38.22  Aligned_cols=97  Identities=9%  Similarity=0.047  Sum_probs=50.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhh-hcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~---~~~g~~~~~~-~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |-||+|+| .|.++..+++.+.++ |++++++...   ...+....+. .-+......+-|.|.+.+++ ++++.++|+|
T Consensus         2 ~kkili~g-~g~~~~~~~~aa~~l-G~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~I   78 (449)
T TIGR00514         2 LDKILIAN-RGEIALRILRACKEL-GIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIIS-AAEITGADAI   78 (449)
T ss_pred             cceEEEeC-CCHHHHHHHHHHHHc-CCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHH-HHHHhCCCEE
Confidence            34999999 599999999998754 8998877542   1111111110 00000001123555555543 2334689998


Q ss_pred             EEccCc-hhHHHHHHHHHHcCCcEE
Q 031341          111 IDFTDA-STVYDNVKQATAFGMRSV  134 (161)
Q Consensus       111 IDfT~p-~~~~~~~~~al~~g~~vV  134 (161)
                      +-.... ......+..+.+.|++++
T Consensus        79 ~pg~g~~se~~~~a~~~e~~Gi~~~  103 (449)
T TIGR00514        79 HPGYGFLSENANFAEQCERSGFTFI  103 (449)
T ss_pred             EeCCCccccCHHHHHHHHHCCCcEE
Confidence            732100 111223455566777753

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	4e-09
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	5e-09
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	1e-08
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	2e-08

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 32  PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEI 88
             +NI+V I GA   +GR  + A     G+++  A++   S  +G D G +        +
Sbjct: 2   HDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGV 60

Query: 89  PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
            V S L  V           V IDFT      +++      G   V+
Sbjct: 61  TVQSSLDAVKDDFD------VFIDFTRPEGTLNHLAFCRQHGKGMVI 101

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Length = 245

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 26/100 (26%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           ++V + GA  ++G   V AV  A  + ++  +D    G+ + ++ D          ++  
Sbjct: 1   MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD---AGDPLSLLTDGN--------TE-- 47

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
                        VVIDFT    V  N++     G+ +VV
Sbjct: 48  -------------VVIDFTHPDVVMGNLEFLIDNGIHAVV 74

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S++K+ I GA   +GR  + AV  A    + GA+D   S  +G+D G      +   + +
Sbjct: 6   SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQTGVAL 63

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
             D+  V            +IDFT       ++  A    ++ V+
Sbjct: 64  TDDIERVC------AEADYLIDFTLPEGTLVHLDAALRHDVKLVI 102

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
            ++++ + GA   +GR  + A+ + + +E+   +    S  V +D  ++   +  L + +
Sbjct: 20  GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRI 78

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
             D      +         ++DF+           A    +  ++
Sbjct: 79  TDDPESAFSNTE------GILDFSQPQASVLYANYAAQKSLIHII 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	99.95
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	99.94
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	99.92
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	99.88
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	99.86
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	99.84
4had_A	350	Probable oxidoreductase protein; structural genomi	99.77
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	99.74
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.73
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	99.72
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.71
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	99.7
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	99.7
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	99.7
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	99.69
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.69
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	99.69
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	99.69
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	99.69
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	99.69
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	99.69
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	99.69
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	99.68
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.68
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	99.68
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	99.68
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	99.68
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	99.68
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	99.67
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	99.67
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	99.67
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	99.67
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	99.67
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	99.67
1ydw_A	362	AX110P-like protein; structural genomics, protein	99.67
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	99.67
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	99.66
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	99.66
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	99.66
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	99.66
4h3v_A	390	Oxidoreductase domain protein; structural genomics	99.66
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	99.65
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	99.65
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.65
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	99.65
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	99.65
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	99.65
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	99.63
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	99.63
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	99.62
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	99.62
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	99.62
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	99.62
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	99.61
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	99.61
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	99.61
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	99.59
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	99.59
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	99.58
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.55
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	99.52
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.51
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.51
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	99.47
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	99.44
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	99.43
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	99.38
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	99.32
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	99.3
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	99.29
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	99.28
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	99.17
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	99.16
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	99.15
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	99.11
2g0t_A	350	Conserved hypothetical protein; structural genomic	99.06
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	99.02
2obn_A	349	Hypothetical protein; structural genomics, joint c	98.99
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	98.98
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.96
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	98.93
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.89
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.87
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.85
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.83
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	98.8
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.79
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	98.79
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	98.77
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.74
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.74
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.74
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	98.74
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	98.73
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.7
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	98.68
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.68
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.65
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.65
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	98.64
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.62
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.61
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.55
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.55
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	98.53
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.53
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	98.53
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.53
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	98.51
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	98.49
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	98.48
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	98.47
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	98.47
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.46
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	98.46
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	98.46
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	98.45
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.44
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.42
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.42
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	98.42
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.4
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.4
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	98.39
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.39
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	98.38
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	98.36
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.36
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.36
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	98.35
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	98.34
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	98.29
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.28
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	98.28
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.26
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.24
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	98.24
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.23
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.23
2csu_A	457	457AA long hypothetical protein; structural genomi	98.22
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	98.21
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.19
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.16
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.13
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.13
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.11
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.11
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.09
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	98.06
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	98.06
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.05
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.04
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	98.04
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.03
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.02
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.02
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.97
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.97
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	97.95
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.95
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.93
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	97.92
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	97.92
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.9
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.89
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.89
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.87
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	97.87
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.86
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.86
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	97.86
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.84
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.84
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	97.84
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.83
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.8
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.8
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.79
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.78
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.78
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.76
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.73
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.68
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	97.65
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.64
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	97.64
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.63
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	97.63
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.62
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.6
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.59
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.58
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.57
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.48
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.47
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.45
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.45
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.45
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.45
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.44
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.42
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.42
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	97.4
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.38
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.38
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.38
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.36
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.36
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.36
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	97.33
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.33
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.33
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.31
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.31
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.3
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	97.3
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.3
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.28
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.27
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.27
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	97.27
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.26
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.24
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.23
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.23
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.23
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.22
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.21
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	97.21
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.2
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.2
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.2
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.19
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.18
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.18
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.16
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.15
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.15
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.14
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.14
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.13
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.13
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	97.11
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.11
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	97.1
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.1
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.1
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.1
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.1
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.1
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.09
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.06
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.04
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.02
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.01
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	97.01
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.01
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.99
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.99
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.97
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.97
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.96
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.95
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	96.94
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.94
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.94
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.93
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.93
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.93
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.92
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.92
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	96.9
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.89
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.94
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.87
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.86
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	96.85
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.83
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.83
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.82
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.81
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	96.81
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.8
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.79
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.78
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.77
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.77
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.77
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	96.75
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.74
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.74
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.74
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.73
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.73
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.72
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.7
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.7
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.69
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.67
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	96.67
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.67
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.67
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.66
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.66
3cin_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.66
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	96.65
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.62
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	96.61
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.61
1vjp_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.61
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.6
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.55
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	96.55
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.55
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.54
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.53
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	96.53
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.52
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.52
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.52
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.5
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.5
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.5
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.49
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.48
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.47
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	96.46
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.46
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.43
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.43
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.42
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	96.41
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.41
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.41
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.39
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.38
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.37
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	96.37
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.36
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.36
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	96.34
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	96.34
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	96.34
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.33
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.32
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.31
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.31
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.31
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.3
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	96.27
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.27
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.27
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.27
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.24
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.21
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.21
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.19
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.19
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.19
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.17
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.17
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.16
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.15
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.15
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	96.15
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.13
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.13
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.11
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.08
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.06
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.06
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.05
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.04
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.04
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	96.03
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.03
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.99
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.98
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.96
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.94
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.91
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	95.91
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	95.89
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	95.88
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	95.87
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.85
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.85
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.82
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.79
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.79
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.77
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	95.75
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.74
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.73
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	95.7
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.69
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.69
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.68
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.68
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.67
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.65
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	95.65
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.61
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.6
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.54
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.52
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.48
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.41
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	95.39
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.37
3cxt_A	291	Dehydrogenase with different specificities; rossma	95.34
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.32
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.28
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.27
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.27
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.27
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.24
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.19
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.18
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.18
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.14
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	95.14
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.14
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.11
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.1
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.09
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.07
4dqx_A	277	Probable oxidoreductase protein; structural genomi	95.07
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.04
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.04
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.02
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	95.01
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.0
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.98
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	94.97
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.95
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	94.95
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.95
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.94
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.94
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.94
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	94.92
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.91
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	94.87
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.84
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	94.83
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.82
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.81
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.78
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	94.73
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.71
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.69
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	94.68
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.67
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	94.67
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	94.67
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	94.67
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.66
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	94.65
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.64
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.64
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.62
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	94.6
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	94.6
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	94.57
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.57
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.55
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.53
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.53
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	94.53
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.52
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.52
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.51
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.49
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.49
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	94.46
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	94.46
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.46
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	94.46
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.45
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.45
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	94.43
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	94.4
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.36
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.35
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.35
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	94.34
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	94.33
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	94.33
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	94.32
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	94.32
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	94.31
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.3
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	94.29
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.28
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.26
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.26
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	94.24
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.22
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.21

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=99.95  E-value=3.8e-28  Score=201.88  Aligned_cols=121  Identities=13%  Similarity=0.280  Sum_probs=112.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      .|+||+|+||+|+||+.+++.+.+.|+++|+|++|+.   ..|+++++++|.. +.++++++|+++++.      ++|||
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~-~~gv~v~~dl~~ll~------~aDVv   92 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRITDDPESAFS------NTEGI   92 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS-CCSCBCBSCHHHHTT------SCSEE
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC-cCCceeeCCHHHHhc------CCCEE
Confidence            5799999999999999999999999999999999964   3689999999985 789999999999985      79999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ||||+|+.+.+++..|+++|+|+|+|||||++++.++|.++|++.|+||+.
T Consensus        93 IDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~~~~~~a~  143 (288)
T 3ijp_A           93 LDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKYTTIVKSG  143 (288)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTTSEEEECS
T ss_pred             EEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCcCCEEEEC
Confidence            999999999999999999999999999999999999999999999999873

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=99.94  E-value=7.5e-27  Score=192.55  Aligned_cols=119  Identities=23%  Similarity=0.323  Sum_probs=111.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ||||+|+||+|+||+.+++.+.++++++|++++|+.   ..|+++++++|.. + ++++++|+++++.      ++||||
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~-~-gv~v~~dl~~ll~------~~DVVI   78 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ-T-GVALTDDIERVCA------EADYLI   78 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCC-C-SCBCBCCHHHHHH------HCSEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCC-C-CceecCCHHHHhc------CCCEEE
Confidence            699999999999999999999999999999999964   3688999998874 4 9999999999986      699999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      |||+|+.+.+++..|+++|+|+|+|||||++++.++|.++|++.|+||+.
T Consensus        79 DfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~~~vv~a~  128 (272)
T 4f3y_A           79 DFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIALVFSA  128 (272)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTTSEEEECS
T ss_pred             EcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhccCCEEEEC
Confidence            99999999999999999999999999999999999999999999999873

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=99.92  E-value=5.7e-25  Score=181.05  Aligned_cols=121  Identities=22%  Similarity=0.314  Sum_probs=110.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      ++|||+|+|++|+||+.+++.+...++++|++++|+..   .|.++++++|.. +.++++++|+++++.      ++|||
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~-~~~v~~~~dl~~~l~------~~DvV   76 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDVF   76 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC-cCCceecCCHHHHhc------CCCEE
Confidence            46999999988999999999999999999999999643   377888888875 678999999998884      69999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ||||+|+.+.+++..|+++|+|+|+|||||++++.++|.++|++.|++++.
T Consensus        77 IDft~p~~~~~~~~~a~~~G~~vVigTtG~~~e~~~~L~~~a~~~~vv~a~  127 (273)
T 1dih_A           77 IDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAA  127 (273)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTTSCEEECS
T ss_pred             EEcCChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhcCCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999873

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=99.88  E-value=7.1e-23  Score=166.35  Aligned_cols=105  Identities=13%  Similarity=0.240  Sum_probs=94.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ||||+|+|+ |+||+.+++.+.+.++ +|++++|+...           .+.++++++|+++++       ++||+||||
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~-----------~~~gv~v~~dl~~l~-------~~DVvIDft   62 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPK-----------ATTPYQQYQHIADVK-------GADVAIDFS   62 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC-------------CCSCBCSCTTTCT-------TCSEEEECS
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCcc-----------ccCCCceeCCHHHHh-------CCCEEEEeC
Confidence            799999997 9999999999999999 99999997532           135788999998875       489999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +|+...++++  +++|+++|+|||||++++.++|.++|++.|+|++.
T Consensus        63 ~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa~~~~v~~a~  107 (243)
T 3qy9_A           63 NPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSA  107 (243)
T ss_dssp             CHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHTTTSEEEECS
T ss_pred             ChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHHhcCCEEEEC
Confidence            9999999997  99999999999999999999999999999999973

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=99.86  E-value=3.2e-21  Score=156.73  Aligned_cols=100  Identities=23%  Similarity=0.339  Sum_probs=89.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+|+|++|+||+.+++.+...++++|++++|+.                     +|+++++.     .++||+||||+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------------~dl~~~~~-----~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------------DPLSLLTD-----GNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------------CCTHHHHH-----TTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------------CCHHHHhc-----cCCcEEEEccC
Confidence            69999999999999999999889999999999853                     24566664     37999999999


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhh---hcCeeecC
Q 031341          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD---KASMVSTG  161 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~---~~~Vv~tg  161 (161)
                      |+...+++..|+++|+|+|+|||||++++.++|.++|+   +.|++++.
T Consensus        55 p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~  103 (245)
T 1p9l_A           55 PDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP  103 (245)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECS
T ss_pred             hHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEEC
Confidence            99999999999999999999999999999999999998   67888863

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=99.84  E-value=1e-20  Score=152.26  Aligned_cols=97  Identities=20%  Similarity=0.291  Sum_probs=85.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -||.+|+|++||||+.+++.+ ..++++|++++|+...                   ++    +.      ++||+||||
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~~~-------------------~~----l~------~~DVvIDFT   61 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNGV-------------------EE----LD------SPDVVIDFS   61 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTEE-------------------EE----CS------CCSEEEECS
T ss_pred             cceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCCCc-------------------cc----cc------CCCEEEECC
Confidence            389999999999999998854 7999999999996310                   11    11      589999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +|+...++++.|+++|+|+|+|||||++++.+.|.+++++.|+|++.
T Consensus        62 ~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vv~ap  108 (228)
T 1vm6_A           62 SPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAY  108 (228)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTTSEEEECS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhhCCEEEec
Confidence            99999999999999999999999999999999999999999999874

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=99.77  E-value=1.3e-18  Score=144.93  Aligned_cols=117  Identities=20%  Similarity=0.192  Sum_probs=98.7

Q ss_pred             CCCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eeCCHHHHHhcccccCCccEE
Q 031341           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      ++||||||+| +|+||+. ++..+...|+++|+|++|++.  ....+++   ++++++ +|+|++++++.    .++|+|
T Consensus        21 ~~mirigiIG-~G~ig~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~~----~~iDaV   90 (350)
T 4had_A           21 QSMLRFGIIS-TAKIGRDNVVPAIQDAENCVVTAIASRDL--TRAREMA---DRFSVPHAFGSYEEMLAS----DVIDAV   90 (350)
T ss_dssp             -CCEEEEEES-CCHHHHHTHHHHHHHCSSEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHHC----SSCSEE
T ss_pred             cCccEEEEEc-ChHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCeeeCCHHHHhcC----CCCCEE
Confidence            6799999999 5999987 478888899999999999753  2223333   245664 79999999984    789999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +.+|+|..+.+.+..|+++||||++++| +.+.++.++|.++|++.+++.
T Consensus        91 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l  140 (350)
T 4had_A           91 YIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVV  140 (350)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred             EEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence            9999999999999999999999999999 789999999999999987754

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=99.74  E-value=1.6e-17  Score=138.75  Aligned_cols=116  Identities=10%  Similarity=0.058  Sum_probs=95.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh-------cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTK-------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSK  105 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~-------~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~  105 (161)
                      ++|||||+| +|+||+.+++.+..       .++++|+|++|++..  ...+++   +++++ .+|+|++++++.    .
T Consensus        24 kkirvgiIG-~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~--~a~~~a---~~~g~~~~y~d~~ell~~----~   93 (393)
T 4fb5_A           24 KPLGIGLIG-TGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAG--LAEARA---GEFGFEKATADWRALIAD----P   93 (393)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--T--THHHHH---HHHTCSEEESCHHHHHHC----T
T ss_pred             CCccEEEEc-CCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHH--HHHHHH---HHhCCCeecCCHHHHhcC----C
Confidence            359999999 59999999887654       478899999997532  222232   24565 479999999984    7


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++|+|+.+|++..+.+.+..|+++||||++++| +.|.++.++|.++|++.+++.
T Consensus        94 ~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l  148 (393)
T 4fb5_A           94 EVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVA  148 (393)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred             CCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence            899999899999999999999999999999999 789999999999999998754

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.73  E-value=2.7e-17  Score=138.10  Aligned_cols=116  Identities=14%  Similarity=0.074  Sum_probs=99.3

Q ss_pred             CCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr-~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +++||+|+| +|+||+ .+++.+.+.++++|++++|++.  ....+++   .+++++.++|++++++.    .++|+|+.
T Consensus        26 ~~~rigiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~ll~~----~~~D~V~i   95 (350)
T 3rc1_A           26 NPIRVGVIG-CADIAWRRALPALEAEPLTEVTAIASRRW--DRAKRFT---ERFGGEPVEGYPALLER----DDVDAVYV   95 (350)
T ss_dssp             CCEEEEEES-CCHHHHHTHHHHHHHCTTEEEEEEEESSH--HHHHHHH---HHHCSEEEESHHHHHTC----TTCSEEEE
T ss_pred             CceEEEEEc-CcHHHHHHHHHHHHhCCCeEEEEEEcCCH--HHHHHHH---HHcCCCCcCCHHHHhcC----CCCCEEEE
Confidence            359999999 599999 7999999999999999999753  2222332   24578888999999973    67999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        96 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~  143 (350)
T 3rc1_A           96 PLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLL  143 (350)
T ss_dssp             CCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence            99999999999999999999999999 889999999999999998754

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=99.72  E-value=5.9e-17  Score=136.35  Aligned_cols=114  Identities=16%  Similarity=0.097  Sum_probs=97.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      .++||+|+| +|+||+.+++.+. ..++++|++++|+...  ...++.   .+++  ++.|+|++++++.    .++|+|
T Consensus        22 ~~~rvgiIG-~G~~g~~~~~~l~~~~~~~~lvav~d~~~~--~~~~~a---~~~g~~~~~~~~~~~ll~~----~~~D~V   91 (357)
T 3ec7_A           22 MTLKAGIVG-IGMIGSDHLRRLANTVSGVEVVAVCDIVAG--RAQAAL---DKYAIEAKDYNDYHDLIND----KDVEVV   91 (357)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHTCTTEEEEEEECSSTT--HHHHHH---HHHTCCCEEESSHHHHHHC----TTCCEE
T ss_pred             CeeeEEEEC-CcHHHHHHHHHHHhhCCCcEEEEEEeCCHH--HHHHHH---HHhCCCCeeeCCHHHHhcC----CCCCEE
Confidence            358999999 5999999999998 7899999999997532  222222   1234  6789999999974    679999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCe
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASM  157 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~V  157 (161)
                      +.+|++..+.+.+..++++|+||++++| ..+.++.++|.++|++.++
T Consensus        92 ~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  139 (357)
T 3ec7_A           92 IITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGK  139 (357)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTS
T ss_pred             EEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999 7899999999999999886

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=99.71  E-value=1.5e-16  Score=132.14  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=98.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +|+||+|+|+ |+||+.+++.+...+++++++++|++..  ...+++   .+++++ .|+|++++++.    .++|+|+.
T Consensus         4 ~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~~--~~~~~a---~~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (329)
T 3evn_A            4 SKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTLE--SAQAFA---NKYHLPKAYDKLEDMLAD----ESIDVIYV   73 (329)
T ss_dssp             -CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCSS--TTCC------CCCCSCEESCHHHHHTC----TTCCEEEE
T ss_pred             CceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCHH--HHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            4699999995 9999999999999999999999996532  122222   245775 89999999973    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        74 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~  121 (329)
T 3evn_A           74 ATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFL  121 (329)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999 789999999999999988754

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=99.70  E-value=1.7e-16  Score=132.48  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=96.5

Q ss_pred             CeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr-~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ++||+|+| +|+||+ .+++.+...++++|+|++|+..            +..+++.|+|++++++.   ..++|+|+.+
T Consensus        25 ~~rvgiiG-~G~ig~~~~~~~l~~~~~~~lvav~d~~~------------~~~g~~~~~~~~~ll~~---~~~vD~V~i~   88 (330)
T 4ew6_A           25 PINLAIVG-VGKIVRDQHLPSIAKNANFKLVATASRHG------------TVEGVNSYTTIEAMLDA---EPSIDAVSLC   88 (330)
T ss_dssp             CEEEEEEC-CSHHHHHTHHHHHHHCTTEEEEEEECSSC------------CCTTSEEESSHHHHHHH---CTTCCEEEEC
T ss_pred             CceEEEEe-cCHHHHHHHHHHHHhCCCeEEEEEEeCCh------------hhcCCCccCCHHHHHhC---CCCCCEEEEe
Confidence            59999999 599999 7999999999999999999753            13577889999999972   1479999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        89 tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~  135 (330)
T 4ew6_A           89 MPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASL  135 (330)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999999999998 789999999999999987643

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=99.70  E-value=2.1e-16  Score=131.61  Aligned_cols=116  Identities=15%  Similarity=0.171  Sum_probs=100.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|+||+|+|+ |+||+.+++.+.+.++++|++++|++.  .....+.   ..++++.|+|++++++.    .++|+|+.+
T Consensus         3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~~l~~----~~~D~V~i~   72 (344)
T 3euw_A            3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFI--EGAQRLA---EANGAEAVASPDEVFAR----DDIDGIVIG   72 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HTTTCEEESSHHHHTTC----SCCCEEEEC
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCceeCCHHHHhcC----CCCCEEEEe
Confidence            4699999995 999999999999999999999999753  2222333   24568889999999973    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |++..+.+.+..++++|+||++++| +.+.++.++|.++|++.++++
T Consensus        73 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~  119 (344)
T 3euw_A           73 SPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKV  119 (344)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGE
T ss_pred             CCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999999999999 889999999999999987654

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=99.70  E-value=1.8e-16  Score=131.38  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=98.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .|+||+|+| +|+||+.+++.+.+.++++|++++|++.  .....+.   ..++++ |+|++++++.    .++|+|+.+
T Consensus         2 m~~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~-~~~~~~~l~~----~~~D~V~i~   70 (331)
T 4hkt_A            2 MTVRFGLLG-AGRIGKVHAKAVSGNADARLVAVADAFP--AAAEAIA---GAYGCE-VRTIDAIEAA----ADIDAVVIC   70 (331)
T ss_dssp             -CEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HHTTCE-ECCHHHHHHC----TTCCEEEEC
T ss_pred             CceEEEEEC-CCHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHHHH---HHhCCC-cCCHHHHhcC----CCCCEEEEe
Confidence            368999999 5999999999999999999999999753  2222332   245778 9999999973    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |+|..+.+.+..++++|+||++++| +.+.++.++|.++|++.++++
T Consensus        71 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~  117 (331)
T 4hkt_A           71 TPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKL  117 (331)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeE
Confidence            9999999999999999999999998 889999999999999988754

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=99.69  E-value=6.9e-17  Score=137.73  Aligned_cols=117  Identities=14%  Similarity=0.107  Sum_probs=97.3

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhc--------CCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQ  103 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~--------~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~  103 (161)
                      +++|||||+| +|+||+.+++.+.+.        ++++|+|++|++.  ....+++   +++++ ++|+|+++++++   
T Consensus        24 s~klrvgiIG-~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~--~~a~~~a---~~~~~~~~y~d~~~ll~~---   94 (412)
T 4gqa_A           24 SARLNIGLIG-SGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQ--AMAERHA---AKLGAEKAYGDWRELVND---   94 (412)
T ss_dssp             -CEEEEEEEC-CSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHHC---
T ss_pred             cccceEEEEc-CcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCH--HHHHHHH---HHcCCCeEECCHHHHhcC---
Confidence            4569999999 599999999998765        4789999999653  2222222   13455 589999999984   


Q ss_pred             cCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                       .++|+|+.+|++..+.+++..|+++||||++++| +.+.++.++|.++|++.+++.
T Consensus        95 -~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  150 (412)
T 4gqa_A           95 -PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKT  150 (412)
T ss_dssp             -TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             -CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCee
Confidence             7899999999999999999999999999999999 789999999999999987654

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=99.69  E-value=1.9e-16  Score=132.65  Aligned_cols=116  Identities=24%  Similarity=0.220  Sum_probs=99.1

Q ss_pred             CeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr-~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |+||+|+| +|+||+ .++..+...++++|++++|++ ..+...+..+   ..++++|+|++++++.    .++|+|+.+
T Consensus         2 ~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~---~~~~~~~~~~~~ll~~----~~~D~V~i~   72 (349)
T 3i23_A            2 TVKMGFIG-FGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFK---EKGVNFTADLNELLTD----PEIELITIC   72 (349)
T ss_dssp             CEEEEEEC-CSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHH---TTTCEEESCTHHHHSC----TTCCEEEEC
T ss_pred             eeEEEEEc-cCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhC---CCCCeEECCHHHHhcC----CCCCEEEEe
Confidence            68999999 599999 688888889999999999976 3333333222   1467899999999974    679999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |++..+.+.+..|+++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        73 tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  119 (349)
T 3i23_A           73 TPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVV  119 (349)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence            9999999999999999999999999 789999999999999987754

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=99.69  E-value=1.5e-16  Score=133.00  Aligned_cols=118  Identities=14%  Similarity=0.111  Sum_probs=98.6

Q ss_pred             CCCCeeEEEEcCCC-HHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCcc
Q 031341           32 PQSNIKVIINGAVK-EIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        32 ~~~~ikV~ViGa~G-~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~D  108 (161)
                      +++++||+|+|+ | .||+.+++.+... ++++|++++|++.  .....+.   +++++ ++|+|++++++.    .++|
T Consensus        15 ~~~~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~vD   84 (340)
T 1zh8_A           15 PLRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLES----GLVD   84 (340)
T ss_dssp             -CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHHS----SCCS
T ss_pred             CCCceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHhcC----CCCC
Confidence            345799999995 9 8999999999988 8999999999653  1222222   13454 789999999974    6899


Q ss_pred             EEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|+.+|++..+.+.+..|+++|+||++++| ..+.++.++|.++|++.++++
T Consensus        85 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  136 (340)
T 1zh8_A           85 AVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTV  136 (340)
T ss_dssp             EEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred             EEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            999999999999999999999999999998 689999999999999987654

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=99.69  E-value=1.9e-16  Score=133.28  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=99.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +++||+|+| +|+||+.+++.+...++++|++++|++..  .. +.+   ...++++|+|++++++.    .++|+|+.+
T Consensus         4 ~~~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~--~~-~~a---~~~g~~~~~~~~~ll~~----~~~D~V~i~   72 (359)
T 3e18_A            4 KKYQLVIVG-YGGMGSYHVTLASAADNLEVHGVFDILAE--KR-EAA---AQKGLKIYESYEAVLAD----EKVDAVLIA   72 (359)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSHH--HH-HHH---HTTTCCBCSCHHHHHHC----TTCCEEEEC
T ss_pred             CcCcEEEEC-cCHHHHHHHHHHHhCCCcEEEEEEcCCHH--HH-HHH---HhcCCceeCCHHHHhcC----CCCCEEEEc
Confidence            359999999 59999999999999999999999997531  11 222   25678899999999974    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        73 tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (359)
T 3e18_A           73 TPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF  119 (359)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            9999999999999999999999998 789999999999999988754

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=99.69  E-value=4.4e-16  Score=128.10  Aligned_cols=113  Identities=18%  Similarity=0.226  Sum_probs=96.4

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCc
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~---~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      ++.+|+||+|+| .|.||+.+++.+..   .++++|++++|+....          ...+++ +.|++++++.    .++
T Consensus         3 ~~~~~~rvgiIG-~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----------~~~g~~-~~~~~ell~~----~~v   66 (294)
T 1lc0_A            3 TNSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----------SLDEVR-QISLEDALRS----QEI   66 (294)
T ss_dssp             CCCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----------EETTEE-BCCHHHHHHC----SSE
T ss_pred             CCCCcceEEEEE-EcHHHHHHHHHHhccccCCCEEEEEEECchHHH----------HHcCCC-CCCHHHHhcC----CCC
Confidence            446789999999 59999999999886   6899999999964321          134566 5899999974    689


Q ss_pred             cEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |+|+.+|++..+.+++..|+++|+||++++| ..+.++.++|.++|++.++++
T Consensus        67 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  119 (294)
T 1lc0_A           67 DVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVL  119 (294)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             CEEEEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence            9999999999999999999999999999998 678999999999999987653

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=99.69  E-value=2.5e-16  Score=131.87  Aligned_cols=114  Identities=25%  Similarity=0.306  Sum_probs=98.2

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +++||+|+| +|+||+. +++.+...++++|++++|++..  ...+     ...++++|+|++++++.    .++|+|+.
T Consensus         6 ~~~rvgiiG-~G~~g~~~~~~~~~~~~~~~l~av~d~~~~--~~~~-----~~~~~~~~~~~~~ll~~----~~vD~V~i   73 (352)
T 3kux_A            6 DKIKVGLLG-YGYASKTFHAPLIMGTPGLELAGVSSSDAS--KVHA-----DWPAIPVVSDPQMLFND----PSIDLIVI   73 (352)
T ss_dssp             CCEEEEEEC-CSHHHHHTHHHHHHTSTTEEEEEEECSCHH--HHHT-----TCSSCCEESCHHHHHHC----SSCCEEEE
T ss_pred             CCceEEEEC-CCHHHHHHHHHHHhhCCCcEEEEEECCCHH--HHHh-----hCCCCceECCHHHHhcC----CCCCEEEE
Confidence            469999999 5999997 8999999999999999996531  1111     13467889999999984    67999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        74 ~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~  121 (352)
T 3kux_A           74 PTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLL  121 (352)
T ss_dssp             CSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCE
T ss_pred             eCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999 899999999999999998754

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=99.69  E-value=1.2e-16  Score=140.12  Aligned_cols=142  Identities=14%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             eecccccccccccceeEEe--------eCCCCCCCeeEEEEcCC---CHHHHHHHHHHHhc-CCcEEEEEEecCCCCcch
Q 031341            9 HCRMHHISQNVKAKRFISC--------STNPPQSNIKVIINGAV---KEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDI   76 (161)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ikV~ViGa~---G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~   76 (161)
                      |-.-||-|.|+.+.+-...        ++-+..+++||+|+|+.   |.||+.+++.+... ++++|++++|+..  ...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~--~~a   82 (479)
T 2nvw_A            5 HHHHHHSSENLYFQGHMLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSS   82 (479)
T ss_dssp             ---CTTCGGGTGGGTCCCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHH
T ss_pred             cccccccchhHHHHHHHHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCH--HHH
Confidence            4456889999988765332        33333456999999952   99999999999988 9999999999653  122


Q ss_pred             hhhhcCCCCCCe---eeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC------CcEEEeCC-CCCHHHHH
Q 031341           77 GMVCDMEQPLEI---PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVS  146 (161)
Q Consensus        77 ~~~~g~~~~~~i---~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g------~~vVigtt-g~~~e~~~  146 (161)
                      ..++   +.+++   .+|+|++++++.    .++|+|+.+|++..+.+.+..|+++|      +||++++| ..+.++.+
T Consensus        83 ~~~a---~~~g~~~~~~~~d~~ell~~----~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~  155 (479)
T 2nvw_A           83 LQTI---EQLQLKHATGFDSLESFAQY----KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAE  155 (479)
T ss_dssp             HHHH---HHTTCTTCEEESCHHHHHHC----TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHH
T ss_pred             HHHH---HHcCCCcceeeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHH
Confidence            2222   13344   489999999974    68999999999999999999999999      99999998 68899999


Q ss_pred             HHHHHhhhcC-eee
Q 031341          147 ALSAFCDKAS-MVS  159 (161)
Q Consensus       147 ~L~~~A~~~~-Vv~  159 (161)
                      +|.++|++.+ +++
T Consensus       156 ~l~~~a~~~g~~~~  169 (479)
T 2nvw_A          156 ELYSISQQRANLQT  169 (479)
T ss_dssp             HHHHHHHTCTTCEE
T ss_pred             HHHHHHHHcCCeEE
Confidence            9999999988 543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=99.69  E-value=1.5e-16  Score=133.09  Aligned_cols=116  Identities=11%  Similarity=0.108  Sum_probs=99.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +++||+|+| +|+||+.+++.+.+.++++|++++|++.  .....+.   ..++++.|+|++++++.    .++|+|+.+
T Consensus         4 ~~~~vgiiG-~G~~g~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~~l~~----~~~D~V~i~   73 (354)
T 3db2_A            4 NPVGVAAIG-LGRWAYVMADAYTKSEKLKLVTCYSRTE--DKREKFG---KRYNCAGDATMEALLAR----EDVEMVIIT   73 (354)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEECSSH--HHHHHHH---HHHTCCCCSSHHHHHHC----SSCCEEEEC
T ss_pred             CcceEEEEc-cCHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHhcC----CCCCEEEEe
Confidence            358999999 5999999999999999999999999753  2222222   13567779999999963    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |++..+.+.+..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~  120 (354)
T 3db2_A           74 VPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKF  120 (354)
T ss_dssp             SCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCE
T ss_pred             CChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeE
Confidence            9999999999999999999999999 889999999999999987754

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=99.68  E-value=2.2e-16  Score=131.35  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=99.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +++||+|+|+ |+||+.+++.+.+.++++|++++|++.  ....++.   ..+++ .+|+|++++++.    .++|+|+.
T Consensus         4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (330)
T 3e9m_A            4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRL--ENAQKMA---KELAIPVAYGSYEELCKD----ETIDIIYI   73 (330)
T ss_dssp             CCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSS--HHHHHHH---HHTTCCCCBSSHHHHHHC----TTCSEEEE
T ss_pred             CeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH---HHcCCCceeCCHHHHhcC----CCCCEEEE
Confidence            4699999995 999999999999999999999999753  2222332   24566 478999999974    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|++..+.+.+..++++|+||++++| +.+.++.++|.++|++.++++
T Consensus        74 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~  121 (330)
T 3e9m_A           74 PTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFL  121 (330)
T ss_dssp             CCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999 889999999999999988754

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.68  E-value=2.6e-16  Score=131.75  Aligned_cols=118  Identities=16%  Similarity=0.126  Sum_probs=100.3

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      ..+|+||+|+| +|+||+.+++.+.+. ++++|++++|++.  .....+.   ..++++.|+|++++++.    .++|+|
T Consensus        10 ~~~~~rvgiiG-~G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V   79 (354)
T 3q2i_A           10 TDRKIRFALVG-CGRIANNHFGALEKHADRAELIDVCDIDP--AALKAAV---ERTGARGHASLTDMLAQ----TDADIV   79 (354)
T ss_dssp             CSSCEEEEEEC-CSTTHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHHCCEEESCHHHHHHH----CCCSEE
T ss_pred             CCCcceEEEEc-CcHHHHHHHHHHHhCCCCeEEEEEEcCCH--HHHHHHH---HHcCCceeCCHHHHhcC----CCCCEE
Confidence            34679999999 599999999999988 8999999999753  2222222   13567889999999974    689999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +.+|+|..+.+.+..++++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        80 ~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~  129 (354)
T 3q2i_A           80 ILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHL  129 (354)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            9999999999999999999999999999 789999999999999987754

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=99.68  E-value=4.4e-16  Score=130.97  Aligned_cols=113  Identities=13%  Similarity=0.120  Sum_probs=98.3

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +|+||+|+| +|+||+. ++..+...++++|++++|++..  ...      ..+ ++++|+|++++++.    .++|+|+
T Consensus         4 ~~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~------~~~~~~~~~~~~~~ll~~----~~vD~V~   70 (362)
T 3fhl_A            4 EIIKTGLAA-FGMSGQVFHAPFISTNPHFELYKIVERSKE--LSK------ERYPQASIVRSFKELTED----PEIDLIV   70 (362)
T ss_dssp             CCEEEEESC-CSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGG------TTCTTSEEESCSHHHHTC----TTCCEEE
T ss_pred             CceEEEEEC-CCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHH------HhCCCCceECCHHHHhcC----CCCCEEE
Confidence            569999999 5999997 8999989999999999997532  121      133 67899999999974    6799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        71 i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (362)
T 3fhl_A           71 VNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLML  119 (362)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence            999999999999999999999999999 789999999999999988754

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=99.68  E-value=6.4e-17  Score=138.11  Aligned_cols=116  Identities=16%  Similarity=0.275  Sum_probs=93.3

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        30 ~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      |..++++||+|+| +| +|+.+++.+.+.+ ++||+|++|++.  .+..+++   +++|++.|+|++++++      ++|
T Consensus         2 ~~~~~~~rv~VvG-~G-~g~~h~~a~~~~~~~~elvav~~~~~--~~a~~~a---~~~gv~~~~~~~~l~~------~~D   68 (372)
T 4gmf_A            2 PSASPKQRVLIVG-AK-FGEMYLNAFMQPPEGLELVGLLAQGS--ARSRELA---HAFGIPLYTSPEQITG------MPD   68 (372)
T ss_dssp             -----CEEEEEEC-ST-TTHHHHHTTSSCCTTEEEEEEECCSS--HHHHHHH---HHTTCCEESSGGGCCS------CCS
T ss_pred             CCCCCCCEEEEEe-hH-HHHHHHHHHHhCCCCeEEEEEECCCH--HHHHHHH---HHhCCCEECCHHHHhc------CCC
Confidence            3456689999999 58 7999999988776 699999999753  2333443   3678999999999985      699


Q ss_pred             EEEEccCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          109 VVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       109 VVIDfT~p~~~----~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +++..|++..+    .+.++.++++||||++++| ++.++.++|.++|+++++++
T Consensus        69 ~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~~  122 (372)
T 4gmf_A           69 IACIVVRSTVAGGAGTQLARHFLARGVHVIQEHP-LHPDDISSLQTLAQEQGCCY  122 (372)
T ss_dssp             EEEECCC--CTTSHHHHHHHHHHHTTCEEEEESC-CCHHHHHHHHHHHHHHTCCE
T ss_pred             EEEEECCCcccchhHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHHHHcCCEE
Confidence            98878766555    8999999999999999999 89999999999999998875

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=99.68  E-value=3.2e-16  Score=130.21  Aligned_cols=115  Identities=11%  Similarity=0.017  Sum_probs=96.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |+||+|+| +|+||+.+++.+...+  +++|++++|++.  ....+++   .++++ .+|+|++++++.    .++|+|+
T Consensus         2 ~~rigiiG-~G~ig~~~~~~l~~~~~~~~~l~av~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~   71 (334)
T 3ohs_X            2 ALRWGIVS-VGLISSDFTAVLQTLPRSEHQVVAVAARDL--SRAKEFA---QKHDIPKAYGSYEELAKD----PNVEVAY   71 (334)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTSCTTTEEEEEEECSSH--HHHHHHH---HHHTCSCEESSHHHHHHC----TTCCEEE
T ss_pred             ccEEEEEC-chHHHHHHHHHHHhCCCCCeEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEE
Confidence            58999999 5999999999998877  479999999753  1222222   13466 479999999974    6899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+|++..+.+++..|+++|+||++++| ..+.++.++|.++|++.++++
T Consensus        72 i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~  120 (334)
T 3ohs_X           72 VGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFL  120 (334)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCE
T ss_pred             ECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEE
Confidence            999999999999999999999999999 789999999999999988754

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=99.68  E-value=2e-16  Score=134.32  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=99.6

Q ss_pred             CCeeEEEEcCCC-HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVK-EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G-~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +++||+|+|+ | .||+.++..+...++++|++++|+..  ....++.   .+++++.|+|++++++.    .++|+|+.
T Consensus         1 ~~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~ell~~----~~vD~V~i   70 (387)
T 3moi_A            1 MKIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNE--DVRERFG---KEYGIPVFATLAEMMQH----VQMDAVYI   70 (387)
T ss_dssp             CCEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCH--HHHHHHH---HHHTCCEESSHHHHHHH----SCCSEEEE
T ss_pred             CceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCH--HHHHHHH---HHcCCCeECCHHHHHcC----CCCCEEEE
Confidence            3699999995 9 99999999999999999999999643  1222222   24578899999999984    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|+|..+.+++..|+++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        71 ~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  118 (387)
T 3moi_A           71 ASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHL  118 (387)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCE
T ss_pred             cCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeE
Confidence            99999999999999999999999999 789999999999999988753

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=99.67  E-value=1.2e-16  Score=139.53  Aligned_cols=123  Identities=21%  Similarity=0.200  Sum_probs=98.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhh-cCC----------------CCCCeeeeCCH
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVC-DME----------------QPLEIPVMSDL   94 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~-g~~----------------~~~~i~v~~dl   94 (161)
                      .+++||+|+|+ |+||+.+++.+...++++|++++|++... +...+.. |..                ...++.+|+|+
T Consensus        21 ~k~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~   99 (446)
T 3upl_A           21 GKPIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDN   99 (446)
T ss_dssp             TCCEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred             CCceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCH
Confidence            35799999995 99999999999999999999999965311 1111111 200                01236789999


Q ss_pred             HHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341           95 TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      +++++.    .++|+|+++|. |..+.+++..|+++||||++.+.+++.++.++|.++|++++++++
T Consensus       100 eeLL~d----~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~  162 (446)
T 3upl_A          100 DLILSN----PLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYS  162 (446)
T ss_dssp             HHHHTC----TTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHhcC----CCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeee
Confidence            999974    68999999995 567899999999999999998877888889999999999999875

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=99.67  E-value=4.6e-16  Score=129.71  Aligned_cols=113  Identities=16%  Similarity=0.143  Sum_probs=96.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |+||+|+|+ |+||+.+++.+. ..++++|++++|++.  ....++.   ++++  .++|+|++++++.    .++|+|+
T Consensus         2 ~~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~--~~~~~~~---~~~g~~~~~~~~~~~ll~~----~~~D~V~   71 (344)
T 3mz0_A            2 SLRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQ--EAAQKVV---EQYQLNATVYPNDDSLLAD----ENVDAVL   71 (344)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSH--HHHHHHH---HHTTCCCEEESSHHHHHHC----TTCCEEE
T ss_pred             eEEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCCeeeCCHHHHhcC----CCCCEEE
Confidence            589999995 999999999998 789999999999753  1222222   1345  6789999999974    6799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCe
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASM  157 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~V  157 (161)
                      .+|++..+.+.+..++++|+||++++| +.+.++.++|.++|++.++
T Consensus        72 i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~  118 (344)
T 3mz0_A           72 VTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGK  118 (344)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSS
T ss_pred             ECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999 8899999999999999876

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=99.67  E-value=1e-15  Score=127.05  Aligned_cols=115  Identities=11%  Similarity=0.111  Sum_probs=96.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHH--------hcccccC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVL--------GSISQSK  105 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l--------~~~~~~~  105 (161)
                      .|+||+|+|+.|.||+.+++.+... +.+|++++|+.....   ....  ...+.++|+|+++++        +    +.
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~---~~~~--~~~~~~~~~~~~~ll~~~~~l~~~----~~   71 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVG---LVDS--FFPEAEFFTEPEAFEAYLEDLRDR----GE   71 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCG---GGGG--TCTTCEEESCHHHHHHHHHHHHHT----TC
T ss_pred             CceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHH---HHHh--hCCCCceeCCHHHHHHHhhhhccc----CC
Confidence            3799999996578999999999876 799999999754221   1111  123678899999998        4    26


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCee
Q 031341          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ++|+|+.+|++..+.++++.|+++|+||++++| ..+.++.++|.++|++.+++
T Consensus        72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  125 (312)
T 3o9z_A           72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRR  125 (312)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCE
Confidence            899999999999999999999999999999999 78999999999999998874

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=99.67  E-value=7.8e-16  Score=129.79  Aligned_cols=115  Identities=14%  Similarity=0.184  Sum_probs=97.5

Q ss_pred             CCCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      .+|+||+|+|+ |+||+. +++.+...++++|++++|++.  ....+.     ..++++|+|++++++.    .++|+|+
T Consensus         5 ~~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~~ll~~----~~~D~V~   72 (364)
T 3e82_A            5 NNTINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDE--EKVKRD-----LPDVTVIASPEAAVQH----PDVDLVV   72 (364)
T ss_dssp             --CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHHH-----CTTSEEESCHHHHHTC----TTCSEEE
T ss_pred             CCcceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhh-----CCCCcEECCHHHHhcC----CCCCEEE
Confidence            35799999995 999996 888898899999999999753  122211     2367889999999974    6899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        73 i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  121 (364)
T 3e82_A           73 IASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLL  121 (364)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             EeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            999999999999999999999999998 789999999999999998764

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=99.67  E-value=9.5e-16  Score=126.67  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=96.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +++||+|+|++|+||+.+++.+.+. ++++++.+++...|..         ..|+++|+|++++.++    ..+|++++|
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g~~---------~~G~~vy~sl~el~~~----~~~D~viI~   71 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIY   71 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCcccce---------eCCeeccCCHHHHhhc----CCCCEEEEe
Confidence            4589999999999999999999876 7999988886432211         3588999999999852    379999999


Q ss_pred             cCchhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          114 TDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~v-Vigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ++|+.+.+.++.|+++|+++ |+.|+|++.++.++|.++|++.++...|
T Consensus        72 tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG  120 (288)
T 2nu8_A           72 VPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG  120 (288)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            99999999999999999997 5668899999899999999999885543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=99.67  E-value=3.8e-16  Score=131.06  Aligned_cols=120  Identities=12%  Similarity=0.171  Sum_probs=97.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      .+++||+|+|+ |+||+.+++.+...+++++++++|++.. .....+..|.  +.+.++|+|++++++.    .++|+|+
T Consensus         4 ~~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~--~~~~~~~~~~~~ll~~----~~~D~V~   76 (362)
T 1ydw_A            4 ETQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY--PESTKIHGSYESLLED----PEIDALY   76 (362)
T ss_dssp             --CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC--CTTCEEESSHHHHHHC----TTCCEEE
T ss_pred             CCceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC--CCCCeeeCCHHHHhcC----CCCCEEE
Confidence            35699999995 9999999999999999999999996531 1122222221  1135778999999973    5799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+|++..+.+++..++++|+||++++| .++.++.++|.++|+++++++
T Consensus        77 i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~  125 (362)
T 1ydw_A           77 VPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  125 (362)
T ss_dssp             ECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             EcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEE
Confidence            999999999999999999999999997 789999999999999998754

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=99.67  E-value=3.8e-16  Score=130.22  Aligned_cols=115  Identities=12%  Similarity=0.137  Sum_probs=97.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |+||+|+| +|+||+.+++.+.+.+++++++++|++.  ....++.   ..+++ .+|+|++++++.    .++|+|+.+
T Consensus         2 ~~rvgiIG-~G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~~----~~~D~V~i~   71 (344)
T 3ezy_A            2 SLRIGVIG-LGRIGTIHAENLKMIDDAILYAISDVRE--DRLREMK---EKLGVEKAYKDPHELIED----PNVDAVLVC   71 (344)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHGGGSTTEEEEEEECSCH--HHHHHHH---HHHTCSEEESSHHHHHHC----TTCCEEEEC
T ss_pred             eeEEEEEc-CCHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHhCCCceeCCHHHHhcC----CCCCEEEEc
Confidence            58999999 5999999999999999999999999653  1222222   13455 479999999974    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |++..+.+.+..++++|+||++++| +.+.++.++|.++|++.++++
T Consensus        72 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~  118 (344)
T 3ezy_A           72 SSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVIL  118 (344)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCE
T ss_pred             CCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcE
Confidence            9999999999999999999999999 889999999999999987754

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=99.66  E-value=4.7e-16  Score=128.26  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=96.2

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        30 ~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      |+..+++||+|+|+ |+||+.+++.+.+.+++++++++|++.  .....+.    +. ++.++|++++++.    .++|+
T Consensus         5 p~~~~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~--~~~~~~~----~~-~~~~~~~~~~l~~----~~~D~   72 (315)
T 3c1a_A            5 PANNSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNP--DNLALVP----PG-CVIESDWRSVVSA----PEVEA   72 (315)
T ss_dssp             ----CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCH--HHHTTCC----TT-CEEESSTHHHHTC----TTCCE
T ss_pred             CCCCCcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH----hh-CcccCCHHHHhhC----CCCCE
Confidence            45556799999995 999999999999889999999999642  1121221    12 6778999999863    57999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |+.+|+|..+.+.+..++++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        73 V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~  123 (315)
T 3c1a_A           73 VIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMV  123 (315)
T ss_dssp             EEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCE
T ss_pred             EEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999987 678999999999999987654

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=99.66  E-value=8.7e-16  Score=128.23  Aligned_cols=115  Identities=19%  Similarity=0.174  Sum_probs=95.8

Q ss_pred             CeeEEEEcCCCHHHHH-HHH-HHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRA-AVI-AVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~-i~~-~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |+||+|+| +|+||+. ++. .+...++++|++++|++...  . +...  ...++++|+|++++++.    .++|+|+.
T Consensus         2 ~~rvgiiG-~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~--~-~~~~--~~~~~~~~~~~~~ll~~----~~~D~V~i   71 (345)
T 3f4l_A            2 VINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKP--E-EQAP--IYSHIHFTSDLDEVLND----PDVKLVVV   71 (345)
T ss_dssp             CEEEEEEC-CSHHHHHHTHHHHTTCTTTEEEEEEECSSCCG--G-GGSG--GGTTCEEESCTHHHHTC----TTEEEEEE
T ss_pred             ceEEEEEe-cCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhH--H-HHHH--hcCCCceECCHHHHhcC----CCCCEEEE
Confidence            69999999 5999995 777 55778999999999975421  1 1111  13477899999999973    67999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|++..+.+.+..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        72 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  119 (345)
T 3f4l_A           72 CTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTV  119 (345)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             cCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999998 789999999999999987754

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=99.66  E-value=1.2e-15  Score=128.40  Aligned_cols=115  Identities=20%  Similarity=0.237  Sum_probs=97.4

Q ss_pred             CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++||+|+| +|+||+. +++.+.+.++++|++++|++.  .....+.   +.+ +.++|+|++++++.    .++|+|+.
T Consensus         5 ~~rigiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~i   74 (359)
T 3m2t_A            5 LIKVGLVG-IGAQMQENLLPSLLQMQDIRIVAACDSDL--ERARRVH---RFISDIPVLDNVPAMLNQ----VPLDAVVM   74 (359)
T ss_dssp             CEEEEEEC-CSHHHHHTHHHHHHTCTTEEEEEEECSSH--HHHGGGG---GTSCSCCEESSHHHHHHH----SCCSEEEE
T ss_pred             cceEEEEC-CCHHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHH---HhcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            58999999 5999996 899999999999999999753  2222222   133 56789999999984    67899999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|++..+.+.+..|+++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        75 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~  122 (359)
T 3m2t_A           75 AGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVS  122 (359)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999 789999999999999987654

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=99.66  E-value=1.2e-15  Score=126.60  Aligned_cols=118  Identities=10%  Similarity=0.174  Sum_probs=97.5

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccE
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      +.+|+||+|+|+ |+||+.+++.+. ..+++++++++|++.  .....+.   ..+++ .+++|++++++.    .++|+
T Consensus         5 ~~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~~----~~~D~   74 (346)
T 3cea_A            5 TRKPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDS--NQLEWAK---NELGVETTYTNYKDMIDT----ENIDA   74 (346)
T ss_dssp             CCCCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCH--HHHHHHH---HTTCCSEEESCHHHHHTT----SCCSE
T ss_pred             CCCcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCH--HHHHHHH---HHhCCCcccCCHHHHhcC----CCCCE
Confidence            356799999995 999999999998 789999999999653  1222222   13466 678999999863    57999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhc-Ceee
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKA-SMVS  159 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~-~Vv~  159 (161)
                      |+++|++..+.+.+..++++|+||++++| +.+.++.++|.++|++. ++.+
T Consensus        75 V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~  126 (346)
T 3cea_A           75 IFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIF  126 (346)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCE
T ss_pred             EEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeE
Confidence            99999999999999999999999999987 67899999999999988 6543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=99.66  E-value=2.2e-16  Score=131.67  Aligned_cols=114  Identities=15%  Similarity=0.105  Sum_probs=92.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-------EEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~-------eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~  106 (161)
                      +|||||+| +|+||+.+++.+...|++       +|++++|++.  .....++   +++++ .+|+|++++++.    .+
T Consensus         6 klrvgiIG-~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~--~~a~~~a---~~~g~~~~~~d~~~ll~~----~~   75 (390)
T 4h3v_A            6 NLGIGLIG-YAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDA--EAVRAAA---GKLGWSTTETDWRTLLER----DD   75 (390)
T ss_dssp             EEEEEEEC-HHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESCHHHHTTC----TT
T ss_pred             cCcEEEEc-CCHHHHHHHHHHHhCccccccccCceEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CC
Confidence            48999999 599999999999887764       9999999653  1222222   13455 579999999984    78


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHH---hhhcCee
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF---CDKASMV  158 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~---A~~~~Vv  158 (161)
                      +|+|+.+|++..+.+++..|+++||||++++| +.|.++.++|.++   +++.+++
T Consensus        76 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~  131 (390)
T 4h3v_A           76 VQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIR  131 (390)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCc
Confidence            99999899999999999999999999999999 7899999999666   5556553

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=99.65  E-value=2.1e-15  Score=125.48  Aligned_cols=119  Identities=13%  Similarity=0.134  Sum_probs=96.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcc---c--ccCCcc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSI---S--QSKARA  108 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~---~--~~~~~D  108 (161)
                      .|+||+|+|+.|.||+.+++.+... +.++++++|+....   .....  ...+.++|+|++++++.+   .  .+.++|
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD   75 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSV---GIIDS--ISPQSEFFTEFEFFLDHASNLKRDSATALD   75 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESSHHHHHHHHHHHTTSTTTSCC
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCcEECCHHHHHHhhhhhhhccCCCCc
Confidence            3799999996578999999999876 89999999975421   12211  123678899999988200   0  026899


Q ss_pred             EEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCee
Q 031341          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv  158 (161)
                      +|+.+|+|..+.+++..|+++|+||++++| ..+.++.++|.++|++.+++
T Consensus        76 ~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  126 (318)
T 3oa2_A           76 YVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKR  126 (318)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCC
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCE
Confidence            999999999999999999999999999999 78999999999999998774

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=99.65  E-value=5.4e-16  Score=133.96  Aligned_cols=121  Identities=9%  Similarity=0.047  Sum_probs=97.2

Q ss_pred             CCCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           33 QSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr-~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      .+++||+|+|+ |+||+ .+++.+.+.++++|++++|++.. .....+..|.. ..++.+|+|++++++.    .++|+|
T Consensus        81 ~~~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~ll~~----~~vD~V  154 (433)
T 1h6d_A           81 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD----PKIDAV  154 (433)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC----TTCCEE
T ss_pred             CCceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC-cccccccCCHHHHhcC----CCCCEE
Confidence            45699999995 99997 89999988899999999996431 11222222221 1123478999999873    679999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +.+|++..+.+++..++++|+||++++| +++.++.++|.++|++.++++
T Consensus       155 ~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  204 (433)
T 1h6d_A          155 YIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  204 (433)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeE
Confidence            9999999999999999999999999997 689999999999999987654

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.65  E-value=6.3e-16  Score=126.94  Aligned_cols=113  Identities=18%  Similarity=0.242  Sum_probs=95.4

Q ss_pred             CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |+||+|+| +|+||+. +++.+.+.+++++++++|++.  .....+.   ..++++.|+|++++++      ++|+|+.+
T Consensus         6 ~~~igiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~ll~------~~D~V~i~   73 (308)
T 3uuw_A            6 NIKMGMIG-LGSIAQKAYLPILTKSERFEFVGAFTPNK--VKREKIC---SDYRIMPFDSIESLAK------KCDCIFLH   73 (308)
T ss_dssp             CCEEEEEC-CSHHHHHHTHHHHTSCSSSEEEEEECSCH--HHHHHHH---HHHTCCBCSCHHHHHT------TCSEEEEC
T ss_pred             cCcEEEEe-cCHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHHh------cCCEEEEe
Confidence            58999999 5999996 899998889999999999753  2222222   1346666999999995      79999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |++..+.+.+..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~  120 (308)
T 3uuw_A           74 SSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNL  120 (308)
T ss_dssp             CCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCE
T ss_pred             CCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            9999999999999999999999998 689999999999999987654

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=99.65  E-value=2e-15  Score=124.84  Aligned_cols=112  Identities=14%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +.+||+|+|++|+||+.+++.+.+. ++++++.+++...|.   +      ..|+++|.+++++.++    ..+|++|+|
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~---~------i~G~~vy~sl~el~~~----~~~Dv~Ii~   71 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGM---E------VLGVPVYDTVKEAVAH----HEVDASIIF   71 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---E------ETTEEEESSHHHHHHH----SCCSEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCc---e------ECCEEeeCCHHHHhhc----CCCCEEEEe
Confidence            4589999999999999999998865 899888888653221   1      2588999999999863    479999999


Q ss_pred             cCchhHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~-vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++|+.+.+.++.|+++|++ +|+.|+|++.++.++|.++|++.++..
T Consensus        72 vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~v  118 (288)
T 1oi7_A           72 VPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRL  118 (288)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            9999999999999999999 788899999988999999999988743

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=99.65  E-value=1.2e-15  Score=128.34  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=97.6

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +|+||+|+| +|+||+. +++.+...++++|++++|++.  ....+.     -.++++|+|++++++.    .++|+|+.
T Consensus         4 ~~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~~ll~~----~~vD~V~i   71 (358)
T 3gdo_A            4 DTIKVGILG-YGLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKRD-----FPDAEVVHELEEITND----PAIELVIV   71 (358)
T ss_dssp             TCEEEEEEC-CSHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHHH-----CTTSEEESSTHHHHTC----TTCCEEEE
T ss_pred             CcceEEEEc-cCHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhh-----CCCCceECCHHHHhcC----CCCCEEEE
Confidence            469999999 5999997 889888899999999999753  112211     1267889999999974    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        72 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~  119 (358)
T 3gdo_A           72 TTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLL  119 (358)
T ss_dssp             CSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             cCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999 789999999999999987754

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=99.65  E-value=1.2e-15  Score=125.75  Aligned_cols=114  Identities=15%  Similarity=0.243  Sum_probs=94.0

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +++||+|+|+ |+||+. +++.+.+.+++++++++|++..  ...++.   ..+++++++|++++ .     .++|+|+.
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~--~~~~~~---~~~g~~~~~~~~~l-~-----~~~D~V~i   71 (319)
T 1tlt_A            4 KKLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRA--KALPIC---ESWRIPYADSLSSL-A-----ASCDAVFV   71 (319)
T ss_dssp             -CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCT--THHHHH---HHHTCCBCSSHHHH-H-----TTCSEEEE
T ss_pred             CcceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCHH--HHHHHH---HHcCCCccCcHHHh-h-----cCCCEEEE
Confidence            3699999995 999997 8998988899999999997532  222222   13456678899877 4     48999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|+|..+.+.+..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        72 ~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~  119 (319)
T 1tlt_A           72 HSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  119 (319)
T ss_dssp             CSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             eCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999987 688999999999999988754

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=99.63  E-value=5.8e-15  Score=122.57  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=95.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCC-ccEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~-~DVVID  112 (161)
                      .+.||+|+|++|+||+.+++.+.+. ++++++.+++...|..         -.|+++|+|++++.++    .. +|++|+
T Consensus        12 ~~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~~DvaIi   77 (297)
T 2yv2_A           12 SETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGSE---------VHGVPVYDSVKEALAE----HPEINTSIV   77 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----CTTCCEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCCEEEE
Confidence            4578999999999999999999865 8998888885432221         2588999999999852    24 999999


Q ss_pred             ccCchhHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          113 FTDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~-vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      |++|+.+.+.++.|+++|++ +|+.|+|++.++.++|.++|++.++..-
T Consensus        78 ~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi  126 (297)
T 2yv2_A           78 FVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATII  126 (297)
T ss_dssp             CCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             ecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999 7888999999989999999999988543

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=99.63  E-value=1.6e-15  Score=127.83  Aligned_cols=114  Identities=11%  Similarity=0.110  Sum_probs=93.6

Q ss_pred             CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-eeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~-i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++||+|+| +|++|.. ++..+. .++++|++++|++.  ....+++   ++++ .++|+|++++++.    .++|+|+.
T Consensus        26 ~irvgiiG-~G~~~~~~~~~~~~-~~~~~lvav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~I   94 (361)
T 3u3x_A           26 ELRFAAVG-LNHNHIYGQVNCLL-RAGARLAGFHEKDD--ALAAEFS---AVYADARRIATAEEILED----ENIGLIVS   94 (361)
T ss_dssp             CCEEEEEC-CCSTTHHHHHHHHH-HTTCEEEEEECSCH--HHHHHHH---HHSSSCCEESCHHHHHTC----TTCCEEEE
T ss_pred             CcEEEEEC-cCHHHHHHHHHHhh-cCCcEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            48999999 5999964 566554 79999999999653  2222222   1344 5789999999974    67999998


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|++..+.+++..|+++|+||++++| ..+.++.++|.++|++.++++
T Consensus        95 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l  142 (361)
T 3u3x_A           95 AAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF  142 (361)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred             eCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999 789999999999999988754

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=99.62  E-value=2.2e-15  Score=130.18  Aligned_cols=122  Identities=14%  Similarity=0.094  Sum_probs=96.8

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC---CeeeeC----CHHHHHhcccc
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMS----DLTMVLGSISQ  103 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~---~i~v~~----dl~~~l~~~~~  103 (161)
                      ++.+++||+|+| +|.||+.+++.+...++++|++++|+...  ....+.....++   +.++|+    |+++++++   
T Consensus        16 ~~~~~~rvgiIG-~G~~g~~h~~~l~~~~~~~lvav~d~~~~--~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~---   89 (444)
T 2ixa_A           16 FNPKKVRIAFIA-VGLRGQTHVENMARRDDVEIVAFADPDPY--MVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD---   89 (444)
T ss_dssp             ---CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSCHH--HHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC---
T ss_pred             CCCCCceEEEEe-cCHHHHHHHHHHHhCCCcEEEEEEeCCHH--HHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC---
Confidence            344579999999 59999999999999999999999996531  122211100012   256788    99999973   


Q ss_pred             cCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                       .++|+|+.+|++..+.+++..|+++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        90 -~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~  145 (444)
T 2ixa_A           90 -KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPL  145 (444)
T ss_dssp             -TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCE
T ss_pred             -CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence             6799999999999999999999999999999998 679999999999999987643

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=5.3e-15  Score=122.63  Aligned_cols=113  Identities=18%  Similarity=0.286  Sum_probs=95.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ...|++|+|++|+||+.+++.+.+ .++++++.+++...|..         -.|+++|.|++++.++    .++|++|+|
T Consensus        12 ~~~~v~V~Gasg~~G~~~~~~l~~-~g~~~V~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~Dv~ii~   77 (294)
T 2yv1_A           12 ENTKAIVQGITGRQGSFHTKKMLE-CGTKIVGGVTPGKGGQN---------VHGVPVFDTVKEAVKE----TDANASVIF   77 (294)
T ss_dssp             TTCCEEEETTTSHHHHHHHHHHHH-TTCCEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHh-CCCeEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCEEEEc
Confidence            357899999999999999999986 48998888875432221         2488999999999852    379999999


Q ss_pred             cCchhHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~-vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      ++|+.+.+.++.|+++|++ +|+.|+|++.++.++|.++|++.++..-
T Consensus        78 vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi  125 (294)
T 2yv1_A           78 VPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKII  125 (294)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999 7778999999999999999999988543

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=99.62  E-value=9.3e-16  Score=129.41  Aligned_cols=118  Identities=15%  Similarity=0.257  Sum_probs=97.7

Q ss_pred             CCCeeEEEEcCCCHHHHH-HH----HHHHhcCCcEEE---------EEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHH
Q 031341           33 QSNIKVIINGAVKEIGRA-AV----IAVTKARGMEVA---------GAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMV   97 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~-i~----~~l~~~~~~eLv---------avvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~   97 (161)
                      .++|||+|+|++|.||+. ++    +.+.+.++++|+         +++|++.  ....+++   .++++ .+|+|++++
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~--~~a~~~a---~~~~~~~~~~~~~~l   78 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSA--EKVEALA---KRFNIARWTTDLDAA   78 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSS--HHHHHHH---HHTTCCCEESCHHHH
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCH--HHHHHHH---HHhCCCcccCCHHHH
Confidence            346999999966999998 88    888888888765         6888653  2223332   24566 479999999


Q ss_pred             HhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++.    .++|+|+.+|++..+.+++..|+++||||++++| +++.++.++|.++|++.++.+
T Consensus        79 l~~----~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~  137 (383)
T 3oqb_A           79 LAD----KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKH  137 (383)
T ss_dssp             HHC----SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             hcC----CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            984    6799999999999999999999999999999998 789999999999999987743

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=99.62  E-value=2.5e-15  Score=125.29  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=90.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +++||+|+| +|+||+.+++.+.+.+++++++++|+.... .   +     ..++++++|+++++.      ++|+||++
T Consensus         2 ~~irV~IiG-~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~---~-----~~gv~~~~d~~~ll~------~~DvViia   65 (320)
T 1f06_A            2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATL-D---T-----KTPVFDVADVDKHAD------DVDVLFLC   65 (320)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCC-S---S-----SSCEEEGGGGGGTTT------TCSEEEEC
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-h---h-----cCCCceeCCHHHHhc------CCCEEEEc
Confidence            369999999 599999999999999999999999975321 1   1     146778889988773      79999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHH-HHHHHHhhhcC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETV-SALSAFCDKAS  156 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~-~~L~~~A~~~~  156 (161)
                      |+|..+.+++..++++|+|+|++++ +.+.++. ++|.++|++.+
T Consensus        66 tp~~~h~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           66 MGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             SCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999998 5677777 89999999865

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=99.61  E-value=2.7e-15  Score=127.73  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=97.3

Q ss_pred             CCCeeEEEEcCCCH---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCCCCCCe---eeeCCHHHHHhccc-cc
Q 031341           33 QSNIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QS  104 (161)
Q Consensus        33 ~~~ikV~ViGa~G~---mGr~i~~~l~~~~~~eLva-vvd~~~~g~~~~~~~g~~~~~~i---~v~~dl~~~l~~~~-~~  104 (161)
                      -+++||+|+| +|+   ||+.++..+...++++|++ ++|+..  ....+++   .++++   .+|+|++++++.-. ++
T Consensus        10 m~~~rvgiiG-~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~   83 (398)
T 3dty_A           10 PQPIRWAMVG-GGSQSQIGYIHRCAALRDNTFVLVAGAFDIDP--IRGSAFG---EQLGVDSERCYADYLSMFEQEARRA   83 (398)
T ss_dssp             CSCEEEEEEE-CCTTCSSHHHHHHHHHGGGSEEEEEEECCSSH--HHHHHHH---HHTTCCGGGBCSSHHHHHHHHTTCT
T ss_pred             cCcceEEEEc-CCccchhHHHHHHHHhhCCCeEEEEEEeCCCH--HHHHHHH---HHhCCCcceeeCCHHHHHhcccccC
Confidence            3569999999 599   9999999999899999998 677642  1222222   24566   58999999987200 00


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .++|+|+.+|++..+.+++..|+++|+||++++| ..+.++.++|.++|++.++++
T Consensus        84 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  139 (398)
T 3dty_A           84 DGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIV  139 (398)
T ss_dssp             TCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeE
Confidence            2599999999999999999999999999999998 789999999999999998754

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=99.61  E-value=4.4e-15  Score=122.59  Aligned_cols=113  Identities=18%  Similarity=0.155  Sum_probs=93.3

Q ss_pred             eeEEEEcCCCHHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i-~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |||+|+|+ |+||+.+ ++.+.+ +++++++++|++.  ....++.   .+++++ +++|++++++.    .++|+|+.+
T Consensus         1 ~~vgiiG~-G~~g~~~~~~~l~~-~~~~~vav~d~~~--~~~~~~~---~~~g~~~~~~~~~~~l~~----~~~D~V~i~   69 (332)
T 2glx_A            1 NRWGLIGA-STIAREWVIGAIRA-TGGEVVSMMSTSA--ERGAAYA---TENGIGKSVTSVEELVGD----PDVDAVYVS   69 (332)
T ss_dssp             CEEEEESC-CHHHHHTHHHHHHH-TTCEEEEEECSCH--HHHHHHH---HHTTCSCCBSCHHHHHTC----TTCCEEEEC
T ss_pred             CeEEEEcc-cHHHHHhhhHHhhc-CCCeEEEEECCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEEe
Confidence            68999995 9999998 888887 9999999999653  1222222   134554 78999999863    579999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |+|..+.+.+..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        70 tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~  116 (332)
T 2glx_A           70 TTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVL  116 (332)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            9999999999999999999999997 679999999999999887653

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=99.61  E-value=1.7e-15  Score=126.14  Aligned_cols=113  Identities=12%  Similarity=0.074  Sum_probs=94.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |+||+|+|+ |.+|+.+++.+  .++++|++++|+..  ......+...   +++  .++|+|++++++.    .++|+|
T Consensus         2 ~~rvgiiG~-G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~----~~vD~V   71 (337)
T 3ip3_A            2 SLKICVIGS-SGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAIS---EMNIKPKKYNNWWEMLEK----EKPDIL   71 (337)
T ss_dssp             CEEEEEECS-SSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHH---TTTCCCEECSSHHHHHHH----HCCSEE
T ss_pred             ceEEEEEcc-chhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHH---HcCCCCcccCCHHHHhcC----CCCCEE
Confidence            699999995 88888888877  89999999999653  2223333321   233  4789999999984    679999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCe
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASM  157 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~V  157 (161)
                      +.+|++..+.+++..|+++|+||++++| ..+.++.++|.++|++.++
T Consensus        72 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  119 (337)
T 3ip3_A           72 VINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRN  119 (337)
T ss_dssp             EECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTT
T ss_pred             EEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999 7899999999999999875

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=99.59  E-value=4.8e-15  Score=127.27  Aligned_cols=120  Identities=19%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             CCeeEEEEcCCCH---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCCCCCCe---eeeCCHHHHHhccc-ccC
Q 031341           34 SNIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSK  105 (161)
Q Consensus        34 ~~ikV~ViGa~G~---mGr~i~~~l~~~~~~eLva-vvd~~~~g~~~~~~~g~~~~~~i---~v~~dl~~~l~~~~-~~~  105 (161)
                      +++||+|+| +|+   ||+.++..+...++++|++ ++|+..  ....+++   .++++   .+|+|++++++.-. +..
T Consensus        36 ~~~rvgiiG-~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~~  109 (417)
T 3v5n_A           36 KRIRLGMVG-GGSGAFIGAVHRIAARLDDHYELVAGALSSTP--EKAEASG---RELGLDPSRVYSDFKEMAIREAKLKN  109 (417)
T ss_dssp             CCEEEEEES-CC--CHHHHHHHHHHHHTSCEEEEEEECCSSH--HHHHHHH---HHHTCCGGGBCSCHHHHHHHHHHCTT
T ss_pred             CcceEEEEc-CCCchHHHHHHHHHHhhCCCcEEEEEEeCCCH--HHHHHHH---HHcCCCcccccCCHHHHHhcccccCC
Confidence            459999999 599   9999999998899999997 778643  1222222   13455   58999999997100 003


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++|+|+.+|++..+.+++..|+++||||++++| ..+.++.++|.++|++.++++
T Consensus       110 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  164 (417)
T 3v5n_A          110 GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALF  164 (417)
T ss_dssp             CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCE
T ss_pred             CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence            599999999999999999999999999999999 789999999999999987754

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=99.59  E-value=9.9e-15  Score=121.14  Aligned_cols=115  Identities=12%  Similarity=0.103  Sum_probs=93.3

Q ss_pred             CCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr-~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +++||+|+| +|+||. .+++.+. .++++|++++|++..  ....+.   ..+ ++++|+|++++++.    .++|+|+
T Consensus         3 ~~~rvgiiG-~G~~~~~~~~~~l~-~~~~~lvav~d~~~~--~~~~~a---~~~~~~~~~~~~~~ll~~----~~~D~V~   71 (336)
T 2p2s_A            3 KKIRFAAIG-LAHNHIYDMCQQLI-DAGAELAGVFESDSD--NRAKFT---SLFPSVPFAASAEQLITD----ASIDLIA   71 (336)
T ss_dssp             -CCEEEEEC-CSSTHHHHHHHHHH-HTTCEEEEEECSCTT--SCHHHH---HHSTTCCBCSCHHHHHTC----TTCCEEE
T ss_pred             CccEEEEEC-CChHHHHHhhhhhc-CCCcEEEEEeCCCHH--HHHHHH---HhcCCCcccCCHHHHhhC----CCCCEEE
Confidence            369999999 599996 6777775 689999999996532  112222   123 56789999999973    6799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+|++..+.+.+..|+++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        72 i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (336)
T 2p2s_A           72 CAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKF  120 (336)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCE
T ss_pred             EeCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            899999999999999999999999998 678999999999999987653

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=99.58  E-value=4.5e-15  Score=128.26  Aligned_cols=117  Identities=11%  Similarity=0.080  Sum_probs=97.5

Q ss_pred             CCeeEEEEcC---CCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeeCCHHHHHhcccccCC
Q 031341           34 SNIKVIINGA---VKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        34 ~~ikV~ViGa---~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i---~v~~dl~~~l~~~~~~~~  106 (161)
                      +++||+|+|+   .|.||+.+++.+.+. ++++|++++|+...  ....+.   +.+++   .+|+|++++++.    .+
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~--~~~~~a---~~~g~~~~~~~~~~~~ll~~----~~   89 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIE--TSIATI---QRLKLSNATAFPTLESFASS----ST   89 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHH--HHHHHH---HHTTCTTCEEESSHHHHHHC----SS
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHH--HHHHHH---HHcCCCcceeeCCHHHHhcC----CC
Confidence            4599999995   399999999999998 99999999996531  112222   12344   489999999973    67


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcC------CcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g------~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|+|+.+|++..+.+++..|+++|      +||++++| +.+.++.++|.++|++.++++
T Consensus        90 vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~  149 (438)
T 3btv_A           90 IDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQT  149 (438)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEE
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeE
Confidence            999999999999999999999999      99999997 689999999999999998764

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.55  E-value=1.5e-14  Score=119.86  Aligned_cols=108  Identities=20%  Similarity=0.256  Sum_probs=85.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--eeCCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~--v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +++||+|+| +|+||+.+++.+.+.++++|++++|++..  ....       .|++  .++++.+.       .++|+|+
T Consensus         8 ~~irv~IIG-~G~iG~~~~~~l~~~~~~elvav~d~~~~--~~~~-------~g~~~~~~~~l~~~-------~~~DvVi   70 (304)
T 3bio_A            8 KKIRAAIVG-YGNIGRYALQALREAPDFEIAGIVRRNPA--EVPF-------ELQPFRVVSDIEQL-------ESVDVAL   70 (304)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECC----------------CCTTSCEESSGGGS-------SSCCEEE
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHhcCCCCEEEEEEcCCHH--HHHH-------cCCCcCCHHHHHhC-------CCCCEEE
Confidence            369999999 59999999999999999999999996532  1111       2333  24444433       3799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ++|++..+.+++..++++|+|+++++|  +.+.++.++|.+++++.+++
T Consensus        71 iatp~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~  119 (304)
T 3bio_A           71 VCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAA  119 (304)
T ss_dssp             ECSCHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             ECCCchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence            999999999999999999999999986  57889999999999998754

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=99.52  E-value=2.2e-14  Score=120.67  Aligned_cols=118  Identities=15%  Similarity=0.136  Sum_probs=89.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc--------CCcEEEEEEecCCCC---cchhhhhcCCCCCCeeeeC--CHHHHHhc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPVMS--DLTMVLGS  100 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~--------~~~eLvavvd~~~~g---~~~~~~~g~~~~~~i~v~~--dl~~~l~~  100 (161)
                      +|+||+|+| +|.||+.+++.+.+.        ++++|++++|++..-   .+..++.... .....+++  |++++++.
T Consensus         1 ~mirvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~-~~~~~~~~~~d~~~ll~~   78 (327)
T 3do5_A            1 GMIKIAIVG-FGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMK-RETGMLRDDAKAIEVVRS   78 (327)
T ss_dssp             -CEEEEEEC-CSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHH-HHHSSCSBCCCHHHHHHH
T ss_pred             CcEEEEEEe-ccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhh-ccCccccCCCCHHHHhcC
Confidence            389999999 599999999999988        899999999965311   1122211100 01123555  99999974


Q ss_pred             ccccCCccEEEEccCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          101 ISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~----~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                          .++|+|+|+|+++.+    .+++..++++|+|||+++.+.-..+.++|.++|+++++
T Consensus        79 ----~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           79 ----ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             ----SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             ----CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence                789999999988776    89999999999999999775545678899999999876

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=99.51  E-value=8.5e-14  Score=115.06  Aligned_cols=113  Identities=13%  Similarity=0.168  Sum_probs=89.2

Q ss_pred             CeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr-~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |+||+|+|+ |+||+ .+++.+.+.++++++ ++|++.  ....++.   ..++++. +.+..+++.     .++|+|+.
T Consensus         2 ~~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~-----~~~D~V~i   69 (323)
T 1xea_A            2 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVMI   69 (323)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEEE
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHH---HHcCCCccccCHHHHhh-----cCCCEEEE
Confidence            589999994 99998 599999888999999 999643  1222222   1345543 444444554     48999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|+|..+.+.+..++++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        70 ~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~  117 (323)
T 1xea_A           70 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  117 (323)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeE
Confidence            99999999999999999999999997 678999999999999987643

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.51  E-value=1.4e-13  Score=109.54  Aligned_cols=101  Identities=17%  Similarity=0.238  Sum_probs=84.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+|+|+ |+||+.+++.+. .+++++++++|++..   .       ..    .++|++++++     .++|+|+++++
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~-~~g~~lv~v~d~~~~---~-------~~----~~~~~~~l~~-----~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLE-RNGFEIAAILDVRGE---H-------EK----MVRGIDEFLQ-----REMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEEECSSCC---C-------TT----EESSHHHHTT-----SCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCCCEEEEEEecCcc---h-------hh----hcCCHHHHhc-----CCCCEEEECCC
Confidence            59999995 999999999988 799999999996521   1       01    5789999884     37999999999


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCC-CHHHH-HHHHHHhhhcCe
Q 031341          116 ASTVYDNVKQATAFGMRSVVYVPHI-QLETV-SALSAFCDKASM  157 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVigttg~-~~e~~-~~L~~~A~~~~V  157 (161)
                      |+.+.+++..++++|+++|+++|+. +.++. ++|.+++++.++
T Consensus        60 ~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~  103 (236)
T 2dc1_A           60 QQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR  103 (236)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999964 33444 789999988654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=99.47  E-value=1.2e-13  Score=120.63  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=93.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~---------~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~  105 (161)
                      ++||+|+| +|.+|+.+++.+.++         ++++|++++|++..  ....+.     .+..+++|++++++.    .
T Consensus        10 ~irIgIIG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~--~~~~~~-----~~~~~~~d~~ell~d----~   77 (444)
T 3mtj_A           10 PIHVGLLG-LGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLD--KAEALA-----GGLPLTTNPFDVVDD----P   77 (444)
T ss_dssp             CEEEEEEC-CHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHH--HHHHHH-----TTCCEESCTHHHHTC----T
T ss_pred             cccEEEEC-CCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHH--Hhhhhc-----ccCcccCCHHHHhcC----C
Confidence            48999999 699999999887642         89999999997531  222222     145778999999974    7


Q ss_pred             CccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       106 ~~DVVIDfT~p-~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++|+|+++|.+ +.+.+++..|+++|+|||+++++++.++.++|.++|+++++.+
T Consensus        78 diDvVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l  132 (444)
T 3mtj_A           78 EIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMV  132 (444)
T ss_dssp             TCCEEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeE
Confidence            89999999975 8999999999999999999998888888999999999987754

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=99.44  E-value=7.6e-14  Score=117.33  Aligned_cols=118  Identities=20%  Similarity=0.215  Sum_probs=87.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc------CCcEEEEEEecCCCC----cchhhhhcCCCCCC-ee--eeCCHHHHHhc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSVG----EDIGMVCDMEQPLE-IP--VMSDLTMVLGS  100 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~------~~~eLvavvd~~~~g----~~~~~~~g~~~~~~-i~--v~~dl~~~l~~  100 (161)
                      +++||+|+| +|+||+.+++++.+.      ++++|++++|++...    .+...+.....+.+ ++  .+ |.++++..
T Consensus         3 k~irVgIiG-~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~   80 (325)
T 3ing_A            3 KEIRIILMG-TGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG   80 (325)
T ss_dssp             CEEEEEEEC-CSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT
T ss_pred             ceEEEEEEc-CcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC
Confidence            359999999 699999999999876      799999999964311    12222111000011 11  23 66777763


Q ss_pred             ccccCCccEEEEccCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          101 ISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~----~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                          .++|+|||+|++..+    .+++..|+++|+|||+.+.++..++.++|.++|+++++
T Consensus        81 ----~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~  137 (325)
T 3ing_A           81 ----EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSK  137 (325)
T ss_dssp             ----SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             ----CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCC
Confidence                789999999976543    68999999999999999887767889999999999876

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=99.43  E-value=2.1e-13  Score=114.57  Aligned_cols=118  Identities=17%  Similarity=0.128  Sum_probs=88.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-------CcEEEEEEecCCCC-c---chhhhhcCCCCCCee-eeC---CHHHHHh
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHSVG-E---DIGMVCDMEQPLEIP-VMS---DLTMVLG   99 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-------~~eLvavvd~~~~g-~---~~~~~~g~~~~~~i~-v~~---dl~~~l~   99 (161)
                      ++||+|+| +|.||+.+++.+.+.+       +++|++++|++..- .   +..++.....+.+++ +++   |+++++ 
T Consensus         6 ~irvgIiG-~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll-   83 (331)
T 3c8m_A            6 TINLSIFG-LGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL-   83 (331)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH-
T ss_pred             EEeEEEEe-cCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh-
Confidence            49999999 5999999999998776       79999999965311 1   111111100012332 566   999988 


Q ss_pred             cccccCCccEEEEccCch----hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          100 SISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~----~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .    .++|+|+|+|++.    .+.+++..|+++|+|||+....+..++.++|.++|+++++.
T Consensus        84 ~----~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           84 A----RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             H----SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             C----CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            4    6899999999774    77899999999999999975444467889999999998753

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=99.38  E-value=3e-12  Score=108.16  Aligned_cols=123  Identities=15%  Similarity=0.202  Sum_probs=97.9

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHH--HHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIA--VTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~--l~~~~~~eLvavvd~~~~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      .+.+||.|.|++|++++.+++.  +.+.++.++|+.+++...|  +++.  .|.. ..|+|+|++++++...   ..++|
T Consensus         8 ~~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~--~G~~-~~Gvpvy~sv~ea~~~---~p~~D   81 (334)
T 3mwd_B            8 SRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFY--WGHK-EILIPVFKNMADAMRK---HPEVD   81 (334)
T ss_dssp             CTTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEE--ETTE-EEEEEEESSHHHHHHH---CTTCC
T ss_pred             CCCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEe--ccCc-cCCceeeCCHHHHhhc---CCCCc
Confidence            3458999999999999988887  6677999999999976543  4431  2332 4589999999998763   01589


Q ss_pred             EEEEccCchhHHHHHHHHHH-cCCcEEEe-CCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          109 VVIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~-~g~~vVig-ttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ++|+|++|..+.+.+..++. +|++.|+. |+|+++++.++|.++|++.++-.-|
T Consensus        82 laVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliG  136 (334)
T 3mwd_B           82 VLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIG  136 (334)
T ss_dssp             EEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             EEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence            99999999998888777777 99987777 8899998889999999998765543

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=99.32  E-value=5.1e-12  Score=107.36  Aligned_cols=115  Identities=14%  Similarity=0.128  Sum_probs=83.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhc---------
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGS---------  100 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~---~~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~---------  100 (161)
                      +++||+|+| +|.||+.+++.+.+.+   +++|++++|+..  ..   +.   .++ +++.++++++++..         
T Consensus         3 k~i~vgIiG-~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~---~~---~~~~gi~~~~~~~e~l~~~~~~~~did   73 (358)
T 1ebf_A            3 KVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAER--SL---IS---KDFSPLNVGSDWKAALAASTTKTLPLD   73 (358)
T ss_dssp             SEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EE---EC---SSCSCCSCTTCHHHHHHTCCCBCCCHH
T ss_pred             ceEEEEEEe-cCHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hh---hc---cccCCCCccccHHHHHhcccCCCCCHH
Confidence            569999999 5999999999999876   789999999532  11   11   122 45555666666642         


Q ss_pred             -----ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe--CC-CCCHHHHHHHHHHhhhcCee
Q 031341          101 -----ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY--VP-HIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       101 -----~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVig--tt-g~~~e~~~~L~~~A~~~~Vv  158 (161)
                           +.....+|+|||+|....+.+....|+++|+|||+.  ++ ..+.++.++|. +|+++++.
T Consensus        74 ~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~  138 (358)
T 1ebf_A           74 DLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGF  138 (358)
T ss_dssp             HHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCC
T ss_pred             HHHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCE
Confidence                 000012389999997777777778999999999984  33 45668889999 99998754

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=99.30  E-value=5.9e-12  Score=102.72  Aligned_cols=99  Identities=15%  Similarity=0.080  Sum_probs=84.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -|||+++| +|.||+.+++.   . ++||+++++ .+.+    +       .++.+++|++++++      ++|+|++++
T Consensus        12 ~~rV~i~G-~GaIG~~v~~~---~-~leLv~v~~-~k~g----e-------lgv~a~~d~d~lla------~pD~VVe~A   68 (253)
T 1j5p_A           12 HMTVLIIG-MGNIGKKLVEL---G-NFEKIYAYD-RISK----D-------IPGVVRLDEFQVPS------DVSTVVECA   68 (253)
T ss_dssp             CCEEEEEC-CSHHHHHHHHH---S-CCSEEEEEC-SSCC----C-------CSSSEECSSCCCCT------TCCEEEECS
T ss_pred             cceEEEEC-cCHHHHHHHhc---C-CcEEEEEEe-cccc----c-------cCceeeCCHHHHhh------CCCEEEECC
Confidence            38999999 69999999997   4 999999999 3322    2       25567889999884      799999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKAS  156 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigttg~--~~e~~~~L~~~A~~~~  156 (161)
                      .+....+++..+|++|+++|+..+|.  +++..+.|.++|++.+
T Consensus        69 ~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg  112 (253)
T 1j5p_A           69 SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP  112 (253)
T ss_dssp             CHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence            99999999999999999999988763  6666789999999865

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=99.29  E-value=5.6e-12  Score=106.27  Aligned_cols=109  Identities=13%  Similarity=0.116  Sum_probs=84.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~--------~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~  106 (161)
                      ++||+|+| +|.||+.+++.+.+.+        +++|++++|++.. + ..   ++.   ...+++|+++++       +
T Consensus         3 ~irvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~-~-~~---~~~---~~~~~~d~~~ll-------~   66 (332)
T 2ejw_A            3 ALKIALLG-GGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR-K-PR---AIP---QELLRAEPFDLL-------E   66 (332)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT-S-CC---SSC---GGGEESSCCCCT-------T
T ss_pred             eeEEEEEc-CCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH-H-hh---ccC---cccccCCHHHHh-------C
Confidence            58999999 5999999999999887        7999999997532 1 11   110   124578888876       4


Q ss_pred             ccEEEEccCch-hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          107 RAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       107 ~DVVIDfT~p~-~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|+|+++|.+. .+.++++.|+++|||||+.......++.++|.++|+++.++|
T Consensus        67 iDvVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~~~~~  120 (332)
T 2ejw_A           67 ADLVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPFAEEGLIYH  120 (332)
T ss_dssp             CSEEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTTCEEC
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhCCeEE
Confidence            89999999755 457899999999999999654444478889999999885544

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=99.28  E-value=1.6e-11  Score=103.07  Aligned_cols=95  Identities=21%  Similarity=0.248  Sum_probs=74.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCC------------CCCCeeeeCCHHHHHh
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME------------QPLEIPVMSDLTMVLG   99 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~---g~~------------~~~~i~v~~dl~~~l~   99 (161)
                      |+||+|+|+ |+||+.+++.+.++|+++|+++.|++.  .....++   |+.            ...++.++.|+++++.
T Consensus         2 ~irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~--~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~   78 (334)
T 2czc_A            2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKP--DFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (334)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCH--HHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc
Confidence            589999995 999999999999999999999999642  2222211   110            0012366789999884


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                            ++|+|+++|++..+.+.+..++++|++|++..+
T Consensus        79 ------~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sap  111 (334)
T 2czc_A           79 ------KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGG  111 (334)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTT
T ss_pred             ------CCCEEEECCCccccHHHHHHHHHcCCceEeecc
Confidence                  799999999888889999999999999998765

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=99.17  E-value=4.4e-10  Score=93.51  Aligned_cols=110  Identities=11%  Similarity=0.109  Sum_probs=89.5

Q ss_pred             eEEEE-cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           37 KVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~Vi-Ga~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .++|+ |++|++|+.+++.+.+ .++++++.+++...|..         -.|+++|.+++++.++    ..+|+++.|++
T Consensus        15 siaVV~Gasg~~G~~~~~~l~~-~G~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~vD~avI~vP   80 (305)
T 2fp4_A           15 TKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYVP   80 (305)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECCC
T ss_pred             cEEEEECCCCCHHHHHHHHHHH-CCCcEEEEeCCCcCcce---------ECCeeeechHHHhhhc----CCCCEEEEecC
Confidence            46666 9999999999998875 57998877876433311         2478999999999852    37999999999


Q ss_pred             chhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHHhhhc-Ceeec
Q 031341          116 ASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKA-SMVST  160 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~v-Vigttg~~~e~~~~L~~~A~~~-~Vv~t  160 (161)
                      |+.+.+.++.+++.|++. |+-++|++.++..+|.++|++. ++..-
T Consensus        81 ~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~li  127 (305)
T 2fp4_A           81 PPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI  127 (305)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEE
Confidence            999999999999999998 5778899887778999999988 66543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=99.16  E-value=1.5e-10  Score=96.47  Aligned_cols=98  Identities=20%  Similarity=0.252  Sum_probs=75.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCC--CcchhhhhcCCCCCCee-eeCCHHHHHhcccccCCccE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~--g~~~~~~~g~~~~~~i~-v~~dl~~~l~~~~~~~~~DV  109 (161)
                      +++||+|+| +|.+|+.+++.+.+ ++++++++++|+...  +....+      .++++ .+++++++++.- ...++|+
T Consensus         3 ~~irVaIIG-~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~------~~g~~~~~~~~e~ll~~~-~~~~iDv   74 (312)
T 1nvm_B            3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ------RMGVTTTYAGVEGLIKLP-EFADIDF   74 (312)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH------HTTCCEESSHHHHHHHSG-GGGGEEE
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHH------HcCCCcccCCHHHHHhcc-CCCCCcE
Confidence            469999999 69999999999976 999999999997532  233322      23444 356788887510 0036899


Q ss_pred             EEEccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      |+++|.+..+.+++..++++  |++|++.++-
T Consensus        75 V~~atp~~~h~~~a~~al~a~~Gk~Vi~ekp~  106 (312)
T 1nvm_B           75 VFDATSASAHVQNEALLRQAKPGIRLIDLTPA  106 (312)
T ss_dssp             EEECSCHHHHHHHHHHHHHHCTTCEEEECSTT
T ss_pred             EEECCChHHHHHHHHHHHHhCCCCEEEEcCcc
Confidence            99999999999999999999  9999998874

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=99.15  E-value=1.9e-10  Score=96.89  Aligned_cols=92  Identities=16%  Similarity=0.233  Sum_probs=69.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc---------------CCCCCCeeeeCCHHHHHh
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD---------------MEQPLEIPVMSDLTMVLG   99 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g---------------~~~~~~i~v~~dl~~~l~   99 (161)
                      |+||+|+|+ |+||+.+++.+.++|+++|+++.|+... . ....+.               + ...++++++++++++.
T Consensus         1 ~ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~~-~-~~~~a~~~g~~~~~~~~~~~~~-~~~~v~v~~~~e~l~~   76 (340)
T 1b7g_O            1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPN-Y-EAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK   76 (340)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCS-H-HHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH
T ss_pred             CeEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCChH-H-HHHHHHhcCcceecCcCHHHHh-cccccccccCHhHhhc
Confidence            589999997 9999999999999999999999996421 1 111110               1 0234445556666553


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                            ++|+|+++|.+....+++..++++|+++|.=
T Consensus        77 ------~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~  107 (340)
T 1b7g_O           77 ------TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ  107 (340)
T ss_dssp             ------HCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             ------CCCEEEECCCCchhHHHHHHHHHcCCeEEEe
Confidence                  6899999998898999999999999998864

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=99.11  E-value=1.1e-10  Score=98.33  Aligned_cols=96  Identities=20%  Similarity=0.208  Sum_probs=72.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC---------------CCCCeeeeCCHHHHHh
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---------------QPLEIPVMSDLTMVLG   99 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~---------------~~~~i~v~~dl~~~l~   99 (161)
                      |+||+|+|+ |+||+.+++.+.++|+++++++.|....  .....++..               ...++.+..+.++++.
T Consensus         1 mikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~~--~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~   77 (337)
T 1cf2_P            1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPD--FEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD   77 (337)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSCS--HHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred             CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCChh--HHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc
Confidence            689999997 9999999999999999999999996421  111111100               0123444456777774


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg  139 (161)
                            ++|+|+++|.+..+.+++..++++|++||.-++.
T Consensus        78 ------~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~  111 (337)
T 1cf2_P           78 ------EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (337)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS
T ss_pred             ------CCCEEEECCCchhhHHHHHHHHHcCCEEEEecCC
Confidence                  7999999998888899999999999998886654

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=99.06  E-value=5e-10  Score=95.06  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=91.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHH---Hhc-CCcEEEEEEecCCCCcchhhhh-cCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           35 NIKVIINGAVKEIGRAAVIAV---TKA-RGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l---~~~-~~~eLvavvd~~~~g~~~~~~~-g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      .-|++|+| .|.+|+..+|..   .+. +.+++||++ +...|+++++++ |.  +.++|+++|++++++     .++|+
T Consensus        22 ~~~~vi~~-~g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~--~~gipv~~d~~~al~-----~~~d~   92 (350)
T 2g0t_A           22 GTPAAIVA-WGQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPV--RYDVPVVSSVEKAKE-----MGAEV   92 (350)
T ss_dssp             TEEEEEEC-TTTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-C--CSCCBEESSHHHHHH-----TTCCE
T ss_pred             CCCEEEEe-CCCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCC--CCCceeeCCHHHHHh-----cCCCE
Confidence            35899999 799999988855   666 779999999 888999999998 54  579999999999997     47999


Q ss_pred             EEEcc------CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          110 VIDFT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       110 VIDfT------~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +|..+      .|+...+.+..|+++|++||+|-..+ ..+.++|.++|+++++
T Consensus        93 lvig~a~~gg~l~~~~~~~I~~Al~~G~nVvsglh~~-l~~~pel~~~A~~~Gv  145 (350)
T 2g0t_A           93 LIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGT  145 (350)
T ss_dssp             EEECCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTC
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHHHcCCcEEeCChhh-hhCCHHHHHHHHHCCC
Confidence            99654      24455689999999999999987654 4455678889988754

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=99.02  E-value=1.6e-09  Score=91.41  Aligned_cols=101  Identities=20%  Similarity=0.186  Sum_probs=74.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCC-CCeeeeC--CHHHHHhcccccCC
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKA  106 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~-~~i~v~~--dl~~~l~~~~~~~~  106 (161)
                      ..|+||+|+|++|.+|+++++.|.++|+++++++.++.   ..|+++.+....... .+..+.+  +.+++..      +
T Consensus         2 ~~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~------~   75 (337)
T 3dr3_A            2 NAMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP------G   75 (337)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT------T
T ss_pred             CCceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc------C
Confidence            35899999999999999999999999999999999876   778877765321111 1344433  4554433      7


Q ss_pred             ccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCC
Q 031341          107 RAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHI  140 (161)
Q Consensus       107 ~DVVIDfT~p~~~-~~~~~~al~~g~~vVigttg~  140 (161)
                      +|+|+ +++|... .+.+..+++.|..+|-=+..|
T Consensus        76 ~Dvvf-~a~p~~~s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           76 VDVVF-LATAHEVSHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             CSEEE-ECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             CCEEE-ECCChHHHHHHHHHHHHCCCEEEEcCCcc
Confidence            99999 5556555 788899999999988655443

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=98.99  E-value=6.1e-10  Score=94.54  Aligned_cols=112  Identities=14%  Similarity=0.118  Sum_probs=92.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHH---HhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAV---TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l---~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      -|++|.+ .|.+|+..+|..   .+.++.++||++|++..|+++++++|.  +.++|++.|++++++     .++|++|.
T Consensus         8 ~~~vi~~-~g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~--~~gipi~~~l~~al~-----~~~d~lvi   79 (349)
T 2obn_A            8 QRVAILL-HEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGI--YRYVPIVKSVEAALE-----YKPQVLVI   79 (349)
T ss_dssp             CCEEEEC-TTTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCC--CSCCCEESSHHHHGG-----GCCSEEEE
T ss_pred             CcEEEEe-CCCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCC--cCCCCccCCHHHHHh-----CCCCEEEE
Confidence            3688998 699998888777   778889999999988999999999996  689999999999997     48999997


Q ss_pred             cc------CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          113 FT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       113 fT------~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      -+      .|+...+.+..|+++|++||+|--.+ ..+.++|.++|++ ++
T Consensus        80 g~a~~gG~l~~~~~~~i~~Al~~G~~Vvsglh~~-l~~~pel~~~A~~-g~  128 (349)
T 2obn_A           80 GIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTP-LANIPDLNALLQP-GQ  128 (349)
T ss_dssp             CCCCCCC-SCGGGHHHHHHHHHTTCEEEECSSSC-CTTCHHHHHHCCT-TC
T ss_pred             EecCCCCCCCHHHHHHHHHHHHcCCcEEeCccch-hhCCHHHHHHHHc-CC
Confidence            65      35677799999999999999986532 2233458888888 54

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=98.98  E-value=3.1e-09  Score=89.67  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCC-------CCCeeeeC-CHHHHHhccccc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVMS-DLTMVLGSISQS  104 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd-~~~~g~~~~~~~g~~~-------~~~i~v~~-dl~~~l~~~~~~  104 (161)
                      .|+||+|+||+|++|+.+++.+.++|+++|+++.+ +...|+...+..+...       ..++.+.+ +.++ +.     
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-----   76 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HK-----   76 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GT-----
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hc-----
Confidence            46999999999999999999999999999999984 4345555443322100       01222321 3333 32     


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                       ++|+|+.++....+.+.+..++++|+++|.-..
T Consensus        77 -~vDvVf~atp~~~s~~~a~~~~~aG~~VId~s~  109 (350)
T 2ep5_A           77 -DVDVVLSALPNELAESIELELVKNGKIVVSNAS  109 (350)
T ss_dssp             -TCSEEEECCCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             -CCCEEEECCChHHHHHHHHHHHHCCCEEEECCc
Confidence             799999666556778999999999999887554

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.96  E-value=3.9e-09  Score=89.03  Aligned_cols=96  Identities=13%  Similarity=0.045  Sum_probs=70.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~-~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |+||+|+|++|++|+.+++.+.++|++||+++.++...|++..+..+.... .++.+ .++++ +      .++|+|+.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~------~~vDvV~~a   75 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-L------EPADILVLA   75 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-C------CCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccc-cchhH-h------cCCCEEEEc
Confidence            689999999999999999999999999999999865566655543321101 12222 34443 3      279999966


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      +......+.+..++++|+++|.-+.
T Consensus        76 ~g~~~s~~~a~~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           76 LPHGVFAREFDRYSALAPVLVDLSA  100 (345)
T ss_dssp             CCTTHHHHTHHHHHTTCSEEEECSS
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEcCc
Confidence            6666678899999999999876544

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=98.93  E-value=2.9e-09  Score=91.49  Aligned_cols=120  Identities=8%  Similarity=-0.006  Sum_probs=82.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe-cCCC---------Cc------c---hhhhh-cCCCCCCeeee-
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID-SHSV---------GE------D---IGMVC-DMEQPLEIPVM-   91 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd-~~~~---------g~------~---~~~~~-g~~~~~~i~v~-   91 (161)
                      .|+||+|+|+||.+|+.+++.+.++|+ ++++++.. ++..         +.      +   ..++. .+ ...++.++ 
T Consensus         3 ~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l-~~~~~~v~~   81 (388)
T 1r0k_A            3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEAL-AGSSVEAAA   81 (388)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHT-TTCSSEEEE
T ss_pred             CceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHh-ccCCcEEEe
Confidence            368999999889999999999999997 99999844 3210         00      0   00000 00 01112222 


Q ss_pred             --CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341           92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        92 --~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                        +++++++.    .. +|+|++.+.-....+.+..|+++||+|++.+-+......+.|.++|+++++.+
T Consensus        82 g~~~~~el~~----~~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~l  146 (388)
T 1r0k_A           82 GADALVEAAM----MG-ADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTL  146 (388)
T ss_dssp             SHHHHHHHHT----SC-CSEEEECCCSGGGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEE
T ss_pred             CccHHHHHHc----CC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEE
Confidence              33345554    25 99999998667788999999999999999765555556778999999887754

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.89  E-value=8.5e-10  Score=92.79  Aligned_cols=108  Identities=25%  Similarity=0.271  Sum_probs=71.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCH---HHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL---TMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl---~~~l~~~~~~~~~DVV  110 (161)
                      +|||+|+|| |++|+.+++.|.+..  ++. ++|+..  .++......  ...+.+ .+|.   ++++      .+.|+|
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~~~--~v~-~~~~~~--~~~~~~~~~--~~~~~~d~~d~~~l~~~~------~~~DvV   81 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKDEF--DVY-IGDVNN--ENLEKVKEF--ATPLKVDASNFDKLVEVM------KEFELV   81 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTTS--EEE-EEESCH--HHHHHHTTT--SEEEECCTTCHHHHHHHH------TTCSEE
T ss_pred             ccEEEEECC-CHHHHHHHHHHhcCC--CeE-EEEcCH--HHHHHHhcc--CCcEEEecCCHHHHHHHH------hCCCEE
Confidence            489999997 999999999987654  433 444321  111111100  001111 1333   4444      378999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      |.+++|..+.+.++.|+++|+|+|- .+ ++.++..+|.+.|+++++.
T Consensus        82 i~~~p~~~~~~v~~~~~~~g~~yvD-~s-~~~~~~~~l~~~a~~~g~~  127 (365)
T 3abi_A           82 IGALPGFLGFKSIKAAIKSKVDMVD-VS-FMPENPLELRDEAEKAQVT  127 (365)
T ss_dssp             EECCCGGGHHHHHHHHHHHTCEEEE-CC-CCSSCGGGGHHHHHHTTCE
T ss_pred             EEecCCcccchHHHHHHhcCcceEe-ee-ccchhhhhhhhhhccCCce
Confidence            9988888889999999999999875 33 4445566788889888764

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.87  E-value=2e-08  Score=74.34  Aligned_cols=105  Identities=13%  Similarity=0.205  Sum_probs=77.5

Q ss_pred             CCeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      .+.+|+|+|++   |+||+.+++.+. ..+++ +..+++..  .   +      -.|+++|.|++++.+      .+|++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~-~~G~~-V~~vnp~~--~---~------i~G~~~~~s~~el~~------~vDlv   73 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLL-SKGFE-VLPVNPNY--D---E------IEGLKCYRSVRELPK------DVDVI   73 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHH-HTTCE-EEEECTTC--S---E------ETTEECBSSGGGSCT------TCCEE
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHH-HCCCE-EEEeCCCC--C---e------ECCeeecCCHHHhCC------CCCEE
Confidence            35789999965   999999999987 46888 33444321  1   1      137889999999864      79999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      +-+++++.+.+.+..+++.|++.++-.++-.   .++|.++|++.++-+-
T Consensus        74 ii~vp~~~v~~v~~~~~~~g~~~i~~~~~~~---~~~l~~~a~~~Gi~~i  120 (138)
T 1y81_A           74 VFVVPPKVGLQVAKEAVEAGFKKLWFQPGAE---SEEIRRFLEKAGVEYS  120 (138)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCEEEECTTSC---CHHHHHHHHHHTCEEE
T ss_pred             EEEeCHHHHHHHHHHHHHcCCCEEEEcCccH---HHHHHHHHHHCCCEEE
Confidence            9888888888999999999988776655432   3567778888766543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.85  E-value=2.3e-08  Score=74.37  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=78.6

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +.+|+|+|++   |++|+.+++.+. ..++++. -+++.  +.   +      -.|+++|.+++++.+      .+|+++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~-~~G~~v~-~Vnp~--~~---~------i~G~~~y~sl~~l~~------~vDlvv   82 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLL-EHGYDVY-PVNPK--YE---E------VLGRKCYPSVLDIPD------KIEVVD   82 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHH-HTTCEEE-EECTT--CS---E------ETTEECBSSGGGCSS------CCSEEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHH-HCCCEEE-EECCC--CC---e------ECCeeccCCHHHcCC------CCCEEE
Confidence            4689999987   899999999987 5678733 22322  11   1      137889999999864      799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+++++.+.+.+..+++.|++.++-.+|..   .++|.++|++.++-+
T Consensus        83 i~vp~~~~~~vv~~~~~~gi~~i~~~~g~~---~~~l~~~a~~~Gi~v  127 (144)
T 2d59_A           83 LFVKPKLTMEYVEQAIKKGAKVVWFQYNTY---NREASKKADEAGLII  127 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCSEEEECTTCC---CHHHHHHHHHTTCEE
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEECCCch---HHHHHHHHHHcCCEE
Confidence            888888889999999999999888777764   356778888876543

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.83  E-value=1.6e-08  Score=85.32  Aligned_cols=98  Identities=16%  Similarity=0.097  Sum_probs=68.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCC-------CCCeeee-CCHHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVM-SDLTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd-~~~~g~~~~~~~g~~~-------~~~i~v~-~dl~~~l~~~~~~~  105 (161)
                      |+||+|+||+|++|+.+++.+.++|+++|+++.+ +...|+...+..+...       ..++.+. .++++.++     .
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~   82 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-----E   82 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-----T
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-----C
Confidence            3899999999999999999999999999999985 4445665544332110       0112221 24444332     2


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ++|+|+.++......+.+..+++.|++||.-.
T Consensus        83 ~~DvV~~atp~~~~~~~a~~~~~aG~~VId~s  114 (354)
T 1ys4_A           83 DVDIVFSALPSDLAKKFEPEFAKEGKLIFSNA  114 (354)
T ss_dssp             TCCEEEECCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CCCEEEECCCchHHHHHHHHHHHCCCEEEECC
Confidence            79999977666667889999999999977543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=98.80  E-value=1.2e-08  Score=86.40  Aligned_cols=95  Identities=13%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC---CCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP---LEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~---~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ++||+|+|++|++|+.+++.+.++|+++++++.++...|....+..+....   .++.+ .+ ++.+      .++|+|+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~------~~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADF------STVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCG------GGCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHh------cCCCEEE
Confidence            389999999999999999999999999999999875556555443321100   12222 22 3333      2689999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      .++......+.+..+ ++|+.+|.-+.
T Consensus        88 ~atp~~~s~~~a~~~-~aG~~VId~sa  113 (359)
T 1xyg_A           88 CCLPHGTTQEIIKEL-PTALKIVDLSA  113 (359)
T ss_dssp             ECCCTTTHHHHHHTS-CTTCEEEECSS
T ss_pred             EcCCchhHHHHHHHH-hCCCEEEECCc
Confidence            666666778999988 99998776444

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.79  E-value=2.1e-08  Score=74.71  Aligned_cols=107  Identities=12%  Similarity=0.129  Sum_probs=77.3

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +.+|+|+|++   |+||..+++.+. ..+++ +..+++...|..         -.|+++|.+++++.+      .+|+++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~-~~G~~-v~~vnp~~~g~~---------i~G~~~~~sl~el~~------~~Dlvi   75 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLL-DQGYH-VIPVSPKVAGKT---------LLGQQGYATLADVPE------KVDMVD   75 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHH-HHTCC-EEEECSSSTTSE---------ETTEECCSSTTTCSS------CCSEEE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHH-HCCCE-EEEeCCcccccc---------cCCeeccCCHHHcCC------CCCEEE
Confidence            4579999976   899999999987 44677 444554332221         247889999998764      799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      -+++++.+.+.+..+++.|+.-|+-.++-.   .++|.++|++.++-+-|
T Consensus        76 i~vp~~~v~~v~~~~~~~g~~~i~i~~~~~---~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           76 VFRNSEAAWGVAQEAIAIGAKTLWLQLGVI---NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             CCSCSTHHHHHHHHHHHHTCCEEECCTTCC---CHHHHHHHHTTTCEEEC
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCChH---HHHHHHHHHHcCCEEEc
Confidence            888888888888889999966554444322   45688888888776544

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=98.79  E-value=1.7e-08  Score=85.68  Aligned_cols=96  Identities=15%  Similarity=0.076  Sum_probs=70.3

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccEEE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DVVI  111 (161)
                      --||||+|+|++|..|+++++.|.++|.+||+.+.++...|+...+..... ..++.+. .+.+++..      ++|+|+
T Consensus        11 ~~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~-~~~l~~~~~~~~~~~~------~~Dvvf   83 (351)
T 1vkn_A           11 HHMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPST-LENSILSEFDPEKVSK------NCDVLF   83 (351)
T ss_dssp             -CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGG-CCCCBCBCCCHHHHHH------HCSEEE
T ss_pred             cceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhh-ccCceEEeCCHHHhhc------CCCEEE
Confidence            358999999999999999999999999999999988777888887654322 1233332 24555433      689999


Q ss_pred             EccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031341          112 DFTDASTV-YDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       112 DfT~p~~~-~~~~~~al~~g~~vVigtt  138 (161)
                       |+.|+.. .+.+..+  .|+.||--..
T Consensus        84 -~alp~~~s~~~~~~~--~g~~VIDlSs  108 (351)
T 1vkn_A           84 -TALPAGASYDLVREL--KGVKIIDLGA  108 (351)
T ss_dssp             -ECCSTTHHHHHHTTC--CSCEEEESSS
T ss_pred             -ECCCcHHHHHHHHHh--CCCEEEECCh
Confidence             7777666 4666655  8888775443

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=98.77  E-value=1.3e-08  Score=85.74  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=67.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCC---cch--hhhhcCCC--------C-------CCeeeeC-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVG---EDI--GMVCDMEQ--------P-------LEIPVMS-   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-~~~g---~~~--~~~~g~~~--------~-------~~i~v~~-   92 (161)
                      ++||+|+|+ |++||.+++.+.++|++||+++.|+ ....   .-.  ....|...        .       ..+.++. 
T Consensus         3 ~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~   81 (337)
T 3e5r_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECC
T ss_pred             ceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEec
Confidence            379999997 9999999999999999999999984 1110   000  00011000        0       0223343 


Q ss_pred             -CHHHHH-hcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031341           93 -DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (161)
Q Consensus        93 -dl~~~l-~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVigtt  138 (161)
                       |++++. ..    .++|+|+++|......+.+..++++|++ +|+-.+
T Consensus        82 ~dp~~l~w~~----~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~p  126 (337)
T 3e5r_O           82 RNPDEIPWAE----AGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAP  126 (337)
T ss_dssp             SCGGGCCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             CChHHccccc----cCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecC
Confidence             666651 11    3799999999888889999999999984 666554

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=98.74  E-value=2.4e-08  Score=84.78  Aligned_cols=96  Identities=17%  Similarity=0.183  Sum_probs=70.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC----C---CCeeee-CCHHHHHhcccccC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----P---LEIPVM-SDLTMVLGSISQSK  105 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~----~---~~i~v~-~dl~~~l~~~~~~~  105 (161)
                      .++||+|+|++|..|+++++.|.++|.++|+.+.++...|++..+...+..    +   .+..+. .+.++ +      .
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------~   78 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------D   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------T
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------c
Confidence            369999999999999999999999999999999887778888776432100    0   122222 12222 3      2


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                      ++|+|+.++......+.+..+++.|..+|.=
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDl  109 (359)
T 4dpk_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISN  109 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEEC
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEc
Confidence            7999995554455578899999999998853

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=98.74  E-value=2.4e-08  Score=84.78  Aligned_cols=96  Identities=17%  Similarity=0.183  Sum_probs=70.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC----C---CCeeee-CCHHHHHhcccccC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----P---LEIPVM-SDLTMVLGSISQSK  105 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~----~---~~i~v~-~dl~~~l~~~~~~~  105 (161)
                      .++||+|+|++|..|+++++.|.++|.++|+.+.++...|++..+...+..    +   .+..+. .+.++ +      .
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------~   78 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------D   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------T
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------c
Confidence            369999999999999999999999999999999887778888776432100    0   122222 12222 3      2


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                      ++|+|+.++......+.+..+++.|..+|.=
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDl  109 (359)
T 4dpl_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISN  109 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEEC
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEc
Confidence            7999995554455578899999999998853

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.74  E-value=3.4e-08  Score=78.21  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ...||+|+|+ |++|+.+++.+....+++++|++|.+..  ..+..     -.++++  ++++++++.    + ++|+++
T Consensus        79 ~~~rV~IIGa-G~~G~~la~~~~~~~g~~iVg~~D~dp~--k~g~~-----i~gv~V~~~~dl~ell~----~-~ID~Vi  145 (211)
T 2dt5_A           79 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPE--KVGRP-----VRGGVIEHVDLLPQRVP----G-RIEIAL  145 (211)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTT--TTTCE-----ETTEEEEEGGGHHHHST----T-TCCEEE
T ss_pred             CCCEEEEECc-cHHHHHHHHhHhhcCCcEEEEEEeCCHH--HHhhh-----hcCCeeecHHhHHHHHH----c-CCCEEE
Confidence            3489999996 9999999996332238999999995431  11111     124444  678888876    3 799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEE-EeCC
Q 031341          112 DFTDASTVYDNVKQATAFGMRSV-VYVP  138 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vV-igtt  138 (161)
                      .++++..+.+.+..++++|++.| ..+|
T Consensus       146 IA~Ps~~~~ei~~~l~~aGi~~Ilnf~P  173 (211)
T 2dt5_A          146 LTVPREAAQKAADLLVAAGIKGILNFAP  173 (211)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             EeCCchhHHHHHHHHHHcCCCEEEECCc
Confidence            67766666789999999999955 4454

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=98.74  E-value=4.8e-08  Score=90.75  Aligned_cols=122  Identities=16%  Similarity=0.197  Sum_probs=93.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHh-----cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTK-----ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~-----~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      .+.+||.|.|++|+   .+.+++..     .++.++|+.+++...|.....+.|.. ..|+|+|.+++++...   ..++
T Consensus       494 ~~~trviV~G~tg~---~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~~-~~Gvp~y~sv~ea~~~---~p~~  566 (829)
T 3pff_A          494 SRHTKAIVWGMQTR---AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHK-EILIPVFKNMADAMRK---HPEV  566 (829)
T ss_dssp             CTTCCEEEESCCHH---HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTE-EEEEEEESSHHHHHHH---CTTC
T ss_pred             cCCCeEEEECCcHH---HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecCC-cCCcccCCcHHHHhhc---cCCC
Confidence            45599999999877   44444443     37899999999765543433333442 5689999999998862   0158


Q ss_pred             cEEEEccCchhHHHHHHHHHH-cCCcEEE-eCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          108 AVVIDFTDASTVYDNVKQATA-FGMRSVV-YVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~-~g~~vVi-gttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      |++|.|.+|..+.+.++.|++ .|++.++ -|.|+...+.++|.++|++.++-.-|
T Consensus       567 DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g~rliG  622 (829)
T 3pff_A          567 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIG  622 (829)
T ss_dssp             CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             cEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCEEEc
Confidence            999999999999999999999 9998654 47799988888999999998765443

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=98.73  E-value=2.9e-08  Score=83.42  Aligned_cols=92  Identities=12%  Similarity=0.035  Sum_probs=66.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +|+||+|+||+|++|+.+++.+.++  |+++++++.++...|+... +.    ..++.+ .+++....     .++|+|+
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-~~----~~~i~~-~~~~~~~~-----~~vDvVf   70 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-FN----GKTVRV-QNVEEFDW-----SQVHIAL   70 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-ET----TEEEEE-EEGGGCCG-----GGCSEEE
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-ec----CceeEE-ecCChHHh-----cCCCEEE
Confidence            4799999999999999999999988  8999999998655555432 11    123333 22322111     2689999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEe
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                      .++......+.+..+++.|+.+|.-
T Consensus        71 ~a~g~~~s~~~a~~~~~~G~~vId~   95 (336)
T 2r00_A           71 FSAGGELSAKWAPIAAEAGVVVIDN   95 (336)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             ECCCchHHHHHHHHHHHcCCEEEEc
Confidence            7766667789999999999987753

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.70  E-value=5.3e-08  Score=72.13  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +-+|+|+|++   |++|+.+++.+. ..+++ +.-+++...+.   +      -.|+++|.+++++.+      .+|+++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~-~~G~~-v~~vnp~~~~~---~------i~G~~~~~sl~el~~------~vDlav   75 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLR-EQGYR-VLPVNPRFQGE---E------LFGEEAVASLLDLKE------PVDILD   75 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHH-HTTCE-EEEECGGGTTS---E------ETTEECBSSGGGCCS------CCSEEE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHH-HCCCE-EEEeCCCcccC---c------CCCEEecCCHHHCCC------CCCEEE
Confidence            4579999987   899999999986 56787 33344321121   1      137899999999763      799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      -+++++.+.+.++.+.+.|+..++-.+|+..   +++.++|++.++-
T Consensus        76 i~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~---~~~~~~a~~~Gir  119 (140)
T 1iuk_A           76 VFRPPSALMDHLPEVLALRPGLVWLQSGIRH---PEFEKALKEAGIP  119 (140)
T ss_dssp             ECSCHHHHTTTHHHHHHHCCSCEEECTTCCC---HHHHHHHHHTTCC
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCCcCH---HHHHHHHHHcCCE
Confidence            8888888888999999999887777777642   5677788877543

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=98.68  E-value=5.3e-08  Score=83.40  Aligned_cols=97  Identities=21%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCC-------CCeeee-CCHHHHHhccccc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQP-------LEIPVM-SDLTMVLGSISQS  104 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd-~~~~g~~~~~~~g~~~~-------~~i~v~-~dl~~~l~~~~~~  104 (161)
                      .|+||+|+|++|..|+++++.|.++|.++|+.+.. +...|+...+...+...       .+..+. .+.++.+.     
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~-----   92 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFL-----   92 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGG-----
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcc-----
Confidence            35899999999999999999999999999998864 55678877655322100       122221 11111232     


Q ss_pred             CCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341          105 KARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt  137 (161)
                       ++|+|+ |+.|... .+.+..+++.|..+|-=+
T Consensus        93 -~~Dvvf-~alp~~~s~~~~~~~~~~G~~VIDlS  124 (381)
T 3hsk_A           93 -ECDVVF-SGLDADVAGDIEKSFVEAGLAVVSNA  124 (381)
T ss_dssp             -GCSEEE-ECCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             -cCCEEE-ECCChhHHHHHHHHHHhCCCEEEEcC
Confidence             689999 5556554 688899999999988544

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.68  E-value=2.3e-08  Score=84.41  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=65.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch--hhhh-----cC---------CCCCCeeeeCCHHHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI--GMVC-----DM---------EQPLEIPVMSDLTMVL   98 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~--~~~~-----g~---------~~~~~i~v~~dl~~~l   98 (161)
                      |+||+|+|+ |++||.+++.+.++++++|+++.|... ....  ..+.     |.         ....++.+..+.++++
T Consensus         2 mikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~-~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~   79 (343)
T 2yyy_A            2 PAKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKP-DFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDII   79 (343)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSC-SHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTG
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCH-HHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhc
Confidence            589999996 999999999999999999999998531 1100  0000     00         0011233334455555


Q ss_pred             hcccccCCccEEEEccCchhHHHHHH-HHHHcCCcEEEeCC
Q 031341           99 GSISQSKARAVVIDFTDASTVYDNVK-QATAFGMRSVVYVP  138 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~~~~~~-~al~~g~~vVigtt  138 (161)
                      .      ++|+|+++|......+.+. .++++|++||+-.+
T Consensus        80 ~------~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap  114 (343)
T 2yyy_A           80 E------DADIVVDGAPKKIGKQNLENIYKPHKVKAILQGG  114 (343)
T ss_dssp             G------GCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTT
T ss_pred             c------CCCEEEECCCccccHHHHHHHHHHCCCEEEECCC
Confidence            3      7999997776666688885 99999999887443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.65  E-value=1.2e-07  Score=65.56  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=69.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eC---CHHHHHhcccccCC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MS---DLTMVLGSISQSKA  106 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~---dl~~~l~~~~~~~~  106 (161)
                      .++||+|+|+ |.||+.+++.+......+++ +++++.  .+...+.    ..++..    ..   ++++++      .+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~-~~~r~~--~~~~~~~----~~~~~~~~~d~~~~~~~~~~~------~~   69 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVT-VADHDL--AALAVLN----RMGVATKQVDAKDEAGLAKAL------GG   69 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEE-EEESCH--HHHHHHH----TTTCEEEECCTTCHHHHHHHT------TT
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHH----hCCCcEEEecCCCHHHHHHHH------cC
Confidence            3579999998 99999999999866437765 455432  1111111    112211    12   233444      37


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~  155 (161)
                      +|+||+++.+....+.+..+.+.|++.+.-+  -+.+..+.+.+++++.
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~a  116 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKAAKAAGAHYFDLT--EDVAATNAVRALVEDS  116 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEECCC--SCHHHHHHHHHHHHCC
T ss_pred             CCEEEECCCchhhHHHHHHHHHhCCCEEEec--CcHHHHHHHHHHHHhh
Confidence            9999999877777889999999999987533  2345666777776654

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.65  E-value=9.5e-08  Score=75.88  Aligned_cols=90  Identities=23%  Similarity=0.325  Sum_probs=60.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHH-HHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIA-VTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~-l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ..||+|+|+ |++|+.+++. ....++++++|++|.+..  ..+...     .++++  ++++++++.+     . |+++
T Consensus        85 ~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp~--k~g~~i-----~gv~V~~~~dl~eli~~-----~-D~Vi  150 (215)
T 2vt3_A           85 MTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINES--KIGTEV-----GGVPVYNLDDLEQHVKD-----E-SVAI  150 (215)
T ss_dssp             --CEEEECC-SHHHHHHHHCC------CCEEEEEESCTT--TTTCEE-----TTEEEEEGGGHHHHCSS-----C-CEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCHH--HHHhHh-----cCCeeechhhHHHHHHh-----C-CEEE
Confidence            478999996 9999999995 345779999999996431  112111     23443  5788888862     4 9998


Q ss_pred             EccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031341          112 DFTDASTVYDNVKQATAFGMR-SVVYVP  138 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~-vVigtt  138 (161)
                      .+++...+.+.+..++++|++ ++..+|
T Consensus       151 IAvPs~~~~ei~~~l~~aGi~~Ilnf~P  178 (215)
T 2vt3_A          151 LTVPAVAAQSITDRLVALGIKGILNFTP  178 (215)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EecCchhHHHHHHHHHHcCCCEEEEcCc
Confidence            566556667899999999999 555554

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=98.64  E-value=4.5e-08  Score=82.35  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=66.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhh------hcCC-------------CCCCeeee--C
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMV------CDME-------------QPLEIPVM--S   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-~~~g~~~~~~------~g~~-------------~~~~i~v~--~   92 (161)
                      |+||+|+|+ |++|+.+++.+.++|++||+++.|+ ...+. ...+      .|..             ....+.++  .
T Consensus         3 ~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~-~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~   80 (335)
T 1u8f_O            3 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNY-MVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQER   80 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHH-HHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             ceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHH-HHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecC
Confidence            479999995 9999999999999999999999984 21111 0000      0000             00122334  3


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeC
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYV  137 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g-~~vVigt  137 (161)
                      |++++...   +.++|+|+++|......+.+..++++| +.|++..
T Consensus        81 d~~~l~~~---~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSa  123 (335)
T 1u8f_O           81 DPSKIKWG---DAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISA  123 (335)
T ss_dssp             SGGGCCTT---TTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESS
T ss_pred             CHHHCccc---cCCCCEEEECCCchhhHHHHHHHHhCCCeEEEecc
Confidence            66665210   147999998888888899999999999 5555544

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.62  E-value=1e-07  Score=80.77  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=67.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-----CcEEEEEEecCCCCcchhhhhcCCCC-CCeeee-CCHHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-----GMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVM-SDLTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-----~~eLvavvd~~~~g~~~~~~~g~~~~-~~i~v~-~dl~~~l~~~~~~~~~  107 (161)
                      |+||+|+||+|++|+.+++.+.+++     .++++++.++...|+...+..+.... .++.+. .+. +.+.      ++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~------~~   81 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLG------GH   81 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHT------TC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhc------CC
Confidence            5899999999999999999999999     99999998865566655442211000 122222 232 3342      79


Q ss_pred             cEEEEccCchhHHHHHHHHHHcCCcEEEeCCCC
Q 031341          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (161)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~  140 (161)
                      |+|+.++......+.+..+ +.|+.+|.=+..+
T Consensus        82 DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~  113 (352)
T 2nqt_A           82 DAVFLALPHGHSAVLAQQL-SPETLIIDCGADF  113 (352)
T ss_dssp             SEEEECCTTSCCHHHHHHS-CTTSEEEECSSTT
T ss_pred             CEEEECCCCcchHHHHHHH-hCCCEEEEECCCc
Confidence            9999555445567888888 9998877644433

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.61  E-value=9.4e-08  Score=75.97  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=65.9

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++|+||+|+| +|+||+.+++.+.+. +.+ +.++|++.  .....+.   ..+++.+++++++++.      ++|+||.
T Consensus         1 ~~~m~i~iiG-~G~mG~~~a~~l~~~-g~~-v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~~------~~D~Vi~   66 (259)
T 2ahr_A            1 SNAMKIGIIG-VGKMASAIIKGLKQT-PHE-LIISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVIL   66 (259)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHTTS-SCE-EEEECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEE
T ss_pred             CCccEEEEEC-CCHHHHHHHHHHHhC-CCe-EEEECCCH--HHHHHHH---HHcCCEeeCCHHHHHh------cCCEEEE
Confidence            3568999999 599999999998754 454 56788642  1222221   1235667789999885      7999998


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeC-CCCCHHHHHHH
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSAL  148 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigt-tg~~~e~~~~L  148 (161)
                      +++|..+.+.+.. ++.|+. |+-+ .+.+.++++++
T Consensus        67 ~v~~~~~~~v~~~-l~~~~~-vv~~~~~~~~~~l~~~  101 (259)
T 2ahr_A           67 GIKPQLFETVLKP-LHFKQP-IISMAAGISLQRLATF  101 (259)
T ss_dssp             CSCGGGHHHHHTT-SCCCSC-EEECCTTCCHHHHHHH
T ss_pred             EeCcHhHHHHHHH-hccCCE-EEEeCCCCCHHHHHHh
Confidence            8877766665543 346764 4545 47877654443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.55  E-value=6.2e-08  Score=75.98  Aligned_cols=104  Identities=19%  Similarity=-0.000  Sum_probs=62.2

Q ss_pred             eEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccc
Q 031341           24 FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ  103 (161)
Q Consensus        24 ~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~  103 (161)
                      |-.|.+.....|+||+|+| +|+||+.+++.+.+ .+.++..+++++..  ....+.   ...++..+.+..+.+.    
T Consensus        12 ~~~~~~~~~m~mmkI~IIG-~G~mG~~la~~l~~-~g~~V~~v~~r~~~--~~~~l~---~~~g~~~~~~~~~~~~----   80 (220)
T 4huj_A           12 DLGTENLYFQSMTTYAIIG-AGAIGSALAERFTA-AQIPAIIANSRGPA--SLSSVT---DRFGASVKAVELKDAL----   80 (220)
T ss_dssp             -----CTTGGGSCCEEEEE-CHHHHHHHHHHHHH-TTCCEEEECTTCGG--GGHHHH---HHHTTTEEECCHHHHT----
T ss_pred             cccccchhhhcCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEECCCHH--HHHHHH---HHhCCCcccChHHHHh----
Confidence            3445555556679999999 59999999999875 57888877776431  222221   1223334444444453    


Q ss_pred             cCCccEEEEccCchhHHHHHHHHH-HcCCcEEEeCCCC
Q 031341          104 SKARAVVIDFTDASTVYDNVKQAT-AFGMRSVVYVPHI  140 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al-~~g~~vVigttg~  140 (161)
                        .+|+||.++.|....+.+.... ..++.+|.-+.++
T Consensus        81 --~aDvVilavp~~~~~~v~~~l~~~~~~ivi~~~~g~  116 (220)
T 4huj_A           81 --QADVVILAVPYDSIADIVTQVSDWGGQIVVDASNAI  116 (220)
T ss_dssp             --TSSEEEEESCGGGHHHHHTTCSCCTTCEEEECCCCB
T ss_pred             --cCCEEEEeCChHHHHHHHHHhhccCCCEEEEcCCCC
Confidence              7999997777776666654321 1355555545455

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.55  E-value=6.4e-07  Score=73.96  Aligned_cols=130  Identities=12%  Similarity=0.098  Sum_probs=70.7

Q ss_pred             cccccccccceeEEeeCC---CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee
Q 031341           13 HHISQNVKAKRFISCSTN---PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP   89 (161)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~---~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~   89 (161)
                      ||-+.|.+-++-.+....   +...++||+|+| +|.||+.+++.+. ..++++. ++|++.  .....+.    +.|+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG-~G~mG~~~a~~l~-~~G~~V~-~~dr~~--~~~~~l~----~~g~~   76 (320)
T 4dll_A            6 HHSSGVDLGTENLYFQSMTVESDPYARKITFLG-TGSMGLPMARRLC-EAGYALQ-VWNRTP--ARAASLA----ALGAT   76 (320)
T ss_dssp             -----------------------CCCSEEEEEC-CTTTHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHH----TTTCE
T ss_pred             cccccccccccccceechhhccccCCCEEEEEC-ccHHHHHHHHHHH-hCCCeEE-EEcCCH--HHHHHHH----HCCCE
Confidence            444555554443333322   122458999999 5999999999987 4578855 567542  1222222    34677


Q ss_pred             eeCCHHHHHhcccccCCccEEEEccCchhHH-HHH-----HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341           90 VMSDLTMVLGSISQSKARAVVIDFTDASTVY-DNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus        90 v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~-~~~-----~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .++++++++.      ++|+||.+.+..... +.+     ...+..|..+|. ++..+++..+++.+..++.++-
T Consensus        77 ~~~~~~e~~~------~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~~  144 (320)
T 4dll_A           77 IHEQARAAAR------DADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLD-MASITPREARDHAARLGALGIA  144 (320)
T ss_dssp             EESSHHHHHT------TCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCE
T ss_pred             eeCCHHHHHh------cCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCCE
Confidence            8899999885      799999555433333 322     123445655554 4445667777777776665543

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=98.53  E-value=2.4e-07  Score=78.16  Aligned_cols=98  Identities=21%  Similarity=0.171  Sum_probs=66.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh---c----CCCCCCeeee-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC---D----MEQPLEIPVM-   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~-------------~~~g~~~~~~~---g----~~~~~~i~v~-   91 (161)
                      |+||+|+|+ |++||.+++.+.++  |++||+++.|.             +..|+..+++.   +    +. ...+.++ 
T Consensus         1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~-g~~i~v~~   78 (337)
T 1rm4_O            1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVD-GKVIKVVS   78 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEET-TEEEEEEC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEEC-CeEEEEEe
Confidence            589999997 99999999999988  99999999852             12233222211   1    10 1123333 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                       .|++++...   +.++|+|+++|......+.+...++.|..+|+=+
T Consensus        79 ~~dp~~i~w~---~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iS  122 (337)
T 1rm4_O           79 DRNPVNLPWG---DMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLIT  122 (337)
T ss_dssp             CSCGGGSCHH---HHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEES
T ss_pred             cCChhhCccc---ccCCCEEEECCCchhhHHHHHHHHHcCCEEEEEC
Confidence             345443110   1278999988877777899999999998888644

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=98.53  E-value=2.2e-07  Score=79.15  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=67.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVI  111 (161)
                      ++||+|+|++|..|+++++.|.++  |..+|..+.++...|+... +.+    .+..+. +++ +.+      .++|+|+
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~----~~~~~~-~~~~~~~------~~~Dvvf   69 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKD----QDITIE-ETTETAF------EGVDIAL   69 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETT----EEEEEE-ECCTTTT------TTCSEEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecC----CCceEe-eCCHHHh------cCCCEEE
Confidence            589999999999999999999887  8999999888766776654 221    123332 111 223      3799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      .++......+.+..+++.|..+|--+.
T Consensus        70 ~a~~~~~s~~~a~~~~~~G~~vIDlSa   96 (366)
T 3pwk_A           70 FSAGSSTSAKYAPYAVKAGVVVVDNTS   96 (366)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             ECCChHhHHHHHHHHHHCCCEEEEcCC
Confidence            666555567899999999998876444

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.53  E-value=2e-07  Score=74.34  Aligned_cols=97  Identities=14%  Similarity=0.133  Sum_probs=68.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++||+|+|+ |+||+.+++.+... +++++.++|++.  .....+.   ...++.+++++++++.      ++|+||.++
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~-g~~~v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~~------~~Dvvi~av   76 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRK-GFRIVQVYSRTE--ESARELA---QKVEAEYTTDLAEVNP------YAKLYIVSL   76 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSH--HHHHHHH---HHTTCEEESCGGGSCS------CCSEEEECC
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHC-CCeEEEEEeCCH--HHHHHHH---HHcCCceeCCHHHHhc------CCCEEEEec
Confidence            479999995 99999999998754 788888888642  1222222   1236677888888764      799999888


Q ss_pred             CchhHHHHHHHHHH---cCCcEEEeCCCCCHHH
Q 031341          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLET  144 (161)
Q Consensus       115 ~p~~~~~~~~~al~---~g~~vVigttg~~~e~  144 (161)
                      ++..+.+.+....+   .+..+|..+++++.+.
T Consensus        77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH
Confidence            77766555554443   5666777677777554

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=98.51  E-value=2.9e-07  Score=77.36  Aligned_cols=99  Identities=22%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc-----chhhhhcCC-------------CCCCeeeeC--CH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-----DIGMVCDME-------------QPLEIPVMS--DL   94 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~-----~~~~~~g~~-------------~~~~i~v~~--dl   94 (161)
                      |+||+|+| +|++|++++|.+.++|++||+++.+....+.     +.....|..             ....+.++.  |+
T Consensus         1 ~ikVgI~G-~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEEC-cCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            58999999 5999999999999999999999998532211     000000100             000122332  45


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      +++...   +.++|+|+++|......+.+...++.|..+|.=+
T Consensus        80 ~~i~w~---~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlS  119 (330)
T 1gad_O           80 ANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMT  119 (330)
T ss_dssp             GGGCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEES
T ss_pred             hhCccc---cccCCEEEECCCccccHHHHHHHHHCCCEEEEEC
Confidence            543110   0268999988877777899999999999877644

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=98.49  E-value=2.9e-07  Score=77.36  Aligned_cols=91  Identities=16%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~--~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVI  111 (161)
                      ++||+|+||+|++|+.+++.+.  .+|.++++++.++...|+... +.|    .++.+. +++ +.+      .++|+|+
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-~~g----~~i~~~-~~~~~~~------~~~DvV~   73 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAE----SSLRVG-DVDSFDF------SSVGLAF   73 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETT----EEEECE-EGGGCCG------GGCSEEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-cCC----cceEEe-cCCHHHh------cCCCEEE
Confidence            3799999999999999999998  779999999988644444322 111    123332 222 113      2689999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      .++......+.+..+++.|+.+|.=+
T Consensus        74 ~a~g~~~s~~~a~~~~~aG~kvId~S   99 (340)
T 2hjs_A           74 FAAAAEVSRAHAERARAAGCSVIDLS   99 (340)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             EcCCcHHHHHHHHHHHHCCCEEEEeC
Confidence            66655666789999999999877533

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=98.48  E-value=2.9e-07  Score=77.81  Aligned_cols=90  Identities=14%  Similarity=0.109  Sum_probs=66.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVID  112 (161)
                      +||+|+|++|..|+++++.|.++  |..+++.+.++...|+... +.|    .+..+. +++ +.+      .++|+|+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~----~~~~~~-~~~~~~~------~~~Dvvf~   69 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRG----QEIEVE-DAETADP------SGLDIALF   69 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETT----EEEEEE-ETTTSCC------TTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecC----CceEEE-eCCHHHh------ccCCEEEE
Confidence            79999999999999999999988  8999999888767777665 221    123332 222 223      37999996


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ++......+.+..+++.|..+|--+
T Consensus        70 a~~~~~s~~~a~~~~~~G~~vID~S   94 (344)
T 3tz6_A           70 SAGSAMSKVQAPRFAAAGVTVIDNS   94 (344)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             CCChHHHHHHHHHHHhCCCEEEECC
Confidence            6655566789999999999887544

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=98.47  E-value=2.1e-07  Score=79.09  Aligned_cols=98  Identities=17%  Similarity=0.100  Sum_probs=62.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCc--c---hhhhhcCC-------------CCCCeeeeC--
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGE--D---IGMVCDME-------------QPLEIPVMS--   92 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd-~~~~g~--~---~~~~~g~~-------------~~~~i~v~~--   92 (161)
                      .|+||+|+|+ |++|+.++|.+.++|++||+++.| ....+.  .   .....|..             ....+.++.  
T Consensus        16 ~~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   94 (354)
T 3cps_A           16 FQGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAK   94 (354)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCS
T ss_pred             cceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecC
Confidence            4699999997 999999999999999999999998 321110  0   00000100             001233442  


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      |++++...   +.++|+|+++|......+.+...++.|.. +|+
T Consensus        95 dp~~i~w~---~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVI  135 (354)
T 3cps_A           95 DPAEIPWG---ASGAQIVCESTGVFTTEEKASLHLKGGAKKVII  135 (354)
T ss_dssp             CGGGCCHH---HHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE
T ss_pred             ChHHCCcc---cCCCCEEEECCCchhhHHHHHHHHHcCCcEEEE
Confidence            55554210   02789999888777778999999999973 454

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=98.47  E-value=1.7e-06  Score=73.56  Aligned_cols=92  Identities=12%  Similarity=0.038  Sum_probs=62.4

Q ss_pred             CeeEEEEcCCCHHHHHHHH-HHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccE
Q 031341           35 NIKVIINGAVKEIGRAAVI-AVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~-~l~~~--~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DV  109 (161)
                      |+||+|+||+|++|+++++ .+.++  +..++..+..+ ..|+....+.|    .++.+.  .+.++ +.      ++|+
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~~~g----~~i~~~~~~~~~~-~~------~~Dv   68 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPSFGG----TTGTLQDAFDLEA-LK------ALDI   68 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCGGGT----CCCBCEETTCHHH-HH------TCSE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccccCC----CceEEEecCChHH-hc------CCCE
Confidence            6899999999999999999 55544  34666655554 36665432222    234443  24444 43      7999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031341          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~-vVigtt  138 (161)
                      |++++......+.+..+++.|++ +|+..+
T Consensus        69 Vf~a~g~~~s~~~a~~~~~~G~k~vVID~s   98 (367)
T 1t4b_A           69 IVTCQGGDYTNEIYPKLRESGWQGYWIDAA   98 (367)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EEECCCchhHHHHHHHHHHCCCCEEEEcCC
Confidence            99777666778999999999973 566544

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.46  E-value=9.2e-07  Score=72.22  Aligned_cols=128  Identities=16%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             cccccccccceeEEeeCCCCC---CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee
Q 031341           13 HHISQNVKAKRFISCSTNPPQ---SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP   89 (161)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~---~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~   89 (161)
                      ||-|..|.-+.--.+-+++..   .++||+|+| .|.||+.+++.+.. .++++ .++|++.  .....+.    +.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG-~G~mG~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~   75 (316)
T 2uyy_A            5 HHHSSGVDLGTENLYFQSMGSITPTDKKIGFLG-LGLMGSGIVSNLLK-MGHTV-TVWNRTA--EKCDLFI----QEGAR   75 (316)
T ss_dssp             --------------------CCCCCSSCEEEEC-CSHHHHHHHHHHHH-TTCCE-EEECSSG--GGGHHHH----HTTCE
T ss_pred             cccccccCccccceeecCCCCCCCCCCeEEEEc-ccHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HcCCE
Confidence            455555554443333333222   247999999 59999999999874 56775 4677542  1222222    23566


Q ss_pred             eeCCHHHHHhcccccCCccEEEEccC-chhHHHHHHH------HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341           90 VMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus        90 v~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~------al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      ++.++++++.      ++|+||.+++ |....+.+..      .+..|..+|.-++ .+.+..++|.+...+.+
T Consensus        76 ~~~~~~~~~~------~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~~  142 (316)
T 2uyy_A           76 LGRTPAEVVS------TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMST-VDADTVTELAQVIVSRG  142 (316)
T ss_dssp             ECSCHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSC-CCHHHHHHHHHHHHHTT
T ss_pred             EcCCHHHHHh------cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHcC
Confidence            7788888875      6899996665 4444444432      2345666654444 45566666766654433

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=98.46  E-value=1.5e-06  Score=74.33  Aligned_cols=93  Identities=14%  Similarity=0.075  Sum_probs=65.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCcc
Q 031341           34 SNIKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARA  108 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~-~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~D  108 (161)
                      .++||+|+||||..|+++++ .|.++|  ..+++.+.++ ..|+...++-|.    ...+.  ++.++ +.      ++|
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~----~~~v~~~~~~~~-~~------~vD   70 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKN----ETTLKDATSIDD-LK------KCD   70 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCS----CCBCEETTCHHH-HH------TCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCC----ceEEEeCCChhH-hc------CCC
Confidence            35899999999999999999 888888  7899888776 577766554321    22332  23444 43      799


Q ss_pred             EEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031341          109 VVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (161)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~g~-~vVigtt  138 (161)
                      +|+.++......+.+..+++.|. .+|+=.+
T Consensus        71 vvf~a~~~~~s~~~~~~~~~~G~k~~VID~s  101 (377)
T 3uw3_A           71 VIITCQGGDYTNDVFPKLRAAGWNGYWIDAA  101 (377)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEECCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence            99944444445788899999997 2454443

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=98.46  E-value=4.9e-07  Score=76.28  Aligned_cols=93  Identities=16%  Similarity=0.162  Sum_probs=63.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~--   91 (161)
                      |+||+|+|+ |++||.+++.+.++  |+++++++.|..             ..|+..+++      +-+. ...++++  
T Consensus         2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~-g~~i~v~~~   79 (339)
T 3b1j_A            2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVN-GKTMKIVCD   79 (339)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEET-TEEEEEECC
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeec-CceEEEEec
Confidence            489999997 99999999999988  999999998641             122211111      0000 0123343  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~  132 (161)
                      .|++++...   +.++|+|+++|......+.+...++.|..
T Consensus        80 ~dp~~l~w~---~~~vDvV~e~tg~~~s~e~a~~~l~~Gak  117 (339)
T 3b1j_A           80 RNPLNLPWK---EWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (339)
T ss_dssp             SCGGGSCTT---TTTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             CChHHCccc---ccCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            456665321   13789999888777778999999999987

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=98.45  E-value=1.3e-06  Score=74.54  Aligned_cols=91  Identities=14%  Similarity=0.006  Sum_probs=64.3

Q ss_pred             eeEEEEcCCCHHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~-~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVV  110 (161)
                      |||+|+||||..|+++++ .|.++|  ..+++.+.++. .|+...++.|.    ...+.  .+.++ +.      ++|+|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~----~~~~~~~~~~~~-~~------~~Dvv   68 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD----AGMLHDAFDIES-LK------QLDAV   68 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC----CCBCEETTCHHH-HT------TCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC----ceEEEecCChhH-hc------cCCEE
Confidence            699999999999999999 888888  78998887765 77766554321    23332  23444 43      79999


Q ss_pred             EEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031341          111 IDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~-~vVigtt  138 (161)
                      +.++......+.+..+++.|. .+|+=.+
T Consensus        69 f~a~~~~~s~~~~~~~~~~G~k~~VID~s   97 (370)
T 3pzr_A           69 ITCQGGSYTEKVYPALRQAGWKGYWIDAA   97 (370)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EECCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence            944444445788889999996 3454443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.44  E-value=2.1e-06  Score=69.36  Aligned_cols=106  Identities=13%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +||+|+| +|.||+.+++.+.+ .++++. ++|++.  .....+.    +.++..++++++++.      ++|+||.+.+
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVK-AGCSVT-IWNRSP--EKAEELA----ALGAERAATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEe-ecHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEEcC
Confidence            6999999 59999999999874 578876 677643  2222222    346777899999886      6899995554


Q ss_pred             -chhHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          116 -ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       116 -p~~~~~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                       |....+.+      ...++.|..+|. +++.+++..+++.+..++.++
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~  114 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVD-MSTVDPATSQRIGVAVVAKGG  114 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEe-CCCCCHHHHHHHHHHHHHhCC
Confidence             33343433      244556665554 455667777777777666544

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.42  E-value=2.3e-06  Score=70.20  Aligned_cols=111  Identities=13%  Similarity=0.109  Sum_probs=71.2

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      +...|+||+|+| +|.||+.+++.+.+ .++++. ++|++.  .....+.    +.++..++++++++.      .+|+|
T Consensus        17 ~~~~m~~I~iIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~~~~~------~aDvv   81 (310)
T 3doj_A           17 RGSHMMEVGFLG-LGIMGKAMSMNLLK-NGFKVT-VWNRTL--SKCDELV----EHGASVCESPAEVIK------KCKYT   81 (310)
T ss_dssp             -CCCSCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEE
T ss_pred             ccccCCEEEEEC-ccHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeEcCCHHHHHH------hCCEE
Confidence            344579999999 59999999999974 578765 577643  2222222    346777889999886      68999


Q ss_pred             EEccCc-hhHHHHH---H---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          111 IDFTDA-STVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       111 IDfT~p-~~~~~~~---~---~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      |-+.+. ....+.+   .   ..+..|..+ +-++..+++..+++.+..++.++
T Consensus        82 i~~vp~~~~~~~v~~~~~~l~~~l~~g~~v-v~~st~~~~~~~~~~~~~~~~g~  134 (310)
T 3doj_A           82 IAMLSDPCAALSVVFDKGGVLEQICEGKGY-IDMSTVDAETSLKINEAITGKGG  134 (310)
T ss_dssp             EECCSSHHHHHHHHHSTTCGGGGCCTTCEE-EECSCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEcCCHHHHHHHHhCchhhhhccCCCCEE-EECCCCCHHHHHHHHHHHHHcCC
Confidence            955532 2333333   1   233445544 44555667777777777666544

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.42  E-value=1.5e-06  Score=71.51  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=68.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .|+||+|+| +|.||+.+++.+.+. +++-|.++|++........+.    +.++..++++++++.      ++|+||-+
T Consensus        23 ~~~~I~iIG-~G~mG~~~A~~L~~~-G~~~V~~~dr~~~~~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi~~   90 (312)
T 3qsg_A           23 NAMKLGFIG-FGEAASAIASGLRQA-GAIDMAAYDAASAESWRPRAE----ELGVSCKASVAEVAG------ECDVIFSL   90 (312)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHHH-SCCEEEEECSSCHHHHHHHHH----HTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHC-CCCeEEEEcCCCCHHHHHHHH----HCCCEEeCCHHHHHh------cCCEEEEe
Confidence            358999999 599999999999854 673345777641001111111    346777889999886      68999977


Q ss_pred             cCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKA  155 (161)
Q Consensus       114 T~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~L~~~A~~~  155 (161)
                      .++....+.+....+   .+. +|+-++...+....++.+..++.
T Consensus        91 vp~~~~~~~~~~l~~~l~~~~-ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           91 VTAQAALEVAQQAGPHLCEGA-LYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             SCTTTHHHHHHHHGGGCCTTC-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHhhHhhcCCCC-EEEEcCCCCHHHHHHHHHHHHhh
Confidence            766666555544333   343 55545556666666666655543

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=98.42  E-value=9.4e-07  Score=70.14  Aligned_cols=92  Identities=21%  Similarity=0.214  Sum_probs=66.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhh-hhcCCCCCCeeee--CCHHHHHhcccccCCccE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGM-VCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~~g~~~~~-~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DV  109 (161)
                      .+.||+|+|| |++|+.+++.+. ...+++++|++|.+..- ..+. .     -.|+|++  +++++.+.+    .++|+
T Consensus        83 ~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~~-kiG~~~-----i~GvpV~~~~dL~~~v~~----~~Id~  151 (212)
T 3keo_A           83 STTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSND-LVGKTT-----EDGIPVYGISTINDHLID----SDIET  151 (212)
T ss_dssp             SCEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTST-TTTCBC-----TTCCBEEEGGGHHHHC-C----CSCCE
T ss_pred             CCCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCchh-ccCcee-----ECCeEEeCHHHHHHHHHH----cCCCE
Confidence            3579999996 999999999743 45799999999954310 1111 1     1356664  677777764    68999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                      +|.+++.....+.+..+.++|++-|.=
T Consensus       152 vIIAvPs~~aq~v~d~lv~~GIk~I~n  178 (212)
T 3keo_A          152 AILTVPSTEAQEVADILVKAGIKGILS  178 (212)
T ss_dssp             EEECSCGGGHHHHHHHHHHHTCCEEEE
T ss_pred             EEEecCchhHHHHHHHHHHcCCCEEEE
Confidence            996665556578889999999998854

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.40  E-value=1.9e-07  Score=79.84  Aligned_cols=118  Identities=9%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC-CcchhhhhcC------C-CCCCeeeeCCHHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV-GEDIGMVCDM------E-QPLEIPVMSDLTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~-g~~~~~~~g~------~-~~~~i~v~~dl~~~l~~~~~~~  105 (161)
                      |+||+|+|+ |++|+.+++.+.+.++. ..+.+++++.. .....+..+.      . ...++.-.++++++++.    .
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~----~   75 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE----V   75 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH----H
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh----h
Confidence            579999997 99999999999988876 45667775421 1111111110      0 00111112345666652    3


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCC--------CHHHHHHHHHHhhhcCee
Q 031341          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI--------QLETVSALSAFCDKASMV  158 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~--------~~e~~~~L~~~A~~~~Vv  158 (161)
                      ++|+||.++.|....+.+..|+++|++++- ++.+        ...+..++.+.|++.++.
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l~~g~~vvD-~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~  135 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACLRTGVPYLD-TANYEHPDLAKFEYKEQWAFHDRYKEKGVM  135 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHHTCCEEE-SSCCBCTTCSCBCSHHHHTTHHHHHHHTCE
T ss_pred             CCCEEEECCCcccChHHHHHHHHhCCCEEE-ecCCCCcccchhhhHHHHHHHHHHHHhCCE
Confidence            589999999888888999999999999885 3322        123335677788877654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.40  E-value=1.4e-06  Score=70.00  Aligned_cols=107  Identities=9%  Similarity=0.066  Sum_probs=67.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|+||+|+| +|.||+.+++.+.+ .++++. ++| +..  ....+.    +.++.++.++++++.      ++|+||.+
T Consensus         2 ~~m~i~iiG-~G~~G~~~a~~l~~-~g~~V~-~~~-~~~--~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   65 (295)
T 1yb4_A            2 NAMKLGFIG-LGIMGSPMAINLAR-AGHQLH-VTT-IGP--VADELL----SLGAVNVETARQVTE------FADIIFIM   65 (295)
T ss_dssp             --CEEEECC-CSTTHHHHHHHHHH-TTCEEE-ECC-SSC--CCHHHH----TTTCBCCSSHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHh-CCCEEE-EEc-CHH--HHHHHH----HcCCcccCCHHHHHh------cCCEEEEE
Confidence            468999999 59999999999875 578875 556 321  222222    235667789999885      69999966


Q ss_pred             cCchhHHHHHHH-------HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          114 TDASTVYDNVKQ-------ATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       114 T~p~~~~~~~~~-------al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +++....+.+..       .+..|..+|.-+++ ++...++|.+..++.++
T Consensus        66 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~g~  115 (295)
T 1yb4_A           66 VPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRVNEMGA  115 (295)
T ss_dssp             CSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHHHTTTE
T ss_pred             CCCHHHHHHHHhCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHcCC
Confidence            644443433332       24456666554444 45556667766655443

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=98.39  E-value=5e-07  Score=76.06  Aligned_cols=96  Identities=24%  Similarity=0.208  Sum_probs=64.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeeeC--C
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVMS--D   93 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~~--d   93 (161)
                      |+||+|+|+ |++|+.++|.+.++|+++++++.|..             ..|+-.++.      +-+. ...+.++.  |
T Consensus         1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~-g~~i~v~~~~d   78 (334)
T 3cmc_O            1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVN-GKEIIVKAERD   78 (334)
T ss_dssp             CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEECCSS
T ss_pred             CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEEC-CEEEEEEecCC
Confidence            689999997 99999999999999999999998841             111110000      0000 11344542  4


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      ++++...   +.++|+|+++|......+.+...++.|.. +|+
T Consensus        79 p~~i~w~---~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVI  118 (334)
T 3cmc_O           79 PENLAWG---EIGVDIVVESTGRFTKREDAAKHLEAGAKKVII  118 (334)
T ss_dssp             GGGCCTG---GGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             hhhcCcc---cCccCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence            5554210   13799999888777778999999999973 444

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.39  E-value=2e-06  Score=69.29  Aligned_cols=105  Identities=14%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+|+| +|.||+.+++.+.+ .++++. ++|++.  .....+.    +.++.+++++++++.      .+|+||.+++
T Consensus         1 m~i~iiG-~G~mG~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIG-LGNMGNPMAKNLMK-HGYPLI-IYDVFP--DACKEFQ----DAGEQVVSSPADVAE------KADRIITMLP   65 (296)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHHH-TTCCEE-EECSST--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEe-ccHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            5899999 59999999999875 467754 677542  2222222    346777889998875      6899996664


Q ss_pred             chhH-HHHHHH------HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          116 ASTV-YDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       116 p~~~-~~~~~~------al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      +... .+.+..      .++.|..+|. +.+.+.++.+++.+...+.+
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~g  112 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKMG  112 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcC
Confidence            4433 333332      2345665555 77888888777766555433

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=98.38  E-value=7.8e-07  Score=74.99  Aligned_cols=100  Identities=23%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM-   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~---~~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~-   91 (161)
                      ++||+|+|+ |++|+.+++.+.+   +|+++++++.+..             ..|+-.++.      +-+. ...++++ 
T Consensus         2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~-g~~i~v~~   79 (339)
T 2x5j_O            2 TVRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVG-DDAIRVLH   79 (339)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEEC-CEEEEEEe
Confidence            489999996 9999999999998   8999999998741             111100000      0000 1134444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCCC
Q 031341           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (161)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVigttg  139 (161)
                       .|++++...   +.++|+|+++|......+.+...++.|.. ||+-.++
T Consensus        80 ~~dp~~l~~~---~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           80 ERSLQSLPWR---ELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             CSSGGGCCHH---HHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             cCChHHCccc---ccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence             355553210   02789999888777778999999999987 4454433

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=98.36  E-value=1.1e-06  Score=75.02  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=78.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-----C--------------CHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-----S--------------DLTM   96 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-----~--------------dl~~   96 (161)
                      .||+|+|+||.+|+..++.+.++++++++++...... ..+.+.+.   +++..++     .              .+.+
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~-~~l~~q~~---~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~e   79 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNL-ELAFKIVK---EFNVKNVAITGDVEFEDSSINVWKGSHSIEE   79 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCH-HHHHHHHH---HHTCCEEEECSSCCCCCSSSEEEESTTHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCH-HHHHHHHH---HcCCCEEEEccHHHHHHHHHHHccCHHHHHH
Confidence            6899999999999999999998888999999653211 11111110   1111111     1              2245


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      ++..    .++|+|+..++-..+.+.+..|+++|+++.+..-+-.....+.+.+++++.++
T Consensus        80 l~~~----~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~  136 (376)
T 3a06_A           80 MLEA----LKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGT  136 (376)
T ss_dssp             HHHH----HCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCC
T ss_pred             HhcC----CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCC
Confidence            5542    57999997877788899999999999999995543334556678888887654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.36  E-value=5.2e-06  Score=70.17  Aligned_cols=112  Identities=12%  Similarity=0.036  Sum_probs=69.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .++||+|+| +|.||+.+++.+.+ .++++. ++|++.  .....+.    +.++..++++++++..   ...+|+||-.
T Consensus        21 ~~mkIgiIG-lG~mG~~~A~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~e~~~~---a~~~DvVi~~   88 (358)
T 4e21_A           21 QSMQIGMIG-LGRMGADMVRRLRK-GGHECV-VYDLNV--NAVQALE----REGIAGARSIEEFCAK---LVKPRVVWLM   88 (358)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCBCCSSHHHHHHH---SCSSCEEEEC
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHH----HCCCEEeCCHHHHHhc---CCCCCEEEEe
Confidence            458999999 69999999999974 567755 667642  2222222    3466778899998762   1245999966


Q ss_pred             cCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          114 TDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       114 T~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .++....+.+...   ++.|.-+|..+| ..+....++.+..++.++-
T Consensus        89 vp~~~v~~vl~~l~~~l~~g~iiId~st-~~~~~~~~~~~~l~~~g~~  135 (358)
T 4e21_A           89 VPAAVVDSMLQRMTPLLAANDIVIDGGN-SHYQDDIRRADQMRAQGIT  135 (358)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEECSS-CCHHHHHHHHHHHHTTTCE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEeCCC-CChHHHHHHHHHHHHCCCE
Confidence            6555333444333   334555555444 4455556666666555543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.36  E-value=3.6e-06  Score=67.89  Aligned_cols=107  Identities=15%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +++||+|+| +|.||+.+++.+.. .++++. ++|++.  .....+.    +.++.+++++++++.      ++|+||.+
T Consensus         3 ~~~~i~iiG-~G~~G~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   67 (301)
T 3cky_A            3 KSIKIGFIG-LGAMGKPMAINLLK-EGVTVY-AFDLME--ANVAAVV----AQGAQACENNQKVAA------ASDIIFTS   67 (301)
T ss_dssp             -CCEEEEEC-CCTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEE
Confidence            358999999 59999999999875 578865 677542  1222222    236677889999885      68999966


Q ss_pred             cCchhHH-HHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          114 TDASTVY-DNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       114 T~p~~~~-~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      ++..... ..+      ...++.|..+|.-+++. ++..+.|.+...+.+
T Consensus        68 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~-~~~~~~l~~~~~~~g  116 (301)
T 3cky_A           68 LPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS-PSSTLKMAKVAAEKG  116 (301)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC-HHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcC
Confidence            6434333 333      23455677776655554 445556666655433

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=98.35  E-value=9.3e-07  Score=75.73  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh--c--CC-CCCCeeee--C
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC--D--ME-QPLEIPVM--S   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~-------------~~~g~~~~~~~--g--~~-~~~~i~v~--~   92 (161)
                      |+||+|+|+ |++||.+++.+.++  ++++|+++-|.             +..|+-.+++.  +  +. ....+.++  .
T Consensus         2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (380)
T 2d2i_A            2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR   80 (380)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred             CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence            489999996 99999999999988  99999999874             11222111110  0  00 00123343  4


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~  132 (161)
                      |++++...   +.++|+|+++|......+.+...++.|..
T Consensus        81 dp~~l~w~---~~gvDvV~e~TG~f~s~e~a~~hl~aGak  117 (380)
T 2d2i_A           81 NPLNLPWK---EWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (380)
T ss_dssp             CGGGCCHH---HHTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             ChHHCCcc---cCCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            55554210   12789999888777778999999999977

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=98.34  E-value=1.4e-06  Score=76.63  Aligned_cols=99  Identities=13%  Similarity=0.116  Sum_probs=69.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV  109 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e---Lvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DV  109 (161)
                      -+.||.|+|+ |.||+.+++.+.++++++   ++ ++|+...+.++.+..|.. ...+.+. ++++++++.+-  .+.|+
T Consensus        12 ~~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~~~~~~~g~~-~~~~~Vdadnv~~~l~aLl--~~~Dv   86 (480)
T 2ph5_A           12 FKNRFVILGF-GCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKVDVAQQYGVS-FKLQQITPQNYLEVIGSTL--EENDF   86 (480)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSCCHHHHHTCE-EEECCCCTTTHHHHTGGGC--CTTCE
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHhCCCCceeEEE-EeccchhhhhHHhhcCCc-eeEEeccchhHHHHHHHHh--cCCCE
Confidence            3579999995 999999999999999884   44 446554555655555432 2223342 44544433211  13499


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ||+.+.|....+.+++|+++|++.+--+
T Consensus        87 VIN~s~~~~~l~Im~acleaGv~YlDTa  114 (480)
T 2ph5_A           87 LIDVSIGISSLALIILCNQKGALYINAA  114 (480)
T ss_dssp             EEECCSSSCHHHHHHHHHHHTCEEEESS
T ss_pred             EEECCccccCHHHHHHHHHcCCCEEECC
Confidence            9999999999999999999999987633

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=98.29  E-value=1.3e-06  Score=63.49  Aligned_cols=100  Identities=14%  Similarity=0.207  Sum_probs=77.3

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |=+|+|+|++   ++.|..+.+.+.+. ++++.. +.+..     .++      .|.+.|.+++++-      . +|+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~-g~~V~p-VnP~~-----~~i------~G~~~y~sl~dlp------~-vDlav   63 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSH-GHEFIP-VGRKK-----GEV------LGKTIINERPVIE------G-VDTVT   63 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHH-TCCEEE-ESSSC-----SEE------TTEECBCSCCCCT------T-CCEEE
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHC-CCeEEE-ECCCC-----CcC------CCeeccCChHHCC------C-CCEEE
Confidence            4569999997   67999999999854 677664 33321     122      3678888988864      4 99988


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .|++|+...+.++.|.+.|++.|+-++|+..   +++.++|++.++
T Consensus        64 i~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~---~e~~~~a~~~Gi  106 (122)
T 3ff4_A           64 LYINPQNQLSEYNYILSLKPKRVIFNPGTEN---EELEEILSENGI  106 (122)
T ss_dssp             ECSCHHHHGGGHHHHHHHCCSEEEECTTCCC---HHHHHHHHHTTC
T ss_pred             EEeCHHHHHHHHHHHHhcCCCEEEECCCCCh---HHHHHHHHHcCC
Confidence            8999999999999999999998888888854   467888888764

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=98.28  E-value=6.6e-06  Score=67.86  Aligned_cols=108  Identities=12%  Similarity=0.084  Sum_probs=72.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |-||+++| .|.||+.+++.|. ..++++. ++|++.  .....+.    +.|....+++.++.+      ..|+|| ..
T Consensus         3 M~kIgfIG-lG~MG~~mA~~L~-~~G~~v~-v~dr~~--~~~~~l~----~~Ga~~a~s~~e~~~------~~dvv~-~~   66 (300)
T 3obb_A            3 MKQIAFIG-LGHMGAPMATNLL-KAGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVI-SM   66 (300)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHH-HTTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------TCSEEE-EC
T ss_pred             cCEEEEee-ehHHHHHHHHHHH-hCCCeEE-EEcCCH--HHHHHHH----HcCCEEcCCHHHHHh------cCCcee-ec
Confidence            56999999 7999999999998 5688865 778653  2223332    346778899999885      789888 44


Q ss_pred             Cchh--HHHHHH------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          115 DAST--VYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 ~p~~--~~~~~~------~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .|+.  +.+.+.      ..++.|. +|+-.+..++++.+++.+.+++.++-|
T Consensus        67 l~~~~~v~~V~~~~~g~~~~~~~g~-iiId~sT~~p~~~~~~a~~~~~~G~~~  118 (300)
T 3obb_A           67 LPASQHVEGLYLDDDGLLAHIAPGT-LVLECSTIAPTSARKIHAAARERGLAM  118 (300)
T ss_dssp             CSCHHHHHHHHHSSSSSTTSCCC-C-EEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             CCchHHHHHHHhchhhhhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            4433  333332      1223344 444444478899999999988876654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.26  E-value=6.2e-06  Score=66.47  Aligned_cols=105  Identities=15%  Similarity=0.090  Sum_probs=67.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +||+|+| +|.||+.+++.+.. .++++ .++|++.  .....+.    +.++..+.++++++.      ++|+||.+++
T Consensus         6 m~i~iiG-~G~~G~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIG-LGIMGKPMSKNLLK-AGYSL-VVSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITMLP   70 (299)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEE-EEECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             ceEEEEC-chHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEECC
Confidence            7999999 59999999999875 47885 5677542  1122221    236677889998875      6899996665


Q ss_pred             chhHHH-HH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          116 ASTVYD-NV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       116 p~~~~~-~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      .....+ .+      ...+..|..+|.-.++. +...+.|.+...+.+
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~g  117 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIA-PLASREISDALKAKG  117 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC-HHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcC
Confidence            343333 33      23455677666544444 444566766665543

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.24  E-value=7.9e-06  Score=64.78  Aligned_cols=104  Identities=18%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+|+| .|.||+.+++.+.+ .++++.. +++.........+.    +.|+.  +++++++.      ++|+||.+.+
T Consensus         1 M~I~iIG-~G~mG~~la~~l~~-~g~~V~~-~~~~~~~~~~~~~~----~~g~~--~~~~~~~~------~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIG-FGEVAQTLASRLRS-RGVEVVT-SLEGRSPSTIERAR----TVGVT--ETSEEDVY------SCPVVISAVT   65 (264)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHH-TTCEEEE-CCTTCCHHHHHHHH----HHTCE--ECCHHHHH------TSSEEEECSC
T ss_pred             CeEEEEe-chHHHHHHHHHHHH-CCCeEEE-eCCccCHHHHHHHH----HCCCc--CCHHHHHh------cCCEEEEECC
Confidence            5899999 59999999999974 5788765 55421111112221    12443  67777775      7999997776


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031341          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~  154 (161)
                      |....+.+....+.-.++|+-+++.+.+..+.|.+...+
T Consensus        66 ~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHHHhh
Confidence            666666665544443336776667777777778777665

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=98.24  E-value=1.9e-06  Score=72.52  Aligned_cols=91  Identities=22%  Similarity=0.166  Sum_probs=61.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeeeC--
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVMS--   92 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~~--   92 (161)
                      +||+|+|+ |++|++++|.+.++  |++||+++.|..             ..|+-.+++      +-+. ...+.++.  
T Consensus         1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~-g~~i~v~~~~   78 (332)
T 1hdg_O            1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVD-GKEIKVFAEP   78 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEET-TEEEEEECCS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEEC-CeEEEEEecC
Confidence            58999997 99999999999999  999999998841             112211110      0000 11344542  


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM  131 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~  131 (161)
                      |++++...   +.++|+|+++|......+.+...++.|.
T Consensus        79 dp~~l~w~---~~~vDvV~~atg~~~s~e~a~~~l~aGa  114 (332)
T 1hdg_O           79 DPSKLPWK---DLGVDFVIESTGVFRNREKAELHLQAGA  114 (332)
T ss_dssp             SGGGSCHH---HHTCCEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             ChHHCccc---ccCCCEEEECCccchhHHHHHHHHHcCC
Confidence            55554210   1278999988876777889999999997

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.23  E-value=8.5e-06  Score=66.90  Aligned_cols=108  Identities=12%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -||+++| .|.||+.+++.+. ..++++. ++|++..  ...++    .+.|..+.+++.++.+      ..|+||-.-+
T Consensus         6 ~kIgfIG-LG~MG~~mA~~L~-~~G~~V~-v~dr~~~--~~~~l----~~~G~~~~~s~~e~~~------~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLG-LGNLGTPIAEILL-EAGYELV-VWNRTAS--KAEPL----TKLGATVVENAIDAIT------PGGIVFSVLA   70 (297)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEE-EC---------CTT----TTTTCEECSSGGGGCC------TTCEEEECCS
T ss_pred             CcEEEEe-cHHHHHHHHHHHH-HCCCeEE-EEeCCHH--HHHHH----HHcCCeEeCCHHHHHh------cCCceeeecc
Confidence            3899999 7999999999998 5689876 6776431  12222    2457788899999875      7898884433


Q ss_pred             chhH-HH----HHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          116 ASTV-YD----NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       116 p~~~-~~----~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++.. .+    .+...+..|.-+|-.+ ..++++.+++.+.+++.++-|
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~s-T~~p~~~~~~~~~~~~~g~~~  118 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMS-TISPETSRQLAQVHEWYGAHY  118 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEE
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECC-CCChHHHHHHHHHHHhcCCce
Confidence            3222 22    2334455555444444 477888899988888876554

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.23  E-value=1.1e-05  Score=65.51  Aligned_cols=98  Identities=7%  Similarity=0.076  Sum_probs=65.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~---eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ++||+|+|+ |+||+.+++.+.+. ++   + +.++|++.  .....+.   ..+++.+++|..+++.      ++|+||
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~-g~~~~~-V~v~dr~~--~~~~~l~---~~~gi~~~~~~~~~~~------~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIAN-GYDPNR-ICVTNRSL--DKLDFFK---EKCGVHTTQDNRQGAL------NADVVV   68 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHT-TCCGGG-EEEECSSS--HHHHHHH---HTTCCEEESCHHHHHS------SCSEEE
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHC-CCCCCe-EEEEeCCH--HHHHHHH---HHcCCEEeCChHHHHh------cCCeEE
Confidence            479999995 99999999998854 44   4 45777643  2222332   1357778889988885      799999


Q ss_pred             EccCchhHHHHHHHH----HHcCCcEEEeCCCCCHHHHH
Q 031341          112 DFTDASTVYDNVKQA----TAFGMRSVVYVPHIQLETVS  146 (161)
Q Consensus       112 DfT~p~~~~~~~~~a----l~~g~~vVigttg~~~e~~~  146 (161)
                      .+..|....+.+...    ++.+..+|+-+.|++.+.++
T Consensus        69 lav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~  107 (280)
T 3tri_A           69 LAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIE  107 (280)
T ss_dssp             ECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHH
T ss_pred             EEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHH
Confidence            888777665555433    33333445445688766543

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.22  E-value=4.1e-06  Score=72.95  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=80.8

Q ss_pred             CeeEEEEcCCC---HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVK---EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G---~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +-+|+|+|+++   ++|+.+++.+.+.. -..+..+++.  +.   +      -.|+++|.+++++.+      .+|+++
T Consensus         8 p~siAVvGas~~~~~~g~~v~~~l~~~g-~~~v~pVnP~--~~---~------i~G~~~y~sl~~lp~------~~Dlav   69 (457)
T 2csu_A            8 PKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIK--EE---E------VQGVKAYKSVKDIPD------EIDLAI   69 (457)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSS--CS---E------ETTEECBSSTTSCSS------CCSEEE
T ss_pred             CCeEEEECcCCCCCchHHHHHHHHHHcC-CCEEEEECCC--CC---e------ECCEeccCCHHHcCC------CCCEEE
Confidence            46899999974   78999999997665 3445556543  11   1      247899999999864      799998


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEE-eCCCCCH--H----HHHHHHHHhhhcCeeec
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVV-YVPHIQL--E----TVSALSAFCDKASMVST  160 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVi-gttg~~~--e----~~~~L~~~A~~~~Vv~t  160 (161)
                      .|++|+.+.+.++.|.+.|++.++ -+.|+.+  +    ..++|.++|++.++-.-
T Consensus        70 i~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi  125 (457)
T 2csu_A           70 IVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII  125 (457)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEE
Confidence            899999999999999999998654 4557742  2    25688888988765443

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=98.21  E-value=2.2e-05  Score=66.73  Aligned_cols=126  Identities=15%  Similarity=0.144  Sum_probs=81.8

Q ss_pred             CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcC----------------------CcEEEEEEec--CCCCcchhhhhcCCC
Q 031341           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKAR----------------------GMEVAGAIDS--HSVGEDIGMVCDMEQ   84 (161)
Q Consensus        29 ~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~----------------------~~eLvavvd~--~~~g~~~~~~~g~~~   84 (161)
                      .|..+.++||+|+|. |+.|+.++..+...+                      +++++++.|.  .+.|+++.+.. ...
T Consensus         9 ~~~~~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~-~~~   86 (367)
T 1gr0_A            9 APEASTEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAI-FAS   86 (367)
T ss_dssp             -----CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHT-TST
T ss_pred             CchhccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCE-ecC
Confidence            466677899999997 999999999555444                      7899999994  23454433211 000


Q ss_pred             CC------Cee----------------------------eeCCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHH
Q 031341           85 PL------EIP----------------------------VMSDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQAT  127 (161)
Q Consensus        85 ~~------~i~----------------------------v~~dl~~~l~~~~~~~~~DVVIDfT~p---~~~~~~~~~al  127 (161)
                      +.      +++                            +..|+.+.+.+    .+.||+|.+-+.   ....-++.+|+
T Consensus        87 ~n~~~~~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~----~~~dVvV~~lp~gs~~aS~~YA~Aal  162 (367)
T 1gr0_A           87 ENNTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKE----AKVDVLVSYLPVGSEEADKFYAQCAI  162 (367)
T ss_dssp             TCCCCCCSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHH----TTCSEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCchhhhhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHH----hCCcEEEEeeeCCCcCHHHHHHHHHH
Confidence            00      111                            22356666654    789999876422   23345778999


Q ss_pred             HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          128 AFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       128 ~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +.|++.|-++|-+... ...+.++++++++...|
T Consensus       163 ~ag~~fvN~~P~~~~~-~P~~~el~~~~g~pi~G  195 (367)
T 1gr0_A          163 DAGVAFVNALPVFIAS-DPVWAKKFTDARVPIVG  195 (367)
T ss_dssp             HHTCEEEECSSCCSTT-SHHHHHHHHHHTCEEEE
T ss_pred             HcCCceEecCCccccC-CHHHHHHHHHcCCCEec
Confidence            9999999999866532 35688999998887665

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.19  E-value=8.7e-06  Score=65.69  Aligned_cols=107  Identities=14%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+||+|+| +|.||+.+++.+.+. ++++. ++|++..  ....+.    +.++..++++++++.      ++|+||.+.
T Consensus         1 M~~I~iiG-~G~mG~~~a~~l~~~-G~~V~-~~dr~~~--~~~~~~----~~g~~~~~~~~~~~~------~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLG-LGIMGGPMAANLVRA-GFDVT-VWNRNPA--KCAPLV----ALGARQASSPAEVCA------ACDITIAML   65 (287)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHHHH-TCCEE-EECSSGG--GGHHHH----HHTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEc-cCHHHHHHHHHHHHC-CCeEE-EEcCCHH--HHHHHH----HCCCeecCCHHHHHH------cCCEEEEEc
Confidence            57999999 699999999998854 67755 5676431  222222    236677889999886      689999655


Q ss_pred             Cch-hHHHHH---H---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          115 DAS-TVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       115 ~p~-~~~~~~---~---~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      ++. ...+.+   .   ..+..|..+ +-++..++...+++.+..++.++
T Consensus        66 ~~~~~~~~v~~~~~~l~~~l~~g~~v-v~~st~~~~~~~~~~~~~~~~g~  114 (287)
T 3pdu_A           66 ADPAAAREVCFGANGVLEGIGGGRGY-IDMSTVDDETSTAIGAAVTARGG  114 (287)
T ss_dssp             SSHHHHHHHHHSTTCGGGTCCTTCEE-EECSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHcCchhhhhcccCCCEE-EECCCCCHHHHHHHHHHHHHcCC
Confidence            544 333333   1   223445544 44544667777777777666544

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.16  E-value=5.2e-06  Score=63.69  Aligned_cols=96  Identities=10%  Similarity=0.043  Sum_probs=58.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcC-CCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~-~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |||+|+|++|.||+.+++.+.+ .+.++.. ++++.. .....+..+. ....++. .+++++++.      ++|+||.+
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~-~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~D~Vi~~   71 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLAT-LGHEIVV-GSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAE------ACDIAVLT   71 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEE-EESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHH------HCSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHh------cCCEEEEe
Confidence            5899999679999999999874 5788664 564321 0111111110 0001233 467878775      68999988


Q ss_pred             cCchhHHHHHH---HHHHcCCcEEEeCCCCC
Q 031341          114 TDASTVYDNVK---QATAFGMRSVVYVPHIQ  141 (161)
Q Consensus       114 T~p~~~~~~~~---~al~~g~~vVigttg~~  141 (161)
                      +.|....+.+.   ..+ .+..+|.-++|++
T Consensus        72 ~~~~~~~~~~~~l~~~~-~~~~vi~~~~g~~  101 (212)
T 1jay_A           72 IPWEHAIDTARDLKNIL-REKIVVSPLVPVS  101 (212)
T ss_dssp             SCHHHHHHHHHHTHHHH-TTSEEEECCCCEE
T ss_pred             CChhhHHHHHHHHHHHc-CCCEEEEcCCCcC
Confidence            77666554443   233 4777776667765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.13  E-value=2.2e-05  Score=64.27  Aligned_cols=109  Identities=12%  Similarity=0.072  Sum_probs=68.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ..++||+|+| +|.||+.+++.+. ..++++. ++|++.  .....+.    +.++..++++++++.      .+|+||.
T Consensus         7 ~~~~~IgiIG-~G~mG~~~A~~l~-~~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi~   71 (306)
T 3l6d_A            7 SFEFDVSVIG-LGAMGTIMAQVLL-KQGKRVA-IWNRSP--GKAAALV----AAGAHLCESVKAALS------ASPATIF   71 (306)
T ss_dssp             CCSCSEEEEC-CSHHHHHHHHHHH-HTTCCEE-EECSSH--HHHHHHH----HHTCEECSSHHHHHH------HSSEEEE
T ss_pred             cCCCeEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEE
Confidence            4468999999 6999999999987 4577765 567542  1222222    235667789999886      6899996


Q ss_pred             ccCchh-HHHHHH----HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          113 FTDAST-VYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       113 fT~p~~-~~~~~~----~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +.++.. ..+.+.    ..+..|.-+|. ++..+++..+++.+..++.++
T Consensus        72 ~vp~~~~~~~v~~~~~l~~~~~g~ivid-~st~~~~~~~~l~~~~~~~g~  120 (306)
T 3l6d_A           72 VLLDNHATHEVLGMPGVARALAHRTIVD-YTTNAQDEGLALQGLVNQAGG  120 (306)
T ss_dssp             CCSSHHHHHHHHTSTTHHHHTTTCEEEE-CCCCCTTHHHHHHHHHHHTTC
T ss_pred             EeCCHHHHHHHhcccchhhccCCCEEEE-CCCCCHHHHHHHHHHHHHcCC
Confidence            554343 333221    23445555544 444556666777766665543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.13  E-value=1.5e-05  Score=63.68  Aligned_cols=104  Identities=10%  Similarity=-0.084  Sum_probs=61.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+||+|+| .|.||+.+++.+..  ++++ .++|++.  .....+.    +.++..++ +++++.      ++|+||.++
T Consensus         1 M~~i~iiG-~G~~G~~~a~~l~~--g~~V-~~~~~~~--~~~~~~~----~~g~~~~~-~~~~~~------~~D~vi~~v   63 (289)
T 2cvz_A            1 MEKVAFIG-LGAMGYPMAGHLAR--RFPT-LVWNRTF--EKALRHQ----EEFGSEAV-PLERVA------EARVIFTCL   63 (289)
T ss_dssp             -CCEEEEC-CSTTHHHHHHHHHT--TSCE-EEECSST--HHHHHHH----HHHCCEEC-CGGGGG------GCSEEEECC
T ss_pred             CCeEEEEc-ccHHHHHHHHHHhC--CCeE-EEEeCCH--HHHHHHH----HCCCcccC-HHHHHh------CCCEEEEeC
Confidence            57999999 59999999999985  8885 4677542  1222221    12344444 666654      689999666


Q ss_pred             CchhHH-HHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          115 DASTVY-DNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       115 ~p~~~~-~~~~~---al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      .+.... +.+..   .++.|..+|..++ .+....+.|.+..++.+
T Consensus        64 ~~~~~~~~v~~~l~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~g  108 (289)
T 2cvz_A           64 PTTREVYEVAEALYPYLREGTYWVDATS-GEPEASRRLAERLREKG  108 (289)
T ss_dssp             SSHHHHHHHHHHHTTTCCTTEEEEECSC-CCHHHHHHHHHHHHTTT
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEECCC-CCHHHHHHHHHHHHHcC
Confidence            545433 33322   2334555554333 44555666777666544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.11  E-value=4.7e-05  Score=61.91  Aligned_cols=106  Identities=12%  Similarity=0.053  Sum_probs=67.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++||+|+| +|.||+.+++.+. ..++++. ++|++..  ....+.    +.++..++|++++.      . +|+||.+.
T Consensus        15 ~~~I~vIG-~G~mG~~~A~~l~-~~G~~V~-~~dr~~~--~~~~~~----~~g~~~~~~~~~~~------~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIG-LGNMGAPMATRMT-EWPGGVT-VYDIRIE--AMTPLA----EAGATLADSVADVA------A-ADLIHITV   78 (296)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHT-TSTTCEE-EECSSTT--TSHHHH----HTTCEECSSHHHHT------T-SSEEEECC
T ss_pred             CCeEEEEC-cCHHHHHHHHHHH-HCCCeEE-EEeCCHH--HHHHHH----HCCCEEcCCHHHHH------h-CCEEEEEC
Confidence            36999999 6999999999987 4578765 5676432  122222    34677788999986      4 89999555


Q ss_pred             Cch-hHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          115 DAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       115 ~p~-~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +.. ...+.+...   ++.|..+|. ++..++...+++.+..++.++
T Consensus        79 p~~~~~~~v~~~l~~~l~~g~ivv~-~st~~~~~~~~~~~~~~~~g~  124 (296)
T 3qha_A           79 LDDAQVREVVGELAGHAKPGTVIAI-HSTISDTTAVELARDLKARDI  124 (296)
T ss_dssp             SSHHHHHHHHHHHHTTCCTTCEEEE-CSCCCHHHHHHHHHHHGGGTC
T ss_pred             CChHHHHHHHHHHHHhcCCCCEEEE-eCCCCHHHHHHHHHHHHHcCC
Confidence            423 333444333   334444444 444566777777777666554

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.11  E-value=4.5e-06  Score=66.08  Aligned_cols=98  Identities=9%  Similarity=0.095  Sum_probs=63.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~----eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      ++||+|+| +|+||+.+++.+.+. ++    ++ .++|++.  .....+.   ...++.+++|.++++.      ++|+|
T Consensus         2 ~~~i~iIG-~G~mG~~~a~~l~~~-g~~~~~~V-~~~~r~~--~~~~~~~---~~~g~~~~~~~~e~~~------~aDvV   67 (247)
T 3gt0_A            2 DKQIGFIG-CGNMGMAMIGGMINK-NIVSSNQI-ICSDLNT--ANLKNAS---EKYGLTTTTDNNEVAK------NADIL   67 (247)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHT-TSSCGGGE-EEECSCH--HHHHHHH---HHHCCEECSCHHHHHH------HCSEE
T ss_pred             CCeEEEEC-ccHHHHHHHHHHHhC-CCCCCCeE-EEEeCCH--HHHHHHH---HHhCCEEeCChHHHHH------hCCEE
Confidence            47999999 599999999999754 54    54 4677642  1222221   1246677889999885      68999


Q ss_pred             EEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHH
Q 031341          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVS  146 (161)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~  146 (161)
                      |.++.|....+.+...   ++.+..+|+-+.|.+.+.++
T Consensus        68 ilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~  106 (247)
T 3gt0_A           68 ILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTE  106 (247)
T ss_dssp             EECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHH
Confidence            9777776665555433   23455555555678766544

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.09  E-value=2.7e-05  Score=68.04  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee---e-eC---CHHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---V-MS---DLTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~---v-~~---dl~~~l~~~~~~~~~  107 (161)
                      +.||+|+|+ |.+|+.+++.+.+.++.++ .+++++.  .+..++..   ..++.   + ..   ++++++.      ++
T Consensus        23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V-~v~~R~~--~ka~~la~---~~~~~~~~~D~~d~~~l~~~l~------~~   89 (467)
T 2axq_A           23 GKNVLLLGS-GFVAQPVIDTLAANDDINV-TVACRTL--ANAQALAK---PSGSKAISLDVTDDSALDKVLA------DN   89 (467)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSTTEEE-EEEESSH--HHHHHHHG---GGTCEEEECCTTCHHHHHHHHH------TS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHhCCCCeE-EEEECCH--HHHHHHHH---hcCCcEEEEecCCHHHHHHHHc------CC
Confidence            468999996 9999999999998878884 5666542  12222221   11221   1 12   3445554      79


Q ss_pred             cEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      |+||.++.+....+.+..+++.|++++. ...++++ ...|.+.|++.++.
T Consensus        90 DvVIn~tp~~~~~~v~~a~l~~g~~vvd-~~~~~p~-~~~Ll~~Ak~aGv~  138 (467)
T 2axq_A           90 DVVISLIPYTFHPNVVKSAIRTKTDVVT-SSYISPA-LRELEPEIVKAGIT  138 (467)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHTCEEEE-CSCCCHH-HHHHHHHHHHHTCE
T ss_pred             CEEEECCchhhhHHHHHHHHhcCCEEEE-eecCCHH-HHHHHHHHHHcCCE
Confidence            9999888766566678889999999875 3323443 45677777776653

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=98.06  E-value=1.5e-05  Score=67.24  Aligned_cols=96  Identities=21%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcch------hhhhcCCCCCCeeee-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGEDI------GMVCDMEQPLEIPVM-   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~---~~~eLvavvd~~-------------~~g~~~------~~~~g~~~~~~i~v~-   91 (161)
                      |+||+|.|+ |++||.+++.+.++   ++++++++-|..             ..|+--      +..+-+. ...+.++ 
T Consensus         1 ~ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~-g~~i~v~~   78 (335)
T 1obf_O            1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVN-GDKIRVDA   78 (335)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CcEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEEC-CEEEEEEE
Confidence            489999995 99999999999888   899999999831             011100      0000010 1134444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                       .|++++-..   +.++|+|++.|......+.+..+++.|.. ||+
T Consensus        79 ~~dp~~~~w~---~~gvDiV~estG~f~s~e~a~~h~~aGakkVvi  121 (335)
T 1obf_O           79 NRNPAQLPWG---ALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII  121 (335)
T ss_dssp             CSCGGGSCTT---TTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE
T ss_pred             cCCcccCCcc---ccCCCEEEEccCccccHHHHHHHHHcCCCEEEE
Confidence             255554221   24799999888767778888888898865 444

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=98.06  E-value=4e-05  Score=55.19  Aligned_cols=89  Identities=13%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVI  111 (161)
                      ++-|++|+|+ |..|+.+++.+.+.++++++|++|....  ..+..     -.|+|++.  ++.+.+.+    ..+|.++
T Consensus         3 ~~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~~~--~~g~~-----i~g~pV~g~~~l~~~~~~----~~id~vi   70 (141)
T 3nkl_A            3 AKKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDDRK--KHKTT-----MQGITIYRPKYLERLIKK----HCISTVL   70 (141)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSCGG--GTTCE-----ETTEEEECGGGHHHHHHH----HTCCEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECCcc--cCCCE-----ecCeEEECHHHHHHHHHH----CCCCEEE
Confidence            3468999995 9999999999998889999999995421  11110     24677764  55555543    5788777


Q ss_pred             EccCch----hHHHHHHHHHHcCCcEEE
Q 031341          112 DFTDAS----TVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       112 DfT~p~----~~~~~~~~al~~g~~vVi  135 (161)
                       ++.|.    ...+.+..+.++|+.+.+
T Consensus        71 -ia~~~~~~~~~~~i~~~l~~~gv~v~~   97 (141)
T 3nkl_A           71 -LAVPSASQVQKKVIIESLAKLHVEVLT   97 (141)
T ss_dssp             -ECCTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred             -EeCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence             44442    224677889999999765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.05  E-value=1.6e-05  Score=64.73  Aligned_cols=108  Identities=12%  Similarity=0.095  Sum_probs=67.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .++||+|+| +|.||+.+++.+. ..++++. ++|++.  .....+.    +.|... ++++++++.      .+|+||.
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~-~~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~e~~~------~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCL-RAGLSTW-GADLNP--QACANLL----AEGACGAAASAREFAG------VVDALVI   70 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHH----HTTCSEEESSSTTTTT------TCSEEEE
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHH-HCCCeEE-EEECCH--HHHHHHH----HcCCccccCCHHHHHh------cCCEEEE
Confidence            357999999 5999999999987 4578765 567542  1222222    234444 788888874      7899995


Q ss_pred             ccCchhHHHHHH-------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          113 FTDASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       113 fT~p~~~~~~~~-------~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +.++....+.+.       ..++.|..+|. ++..++...+++.+..++.++
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~-~st~~~~~~~~~~~~~~~~g~  121 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVMV-SSTISSADAQEIAAALTALNL  121 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEEEE-CSCCCHHHHHHHHHHHHTTTC
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCC
Confidence            554433333332       23445555544 444566777777766665543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.04  E-value=3.1e-05  Score=63.79  Aligned_cols=99  Identities=10%  Similarity=0.056  Sum_probs=63.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC----cEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG----MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~----~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      ++||+|+| .|.||..++..+.+. +    .++. +++++........+.    +.|+.+.++..+++.      .+|+|
T Consensus        22 ~mkI~iIG-~G~mG~ala~~L~~~-G~~~~~~V~-v~~r~~~~~~~~~l~----~~G~~~~~~~~e~~~------~aDvV   88 (322)
T 2izz_A           22 SMSVGFIG-AGQLAFALAKGFTAA-GVLAAHKIM-ASSPDMDLATVSALR----KMGVKLTPHNKETVQ------HSDVL   88 (322)
T ss_dssp             CCCEEEES-CSHHHHHHHHHHHHT-TSSCGGGEE-EECSCTTSHHHHHHH----HHTCEEESCHHHHHH------HCSEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCCCcceEE-EECCCccHHHHHHHH----HcCCEEeCChHHHhc------cCCEE
Confidence            47999999 599999999998754 4    5654 667543211222221    346677788888775      68999


Q ss_pred             EEccCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHH
Q 031341          111 IDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVS  146 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~  146 (161)
                      |.+..|....+.+.....   .+..+|.-++|.+.+.++
T Consensus        89 ilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~  127 (322)
T 2izz_A           89 FLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIE  127 (322)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHH
Confidence            977777666665554332   345555545678765543

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=98.04  E-value=5.5e-06  Score=69.37  Aligned_cols=89  Identities=18%  Similarity=0.117  Sum_probs=60.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~--~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVID  112 (161)
                      |||+|+||+|++|+.+++.+.  .+|..+++.+.+....|..+. +.    ...+.+.+ +.++ +       ++|+|++
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~----g~~i~v~~~~~~~-~-------~~DvV~~   67 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FR----GEEIPVEPLPEGP-L-------PVDLVLA   67 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ET----TEEEEEEECCSSC-C-------CCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-Ec----CceEEEEeCChhh-c-------CCCEEEE
Confidence            589999999999999999998  678888876555433443322 11    11333332 2111 1       5899996


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          113 FTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ++......+.+..+++.|..+|.-+
T Consensus        68 a~g~~~s~~~a~~~~~~G~~vId~s   92 (331)
T 2yv3_A           68 SAGGGISRAKALVWAEGGALVVDNS   92 (331)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEEECS
T ss_pred             CCCccchHHHHHHHHHCCCEEEECC
Confidence            6655666789999999999877543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.03  E-value=6.8e-05  Score=61.95  Aligned_cols=101  Identities=16%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHH-HHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTM-VLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~-~l~~~~~~~~~DVV  110 (161)
                      +||+|+| .|.||+.+++.+.+ .++  ++. ++|++..  ......    +.|+  ..++++++ ++.      ++|+|
T Consensus        34 ~kI~IIG-~G~mG~slA~~l~~-~G~~~~V~-~~dr~~~--~~~~a~----~~G~~~~~~~~~~~~~~~------~aDvV   98 (314)
T 3ggo_A           34 QNVLIVG-VGFMGGSFAKSLRR-SGFKGKIY-GYDINPE--SISKAV----DLGIIDEGTTSIAKVEDF------SPDFV   98 (314)
T ss_dssp             SEEEEES-CSHHHHHHHHHHHH-TTCCSEEE-EECSCHH--HHHHHH----HTTSCSEEESCTTGGGGG------CCSEE
T ss_pred             CEEEEEe-eCHHHHHHHHHHHh-CCCCCEEE-EEECCHH--HHHHHH----HCCCcchhcCCHHHHhhc------cCCEE
Confidence            7999999 69999999999874 466  654 5675421  111111    2233  45678887 664      79999


Q ss_pred             EEccCchhHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHHHHHh
Q 031341          111 IDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFC  152 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al---~~g~~vVigttg~~~e~~~~L~~~A  152 (161)
                      |.+++|....+.+....   +.+. +|+-.++......+.+.+..
T Consensus        99 ilavp~~~~~~vl~~l~~~l~~~~-iv~d~~Svk~~~~~~~~~~l  142 (314)
T 3ggo_A           99 MLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENIL  142 (314)
T ss_dssp             EECSCGGGHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHhhccCCCc-EEEECCCCcHHHHHHHHHhc
Confidence            97777776655554433   3343 45444444444455555544

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.02  E-value=2.3e-05  Score=61.96  Aligned_cols=93  Identities=10%  Similarity=0.063  Sum_probs=62.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~---~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ++||+|+| .|.||+.+++.+.+...   .++ .++|++.. .           .++.++++.++++.      ++|+||
T Consensus         4 ~m~i~iiG-~G~mG~~~a~~l~~~g~~~~~~v-~~~~~~~~-~-----------~g~~~~~~~~~~~~------~~D~vi   63 (262)
T 2rcy_A            4 NIKLGFMG-LGQMGSALAHGIANANIIKKENL-FYYGPSKK-N-----------TTLNYMSSNEELAR------HCDIIV   63 (262)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHHHTSSCGGGE-EEECSSCC-S-----------SSSEECSCHHHHHH------HCSEEE
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHCCCCCCCeE-EEEeCCcc-c-----------CceEEeCCHHHHHh------cCCEEE
Confidence            47999999 59999999999875431   454 46776431 1           24556778888775      689999


Q ss_pred             EccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHH
Q 031341          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSA  147 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~  147 (161)
                      .++.|....+.+.....  .+..+|+-+.|++.+.+++
T Consensus        64 ~~v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~  101 (262)
T 2rcy_A           64 CAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE  101 (262)
T ss_dssp             ECSCTTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH
Confidence            77777666555544322  2455666666888765443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.02  E-value=6.8e-05  Score=65.06  Aligned_cols=112  Identities=17%  Similarity=0.162  Sum_probs=67.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-------Cc------chhhhhcCCCCCCeeeeCCHHHHHhcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-------GE------DIGMVCDMEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-------g~------~~~~~~g~~~~~~i~v~~dl~~~l~~~  101 (161)
                      ++||+|+| +|.||..++..+.+  +++++ ++|++..       |.      .+.+++.. ...++.+++|+++++.  
T Consensus        36 ~mkIaVIG-lG~mG~~lA~~La~--G~~V~-~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~~~~l~~ttd~~ea~~--  108 (432)
T 3pid_A           36 FMKITISG-TGYVGLSNGVLIAQ--NHEVV-ALDIVQAKVDMLNQKISPIVDKEIQEYLAE-KPLNFRATTDKHDAYR--  108 (432)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHT--TSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEEESCHHHHHT--
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHc--CCeEE-EEecCHHHhhHHhccCCccccccHHHHHhh-ccCCeEEEcCHHHHHh--
Confidence            58999999 59999999998874  89877 5664311       10      00011100 0125677899988885  


Q ss_pred             cccCCccEEEEccCch-----------hHH---HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          102 SQSKARAVVIDFTDAS-----------TVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       102 ~~~~~~DVVIDfT~p~-----------~~~---~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                          ++|+||.+++.+           ...   +.+.. ++.|.-+|..+| ..+...+++.+...+..++|
T Consensus       109 ----~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~ST-v~pgtt~~l~~~l~~~~v~~  174 (432)
T 3pid_A          109 ----NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKST-IPVGFTRDIKERLGIDNVIF  174 (432)
T ss_dssp             ----TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSC-CCTTHHHHHHHHHTCCCEEE
T ss_pred             ----CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCC-CChHHHHHHHHHHhhccEee
Confidence                799999665322           122   23333 566666665544 44555566666555556655

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.97  E-value=4.9e-05  Score=61.05  Aligned_cols=105  Identities=12%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ++||+|+| +|.||+.+++.+.+.. +.++. ++|++.  .....+.    +.++  ..+.++++++.      ++|+||
T Consensus         6 ~~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~~------~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAG-LGLIGASLALGIKRDHPHYKIV-GYNRSD--RSRDIAL----ERGIVDEATADFKVFAA------LADVII   71 (290)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEE-EECSSH--HHHHHHH----HTTSCSEEESCTTTTGG------GCSEEE
T ss_pred             cceEEEEe-eCHHHHHHHHHHHhCCCCcEEE-EEcCCH--HHHHHHH----HcCCcccccCCHHHhhc------CCCEEE
Confidence            47999999 5999999999998653 67754 567532  1111111    1233  35677777764      689999


Q ss_pred             EccCchhHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHHhh
Q 031341          112 DFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~---g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                      .+++|....+.+......   .-.+|+-.++......+.|.++..
T Consensus        72 lavp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~  116 (290)
T 3b1f_A           72 LAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLK  116 (290)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHT
T ss_pred             EcCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhcc
Confidence            777776665666554433   123444333333333355555544

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.97  E-value=1e-05  Score=65.31  Aligned_cols=91  Identities=16%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+||+|+|++|+||+.+++.+.+ .++++. ++|++.  .....+.    +.++.+. +.++++.      ++|+||.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~~------~aDvVi~av   75 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHD-SAHHLA-AIEIAP--EGRDRLQ----GMGIPLT-DGDGWID------EADVVVLAL   75 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-SSSEEE-EECCSH--HHHHHHH----HTTCCCC-CSSGGGG------TCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----hcCCCcC-CHHHHhc------CCCEEEEcC
Confidence            47999999559999999999874 578876 677542  1111221    1233333 5556654      799999777


Q ss_pred             CchhHHHHHHHHH---HcCCcEEEeCCCC
Q 031341          115 DASTVYDNVKQAT---AFGMRSVVYVPHI  140 (161)
Q Consensus       115 ~p~~~~~~~~~al---~~g~~vVigttg~  140 (161)
                      .|....+.+....   +.+..+|..+++.
T Consensus        76 ~~~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           76 PDNIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence            7766555554433   2355555555555

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=97.95  E-value=1.8e-05  Score=67.02  Aligned_cols=97  Identities=20%  Similarity=0.151  Sum_probs=62.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec--C------------CCCcchhhh------hcCCCCCCeeeeC-
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--H------------SVGEDIGMV------CDMEQPLEIPVMS-   92 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~--~------------~~g~~~~~~------~g~~~~~~i~v~~-   92 (161)
                      ..+||+|.| +|++||.+++++.+++++|||++-|+  +            .-|+--++.      +-+ ....+.++. 
T Consensus        10 ~~~kv~ING-fGrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v-~Gk~i~v~~~   87 (345)
T 2b4r_O           10 AATKLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLI-GEKKVSVFAE   87 (345)
T ss_dssp             -CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-SSCEEEEECC
T ss_pred             hheEEEEeC-CchHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEE-CCEEEEEEEc
Confidence            358999999 79999999999999999999999982  1            001100000      000 011234443 


Q ss_pred             -CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           93 -DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        93 -dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                       |++++-..   +.++|+|++.|......+.+...++.|.. ||+
T Consensus        88 ~dp~~~~w~---~~gvDiV~estG~f~s~e~a~~hl~aGakkVVI  129 (345)
T 2b4r_O           88 KDPSQIPWG---KCQVDVVCESTGVFLTKELASSHLKGGAKKVIM  129 (345)
T ss_dssp             SSGGGCCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred             CCcccCccc---ccCCCEEEECcCccccHhhHHHHHHCCCCEEEE
Confidence             44443210   12799999888666778888888999865 455

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.95  E-value=4.2e-05  Score=64.39  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=61.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCeeeeCCHHHHHhccccc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~--------g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~  104 (161)
                      ..++||+|+|+ |.||..++..+. ..+.++. +++++..        +.+...+-|..-+.++.+++|+++++.     
T Consensus        27 ~~~mkI~VIGa-G~mG~alA~~La-~~G~~V~-l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~-----   98 (356)
T 3k96_A           27 PFKHPIAILGA-GSWGTALALVLA-RKGQKVR-LWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE-----   98 (356)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHH-TTTCCEE-EECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT-----
T ss_pred             ccCCeEEEECc-cHHHHHHHHHHH-HCCCeEE-EEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh-----
Confidence            34589999995 999999999887 5567755 5564311        111100111111224567789998885     


Q ss_pred             CCccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHH
Q 031341          105 KARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE  143 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e  143 (161)
                       ++|+||-+.++....+.+...   +..+..+|.-+.|+..+
T Consensus        99 -~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A           99 -GVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             -TCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred             -cCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence             799999555444434444332   33466677767777654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.93  E-value=3.4e-05  Score=63.62  Aligned_cols=108  Identities=11%  Similarity=0.039  Sum_probs=68.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCC--C---cchhhhhcCCCCCCeeeeC-CHHHHHhcccccCC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV--G---EDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKA  106 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~--g---~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~  106 (161)
                      .++||+|+| +|.||..+++.+. ..+ +++. ++|++..  .   .....+.    +.|+  ++ ++++++.      +
T Consensus        23 M~m~IgvIG-~G~mG~~lA~~L~-~~G~~~V~-~~dr~~~~~~~~~~~~~~~~----~~g~--~~~s~~e~~~------~   87 (317)
T 4ezb_A           23 MMTTIAFIG-FGEAAQSIAGGLG-GRNAARLA-AYDLRFNDPAASGALRARAA----ELGV--EPLDDVAGIA------C   87 (317)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHH-TTTCSEEE-EECGGGGCTTTHHHHHHHHH----HTTC--EEESSGGGGG------G
T ss_pred             cCCeEEEEC-ccHHHHHHHHHHH-HcCCCeEE-EEeCCCccccchHHHHHHHH----HCCC--CCCCHHHHHh------c
Confidence            357999999 6999999999987 456 7765 6775421  0   0111111    2344  56 7888775      6


Q ss_pred             ccEEEEccCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +|+||-+.++....+.+.....   .|. +|+-+++.++...+++.+..++.++
T Consensus        88 aDvVi~avp~~~~~~~~~~i~~~l~~~~-ivv~~st~~p~~~~~~~~~l~~~g~  140 (317)
T 4ezb_A           88 ADVVLSLVVGAATKAVAASAAPHLSDEA-VFIDLNSVGPDTKALAAGAIATGKG  140 (317)
T ss_dssp             CSEEEECCCGGGHHHHHHHHGGGCCTTC-EEEECCSCCHHHHHHHHHHHHTSSC
T ss_pred             CCEEEEecCCHHHHHHHHHHHhhcCCCC-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence            8999966666666555544333   344 4554555677777778777666543

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=97.92  E-value=3.6e-05  Score=64.77  Aligned_cols=96  Identities=23%  Similarity=0.260  Sum_probs=64.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchhhh------hcCCCCCCeeee--C
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIGMV------CDMEQPLEIPVM--S   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-~-------------~g~~~~~~------~g~~~~~~i~v~--~   92 (161)
                      |+||+|.| .||+||.+.|.+.+.+++|+|++-|.. .             -|+--+++      +-+. ...+.++  .
T Consensus         1 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~-Gk~I~v~~e~   78 (332)
T 3pym_A            1 MVRVAING-FGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVD-GKKIATYQER   78 (332)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEET-TEEEEEECCS
T ss_pred             CeEEEEEC-CCcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEEC-CEEEEEEeec
Confidence            68999999 699999999999988999999998841 0             01100000      0000 1124444  3


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      |++++-..   +.++|+|++.|--....+.+...++.|.. ||+
T Consensus        79 dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI  119 (332)
T 3pym_A           79 DPANLPWG---SSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI  119 (332)
T ss_dssp             SGGGSCTT---TTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEE
T ss_pred             ccccCCcc---ccCccEEEEecccccCHHHHHHHHHcCCCEEEE
Confidence            55554321   24899999888777778889999999964 444

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=97.92  E-value=1.1e-05  Score=68.12  Aligned_cols=95  Identities=26%  Similarity=0.225  Sum_probs=62.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeeeC--CH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVMS--DL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~~--dl   94 (161)
                      +||+|.|+ |++||.+++.+.++++++++++-|..             ..|+-.++.      +-+. ...+.++.  ++
T Consensus         3 ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~-Gk~i~v~~~~dp   80 (342)
T 2ep7_A            3 IKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVD-GKEIKVFAQKDP   80 (342)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEET-TEEEEEECCSSG
T ss_pred             eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEEC-CEEEEEEEcCCh
Confidence            89999995 99999999999989999999998841             112100000      0000 11244443  44


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      +++-..   +.++|+|++.|......+.+..+++.|.. ||+
T Consensus        81 ~~~~w~---~~gvDiV~estG~~~s~e~a~~hl~aGakkVvi  119 (342)
T 2ep7_A           81 SQIPWG---DLGVDVVIEATGVFRDRENASKHLQGGAKKVII  119 (342)
T ss_dssp             GGCCHH---HHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEE
T ss_pred             hhCCcc---ccCCCEEEECCCchhhhhhhHHHHhcCCCEEEe
Confidence            443210   12799999888777778899999999965 444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.90  E-value=9e-05  Score=64.60  Aligned_cols=114  Identities=10%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g-~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ++||+|+| .|.||+.++..+.+ .++++ .++|++.  .....+.. .....++..+.|+++++..+   .++|+||.+
T Consensus         2 ~m~IgvIG-~G~mG~~lA~~La~-~G~~V-~v~dr~~--~~~~~l~~~~~~g~gi~~~~~~~e~v~~l---~~aDvVila   73 (482)
T 2pgd_A            2 QADIALIG-LAVMGQNLILNMND-HGFVV-CAFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILL   73 (482)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHHH-TTCCE-EEECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEEC
T ss_pred             CCeEEEEC-hHHHHHHHHHHHHH-CCCeE-EEEeCCH--HHHHHHHhccccCCCeEEeCCHHHHHhhc---cCCCEEEEe
Confidence            37899999 59999999999874 57774 5777643  22222221 00003567788999887411   279999966


Q ss_pred             cCch-hHHHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          114 TDAS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       114 T~p~-~~~~~~~---~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .++. ...+.+.   ..++.|..+|..+++.. .+..++.+..++.++
T Consensus        74 Vp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~-~~~~~l~~~l~~~g~  120 (482)
T 2pgd_A           74 VKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEY-RDTMRRCRDLKDKGI  120 (482)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTCEEEECSCCCH-HHHHHHHHHHHHTTC
T ss_pred             CCChHHHHHHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHHHHcCC
Confidence            6553 3333333   34456776666666653 333445555444443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.89  E-value=1.1e-06  Score=70.95  Aligned_cols=95  Identities=8%  Similarity=-0.003  Sum_probs=51.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+||+|+|+ |+||+.+++.+.+.  ++++.++|++.  .....+..   ..+. .+.|+++++.      ++|+||.++
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~--~~v~~v~~~~~--~~~~~~~~---~~g~-~~~~~~~~~~------~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR--YEIGYILSRSI--DRARNLAE---VYGG-KAATLEKHPE------LNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTCC-CCCSSCCCCC---------CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc--CcEEEEEeCCH--HHHHHHHH---HcCC-ccCCHHHHHh------cCCEEEEeC
Confidence            479999995 99999999988755  77767888642  11122211   2234 5667776653      689999777


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHH
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigttg~~~e~  144 (161)
                      +|....+.+......+.-+|.-+++.+.+.
T Consensus        67 ~~~~~~~v~~~l~~~~~ivi~~s~~~~~~~   96 (276)
T 2i76_A           67 PDRYIKTVANHLNLGDAVLVHCSGFLSSEI   96 (276)
T ss_dssp             CTTTHHHHHTTTCCSSCCEEECCSSSCGGG
T ss_pred             ChHHHHHHHHHhccCCCEEEECCCCCcHHH
Confidence            776655555433233444443333444443

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.89  E-value=6.9e-05  Score=65.21  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++||+|+| +|.||+.+++.+.+ .++++ .+++++.  .....+.......++..+.|+++++..+   .++|+||.++
T Consensus         5 ~~~IgvIG-~G~mG~~lA~~L~~-~G~~V-~v~dr~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVG-MAVMGKNLALNVES-RGYTV-AIYNRTT--SKTEEVFKEHQDKNLVFTKTLEEFVGSL---EKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEEC-CSHHHHHHHHHHHH-TTCCE-EEECSSH--HHHHHHHHHTTTSCEEECSSHHHHHHTB---CSSCEEEECC
T ss_pred             CCcEEEEe-eHHHHHHHHHHHHh-CCCEE-EEEcCCH--HHHHHHHHhCcCCCeEEeCCHHHHHhhc---cCCCEEEEEc
Confidence            37899999 59999999999974 57774 5777642  1122221100012577788999987511   2499999666


Q ss_pred             Cchh-HHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          115 DAST-VYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       115 ~p~~-~~~~~~~---al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ++.. ..+.+..   .++.|..+|...++. .....++.+..++.++.
T Consensus        77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~-~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           77 QAGAATDATIKSLLPLLDIGDILIDGGNTH-FPDTMRRNAELADSGIN  123 (474)
T ss_dssp             CTTHHHHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHTTTSSCE
T ss_pred             cCchHHHHHHHHHHhhCCCCCEEEECCCCC-HHHHHHHHHHHHHCCCe
Confidence            5533 3344332   344577666655554 33445566666554443

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.87  E-value=6.9e-05  Score=64.95  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-Ceee----eC---CHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPV----MS---DLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v----~~---dl~~~l~~~~~~~~  106 (161)
                      +.||+|+| +|.||+.+++.+. ..+.+ +.+++++.  .+..++..   .. ++..    ..   ++++++.      +
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~-~~G~~-V~v~~R~~--~~a~~la~---~~~~~~~~~~Dv~d~~~l~~~l~------~   68 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLT-DSGIK-VTVACRTL--ESAKKLSA---GVQHSTPISLDVNDDAALDAEVA------K   68 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHH-TTTCE-EEEEESSH--HHHHHTTT---TCTTEEEEECCTTCHHHHHHHHT------T
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCcCE-EEEEECCH--HHHHHHHH---hcCCceEEEeecCCHHHHHHHHc------C
Confidence            35899999 6999999999998 46788 55666542  11222211   11 1111    12   3445553      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      +|+||.++.+..+.+....+++.|++++... -.+ +....|.++|++.++.
T Consensus        69 ~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~-~~~-~~~~~l~~aA~~aGv~  118 (450)
T 1ff9_A           69 HDLVISLIPYTFHATVIKSAIRQKKHVVTTS-YVS-PAMMELDQAAKDAGIT  118 (450)
T ss_dssp             SSEEEECCC--CHHHHHHHHHHHTCEEEESS-CCC-HHHHHTHHHHHHTTCE
T ss_pred             CcEEEECCccccchHHHHHHHhCCCeEEEee-ccc-HHHHHHHHHHHHCCCe
Confidence            9999988866556667788899999987643 233 3456778888887764

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=97.87  E-value=8.3e-05  Score=62.72  Aligned_cols=97  Identities=25%  Similarity=0.295  Sum_probs=64.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee--C
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--S   92 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~--~   92 (161)
                      .++||+|.| .||+||.+.|.+.+.+++|+|++-|..             .-|+--+++      +-+. ...+.++  .
T Consensus         3 m~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~in-Gk~I~v~~e~   80 (338)
T 3lvf_P            3 MAVKVAING-FGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVN-GKEVKSFSEP   80 (338)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEET-TEEEEEECCS
T ss_pred             ccEEEEEEC-CCcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEEC-CEEEEEEEec
Confidence            358999999 699999999999988999999998721             001100000      0010 1124454  4


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      |++++-..   +.++|+|++.|-.....+.+...++.|.. ||+
T Consensus        81 dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI  121 (338)
T 3lvf_P           81 DASKLPWK---DLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI  121 (338)
T ss_dssp             CGGGSCTT---TTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred             ccccCCcc---ccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEE
Confidence            55554321   24899999888777778899999999964 444

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.86  E-value=4.8e-05  Score=60.35  Aligned_cols=86  Identities=12%  Similarity=0.085  Sum_probs=55.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eCC---HHHHHhcccccCCcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARA  108 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~d---l~~~l~~~~~~~~~D  108 (161)
                      |||.|.|++|.+|+.+++.+.+.++.+++++..+.....   .+.    ..++.+    ++|   +++++      .++|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~---~~~----~~~v~~~~~D~~d~~~l~~~~------~~~d   67 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVP---DDW----RGKVSVRQLDYFNQESMVEAF------KGMD   67 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC---GGG----BTTBEEEECCTTCHHHHHHHT------TTCS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHH---Hhh----hCCCEEEEcCCCCHHHHHHHH------hCCC
Confidence            589999999999999999988766999998876432111   111    112222    123   34445      3799


Q ss_pred             EEEEccCc--------hhHHHHHHHHHHcCCc-EE
Q 031341          109 VVIDFTDA--------STVYDNVKQATAFGMR-SV  134 (161)
Q Consensus       109 VVIDfT~p--------~~~~~~~~~al~~g~~-vV  134 (161)
                      +||.++.+        ......+..+.++|+. +|
T Consensus        68 ~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv  102 (289)
T 3e48_A           68 TVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHII  102 (289)
T ss_dssp             EEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEE
Confidence            99987643        2334566788888864 44

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.86  E-value=6.9e-05  Score=58.29  Aligned_cols=94  Identities=14%  Similarity=0.058  Sum_probs=58.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .++||+|+| +|+||+.+++.+.+ .+.++. +++++.  .....+.    +.++.++ ++++++.      ++|+||.+
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~~------~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVG-SGFKVV-VGSRNP--KRTARLF----PSAAQVT-FQEEAVS------SPEVIFVA   90 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EEESSH--HHHHHHS----BTTSEEE-EHHHHTT------SCSEEEEC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCcee-cHHHHHh------CCCEEEEC
Confidence            458999999 69999999999875 467765 566532  1222221    2255554 7777764      79999977


Q ss_pred             cCchhHHHH--HHHHHHcCCcEEEeCCCCCHHH
Q 031341          114 TDASTVYDN--VKQATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus       114 T~p~~~~~~--~~~al~~g~~vVigttg~~~e~  144 (161)
                      +.|....+.  +...+ .+..+|.-++|.+.+.
T Consensus        91 v~~~~~~~v~~l~~~~-~~~~vv~~s~g~~~~~  122 (215)
T 2vns_A           91 VFREHYSSLCSLSDQL-AGKILVDVSNPTEQEH  122 (215)
T ss_dssp             SCGGGSGGGGGGHHHH-TTCEEEECCCCCHHHH
T ss_pred             CChHHHHHHHHHHHhc-CCCEEEEeCCCccccc
Confidence            765432222  22333 6777776666775443

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=97.86  E-value=3.2e-05  Score=65.36  Aligned_cols=98  Identities=20%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhh------hcCCCCCCeeee--
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMV------CDMEQPLEIPVM--   91 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-------------~g~~~~~~------~g~~~~~~i~v~--   91 (161)
                      +.|+||+|.| .||+||.+.|.+.+.+++|+|++-|...             -|+--+++      +-+. ...+.++  
T Consensus         2 ~~~~kv~ING-fGrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~in-Gk~I~v~~e   79 (345)
T 4dib_A            2 NAMTRVAING-FGRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVD-GKMIRLLNN   79 (345)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEET-TEEEEEECC
T ss_pred             CccEEEEEEC-CCcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEEC-CEEEEEeec
Confidence            4589999999 6999999999999889999999988420             01100000      0000 1124454  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      .|++++-..   +.++|+|++.|--....+.+...++.|.. ||+
T Consensus        80 ~dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI  121 (345)
T 4dib_A           80 RDPKELPWT---DLGVEVVIEATGKFNSKEKAILHVEAGAKKVIL  121 (345)
T ss_dssp             SCGGGSCTT---TTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             CChhhCCcc---ccCccEEEEeccCcCCHHHHHHHHHCCCCEEEE
Confidence            455554321   24799999888777778888889999964 444

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.84  E-value=6e-05  Score=57.61  Aligned_cols=92  Identities=15%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |+||.|.|++|.+|+.+++.+.+ .+.+++++..+.........-... -..++.-.+++++++.      ++|+||.+.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~-~~~Dl~d~~~~~~~~~------~~d~vi~~a   75 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALN-RGFEVTAVVRHPEKIKIENEHLKV-KKADVSSLDEVCEVCK------GADAVISAF   75 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHT-TTCEEEEECSCGGGCCCCCTTEEE-ECCCTTCHHHHHHHHT------TCSEEEECC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHH-CCCEEEEEEcCcccchhccCceEE-EEecCCCHHHHHHHhc------CCCEEEEeC
Confidence            68999999999999999999985 578888766532111100000000 0111111123445553      799999876


Q ss_pred             Cch------------hHHHHHHHHHHcCC-cEE
Q 031341          115 DAS------------TVYDNVKQATAFGM-RSV  134 (161)
Q Consensus       115 ~p~------------~~~~~~~~al~~g~-~vV  134 (161)
                      .+.            .....+..+.+.|+ ++|
T Consensus        76 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  108 (227)
T 3dhn_A           76 NPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFL  108 (227)
T ss_dssp             CC------CCSHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             cCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            443            23345677777886 455

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.84  E-value=6.4e-05  Score=57.54  Aligned_cols=91  Identities=15%  Similarity=0.054  Sum_probs=54.1

Q ss_pred             CCee-EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------eCCHHHHHhcccccC
Q 031341           34 SNIK-VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSK  105 (161)
Q Consensus        34 ~~ik-V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-------~~dl~~~l~~~~~~~  105 (161)
                      .|+| |.|.|++|.+|+.+++.+.+.++.+++++..+..  ....++...  ..++.+       .++++++++      
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~--~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~------   72 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK--TRIPPEIID--HERVTVIEGSFQNPGXLEQAVT------   72 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH--HHSCHHHHT--STTEEEEECCTTCHHHHHHHHT------
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc--ccchhhccC--CCceEEEECCCCCHHHHHHHHc------
Confidence            4567 9999999999999999998668999887655321  011111000  112211       123344553      


Q ss_pred             CccEEEEccCchh--HHHHHHHHHHcCC-cEE
Q 031341          106 ARAVVIDFTDAST--VYDNVKQATAFGM-RSV  134 (161)
Q Consensus       106 ~~DVVIDfT~p~~--~~~~~~~al~~g~-~vV  134 (161)
                      ++|+||....+..  ....+..+.+.|. ++|
T Consensus        73 ~~d~vv~~ag~~n~~~~~~~~~~~~~~~~~iv  104 (221)
T 3r6d_A           73 NAEVVFVGAMESGSDMASIVKALSRXNIRRVI  104 (221)
T ss_dssp             TCSEEEESCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEcCCCCChhHHHHHHHHHhcCCCeEE
Confidence            7999997664311  3344556667775 444

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=97.84  E-value=2.9e-05  Score=65.27  Aligned_cols=97  Identities=27%  Similarity=0.222  Sum_probs=63.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhh------hcCCCCCCeeeeC--CH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMV------CDMEQPLEIPVMS--DL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-------------~~~g~~~~~~------~g~~~~~~i~v~~--dl   94 (161)
                      +||+|+|+ |++||.+++.+.++ +++++++-|.             +..|+-.++.      +-+. ...++++.  |+
T Consensus         1 ikVgInG~-G~IGr~vlr~l~~~-~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~-g~~i~v~~~~dp   77 (331)
T 2g82_O            1 MKVGINGF-GRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVD-GKAIRATAVKDP   77 (331)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEET-TEEEEEECCSSG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEEC-CEEEEEEecCCh
Confidence            59999996 99999999999888 9999998873             1123211110      0000 12345542  55


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVigtt  138 (161)
                      +++...   +.++|+|+++|......+.+...++.|. .+|+..+
T Consensus        78 ~~l~w~---~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsap  119 (331)
T 2g82_O           78 KEIPWA---EAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP  119 (331)
T ss_dssp             GGSCTT---TTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhCccc---ccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCC
Confidence            544221   1378999988877777899999999995 3555443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.83  E-value=0.00018  Score=57.48  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=60.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |+||+|+| .|.||+.+++.+.. .++  +++ ++|+..  .......    +.|+  ..++|+++++.     .++|+|
T Consensus         1 m~~I~iIG-~G~mG~~~a~~l~~-~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~~-----~~aDvV   66 (281)
T 2g5c_A            1 MQNVLIVG-VGFMGGSFAKSLRR-SGFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVED-----FSPDFV   66 (281)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHH-TTCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCGGGGGG-----TCCSEE
T ss_pred             CcEEEEEe-cCHHHHHHHHHHHh-cCCCcEEE-EEeCCH--HHHHHHH----HCCCcccccCCHHHHhc-----CCCCEE
Confidence            46899999 59999999999875 455  654 567532  1111111    1233  23567777663     168999


Q ss_pred             EEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                      |.+++|....+.+...   ++.+. +|+-..+......+.|.+...
T Consensus        67 ilavp~~~~~~v~~~l~~~l~~~~-iv~~~~~~~~~~~~~l~~~l~  111 (281)
T 2g5c_A           67 MLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENILG  111 (281)
T ss_dssp             EECSCHHHHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHHG
T ss_pred             EEcCCHHHHHHHHHHHHhhCCCCc-EEEECCCCcHHHHHHHHHhcc
Confidence            9777777665555433   33454 444333333344455555544

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.00022  Score=62.61  Aligned_cols=112  Identities=12%  Similarity=0.074  Sum_probs=67.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g-~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .||+|+| .|.||+.+++.+. ..++++. ++|++.  ....++.. .....++..+.|++++...+   .++|+||-..
T Consensus        11 ~~IgvIG-lG~MG~~lA~~La-~~G~~V~-v~dr~~--~~~~~l~~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIG-LAVMGQNLILNAA-DHGFTVC-AYNRTQ--SKVDHFLANEAKGKSIIGATSIEDFISKL---KRPRKVMLLV   82 (497)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHH-HTTCCEE-EECSSS--HHHHHHHHTTTTTSSEECCSSHHHHHHTS---CSSCEEEECC
T ss_pred             CCEEEEe-eHHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHHcccccCCCeEEeCCHHHHHhcC---CCCCEEEEEc
Confidence            4899999 5999999999997 4578764 777643  22222221 10004677788999987521   2499999555


Q ss_pred             Cch-hHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          115 DAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       115 ~p~-~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      ++. ...+.+...   ++.|.-+|..+++. +....++.+..++.+
T Consensus        83 p~~~~v~~vl~~l~~~l~~g~iIId~s~~~-~~~~~~l~~~l~~~g  127 (497)
T 2p4q_A           83 KAGAPVDALINQIVPLLEKGDIIIDGGNSH-FPDSNRRYEELKKKG  127 (497)
T ss_dssp             CSSHHHHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHhCCCCCEEEECCCCC-hhHHHHHHHHHHHcC
Confidence            542 444444333   33466666666654 344445555554443

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.80  E-value=0.00016  Score=63.13  Aligned_cols=115  Identities=10%  Similarity=0.084  Sum_probs=67.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ++.||+|+| .|.||+.+++.+. ..++++. +++++.  ....++.......++..+.|+++++..+   .++|+||-.
T Consensus        14 ~~~~IgvIG-lG~MG~~lA~~La-~~G~~V~-v~~r~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil~   85 (480)
T 2zyd_A           14 SKQQIGVVG-MAVMGRNLALNIE-SRGYTVS-IFNRSR--EKTEEVIAENPGKKLVPYYTVKEFVESL---ETPRRILLM   85 (480)
T ss_dssp             -CBSEEEEC-CSHHHHHHHHHHH-TTTCCEE-EECSSH--HHHHHHHHHSTTSCEEECSSHHHHHHTB---CSSCEEEEC
T ss_pred             CCCeEEEEc-cHHHHHHHHHHHH-hCCCeEE-EEeCCH--HHHHHHHhhCCCCCeEEeCCHHHHHhCC---CCCCEEEEE
Confidence            357899999 5999999999997 5678754 677542  1122221100002677788999987511   149999955


Q ss_pred             cCch-hHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          114 TDAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       114 T~p~-~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .++. ...+.+...   ++.|..+|..+++.. ....++.+..++.++
T Consensus        86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~-~~t~~l~~~l~~~g~  132 (480)
T 2zyd_A           86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFF-QDTIRRNRELSAEGF  132 (480)
T ss_dssp             SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHHHHCCC
Confidence            5552 344444433   334666666666653 333445555544443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.79  E-value=0.00016  Score=57.26  Aligned_cols=91  Identities=14%  Similarity=0.155  Sum_probs=56.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC---cc---------hhhhhcCCCCCCeeeeCCHHHHHhcc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG---ED---------IGMVCDMEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g---~~---------~~~~~g~~~~~~i~v~~dl~~~l~~~  101 (161)
                      ..+||+|+| +|.||+.+++.+.+ .++++. ++|++...   ..         ..++.   ...+...+.++++++.  
T Consensus        18 ~~~kIgiIG-~G~mG~alA~~L~~-~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~--   89 (245)
T 3dtt_A           18 QGMKIAVLG-TGTVGRTMAGALAD-LGHEVT-IGTRDPKATLARAEPDAMGAPPFSQWL---PEHPHVHLAAFADVAA--   89 (245)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EEESCHHHHHTCC-------CCHHHHG---GGSTTCEEEEHHHHHH--
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEeCChhhhhhhhhhhhhcchhhhHHH---hhcCceeccCHHHHHh--
Confidence            458999999 59999999999874 578865 56754210   00         11221   1223344678888875  


Q ss_pred             cccCCccEEEEccCchhHHHHHH----HHHHcCCcEEEeC
Q 031341          102 SQSKARAVVIDFTDASTVYDNVK----QATAFGMRSVVYV  137 (161)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~~~~~~----~al~~g~~vVigt  137 (161)
                          .+|+||-+.++....+.+.    ..+ .|..+|..+
T Consensus        90 ----~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           90 ----GAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             ----HCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             ----cCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence                6899996666665554443    233 566666544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.78  E-value=4.7e-06  Score=68.77  Aligned_cols=87  Identities=14%  Similarity=0.077  Sum_probs=59.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ..+|+|+| +|.||+.+++.+.+..+++-+.++|++.  ....++..   ..+  +..++++++++.      .+|+|+-
T Consensus       135 ~~~igiIG-~G~~g~~~a~~l~~~~g~~~V~v~dr~~--~~~~~l~~---~~~~~~~~~~~~~e~v~------~aDiVi~  202 (312)
T 2i99_A          135 SEVLCILG-AGVQAYSHYEIFTEQFSFKEVRIWNRTK--ENAEKFAD---TVQGEVRVCSSVQEAVA------GADVIIT  202 (312)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCCCSEEEEECSSH--HHHHHHHH---HSSSCCEECSSHHHHHT------TCSEEEE
T ss_pred             CcEEEEEC-CcHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHH---HhhCCeEEeCCHHHHHh------cCCEEEE
Confidence            47899999 5999999999998776776677888653  12222221   223  566789999885      6899996


Q ss_pred             ccCchhHHHHHH-HHHHcCCcEEE
Q 031341          113 FTDASTVYDNVK-QATAFGMRSVV  135 (161)
Q Consensus       113 fT~p~~~~~~~~-~al~~g~~vVi  135 (161)
                      .| |.. .+.+. ..++.|.+++.
T Consensus       203 at-p~~-~~v~~~~~l~~g~~vi~  224 (312)
T 2i99_A          203 VT-LAT-EPILFGEWVKPGAHINA  224 (312)
T ss_dssp             CC-CCS-SCCBCGGGSCTTCEEEE
T ss_pred             Ee-CCC-CcccCHHHcCCCcEEEe
Confidence            65 432 22221 45678888776

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.78  E-value=0.00011  Score=64.05  Aligned_cols=113  Identities=10%  Similarity=0.095  Sum_probs=66.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCC-CCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~---g~~-~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |||+|+| .|.||+.++..+.+ .++++ .+++++.  .....+.   |.. ...++..+.|+++++..+   .++|+||
T Consensus         2 MkIgVIG-~G~mG~~lA~~La~-~G~~V-~v~dr~~--~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l---~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVG-LGVMGANLALNIAE-KGFKV-AVFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (478)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCE-EEECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEEC-hHHHHHHHHHHHHH-CCCEE-EEEeCCH--HHHHHHHHhcCCCCCCCCeEEECCHHHHHhcc---cCCCEEE
Confidence            6899999 59999999999874 57775 5777542  1111111   100 011266778999887521   2599999


Q ss_pred             EccCch-hHHHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          112 DFTDAS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       112 DfT~p~-~~~~~~~---~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .+..+. ...+.+.   ..++.|..+|...++.. ....++.+..++.++
T Consensus        74 laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~-~~~~~l~~~l~~~g~  122 (478)
T 1pgj_A           74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHF-KDQGRRAQQLEAAGL  122 (478)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCH-HHHHHHHHHHHTTTC
T ss_pred             EecCChHHHHHHHHHHHhhCCCCCEEEECCCCCh-HHHHHHHHHHHHCCC
Confidence            666553 3333333   34456776666666653 334445555554443

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.76  E-value=0.00024  Score=56.57  Aligned_cols=99  Identities=11%  Similarity=0.161  Sum_probs=60.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |||+|+| .|.||+.+++.+.+ .++++. ++|++.  .....+.    +.++  .++++++++ .      ++|+||.+
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~-~------~~D~vi~a   64 (279)
T 2f1k_A            1 MKIGVVG-LGLIGASLAGDLRR-RGHYLI-GVSRQQ--STCEKAV----ERQLVDEAGQDLSLL-Q------TAKIIFLC   64 (279)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTSCSEEESCGGGG-T------TCSEEEEC
T ss_pred             CEEEEEc-CcHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----hCCCCccccCCHHHh-C------CCCEEEEE
Confidence            5899999 59999999999874 467755 456532  1111211    2233  246788777 5      79999977


Q ss_pred             cCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHH
Q 031341          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       114 T~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~L~~~  151 (161)
                      ++|....+.+.....   .+..+ +-+.+.+....+.+.+.
T Consensus        65 v~~~~~~~~~~~l~~~~~~~~~v-v~~~~~~~~~~~~~~~~  104 (279)
T 2f1k_A           65 TPIQLILPTLEKLIPHLSPTAIV-TDVASVKTAIAEPASQL  104 (279)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEE-EECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEE-EECCCCcHHHHHHHHHH
Confidence            777665555554332   34444 43445665555555544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.73  E-value=8.6e-05  Score=56.73  Aligned_cols=86  Identities=8%  Similarity=0.155  Sum_probs=53.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eCC-HHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD-LTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~d-l~~~l~~~~~~~~~DVV  110 (161)
                      |||.|.|++|.+|+.+++.+. ..+.+++++..+.....   +.      .++.+    ..| .+++...+   .++|+|
T Consensus         1 M~ilItGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~---~~------~~~~~~~~D~~d~~~~~~~~~---~~~d~v   67 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLS-TTDYQIYAGARKVEQVP---QY------NNVKAVHFDVDWTPEEMAKQL---HGMDAI   67 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHT-TSSCEEEEEESSGGGSC---CC------TTEEEEECCTTSCHHHHHTTT---TTCSEE
T ss_pred             CeEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCccchh---hc------CCceEEEecccCCHHHHHHHH---cCCCEE
Confidence            589999999999999999997 45799887766421111   00      11111    123 33332221   379999


Q ss_pred             EEccCch----------hHHHHHHHHHHcCC-cEE
Q 031341          111 IDFTDAS----------TVYDNVKQATAFGM-RSV  134 (161)
Q Consensus       111 IDfT~p~----------~~~~~~~~al~~g~-~vV  134 (161)
                      |.+..+.          .....++.+.+.|+ ++|
T Consensus        68 i~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv  102 (219)
T 3dqp_A           68 INVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFI  102 (219)
T ss_dssp             EECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             EECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEE
Confidence            9876332          24566777888885 455

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.68  E-value=0.00016  Score=59.41  Aligned_cols=45  Identities=20%  Similarity=0.102  Sum_probs=31.4

Q ss_pred             EEeeCCCCC---CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           25 ISCSTNPPQ---SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        25 ~~~~~~~~~---~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +-|+.++..   .|+||.|.|++|.+|+.+++.+.+.++.+++++..+
T Consensus        11 ~~~~~~~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   58 (372)
T 3slg_A           11 TLEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQ   58 (372)
T ss_dssp             ------------CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESC
T ss_pred             chhhhhcCCcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCC
Confidence            345555553   257999999999999999999998778998887654

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=97.65  E-value=8.2e-05  Score=62.74  Aligned_cols=96  Identities=18%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchh-hh-------hcCCCCCCeeee-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIG-MV-------CDMEQPLEIPVM-   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--------------~~g~~~~-~~-------~g~~~~~~i~v~-   91 (161)
                      ++||+|.| .||+||.+.|.+.+.+++|+|++-|..              .-|+--+ ++       +-+. ...+.++ 
T Consensus         3 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~-Gk~I~v~~   80 (337)
T 3v1y_O            3 KIKIGING-FGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLG-EKPVTVFG   80 (337)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEET-TEEEEEEC
T ss_pred             ceEEEEEC-CChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEEC-CEEEEEEE
Confidence            68999999 699999999999988999999998851              0011011 00       0000 1124444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                       .|++++-..   +.++|+|++.|-.....+.+...++.|.. ||+
T Consensus        81 e~dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI  123 (337)
T 3v1y_O           81 IRNPDEIPWA---EAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVI  123 (337)
T ss_dssp             CSSGGGCCHH---HHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEE
T ss_pred             ecCcccCCcc---ccCCcEEEEeccccCCHHHHHHHHHcCCCEEEE
Confidence             445443210   13799999888777778888899999964 444

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.64  E-value=5e-05  Score=59.96  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |||+|+| .|.||+.+++.+.+. + .++ .++|++.  .....+.   ..+++.+++++++++       ++|+||.++
T Consensus         1 m~i~iiG-~G~mG~~~a~~l~~~-g~~~v-~~~~r~~--~~~~~~~---~~~g~~~~~~~~~~~-------~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLG-GGNMAAAVAGGLVKQ-GGYRI-YIANRGA--EKRERLE---KELGVETSATLPELH-------SDDVLILAV   65 (263)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHH-CSCEE-EEECSSH--HHHHHHH---HHTCCEEESSCCCCC-------TTSEEEECS
T ss_pred             CEEEEEC-chHHHHHHHHHHHHC-CCCeE-EEECCCH--HHHHHHH---HhcCCEEeCCHHHHh-------cCCEEEEEe
Confidence            5899999 599999999998754 5 554 5677542  1222221   123566666665543       479999666


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                      .|....+.+......+..+|.-+.|++.+   .|.+...
T Consensus        66 ~~~~~~~v~~~l~~~~~ivv~~~~g~~~~---~l~~~~~  101 (263)
T 1yqg_A           66 KPQDMEAACKNIRTNGALVLSVAAGLSVG---TLSRYLG  101 (263)
T ss_dssp             CHHHHHHHHTTCCCTTCEEEECCTTCCHH---HHHHHTT
T ss_pred             CchhHHHHHHHhccCCCEEEEecCCCCHH---HHHHHcC
Confidence            65544444432211244444433577764   3444443

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=97.64  E-value=0.00025  Score=59.94  Aligned_cols=100  Identities=21%  Similarity=0.223  Sum_probs=63.5

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh------hcCCCCCCeeee
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV------CDMEQPLEIPVM   91 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--------------~g~~~~~~------~g~~~~~~i~v~   91 (161)
                      ..+|+||+|.| .||+||.++|.+...+ ++++++-|+..              -|+--+++      +-+. ...+.++
T Consensus         4 ~~~~~kvgInG-FGRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~-Gk~I~v~   80 (346)
T 3h9e_O            4 VARELTVGING-FGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVD-NHEISVY   80 (346)
T ss_dssp             --CCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEET-TEEEEEE
T ss_pred             cCCeeEEEEEC-CChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEEC-CEEEEEE
Confidence            34689999999 6999999999988765 99999988410              01100000      0010 1124444


Q ss_pred             --CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeC
Q 031341           92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYV  137 (161)
Q Consensus        92 --~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVigt  137 (161)
                        .|++++-..   +.++|+|++.|-.....+.+...++.|. .||+-.
T Consensus        81 ~e~dp~~i~W~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsa  126 (346)
T 3h9e_O           81 QCKEPKQIPWR---AVGSPYVVESTGVYLSIQAASDHISAGAQRVVISA  126 (346)
T ss_dssp             CCSSGGGCCGG---GGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESS
T ss_pred             ecCChhhCCcc---cccccEEEEeccccCCHHHHHHHHHcCCCEEEECC
Confidence              344444321   2379999988877777888999999995 455543

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.63  E-value=0.00013  Score=60.56  Aligned_cols=99  Identities=12%  Similarity=0.107  Sum_probs=59.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-------hcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~-------~g~~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      ||+|+|+ |.||..++..+. ..+.++. +++++.. -..+.+.       .+..-..++.+++|+++++.      ++|
T Consensus        17 kI~iIG~-G~mG~~la~~L~-~~G~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~aD   87 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLS-KKCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------GAE   87 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------TCS
T ss_pred             eEEEECC-CHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc------CCC
Confidence            9999995 999999999887 5567755 5664311 0111110       01000124566788988774      799


Q ss_pred             EEEEccCchhHHHHH-------HHHHHc-CCcEEEeCCCCCHHH
Q 031341          109 VVIDFTDASTVYDNV-------KQATAF-GMRSVVYVPHIQLET  144 (161)
Q Consensus       109 VVIDfT~p~~~~~~~-------~~al~~-g~~vVigttg~~~e~  144 (161)
                      +||.+..+....+.+       ...+.. +..+|.-+.|++.+.
T Consensus        88 vVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~  131 (366)
T 1evy_A           88 IILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERST  131 (366)
T ss_dssp             SEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTT
T ss_pred             EEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCcc
Confidence            999666554443333       234555 777776665766543

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=97.63  E-value=0.00019  Score=60.52  Aligned_cols=96  Identities=21%  Similarity=0.217  Sum_probs=62.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhh------hcCCCCCCeeee--
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMV------CDMEQPLEIPVM--   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~~-------------~g~~~~~~------~g~~~~~~i~v~--   91 (161)
                      ++||+|.| .||+||.+.|.+.+.  +++|+|++-|...             -|+--+++      +-+. ...+.++  
T Consensus         2 ~~kv~ING-fGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~-Gk~I~v~~e   79 (335)
T 3doc_A            2 AVRVAING-FGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVG-YGPIKVHAV   79 (335)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESS-SSEEEEECC
T ss_pred             CEEEEEEC-CCcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEEC-CEEEEEEee
Confidence            48999999 699999999998877  7899999988410             01100000      0010 1234454  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      .|++++-..   +.++|+|++.|--....+.+...++.|.. ||+
T Consensus        80 ~dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI  121 (335)
T 3doc_A           80 RNPAELPWK---EENVDIALECTGIFTSRDKAALHLEAGAKRVIV  121 (335)
T ss_dssp             SSTTSSCTT---TTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred             ccccccccc---ccCCCEEEEccCccCCHHHHHHHHHcCCCEEEE
Confidence            344443221   24899999888777778888999999964 444

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.62  E-value=7.5e-05  Score=62.50  Aligned_cols=116  Identities=17%  Similarity=0.196  Sum_probs=62.1

Q ss_pred             ecccccccccccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhh
Q 031341           10 CRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMV   79 (161)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~-------~eLvavvd~~~~--g~-~~~~~   79 (161)
                      -.-||.-.|.    |++    ++..|+||+|+| .|.||..++..+.+. +       .++. +++++..  +. ....+
T Consensus         4 ~~~~~~~~~~----~~~----~~~~~~kI~iIG-aG~mG~alA~~L~~~-G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l   72 (375)
T 1yj8_A            4 HHHHHMYRNL----FDK----LKDGPLKISILG-SGNWASAISKVVGTN-AKNNYLFENEVR-MWIRDEFVNGERMVDII   72 (375)
T ss_dssp             ------CCSH----HHH----HHHSCBCEEEEC-CSHHHHHHHHHHHHH-HHHCTTBCSCEE-EECCSCC---CCHHHHH
T ss_pred             chhHHHHHHH----Hhc----CccCCCEEEEEC-cCHHHHHHHHHHHHc-CCccCCCCCeEE-EEECChhhhhHHHHHHH
Confidence            3446666664    222    223467999999 599999999998753 4       5654 5664321  00 11111


Q ss_pred             h----------cCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHH-------cCCcEEEeCCCCCH
Q 031341           80 C----------DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-------FGMRSVVYVPHIQL  142 (161)
Q Consensus        80 ~----------g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~-------~g~~vVigttg~~~  142 (161)
                      .          +..-+.++..++|+++++.      ++|+||-+..+....+.+.....       .+..+|.-+.|++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~i~~~~~~~ea~~------~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           73 NNKHENTKYLKGVPLPHNIVAHSDLASVIN------DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             HHHCBCTTTSTTCBCCTTEEEESSTHHHHT------TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             HhcCcccccCCcccCcCCeEEECCHHHHHc------CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            0          1100124667788888774      79999955555444444443222       34556665557654

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.00055  Score=58.67  Aligned_cols=123  Identities=15%  Similarity=0.176  Sum_probs=62.2

Q ss_pred             cccccccccccceeEE---eeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCC-----c-EEEEEEecC--CCC------
Q 031341           11 RMHHISQNVKAKRFIS---CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-----M-EVAGAIDSH--SVG------   73 (161)
Q Consensus        11 ~~~~~~~~~~~~~~~~---~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~-----~-eLvavvd~~--~~g------   73 (161)
                      |.-+.++++.++|--+   ++....++|+||+|+|+ |.+|.+++..+.+...     + .-|-+..++  ..+      
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~   85 (391)
T 4fgw_A            7 RLNLTSGHLNAGRKRSSSSVSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEI   85 (391)
T ss_dssp             --------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHH
T ss_pred             HHHHHhhhhccccccccccccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHH
Confidence            3344466665544322   23333456899999995 9999999998874311     0 113233321  111      


Q ss_pred             -----cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCchhHH-HHHHH---HHHcCCcEEEeCCCCC
Q 031341           74 -----EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY-DNVKQ---ATAFGMRSVVYVPHIQ  141 (161)
Q Consensus        74 -----~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~-~~~~~---al~~g~~vVigttg~~  141 (161)
                           .+..-+-|+.-+.++.+++|+++++.      ++|+|| +..|.... +.+..   .+..+.++|..+-|+.
T Consensus        86 in~~~~N~~YLpgv~Lp~~i~~t~dl~~al~------~ad~ii-~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A           86 INTRHQNVKYLPGITLPDNLVANPDLIDSVK------DVDIIV-FNIPHQFLPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             HTTTCCBTTTBTTCCCCSSEEEESCHHHHHT------TCSEEE-ECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             HHhcCcCcccCCCCcCCCCcEEeCCHHHHHh------cCCEEE-EECChhhhHHHHHHhccccCCCceeEEeccccc
Confidence                 12122223322446788999999985      799999 66666554 34333   3456778888777874

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.59  E-value=0.00097  Score=58.52  Aligned_cols=115  Identities=11%  Similarity=0.123  Sum_probs=66.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .|+||+|+| .|.||+.+++.+. ..+++++ ++|++.  .....+.... ....+..+.+++++.+.+   ..+|+|+-
T Consensus         3 ~~~kIgiIG-lG~MG~~lA~~L~-~~G~~V~-v~dr~~--~~~~~l~~~g~~g~~i~~~~s~~e~v~~l---~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIG-LAVMGQNLILNMN-DHGFVVC-AFNRTV--SKVDDFLANEAKGTKVVGAQSLKEMVSKL---KKPRRIIL   74 (484)
T ss_dssp             CCBSEEEEC-CSHHHHHHHHHHH-HTTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHTB---CSSCEEEE
T ss_pred             CCCEEEEEC-hhHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHHhcccCCCceeccCCHHHHHhhc---cCCCEEEE
Confidence            458999999 6999999999987 4578765 667643  2222222110 011334468999987521   25899995


Q ss_pred             ccCch-hHHHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          113 FTDAS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       113 fT~p~-~~~~~~~---~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      ..++. ...+.+.   ..++.|.-+|-++++. +.+..++.+..++.++
T Consensus        75 ~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~-~~~t~~~~~~l~~~Gi  122 (484)
T 4gwg_A           75 LVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSE-YRDTTRRCRDLKAKGI  122 (484)
T ss_dssp             CSCSSHHHHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHHHHTTC
T ss_pred             ecCChHHHHHHHHHHHHhcCCCCEEEEcCCCC-chHHHHHHHHHHhhcc
Confidence            55553 3333333   3344566666666654 3333444444444444

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.58  E-value=5.8e-05  Score=62.18  Aligned_cols=99  Identities=10%  Similarity=0.156  Sum_probs=58.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-----CCCCeeeeCCHHHHHhcccccCC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-----QPLEIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~--g~~-----~~~~i~v~~dl~~~l~~~~~~~~  106 (161)
                      .++||+|+| .|.||..++..+. ..+.++. +++++.  .....+.  |..     ...++.+++|+++ +.      .
T Consensus        13 ~~~kI~iIG-~G~mG~ala~~L~-~~G~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~------~   80 (335)
T 1z82_A           13 MEMRFFVLG-AGSWGTVFAQMLH-ENGEEVI-LWARRK--EIVDLINVSHTSPYVEESKITVRATNDLEE-IK------K   80 (335)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSH--HHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC------T
T ss_pred             cCCcEEEEC-cCHHHHHHHHHHH-hCCCeEE-EEeCCH--HHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc------C
Confidence            458999999 5999999999987 4577754 566531  1111111  100     0013566788887 53      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHH
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~  144 (161)
                      +|+||-+..|....+.+......+..+|.-+.|++.++
T Consensus        81 aDvVil~vk~~~~~~v~~~l~~~~~~vv~~~nGi~~~~  118 (335)
T 1z82_A           81 EDILVIAIPVQYIREHLLRLPVKPSMVLNLSKGIEIKT  118 (335)
T ss_dssp             TEEEEECSCGGGHHHHHTTCSSCCSEEEECCCCCCTTT
T ss_pred             CCEEEEECCHHHHHHHHHHhCcCCCEEEEEeCCCCCCc
Confidence            99999666554444444322114666666565766543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.57  E-value=6.3e-05  Score=54.57  Aligned_cols=87  Identities=10%  Similarity=0.106  Sum_probs=55.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..||+|+|+ |.||+.+++.+.. .+++ +.+++++..  +..++.... ...+..++++++++.      ++|+||.+|
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~-~g~~-v~v~~r~~~--~~~~~a~~~-~~~~~~~~~~~~~~~------~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSY-PQYK-VTVAGRNID--HVRAFAEKY-EYEYVLINDIDSLIK------NNDVIITAT   88 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCT-TTCE-EEEEESCHH--HHHHHHHHH-TCEEEECSCHHHHHH------TCSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCE-EEEEcCCHH--HHHHHHHHh-CCceEeecCHHHHhc------CCCEEEEeC
Confidence            368999995 9999999998875 7899 888886431  122222100 112335678888885      799999877


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031341          115 DASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vV  134 (161)
                      +..... .....++.|..++
T Consensus        89 ~~~~~~-~~~~~l~~g~~vi  107 (144)
T 3oj0_A           89 SSKTPI-VEERSLMPGKLFI  107 (144)
T ss_dssp             CCSSCS-BCGGGCCTTCEEE
T ss_pred             CCCCcE-eeHHHcCCCCEEE
Confidence            533211 1123456677766

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.48  E-value=0.0013  Score=57.15  Aligned_cols=108  Identities=13%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCC---------------CCCCeeeeCCHHHH
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME---------------QPLEIPVMSDLTMV   97 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~-g~~---------------~~~~i~v~~dl~~~   97 (161)
                      +.+||+|+| +|.||..++..+. ..|++++ ++|++..  .+..+. +..               .+..+.+++|++++
T Consensus         7 ~~~~~~vIG-lG~vG~~~A~~La-~~G~~V~-~~D~~~~--kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea   81 (446)
T 4a7p_A            7 GSVRIAMIG-TGYVGLVSGACFS-DFGHEVV-CVDKDAR--KIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEG   81 (446)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCST--THHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH
T ss_pred             CceEEEEEc-CCHHHHHHHHHHH-HCCCEEE-EEeCCHH--HHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHH
Confidence            458999999 6999999999887 5588876 5564321  111111 000               01236678999888


Q ss_pred             HhcccccCCccEEEEcc-Cch----------hHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341           98 LGSISQSKARAVVIDFT-DAS----------TVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT-~p~----------~~~~~~---~~al~~g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                      +.      ++|++|.+- +|.          ...+.+   ...++.|.-+|..+| ..+...+++.+..+
T Consensus        82 ~~------~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgtt~~l~~~l~  144 (446)
T 4a7p_A           82 VK------DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKST-VPVGTGDEVERIIA  144 (446)
T ss_dssp             HT------TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSC-CCTTHHHHHHHHHH
T ss_pred             Hh------cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCC-CCchHHHHHHHHHH
Confidence            85      799998652 332          133333   333445666666544 55545555544443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.47  E-value=0.00063  Score=54.84  Aligned_cols=102  Identities=13%  Similarity=0.081  Sum_probs=59.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh--------h----cCCC------CCCeeeeCCHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV--------C----DMEQ------PLEIPVMSDLT   95 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~--------~----g~~~------~~~i~v~~dl~   95 (161)
                      +.||+|+|+ |.||+.++..+. ..+++++ ++|++... ....+.        .    ++..      ...+..++|++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~   80 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTA-FHGFAVT-AYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA   80 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence            358999995 999999999887 5588865 56754210 011100        0    0000      01245678998


Q ss_pred             HHHhcccccCCccEEEEccCch--hHH---HHHHHHHHcCCcEEEeCCCCCHHHH
Q 031341           96 MVLGSISQSKARAVVIDFTDAS--TVY---DNVKQATAFGMRSVVYVPHIQLETV  145 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~--~~~---~~~~~al~~g~~vVigttg~~~e~~  145 (161)
                      +++.      ++|+||.+..++  ...   +.+...+..+.-++.-|++++.+++
T Consensus        81 ~~~~------~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~l  129 (283)
T 4e12_A           81 QAVK------DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL  129 (283)
T ss_dssp             HHTT------TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHhc------cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence            8874      799999776543  222   2333334445544445567776544

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.45  E-value=0.0008  Score=56.58  Aligned_cols=91  Identities=14%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe---cCCCCcchhhhh---cC----CCCCC--------ee-eeCCHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVC---DM----EQPLE--------IP-VMSDLT   95 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd---~~~~g~~~~~~~---g~----~~~~~--------i~-v~~dl~   95 (161)
                      ||||+|+|+ |.||..++..+....+.++. +++   +..  .......   |.    ....+        +. +++|++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~~V~-~~~~~~r~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGVEVR-VLTLFADEA--ERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPE   77 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTEEEE-EECCSTTHH--HHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCCEEE-EEeCCCCcH--HHHHHHHhhccceeeeecCCCccceeeccceEEeCCHH
Confidence            479999995 99999999988654688876 445   311  1111100   00    00001        22 567888


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHHHHHH---HcCCcEEE
Q 031341           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVV  135 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al---~~g~~vVi  135 (161)
                      +++.      .+|+||.++.+....+.+....   ..+..+|+
T Consensus        78 ~a~~------~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           78 IAIS------GADVVILTVPAFAHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHHT------TCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEE
T ss_pred             HHhC------CCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEE
Confidence            8774      7999996665555544444332   23554555

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.45  E-value=0.0003  Score=56.61  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcC----C-cEEEEEEecCCCCcchhhhh---cCC--C------CCCeeeeCCHHH
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKAR----G-MEVAGAIDSHSVGEDIGMVC---DME--Q------PLEIPVMSDLTM   96 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~----~-~eLvavvd~~~~g~~~~~~~---g~~--~------~~~i~v~~dl~~   96 (161)
                      +.||||+|+| .|.||..++..+.+.+    + .++. ++++.   .....+.   |..  .      ...+.++++.+.
T Consensus         6 ~~~m~I~iiG-~G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r~---~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (317)
T 2qyt_A            6 QQPIKIAVFG-LGGVGGYYGAMLALRAAATDGLLEVS-WIARG---AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAE   80 (317)
T ss_dssp             -CCEEEEEEC-CSHHHHHHHHHHHHHHHHTTSSEEEE-EECCH---HHHHHHHHHTSEEEECSSCEEEECCSEEESCHHH
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHhCccccCCCCCEE-EEEcH---HHHHHHHhcCCeEEEeCCCCeEEecceEecCccc
Confidence            3458999999 5999999999988652    6 7766 45542   1111111   110  0      011223345543


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHHHHH---HcCCcEEEeCCCCCH
Q 031341           97 VLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL  142 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al---~~g~~vVigttg~~~  142 (161)
                       .      ..+|+||-++.+....+.+....   ..+..+|.-+.|+..
T Consensus        81 -~------~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           81 -V------GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             -H------CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             -c------CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence             3      37999996666665544444332   235556666678764

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.45  E-value=0.00065  Score=57.06  Aligned_cols=100  Identities=17%  Similarity=0.067  Sum_probs=52.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. .-|+++. ++|+....           ..+...+.++++++.      .+|+|+-..+
T Consensus       172 ktiGIIG-lG~IG~~vA~~l~-~~G~~V~-~~dr~~~~-----------~~~~~~~~sl~ell~------~aDvVil~vP  231 (340)
T 4dgs_A          172 KRIGVLG-LGQIGRALASRAE-AFGMSVR-YWNRSTLS-----------GVDWIAHQSPVDLAR------DSDVLAVCVA  231 (340)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSCCT-----------TSCCEECSSHHHHHH------TCSEEEECC-
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEcCCccc-----------ccCceecCCHHHHHh------cCCEEEEeCC
Confidence            7999999 6999999999987 5688865 56654210           112334679999986      7999995443


Q ss_pred             chh-HH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          116 AST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       116 p~~-~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      ... ..    +.....++.|.-+|-...|-- -+.+.|.++.++..
T Consensus       232 ~t~~t~~li~~~~l~~mk~gailIN~aRG~v-vde~aL~~aL~~g~  276 (340)
T 4dgs_A          232 ASAATQNIVDASLLQALGPEGIVVNVARGNV-VDEDALIEALKSGT  276 (340)
T ss_dssp             ---------CHHHHHHTTTTCEEEECSCC---------------CC
T ss_pred             CCHHHHHHhhHHHHhcCCCCCEEEECCCCcc-cCHHHHHHHHHcCC
Confidence            121 11    223344555655553333432 23344555544443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.45  E-value=0.0013  Score=56.84  Aligned_cols=102  Identities=11%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCC---------------CCCCeeeeCCHHHHHh
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME---------------QPLEIPVMSDLTMVLG   99 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~-g~~---------------~~~~i~v~~dl~~~l~   99 (161)
                      |||+|+| +|.||..++..+. ..+.+++ ++|++..  .+..+. |..               ....+.+++|+++++.
T Consensus         3 mkI~VIG-~G~vG~~lA~~La-~~G~~V~-~~D~~~~--~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~   77 (450)
T 3gg2_A            3 LDIAVVG-IGYVGLVSATCFA-ELGANVR-CIDTDRN--KIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP   77 (450)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCHH--HHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-hcCCEEE-EEECCHH--HHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh
Confidence            7999999 5999999999987 4578877 6674321  111110 000               0124667889999875


Q ss_pred             cccccCCccEEEEccCch----------hHHH---HHHHHHHcCCcEEEeCCCCCHHHHHHHH
Q 031341          100 SISQSKARAVVIDFTDAS----------TVYD---NVKQATAFGMRSVVYVPHIQLETVSALS  149 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~----------~~~~---~~~~al~~g~~vVigttg~~~e~~~~L~  149 (161)
                            ++|+||.+.++.          ...+   .+...++.|.-+|..+| ..+...+++.
T Consensus        78 ------~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgt~~~l~  133 (450)
T 3gg2_A           78 ------EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST-VPVGSYRLIR  133 (450)
T ss_dssp             ------GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC-CCTTHHHHHH
T ss_pred             ------cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee-CCCcchHHHH
Confidence                  699999655322          2333   33344556666666554 4333333343

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.44  E-value=0.00052  Score=55.62  Aligned_cols=101  Identities=16%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-h----h----hh--hcCCCC------------CCeeee
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-I----G----MV--CDMEQP------------LEIPVM   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~-~----~----~~--~g~~~~------------~~i~v~   91 (161)
                      |.||+|+|+ |.||..++..+. ..+++++ ++|++....+ .    .    .+  .|....            ..+.++
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la-~~G~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~   91 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAA-ATGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS   91 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe
Confidence            468999995 999999999987 4588865 6775321000 0    0    00  010000            135567


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchh-HH-HHHHH---HHHcCCcEEEeCCCCCHHH
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDAST-VY-DNVKQ---ATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~-~~-~~~~~---al~~g~~vVigttg~~~e~  144 (161)
                      +|+++++.      ++|+||.+.+++. .. +....   .+..+.-+++-|.+++.++
T Consensus        92 ~~~~~~~~------~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~  143 (302)
T 1f0y_A           92 TDAASVVH------STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS  143 (302)
T ss_dssp             SCHHHHTT------SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH
T ss_pred             cCHHHhhc------CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHH
Confidence            88887774      7999996664432 12 22222   2222343444455776654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.42  E-value=0.00056  Score=50.90  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=28.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +||.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~-~g~~V~~~~r~   36 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRD   36 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH-CCCeEEEEEeC
Confidence            6899999999999999999985 47898876653

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.42  E-value=0.00042  Score=56.70  Aligned_cols=93  Identities=15%  Similarity=0.103  Sum_probs=56.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCC--CC-----CCe-eeeCCHHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDME--QP-----LEI-PVMSDLTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~--~~-----~~i-~v~~dl~~~l~~~~~~~  105 (161)
                      ++||+|+|+ |.||+.++..+.+ .+.++. ++++.... ..+.+..+..  ..     ..+ ..++++++++.      
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~-~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   74 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK------   74 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT------
T ss_pred             cCeEEEECC-CHHHHHHHHHHHh-CCCEEE-EEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHh------
Confidence            379999995 9999999998874 578854 56653210 1111110110  00     011 35678888774      


Q ss_pred             CccEEEEccCchhHHHHHHHH---HHcCCcEEEe
Q 031341          106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVY  136 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~a---l~~g~~vVig  136 (161)
                      ++|+||.++.+....+.+...   ++.+..+|..
T Consensus        75 ~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           75 DADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             cCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence            799999777666655555443   3446666665

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=97.40  E-value=0.0019  Score=52.19  Aligned_cols=35  Identities=11%  Similarity=0.210  Sum_probs=28.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd   68 (161)
                      .++||.|.|++|.+|+.+++.+.+. .+.++++...
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~   58 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDA   58 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEec
Confidence            4589999999999999999999865 3477776654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.38  E-value=0.0024  Score=51.83  Aligned_cols=90  Identities=14%  Similarity=0.202  Sum_probs=56.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .+.||+|+|++|.||+.+++.+. ..++++. ++|++..                   .+.++++.      .+|+||.+
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~-~~G~~V~-~~~~~~~-------------------~~~~~~~~------~aDvVila   72 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLR-ASGYPIS-ILDREDW-------------------AVAESILA------NADVVIVS   72 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHH-TTTCCEE-EECTTCG-------------------GGHHHHHT------TCSEEEEC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHH-hCCCeEE-EEECCcc-------------------cCHHHHhc------CCCEEEEe
Confidence            34699999944999999999987 4567655 4564321                   14556664      78999977


Q ss_pred             cCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHH
Q 031341          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       114 T~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~L~~~  151 (161)
                      .+|....+.+.....   .+. +|+-.++......+.+.+.
T Consensus        73 vp~~~~~~vl~~l~~~l~~~~-iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           73 VPINLTLETIERLKPYLTENM-LLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTS-EEEECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcCCCc-EEEECCCCCcHHHHHHHHh
Confidence            777666565554332   233 5554555555555555443

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.38  E-value=0.00036  Score=55.21  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=52.4

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |++...||.|.|++|.+|+.+++.+.+ .+.+++++. +..  .|+.            -.+++++++..    .++|+|
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~-r~~--~Dl~------------d~~~~~~~~~~----~~~d~v   67 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKG-KNVEVIPTD-VQD--LDIT------------NVLAVNKFFNE----KKPNVV   67 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTT-SSEEEEEEC-TTT--CCTT------------CHHHHHHHHHH----HCCSEE
T ss_pred             cccccceEEEECCCChHHHHHHHHHHh-CCCeEEecc-Ccc--CCCC------------CHHHHHHHHHh----cCCCEE
Confidence            556679999999999999999999874 578877654 321  1111            01345556641    269999


Q ss_pred             EEccCch------------------hHHHHHHHHHHcCCcEE
Q 031341          111 IDFTDAS------------------TVYDNVKQATAFGMRSV  134 (161)
Q Consensus       111 IDfT~p~------------------~~~~~~~~al~~g~~vV  134 (161)
                      |.+..+.                  .....+..+.++|.++|
T Consensus        68 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv  109 (292)
T 1vl0_A           68 INCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIV  109 (292)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred             EECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            9876321                  12344566777787766

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.38  E-value=0.0005  Score=56.07  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeee-------eCCHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v-------~~dl~~~l~~~~~~~~  106 (161)
                      ++||.|.|++|.+|+.+++.+.+. +.++.++..+.... .....+..+ ...++.+       .+++++++.+    .+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~l-~~~~v~~~~~Dl~d~~~l~~~~~~----~~   83 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPRSPSKAKIFKAL-EDKGAIIVYGLINEQEAMEKILKE----HE   83 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHHHHHHH-HHTTCEEEECCTTCHHHHHHHHHH----TT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECCCCCChhHHHHHHHH-HhCCcEEEEeecCCHHHHHHHHhh----CC
Confidence            468999999999999999999865 68888776643110 111100000 0112221       1234445542    37


Q ss_pred             ccEEEEccCc---hhHHHHHHHHHHcC-CcEEE
Q 031341          107 RAVVIDFTDA---STVYDNVKQATAFG-MRSVV  135 (161)
Q Consensus       107 ~DVVIDfT~p---~~~~~~~~~al~~g-~~vVi  135 (161)
                      +|+||.++.+   ......+..+.+.| +..++
T Consensus        84 ~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           84 IDIVVSTVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CCEEEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            9999987754   34456778888888 76665

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.36  E-value=0.00094  Score=51.68  Aligned_cols=88  Identities=13%  Similarity=0.144  Sum_probs=51.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------eCCHHHHHhcccccCC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-------~~dl~~~l~~~~~~~~  106 (161)
                      .|.+|.|.|++|.+|+.+++.+.+..+.+++++..+...   ..++.    ..++.+       .++++++++      .
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~---~~~~~----~~~~~~~~~Dl~d~~~~~~~~~------~   88 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK---IHKPY----PTNSQIIMGDVLNHAALKQAMQ------G   88 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGG---SCSSC----CTTEEEEECCTTCHHHHHHHHT------T
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhh---hcccc----cCCcEEEEecCCCHHHHHHHhc------C
Confidence            357899999999999999999985543887766653211   11111    112211       123444553      7


Q ss_pred             ccEEEEccCchhH----HHHHHHHHHcCCc-EE
Q 031341          107 RAVVIDFTDASTV----YDNVKQATAFGMR-SV  134 (161)
Q Consensus       107 ~DVVIDfT~p~~~----~~~~~~al~~g~~-vV  134 (161)
                      +|+||....+...    ...+..+.+.|.. +|
T Consensus        89 ~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV  121 (236)
T 3qvo_A           89 QDIVYANLTGEDLDIQANSVIAAMKACDVKRLI  121 (236)
T ss_dssp             CSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEE
Confidence            8999976543322    2344566677754 44

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.36  E-value=0.00061  Score=54.54  Aligned_cols=88  Identities=15%  Similarity=0.179  Sum_probs=55.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ++||.|.|++|.+|+.+++.+.+ .+.++.++..+... .+   +.+.. -..++. .+++++++.      ++|+||.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~-~~---~~~~~~~~~Dl~-~~~~~~~~~------~~d~Vih~   69 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIGN-KA---INDYEYRVSDYT-LEDLINQLN------DVDAVVHL   69 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHTT------TCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeCCCCc-cc---CCceEEEEcccc-HHHHHHhhc------CCCEEEEc
Confidence            47999999999999999999985 57888877654211 11   11110 012333 344556663      79999987


Q ss_pred             cCch--------------hHHHHHHHHHHcCCc-EE
Q 031341          114 TDAS--------------TVYDNVKQATAFGMR-SV  134 (161)
Q Consensus       114 T~p~--------------~~~~~~~~al~~g~~-vV  134 (161)
                      +.+.              .....+..+.+.|+. +|
T Consensus        70 a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v  105 (311)
T 3m2p_A           70 AATRGSQGKISEFHDNEILTQNLYDACYENNISNIV  105 (311)
T ss_dssp             CCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            6321              224556777888876 54

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.36  E-value=0.001  Score=53.10  Aligned_cols=93  Identities=20%  Similarity=0.223  Sum_probs=55.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchhhh----h-cCCCCCCeeee---
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIGMV----C-DMEQPLEIPVM---   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~~~----~-g~~~~~~i~v~---   91 (161)
                      .||.|+|+ |.+|+.+++.|. ..|+.=+.++|++..                |++..+.    + .+.....+..+   
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La-~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CeEEEEee-CHHHHHHHHHHH-HcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            68999995 999999999997 446644557885421                1111111    1 00001122211   


Q ss_pred             -C--CHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341           92 -S--DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (161)
Q Consensus        92 -~--dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig  136 (161)
                       +  ++++.+.      ++|+|||++..... ......|.+.|+|+|.+
T Consensus       110 ~~~~~~~~~~~------~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~  152 (249)
T 1jw9_B          110 LDDAELAALIA------EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSG  152 (249)
T ss_dssp             CCHHHHHHHHH------TSSEEEECCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCHhHHHHHHh------CCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEe
Confidence             1  2344554      78999998844333 45557788899999865

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=97.33  E-value=0.0036  Score=53.65  Aligned_cols=114  Identities=14%  Similarity=0.150  Sum_probs=71.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe-cCCCC---cchhhhh----cCCC-----CCCeeee---CCHHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID-SHSVG---EDIGMVC----DMEQ-----PLEIPVM---SDLTMV   97 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd-~~~~g---~~~~~~~----g~~~-----~~~i~v~---~dl~~~   97 (161)
                      |-||.|.|+||.+|...++.+.++|+ ++++++.. .....   +.+.++-    .+..     ..++.++   +.+.++
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~l~~~  100 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRL  100 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTHHHHH
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHHHHHH
Confidence            67899999999999999999999876 99999998 43210   1111110    0000     0011122   113333


Q ss_pred             HhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHH----HHHHHHhhhcC
Q 031341           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKAS  156 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~----~~L~~~A~~~~  156 (161)
                      ..    ..++|+|+-.-.=.....-...|+++|+.+-..    +.|.+    +.+.+++++.+
T Consensus       101 a~----~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLA----NKEsLV~aG~lv~~~a~~~~  155 (398)
T 2y1e_A          101 VE----QTEADVVLNALVGALGLRPTLAALKTGARLALA----NKESLVAGGSLVLRAARPGQ  155 (398)
T ss_dssp             HH----HSCCSEEEECCCSGGGHHHHHHHHHHTCEEEEC----CHHHHHHHTHHHHHHCCTTC
T ss_pred             hc----CCCCCEEEEeCcCHHHHHHHHHHHHCCCceEEc----ccchheecHHHHHHHHHHcC
Confidence            33    256899996556666677788899999999884    44443    24566666655

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.33  E-value=0.00053  Score=55.08  Aligned_cols=95  Identities=17%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc---chhhhhcCCCCCCeee----eCC---HHHHHhccc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---DIGMVCDMEQPLEIPV----MSD---LTMVLGSIS  102 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~---~~~~~~g~~~~~~i~v----~~d---l~~~l~~~~  102 (161)
                      +.|++|.|.|++|.+|+.+++.+.+ .+.++.++..+...+.   ....+..+. ..++.+    ++|   +++++.   
T Consensus         2 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~l~~~~-~~~v~~v~~D~~d~~~l~~a~~---   76 (321)
T 3c1o_A            2 SHMEKIIIYGGTGYIGKFMVRASLS-FSHPTFIYARPLTPDSTPSSVQLREEFR-SMGVTIIEGEMEEHEKMVSVLK---   76 (321)
T ss_dssp             --CCCEEEETTTSTTHHHHHHHHHH-TTCCEEEEECCCCTTCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHT---
T ss_pred             CcccEEEEEcCCchhHHHHHHHHHh-CCCcEEEEECCcccccChHHHHHHHHhh-cCCcEEEEecCCCHHHHHHHHc---
Confidence            3467899999999999999999986 4788887665420110   110000000 112211    123   445553   


Q ss_pred             ccCCccEEEEccCc---hhHHHHHHHHHHcC-CcEEE
Q 031341          103 QSKARAVVIDFTDA---STVYDNVKQATAFG-MRSVV  135 (161)
Q Consensus       103 ~~~~~DVVIDfT~p---~~~~~~~~~al~~g-~~vVi  135 (161)
                         ++|+||.++.+   ......+..+.+.| +.-++
T Consensus        77 ---~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           77 ---QVDIVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             ---TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             ---CCCEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence               79999987754   34456677888888 65444

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.33  E-value=0.0013  Score=55.19  Aligned_cols=106  Identities=14%  Similarity=0.094  Sum_probs=62.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +.||+|+| .|.||..+++.+.+ .+.++. ++|++..  ......    +.|+..++++++++..-  ...+|+||.++
T Consensus         8 ~~kIgIIG-~G~mG~slA~~L~~-~G~~V~-~~dr~~~--~~~~a~----~~G~~~~~~~~e~~~~a--~~~aDlVilav   76 (341)
T 3ktd_A            8 SRPVCILG-LGLIGGSLLRDLHA-ANHSVF-GYNRSRS--GAKSAV----DEGFDVSADLEATLQRA--AAEDALIVLAV   76 (341)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSCHH--HHHHHH----HTTCCEESCHHHHHHHH--HHTTCEEEECS
T ss_pred             CCEEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEeCCHH--HHHHHH----HcCCeeeCCHHHHHHhc--ccCCCEEEEeC
Confidence            36899999 69999999999874 467755 6675421  111111    34556678888876410  01479999777


Q ss_pred             CchhHHHHHHHHH--HcCCcEEEeCCCCCHHHHHHHHHHh
Q 031341          115 DASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFC  152 (161)
Q Consensus       115 ~p~~~~~~~~~al--~~g~~vVigttg~~~e~~~~L~~~A  152 (161)
                      +|....+.+....  ..+ .+|+-.++...+..+.+.+..
T Consensus        77 P~~~~~~vl~~l~~~~~~-~iv~Dv~Svk~~i~~~~~~~~  115 (341)
T 3ktd_A           77 PMTAIDSLLDAVHTHAPN-NGFTDVVSVKTAVYDAVKARN  115 (341)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CCEEECCSCSHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHccCCC-CEEEEcCCCChHHHHHHHHhC
Confidence            6665555444332  234 344434445455555555543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.31  E-value=0.00085  Score=54.02  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +|||.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   46 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRA-AGHDLVLIHRP   46 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEecC
Confidence            46999999999999999999985 57898877654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.31  E-value=0.00049  Score=55.05  Aligned_cols=113  Identities=16%  Similarity=0.220  Sum_probs=57.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC--C-----CCCeeeeCCHHHHHhccccc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--Q-----PLEIPVMSDLTMVLGSISQS  104 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~--g~~--~-----~~~i~v~~dl~~~l~~~~~~  104 (161)
                      .|+||+|+|+ |.||+.++..+.+ .+.++. +++++.  .....+.  |..  .     ...+.++ +.+++...+   
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~-~g~~V~-~~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~---   72 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQ-GGNDVT-LIDQWP--AHIEAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQN---   72 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHHCEEEEETTEEEEECCCEE-CGGGCCTTS---
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHHhCCEEEEeCCCeeEecceee-cchhhcccC---
Confidence            3689999995 9999999999874 567765 456431  1111111  110  0     0011112 222322100   


Q ss_pred             CCccEEEEccCchhHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al---~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .++|+||-++.+....+.+....   ..+..+|.-++|++.  .+.|.+...+.++
T Consensus        73 ~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~--~~~l~~~~~~~~v  126 (316)
T 2ew2_A           73 EQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH--EDVLEKYVPKENI  126 (316)
T ss_dssp             CCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT--HHHHTTTSCGGGE
T ss_pred             CCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCc--HHHHHHHcCCccE
Confidence            27899996666655444444332   335566665667753  2334444333333

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.30  E-value=0.00045  Score=52.10  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~-~g~~V~~~~R~   33 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKN-RGHEVTAIVRN   33 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             CeEEEEcCCchhHHHHHHHHHh-CCCEEEEEEcC
Confidence            5899999999999999999985 47898877654

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=97.30  E-value=0.0002  Score=60.81  Aligned_cols=96  Identities=23%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHH----HHhcCCcEEEEEEecC--------------CCCcchhhh--------------hcC
Q 031341           35 NIKVIINGAVKEIGRAAVIA----VTKARGMEVAGAIDSH--------------SVGEDIGMV--------------CDM   82 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~----l~~~~~~eLvavvd~~--------------~~g~~~~~~--------------~g~   82 (161)
                      ++||+|.| .||+||.+.|.    +.+.+++|+|++-|+-              .-|+--+++              +-+
T Consensus         2 ~~kv~ING-FGrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l~i   80 (359)
T 3ids_C            2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV   80 (359)
T ss_dssp             CEEEEEEC-TTHHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEEEE
T ss_pred             ceEEEEEC-CChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEEEE
Confidence            48999999 69999999998    6667899999999831              001100000              000


Q ss_pred             CCCCCeeeeC---CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           83 EQPLEIPVMS---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        83 ~~~~~i~v~~---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      . ...+.++.   +++++-..   +.++|+|++.|--....+.+...++.|.. ||+
T Consensus        81 n-Gk~I~v~~~e~dp~~i~w~---~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViI  133 (359)
T 3ids_C           81 N-GHRILCVKAQRNPADLPWG---KLGVEYVIESTGLFTAKAAAEGHLRGGARKVVI  133 (359)
T ss_dssp             T-TEEEEECCCCSSTTTSCHH---HHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEE
T ss_pred             C-CEEEEEEEccCCcccCCcc---ccCccEEEEeccccCCHHHHHHHHHcCCCEEEE
Confidence            0 11244443   44433110   13799999888777778888888999965 444

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.28  E-value=0.00048  Score=60.97  Aligned_cols=110  Identities=12%  Similarity=0.053  Sum_probs=66.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eCCHHHHHhcccccCC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKA  106 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-----~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~dl~~~l~~~~~~~~  106 (161)
                      .||+|+| +|.||..+++.+.+.     .+++++...++.........      ..|+..    ..++++++.      .
T Consensus        55 KkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~------e~G~~v~d~ta~s~aEAa~------~  121 (525)
T 3fr7_A           55 KQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR------AAGFTEESGTLGDIWETVS------G  121 (525)
T ss_dssp             SEEEEEC-CTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH------HTTCCTTTTCEEEHHHHHH------H
T ss_pred             CEEEEEe-EhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH------HCCCEEecCCCCCHHHHHh------c
Confidence            6999999 699999999999865     37887755554221122222      223333    257888886      6


Q ss_pred             ccEEEEccCchhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHH-HHHHhhhcCeee
Q 031341          107 RAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLETVSA-LSAFCDKASMVS  159 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~---~~al~~g~~vVigttg~~~e~~~~-L~~~A~~~~Vv~  159 (161)
                      +|+||-..+|....+.+   ...++.|.- |+=..|++...++. ...+-+..+|+.
T Consensus       122 ADVVILaVP~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I~~le~~~i~~p~dv~VVr  177 (525)
T 3fr7_A          122 SDLVLLLISDAAQADNYEKIFSHMKPNSI-LGLSHGFLLGHLQSAGLDFPKNISVIA  177 (525)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCE-EEESSSHHHHHHHHTTCCCCTTSEEEE
T ss_pred             CCEEEECCChHHHHHHHHHHHHhcCCCCe-EEEeCCCCHHHHhhhcccCCCCCcEEE
Confidence            99999777665554433   334445554 55567876554332 223344455553

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.27  E-value=0.00036  Score=58.02  Aligned_cols=75  Identities=20%  Similarity=0.142  Sum_probs=49.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+||+|+| +|.||+.+++.+.. .+++++ ++++...  ...+.+   .+.|+.++ ++++++.      .+|+||.++
T Consensus        16 ~~~I~IIG-~G~mG~alA~~L~~-~G~~V~-~~~~~~~--~~~~~a---~~~G~~~~-~~~e~~~------~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIG-YGSQGHAHACNLKD-SGVDVT-VGLRSGS--ATVAKA---EAHGLKVA-DVKTAVA------AADVVMILT   80 (338)
T ss_dssp             TSCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECCTTC--HHHHHH---HHTTCEEE-CHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEC-chHHHHHHHHHHHH-CcCEEE-EEECChH--HHHHHH---HHCCCEEc-cHHHHHh------cCCEEEEeC
Confidence            47899999 59999999999874 567765 5564321  111111   12355555 8888875      799999777


Q ss_pred             CchhHHHHHH
Q 031341          115 DASTVYDNVK  124 (161)
Q Consensus       115 ~p~~~~~~~~  124 (161)
                      +|....+.+.
T Consensus        81 p~~~~~~v~~   90 (338)
T 1np3_A           81 PDEFQGRLYK   90 (338)
T ss_dssp             CHHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            6666655554

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.27  E-value=0.00076  Score=51.93  Aligned_cols=88  Identities=13%  Similarity=0.240  Sum_probs=54.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-C-CCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-E-QPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~--g~-~-~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      .+||.|.|++|.+|+.+++.+.+ .+.+++++..+..   +..++.  +. . -..++.  +++.+++.      ++|+|
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~-~G~~V~~~~R~~~---~~~~~~~~~~~~~~~~Dl~--~~~~~~~~------~~D~v   88 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKN-KGHEPVAMVRNEE---QGPELRERGASDIVVANLE--EDFSHAFA------SIDAV   88 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSGG---GHHHHHHTTCSEEEECCTT--SCCGGGGT------TCSEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHh-CCCeEEEEECChH---HHHHHHhCCCceEEEcccH--HHHHHHHc------CCCEE
Confidence            37999999999999999999985 5889887765421   111111  11 0 011222  45555553      79999


Q ss_pred             EEccCch--------------hHHHHHHHHHHcCC-cEE
Q 031341          111 IDFTDAS--------------TVYDNVKQATAFGM-RSV  134 (161)
Q Consensus       111 IDfT~p~--------------~~~~~~~~al~~g~-~vV  134 (161)
                      |....+.              .....++.+.++|. ++|
T Consensus        89 i~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv  127 (236)
T 3e8x_A           89 VFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFI  127 (236)
T ss_dssp             EECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEE
T ss_pred             EECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEE
Confidence            9876321              13345567777775 444

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=97.27  E-value=8.6e-05  Score=63.02  Aligned_cols=100  Identities=20%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------C------CCc------chhhhhcCCCCCCeeeeC-
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------S------VGE------DIGMVCDMEQPLEIPVMS-   92 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------~------~g~------~~~~~~g~~~~~~i~v~~-   92 (161)
                      ..++||+|.|+ |++||.+.+.+.+. ++++|++-|..       .      -|+      ..+..+-+. ...+.++. 
T Consensus        19 ~~~~kVaInGf-GrIGr~vlr~l~e~-~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~-Gk~I~v~~~   95 (356)
T 3hja_A           19 PGSMKLAINGF-GRIGRNVFKIAFER-GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVD-GREIKIIAE   95 (356)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEECC
T ss_pred             CCCeEEEEECC-CHHHHHHHHHHHHC-CCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEEC-CEEEEEEEc
Confidence            44599999996 99999999999877 89999987632       0      000      000001010 12344543 


Q ss_pred             -CHHHHHhcccccCCccEEEEccCchhH----HHHHHHHHH-cCCc-EEEeCC
Q 031341           93 -DLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATA-FGMR-SVVYVP  138 (161)
Q Consensus        93 -dl~~~l~~~~~~~~~DVVIDfT~p~~~----~~~~~~al~-~g~~-vVigtt  138 (161)
                       |++++-..   +.++|+|++.|-....    .+.+...++ .|.. ||+-.+
T Consensus        96 ~dp~~i~w~---~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsap  145 (356)
T 3hja_A           96 RDPKNLPWA---KLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVP  145 (356)
T ss_dssp             SSGGGCCHH---HHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSC
T ss_pred             CChhhCCcc---ccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCC
Confidence             45443210   1379999987633333    667777788 7854 555433

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.26  E-value=0.0016  Score=53.49  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhhh----------cCCCCCCeeeeCCH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMVC----------DMEQPLEIPVMSDL   94 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-------~eLvavvd~~~~--g~-~~~~~~----------g~~~~~~i~v~~dl   94 (161)
                      ++||+|+| .|.||..++..+.+. +       .++ -+++++..  ++ ....+.          +..-..++..++|+
T Consensus         8 ~mkI~iIG-~G~mG~~~a~~l~~~-g~~~~~~~~~V-~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVG-SGNWGSAIAKIVGGN-AAQLAQFDPRV-TMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHH-HHHCTTEEEEE-EEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHhc-CCcccCCCCeE-EEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCH
Confidence            37999999 599999999998754 4       554 45664321  00 111110          10001245667888


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCC
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQ  141 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~a---l~~g~~vVigttg~~  141 (161)
                      ++++.      ++|+||.++.+....+.+...   +..+..+|.-++|++
T Consensus        85 ~~~~~------~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           85 VQAAE------DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHT------TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHc------CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            88774      799999666555444444433   233555666566765

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.24  E-value=0.0023  Score=55.74  Aligned_cols=71  Identities=13%  Similarity=0.180  Sum_probs=45.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhh---------cCC------CCCCeeeeCCHHHH
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVC---------DME------QPLEIPVMSDLTMV   97 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~---------g~~------~~~~i~v~~dl~~~   97 (161)
                      .|+||+|+| +|.||..++..+.+. ++.++++ +|++.  ..+..+.         +..      ...++.+++|++++
T Consensus         8 ~~mkI~VIG-~G~vG~~~A~~La~~g~g~~V~~-~D~~~--~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~   83 (481)
T 2o3j_A            8 KVSKVVCVG-AGYVGGPTCAMIAHKCPHITVTV-VDMNT--AKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKA   83 (481)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHH
Confidence            458999999 599999999999876 3788775 56421  0111110         000      01235667888777


Q ss_pred             HhcccccCCccEEEEcc
Q 031341           98 LGSISQSKARAVVIDFT  114 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT  114 (161)
                      +.      ++|+||.+.
T Consensus        84 ~~------~aDvvii~V   94 (481)
T 2o3j_A           84 IA------EADLIFISV   94 (481)
T ss_dssp             HH------HCSEEEECC
T ss_pred             hh------cCCEEEEec
Confidence            75      689999663

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.23  E-value=0.00081  Score=51.52  Aligned_cols=35  Identities=14%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd   68 (161)
                      .+.+|.|.|++|.+|+.+++.+.+.. +.+++++..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r   38 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   38 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            45789999999999999999999775 899887655

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.23  E-value=0.0015  Score=50.50  Aligned_cols=74  Identities=18%  Similarity=0.138  Sum_probs=47.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .++||+|+| .|.||+.+++.+. ..+.++. ++|+...                        .+      .++|+||.+
T Consensus        18 ~~~~I~iiG-~G~mG~~la~~l~-~~g~~V~-~~~~~~~------------------------~~------~~aD~vi~a   64 (209)
T 2raf_A           18 QGMEITIFG-KGNMGQAIGHNFE-IAGHEVT-YYGSKDQ------------------------AT------TLGEIVIMA   64 (209)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECTTCC------------------------CS------SCCSEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEcCCHH------------------------Hh------ccCCEEEEc
Confidence            357999999 5999999999987 4567765 4554320                        12      368998866


Q ss_pred             cCchhHHHHHH---HHHHcCCcEEEeCCCCC
Q 031341          114 TDASTVYDNVK---QATAFGMRSVVYVPHIQ  141 (161)
Q Consensus       114 T~p~~~~~~~~---~al~~g~~vVigttg~~  141 (161)
                      ..+....+.+.   ..++ +..+|.-++|++
T Consensus        65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           65 VPYPALAALAKQYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             SCHHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred             CCcHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence            65544444333   3344 666666566665

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.23  E-value=0.0021  Score=53.66  Aligned_cols=85  Identities=11%  Similarity=-0.003  Sum_probs=55.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..+|+|+| +|+||+.+++.+. .-|+++. ++|+....           ..++..+.++++++.      .+|+|+...
T Consensus       164 g~~vgIIG-~G~iG~~vA~~l~-~~G~~V~-~~dr~~~~-----------~~g~~~~~~l~ell~------~aDvVil~v  223 (333)
T 3ba1_A          164 GKRVGIIG-LGRIGLAVAERAE-AFDCPIS-YFSRSKKP-----------NTNYTYYGSVVELAS------NSDILVVAC  223 (333)
T ss_dssp             TCCEEEEC-CSHHHHHHHHHHH-TTTCCEE-EECSSCCT-----------TCCSEEESCHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EECCCchh-----------ccCceecCCHHHHHh------cCCEEEEec
Confidence            36899999 6999999999987 5678865 56654211           113345678999886      799999666


Q ss_pred             Cchh-HH----HHHHHHHHcCCcEEEeCCC
Q 031341          115 DAST-VY----DNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~-~~----~~~~~al~~g~~vVigttg  139 (161)
                      ++.. ..    +.....++.|.-+|-...|
T Consensus       224 P~~~~t~~li~~~~l~~mk~gailIn~srG  253 (333)
T 3ba1_A          224 PLTPETTHIINREVIDALGPKGVLINIGRG  253 (333)
T ss_dssp             CCCGGGTTCBCHHHHHHHCTTCEEEECSCG
T ss_pred             CCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence            5432 11    2233456667655544444

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.22  E-value=0.00066  Score=53.29  Aligned_cols=91  Identities=12%  Similarity=0.189  Sum_probs=51.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ||.|.|++|.+|+.+++.+.+. ++.+++++..+......... .+.. -..++.-.+++++++.      ++|+||.++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~------~~d~vi~~a   73 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA-QGITVRQADYGDEAALTSALQ------GVEKLLLIS   73 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH-TTCEEEECCTTCHHHHHHHTT------TCSEEEECC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc-CCCeEEEcCCCCHHHHHHHHh------CCCEEEEeC
Confidence            5899999999999999999865 48998877653221111100 0000 0001111122344453      789999876


Q ss_pred             Cc------hhHHHHHHHHHHcCC-cEE
Q 031341          115 DA------STVYDNVKQATAFGM-RSV  134 (161)
Q Consensus       115 ~p------~~~~~~~~~al~~g~-~vV  134 (161)
                      .+      ......+..+.+.|+ ++|
T Consensus        74 ~~~~~~~~~~~~~l~~a~~~~~~~~~v  100 (286)
T 2zcu_A           74 SSEVGQRAPQHRNVINAAKAAGVKFIA  100 (286)
T ss_dssp             --------CHHHHHHHHHHHHTCCEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHcCCCEEE
Confidence            43      233455567777785 444

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.21  E-value=0.00092  Score=56.00  Aligned_cols=68  Identities=12%  Similarity=0.043  Sum_probs=45.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+...-++++. ++|+.....+...      +.++...+++++++.      .+|+|+...+
T Consensus       164 ~~vgIIG-~G~IG~~vA~~l~~~~G~~V~-~~d~~~~~~~~~~------~~g~~~~~~l~ell~------~aDvVil~vp  229 (348)
T 2w2k_A          164 HVLGAVG-LGAIQKEIARKAVHGLGMKLV-YYDVAPADAETEK------ALGAERVDSLEELAR------RSDCVSVSVP  229 (348)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHHH------HCSEEEECCC
T ss_pred             CEEEEEE-ECHHHHHHHHHHHHhcCCEEE-EECCCCcchhhHh------hcCcEEeCCHHHHhc------cCCEEEEeCC
Confidence            6899999 699999999988635578865 5675432111111      124444468999886      6999997665


Q ss_pred             ch
Q 031341          116 AS  117 (161)
Q Consensus       116 p~  117 (161)
                      +.
T Consensus       230 ~~  231 (348)
T 2w2k_A          230 YM  231 (348)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=97.21  E-value=0.0048  Score=52.37  Aligned_cols=69  Identities=17%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC------------CCCCeeeeCCHHHHHhcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME------------QPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~--g~~------------~~~~i~v~~dl~~~l~~~  101 (161)
                      |||+|+| +|.||..++..+.+  +.++++ +|++.  ..+..+.  +..            ....+..++++++++.  
T Consensus         1 MkI~VIG-~G~vG~~~A~~La~--G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--   72 (402)
T 1dlj_A            1 MKIAVAG-SGYVGLSLGVLLSL--QNEVTI-VDILP--SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--   72 (402)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--
T ss_pred             CEEEEEC-CCHHHHHHHHHHhC--CCEEEE-EECCH--HHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--
Confidence            5899999 59999999999875  788664 56431  1111110  000            0113456678877775  


Q ss_pred             cccCCccEEEEccCc
Q 031341          102 SQSKARAVVIDFTDA  116 (161)
Q Consensus       102 ~~~~~~DVVIDfT~p  116 (161)
                          ++|++|.++.+
T Consensus        73 ----~aDvviiavpt   83 (402)
T 1dlj_A           73 ----EAELVIIATPT   83 (402)
T ss_dssp             ----HCSEEEECCCC
T ss_pred             ----CCCEEEEecCC
Confidence                68999966643

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.20  E-value=0.001  Score=52.89  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC---cchhhhhcCCCCCCeee----eCC---HHHHHhccccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQS  104 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g---~~~~~~~g~~~~~~i~v----~~d---l~~~l~~~~~~  104 (161)
                      |.+|.|.|++|.+|+.+++.+.+. +.++.++..+....   .....+..+ ...++.+    ++|   +.+++.     
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~l~~~~~-----   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESF-KASGANIVHGSIDDHASLVEAVK-----   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHH-HTTTCEEECCCTTCHHHHHHHHH-----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEEECCcccccCHHHHHHHHHH-HhCCCEEEEeccCCHHHHHHHHc-----
Confidence            578999999999999999999854 68877655432110   001000000 0123322    123   444554     


Q ss_pred             CCccEEEEccCch---hHHHHHHHHHHcC-CcEEE
Q 031341          105 KARAVVIDFTDAS---TVYDNVKQATAFG-MRSVV  135 (161)
Q Consensus       105 ~~~DVVIDfT~p~---~~~~~~~~al~~g-~~vVi  135 (161)
                       ++|+||.++.+.   .....+..+.++| +.-++
T Consensus        77 -~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           77 -NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             -TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             -CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence             799999877542   3456667888888 65554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.20  E-value=0.00053  Score=54.10  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++....   .|+            .-.+++++++..    .++|+||.++.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~---~D~------------~d~~~~~~~~~~----~~~d~vi~~a~   65 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNP-EEYDIYPFDKKL---LDI------------TNISQVQQVVQE----IRPHIIIHCAA   65 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCT-TTEEEEEECTTT---SCT------------TCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHh-CCCEEEEecccc---cCC------------CCHHHHHHHHHh----cCCCEEEECCc
Confidence            5899999999999999999874 588877665421   111            112345566642    36999998763


Q ss_pred             chh------------------HHHHHHHHHHcCCcEE
Q 031341          116 AST------------------VYDNVKQATAFGMRSV  134 (161)
Q Consensus       116 p~~------------------~~~~~~~al~~g~~vV  134 (161)
                      +..                  ....+..+.++|.++|
T Consensus        66 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v  102 (287)
T 3sc6_A           66 YTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLV  102 (287)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred             ccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            211                  2345677788888766

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.20  E-value=0.0013  Score=53.17  Aligned_cols=88  Identities=20%  Similarity=0.199  Sum_probs=52.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .+++|.|.|++|.+|+.+++.+.+ .+.+++++..+.. ..++. +.    ..++.-..++++++.      ++|+||.+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~-~~~~~-~~----~~Dl~d~~~~~~~~~------~~d~vih~   84 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRT-QGRTVRGFDLRPS-GTGGE-EV----VGSLEDGQALSDAIM------GVSAVLHL   84 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHH-TTCCEEEEESSCC-SSCCS-EE----ESCTTCHHHHHHHHT------TCSEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHh-CCCEEEEEeCCCC-CCCcc-EE----ecCcCCHHHHHHHHh------CCCEEEEC
Confidence            458999999999999999999985 5788887755321 11110 00    112211233455553      79999986


Q ss_pred             cCch----------------hHHHHHHHHHHcCC-cEE
Q 031341          114 TDAS----------------TVYDNVKQATAFGM-RSV  134 (161)
Q Consensus       114 T~p~----------------~~~~~~~~al~~g~-~vV  134 (161)
                      ..+.                .....+..+.++|+ ++|
T Consensus        85 A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V  122 (347)
T 4id9_A           85 GAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFV  122 (347)
T ss_dssp             CCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             CcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            5321                12345667778886 454

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.19  E-value=0.00074  Score=54.81  Aligned_cols=94  Identities=17%  Similarity=0.148  Sum_probs=54.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhh--cCCCC-----CCeeeeC--CHHHHHhccccc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVC--DMEQP-----LEIPVMS--DLTMVLGSISQS  104 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~--~~~g~~~~~~~--g~~~~-----~~i~v~~--dl~~~l~~~~~~  104 (161)
                      |||+|+|+ |.||+.++..+.+ .+.++. ++++  +.  .....+.  +....     ..+.+++  ++++++.     
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~-~g~~V~-~~~r~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----   70 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVD-NGNEVR-IWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE-----   70 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHH-HCCEEE-EECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT-----
T ss_pred             CEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEEccCCH--HHHHHHHHhCcCcccCccccceEEecHHhHHHHHh-----
Confidence            58999995 9999999999874 467765 4554  31  1111111  10000     1124556  7777764     


Q ss_pred             CCccEEEEccCchhHHHHHHHH--HHcCCcEEEeCCCC
Q 031341          105 KARAVVIDFTDASTVYDNVKQA--TAFGMRSVVYVPHI  140 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~a--l~~g~~vVigttg~  140 (161)
                       ++|+||-++.+....+.+...  +..+..+|.-+.|+
T Consensus        71 -~~D~vi~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           71 -NAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             -TCSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             -cCCEEEEcCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence             799999666666554444332  33355455444466

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.18  E-value=0.0013  Score=52.36  Aligned_cols=93  Identities=20%  Similarity=0.251  Sum_probs=55.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCeee----eCC---HHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g--~~~~~~~g~~~~~~i~v----~~d---l~~~l~~~~~~~  105 (161)
                      |++|.|.|++|.+|+.+++.+.+. +.++.++..+....  .....+..+. ..++.+    ++|   +++++.      
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~------   75 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALK------   75 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHT------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHh------
Confidence            578999999999999999999854 78887665532110  0111100000 112222    123   445553      


Q ss_pred             CccEEEEccCch-------hHHHHHHHHHHcC-CcEEE
Q 031341          106 ARAVVIDFTDAS-------TVYDNVKQATAFG-MRSVV  135 (161)
Q Consensus       106 ~~DVVIDfT~p~-------~~~~~~~~al~~g-~~vVi  135 (161)
                      ++|+||.++.+.       .....+..+.+.| +.-++
T Consensus        76 ~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           76 QVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             TCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            799999876432       3455667888888 65444

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.18  E-value=0.0012  Score=55.57  Aligned_cols=66  Identities=20%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -.+|+|+| +|+||+.+++.+. .-|+++. ++|+... .....      ..|+..+.++++++.      ..|+|+...
T Consensus       168 g~tvGIIG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~~-~~~~~------~~g~~~~~~l~ell~------~aDvV~l~~  231 (347)
T 1mx3_A          168 GETLGIIG-LGRVGQAVALRAK-AFGFNVL-FYDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTLHC  231 (347)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-ECHHHHHHHHHHH-HCCCEEE-EECCCcc-hhhHh------hcCCeecCCHHHHHh------cCCEEEEcC
Confidence            36899999 6999999999987 5689876 4675432 11111      224444568999886      699999666


Q ss_pred             Cc
Q 031341          115 DA  116 (161)
Q Consensus       115 ~p  116 (161)
                      +.
T Consensus       232 P~  233 (347)
T 1mx3_A          232 GL  233 (347)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.16  E-value=0.0008  Score=52.93  Aligned_cols=86  Identities=12%  Similarity=0.193  Sum_probs=53.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCee-ee---CC---HHHHHhcccccCCc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SD---LTMVLGSISQSKAR  107 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~---~d---l~~~l~~~~~~~~~  107 (161)
                      ++|.|.|++|.+|+.+++.+.+. ++.+++++..+...   ...+..    .++. +.   .|   +++++.      ++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~---~~~l~~----~~~~~~~~D~~d~~~l~~~~~------~~   67 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK---ASTLAD----QGVEVRHGDYNQPESLQKAFA------GV   67 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT---THHHHH----TTCEEEECCTTCHHHHHHHTT------TC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHH---HhHHhh----cCCeEEEeccCCHHHHHHHHh------cC
Confidence            37999999999999999999865 48998877653221   111110    1111 11   23   344443      79


Q ss_pred             cEEEEccCch--------hHHHHHHHHHHcCC-cEE
Q 031341          108 AVVIDFTDAS--------TVYDNVKQATAFGM-RSV  134 (161)
Q Consensus       108 DVVIDfT~p~--------~~~~~~~~al~~g~-~vV  134 (161)
                      |+||.++.+.        .....+..+.++|+ ++|
T Consensus        68 d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  103 (287)
T 2jl1_A           68 SKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIA  103 (287)
T ss_dssp             SEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEE
Confidence            9999877431        22345567777886 454

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.15  E-value=0.001  Score=55.42  Aligned_cols=84  Identities=18%  Similarity=0.157  Sum_probs=52.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+... .....      ..++.. .++++++.      .+|+|+...
T Consensus       146 g~~vgIIG-~G~iG~~vA~~l~-~~G~~V~-~~d~~~~-~~~~~------~~g~~~-~~l~e~l~------~aDiVil~v  208 (333)
T 2d0i_A          146 GKKVGILG-MGAIGKAIARRLI-PFGVKLY-YWSRHRK-VNVEK------ELKARY-MDIDELLE------KSDIVILAL  208 (333)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGTCEEE-EECSSCC-HHHHH------HHTEEE-CCHHHHHH------HCSEEEECC
T ss_pred             cCEEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-hhhhh------hcCcee-cCHHHHHh------hCCEEEEcC
Confidence            37899999 6999999999986 5578865 5675432 11111      224433 48888886      699999766


Q ss_pred             Cch-hH----HHHHHHHHHcCCcEEEeC
Q 031341          115 DAS-TV----YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       115 ~p~-~~----~~~~~~al~~g~~vVigt  137 (161)
                      ++. ..    .+.....++.|  +++-+
T Consensus       209 p~~~~t~~~i~~~~~~~mk~g--ilin~  234 (333)
T 2d0i_A          209 PLTRDTYHIINEERVKKLEGK--YLVNI  234 (333)
T ss_dssp             CCCTTTTTSBCHHHHHHTBTC--EEEEC
T ss_pred             CCChHHHHHhCHHHHhhCCCC--EEEEC
Confidence            543 11    12334456667  44444

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.15  E-value=0.0023  Score=51.36  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=29.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +||.|.|++|.+|+.+++.+.+.++.+++++..+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   34 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4899999999999999999987778998876653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.14  E-value=0.0024  Score=50.47  Aligned_cols=94  Identities=18%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC----eee-eCCHHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPV-MSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~----i~v-~~dl~~~l~~~~~~~~~DVV  110 (161)
                      |||+|+|+ |.||..++..+.+ .+.++.. ++++..  ....+... ...+    ..+ .++. +.+.      ++|+|
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~r~~~--~~~~l~~~-~~~~~~~~~~~~~~~~-~~~~------~~d~v   67 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCK-QGHEVQG-WLRVPQ--PYCSVNLV-ETDGSIFNESLTANDP-DFLA------TSDLL   67 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC--SEEEEEEE-CTTSCEEEEEEEESCH-HHHH------TCSEE
T ss_pred             CeEEEECc-CHHHHHHHHHHHh-CCCCEEE-EEcCcc--ceeeEEEE-cCCCceeeeeeeecCc-cccC------CCCEE
Confidence            58999995 9999999999874 5677654 564321  11111100 0011    111 3444 4443      69999


Q ss_pred             EEccCchhHHHHHHHHH---HcCCcEEEeCCCCCH
Q 031341          111 IDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL  142 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al---~~g~~vVigttg~~~  142 (161)
                      |-++.+....+.+....   ..+..+|.-+.|++.
T Consensus        68 i~~v~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           68 LVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             EECSCGGGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             EEEecHHhHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            96666665544444332   335667766777743

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.14  E-value=0.0043  Score=53.06  Aligned_cols=68  Identities=19%  Similarity=0.321  Sum_probs=43.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc----CCCC-----------CC-eeeeCCHHHHHh
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQP-----------LE-IPVMSDLTMVLG   99 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g----~~~~-----------~~-i~v~~dl~~~l~   99 (161)
                      |||+|+| +|.||..++..+.+ .+.+++ ++|++.  ..+..+..    +..+           .+ +..++|+++++.
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~-~G~~V~-~~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSA-RGHEVI-GVDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            5899999 59999999999874 578865 556431  11111110    0000           22 667789988775


Q ss_pred             cccccCCccEEEEcc
Q 031341          100 SISQSKARAVVIDFT  114 (161)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (161)
                            ++|+||.+.
T Consensus        76 ------~aDvviiaV   84 (436)
T 1mv8_A           76 ------DSDVSFICV   84 (436)
T ss_dssp             ------TCSEEEECC
T ss_pred             ------cCCEEEEEc
Confidence                  799999666

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.13  E-value=0.0022  Score=51.97  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=29.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++||.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   58 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLK-LNQVVIGLDNF   58 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCC
Confidence            47999999999999999999985 57898877664

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.13  E-value=0.0015  Score=56.58  Aligned_cols=70  Identities=11%  Similarity=0.139  Sum_probs=45.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhh---------------hhcCCCCCCeeeeCCHHHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGM---------------VCDMEQPLEIPVMSDLTMVL   98 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~---------------~~g~~~~~~i~v~~dl~~~l   98 (161)
                      |+||+|+| +|.||..++..+.+.. +++++ ++|++.  ..+..               +.......++..++|+++++
T Consensus         5 ~mkI~VIG-~G~mG~~lA~~La~~g~G~~V~-~~d~~~--~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~   80 (467)
T 2q3e_A            5 IKKICCIG-AGYVGGPTCSVIAHMCPEIRVT-VVDVNE--SRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAI   80 (467)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHCTTSEEE-EECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHhcCCCCEEE-EEECCH--HHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHH
Confidence            57999999 5999999999998663 78865 566431  11111               11000013566778888887


Q ss_pred             hcccccCCccEEEEcc
Q 031341           99 GSISQSKARAVVIDFT  114 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT  114 (161)
                      .      ++|+||.+.
T Consensus        81 ~------~aDvViiaV   90 (467)
T 2q3e_A           81 K------EADLVFISV   90 (467)
T ss_dssp             H------HCSEEEECC
T ss_pred             h------cCCEEEEEc
Confidence            5      689999664

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=97.11  E-value=0.0073  Score=51.87  Aligned_cols=119  Identities=12%  Similarity=0.069  Sum_probs=71.6

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh----------------hc-C--CCCCC
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV----------------CD-M--EQPLE   87 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g---~~~~~~----------------~g-~--~~~~~   87 (161)
                      ++++|-||.|.|+||.+|...++.+.++|+ +++++........   +.+.++                -. +  . ..+
T Consensus         5 ~~~~~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag~nv~~L~~q~~~f~p~~v~v~d~~~~~~L~~~l~~~-~~~   83 (406)
T 1q0q_A            5 HHSGMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQ-GSR   83 (406)
T ss_dssp             ----CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHT-TCC
T ss_pred             ccCCceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhcC-CCC
Confidence            456788999999999999999999999876 9999999843110   001111                00 0  0 112


Q ss_pred             eeeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHH----HHHHHhhhc
Q 031341           88 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVS----ALSAFCDKA  155 (161)
Q Consensus        88 i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~----~L~~~A~~~  155 (161)
                      +.++...+.+. +++...++|+|+-.-.=.....-...|+++|+.+-..    +.|.+-    .+.+++++.
T Consensus        84 ~~v~~G~~~l~-~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLA----NKEsLV~aG~lv~~~a~~~  150 (406)
T 1q0q_A           84 TEVLSGQQAAC-DMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA----NKESLVTCGRLFMDAVKQS  150 (406)
T ss_dssp             CEEEESHHHHH-HHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC----CHHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCHHHHH-HHhcCCCCCEEEEccccHhHHHHHHHHHHCCCeEEEe----chHHHHhchHHHHHHHHHc
Confidence            33433333321 1122356899995555566677778899999999884    444432    445555554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.11  E-value=0.00095  Score=55.13  Aligned_cols=105  Identities=18%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+... .....      +.|+.. .++++++.      ..|+|+...
T Consensus       142 g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~-~~~~~------~~g~~~-~~l~ell~------~aDvVvl~~  204 (313)
T 2ekl_A          142 GKTIGIVG-FGRIGTKVGIIAN-AMGMKVL-AYDILDI-REKAE------KINAKA-VSLEELLK------NSDVISLHV  204 (313)
T ss_dssp             TCEEEEES-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-HHHHH------HTTCEE-CCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-HCCCEEE-EECCCcc-hhHHH------hcCcee-cCHHHHHh------hCCEEEEec
Confidence            37999999 6999999999987 4578876 5665432 11111      234433 48999886      689999665


Q ss_pred             Cchh-H---H-HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          115 DAST-V---Y-DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       115 ~p~~-~---~-~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +... .   . +.....++.|.-+|--.+|- ..+.+.|.++.++..+
T Consensus       205 P~~~~t~~li~~~~l~~mk~ga~lIn~arg~-~vd~~aL~~aL~~g~i  251 (313)
T 2ekl_A          205 TVSKDAKPIIDYPQFELMKDNVIIVNTSRAV-AVNGKALLDYIKKGKV  251 (313)
T ss_dssp             CCCTTSCCSBCHHHHHHSCTTEEEEESSCGG-GBCHHHHHHHHHTTCE
T ss_pred             cCChHHHHhhCHHHHhcCCCCCEEEECCCCc-ccCHHHHHHHHHcCCC
Confidence            4221 1   1 23334455555444333332 2223455555555443

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=97.10  E-value=0.0021  Score=52.10  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ..+++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   59 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDN   59 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHH-CCCEEEEEeC
Confidence            3468999999999999999999985 5789887654

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.10  E-value=0.002  Score=51.75  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=29.0

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |++.++||.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~   47 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLE-KGYRVHGLVAR   47 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHH-CCCeEEEEeCC
Confidence            567789999999999999999999985 57898877654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.10  E-value=0.0073  Score=43.92  Aligned_cols=104  Identities=13%  Similarity=0.183  Sum_probs=55.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eeC---CHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS---DLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~~---dl~~~l~~~~~~~~~DVVI  111 (161)
                      .+|+|+|+ |.+|+.+++.+.. .+.+++ +++++.  .....+.   ...+.. +..   +.+.+...  .-.++|+||
T Consensus        20 ~~v~IiG~-G~iG~~la~~L~~-~g~~V~-vid~~~--~~~~~~~---~~~g~~~~~~d~~~~~~l~~~--~~~~ad~Vi   89 (155)
T 2g1u_A           20 KYIVIFGC-GRLGSLIANLASS-SGHSVV-VVDKNE--YAFHRLN---SEFSGFTVVGDAAEFETLKEC--GMEKADMVF   89 (155)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCG--GGGGGSC---TTCCSEEEESCTTSHHHHHTT--TGGGCSEEE
T ss_pred             CcEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHH---hcCCCcEEEecCCCHHHHHHc--CcccCCEEE
Confidence            58999995 9999999999874 567766 455432  1111111   012322 222   22222110  003689999


Q ss_pred             EccCchhHHHHH-HHHHH-cCCcEEEeCCCCCHHHHHHHHH
Q 031341          112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSA  150 (161)
Q Consensus       112 DfT~p~~~~~~~-~~al~-~g~~vVigttg~~~e~~~~L~~  150 (161)
                      .++.+......+ ..+.. .+...++... -+.+..+.|.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~-~~~~~~~~l~~  129 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARYMFNVENVIARV-YDPEKIKIFEE  129 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHHTSCCSEEEEEC-SSGGGHHHHHT
T ss_pred             EEeCCcHHHHHHHHHHHHHCCCCeEEEEE-CCHHHHHHHHH
Confidence            887665554444 33444 5655555543 22333444544

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.10  E-value=0.0018  Score=49.07  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=28.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |||.|.|++|.+|+.+++.+.+. +.+++++..+
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~   33 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR-GHEVLAVVRD   33 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            58999999999999999999854 7898877653

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.10  E-value=0.0011  Score=52.65  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=55.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc----hhhhhcCCCCCCeee----eCC---HHHHHhcccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED----IGMVCDMEQPLEIPV----MSD---LTMVLGSISQ  103 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~----~~~~~g~~~~~~i~v----~~d---l~~~l~~~~~  103 (161)
                      |.+|.|.|++|.+|+.+++.+.+. +.++.++..+.....+    ...+..+. ..++.+    ++|   +++++.    
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~----   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNYQ-SLGVILLEGDINDHETLVKAIK----   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHT----
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHHH-hCCCEEEEeCCCCHHHHHHHHh----
Confidence            568999999999999999999865 6888776554211110    10000000 112221    123   344553    


Q ss_pred             cCCccEEEEccCc---hhHHHHHHHHHHcC-CcEEE
Q 031341          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVV  135 (161)
Q Consensus       104 ~~~~DVVIDfT~p---~~~~~~~~~al~~g-~~vVi  135 (161)
                        ++|+||.++.+   ......+..+.++| +.-++
T Consensus        76 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           76 --QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             --TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             --CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence              79999987743   34456667788888 65554

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.10  E-value=0.0043  Score=50.69  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=30.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd   68 (161)
                      .+++|.|.|++|.+|+.+++.+.+. .+.+++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            3579999999999999999999865 7999988765

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.09  E-value=0.0027  Score=50.46  Aligned_cols=90  Identities=12%  Similarity=0.060  Sum_probs=54.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eCC---HHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~d---l~~~l~~~~~~~~~  107 (161)
                      +.+|.|.|++|.+|+.+++.+.+..+.++.++..+.. ......+.    ..++.+    .+|   +++++.      ++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-~~~~~~l~----~~~~~~~~~D~~d~~~l~~~~~------~~   73 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-KKAAKELR----LQGAEVVQGDQDDQVIMELALN------GA   73 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-SHHHHHHH----HTTCEEEECCTTCHHHHHHHHT------TC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-CHHHHHHH----HCCCEEEEecCCCHHHHHHHHh------cC
Confidence            3689999999999999999998765588887765422 11111111    112211    123   344553      79


Q ss_pred             cEEEEccCch----------hHHHHHHHHHHcCCc-EEE
Q 031341          108 AVVIDFTDAS----------TVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus       108 DVVIDfT~p~----------~~~~~~~~al~~g~~-vVi  135 (161)
                      |+||..+.+.          .....+..+.+.|+. +|.
T Consensus        74 d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~  112 (299)
T 2wm3_A           74 YATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVY  112 (299)
T ss_dssp             SEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999876431          122445667777864 444

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.06  E-value=0.0013  Score=54.36  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=29.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID   68 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd   68 (161)
                      -.+++|.|.|++|.+|+.+++.+.+. + .+++++..
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~r   65 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVDN   65 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEECC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHc-CCceEEEEEC
Confidence            34679999999999999999999854 6 88887654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.04  E-value=0.0012  Score=54.81  Aligned_cols=89  Identities=9%  Similarity=0.018  Sum_probs=54.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+...  ......    ..++... ++++++.      .+|+|+...
T Consensus       155 g~~vgIIG-~G~iG~~iA~~l~-~~G~~V~-~~d~~~~--~~~~~~----~~g~~~~-~l~e~l~------~aDvVi~~v  218 (330)
T 2gcg_A          155 QSTVGIIG-LGRIGQAIARRLK-PFGVQRF-LYTGRQP--RPEEAA----EFQAEFV-STPELAA------QSDFIVVAC  218 (330)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGTCCEE-EEESSSC--CHHHHH----TTTCEEC-CHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCc--chhHHH----hcCceeC-CHHHHHh------hCCEEEEeC
Confidence            37999999 5999999999987 5578865 5664321  111111    2344444 8888886      689999766


Q ss_pred             CchhH----H-HHHHHHHHcCCcEEEeCCC
Q 031341          115 DASTV----Y-DNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~----~-~~~~~al~~g~~vVigttg  139 (161)
                      ++...    . +.....++.|.-+|...+|
T Consensus       219 p~~~~t~~~i~~~~~~~mk~gailIn~srg  248 (330)
T 2gcg_A          219 SLTPATEGLCNKDFFQKMKETAVFINISRG  248 (330)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTTCEEEECSCG
T ss_pred             CCChHHHHhhCHHHHhcCCCCcEEEECCCC
Confidence            44321    1 2233445556555543344

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.02  E-value=0.0011  Score=52.36  Aligned_cols=82  Identities=10%  Similarity=0.066  Sum_probs=51.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||.|.|++|.+|+.+++.+.  .+.+++++..+..       ..    ..++.-.+++++++..    .++|+||.++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~--~g~~V~~~~r~~~-------~~----~~D~~d~~~~~~~~~~----~~~d~vih~a~   63 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA--PVGNLIALDVHSK-------EF----CGDFSNPKGVAETVRK----LRPDVIVNAAA   63 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT--TTSEEEEECTTCS-------SS----CCCTTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh--cCCeEEEeccccc-------cc----cccCCCHHHHHHHHHh----cCCCEEEECcc
Confidence            489999999999999999987  4899887544321       00    1122112345556641    25999998763


Q ss_pred             ch------------------hHHHHHHHHHHcCCcEE
Q 031341          116 AS------------------TVYDNVKQATAFGMRSV  134 (161)
Q Consensus       116 p~------------------~~~~~~~~al~~g~~vV  134 (161)
                      +.                  .....+..+.+.|+++|
T Consensus        64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  100 (299)
T 1n2s_A           64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVV  100 (299)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEE
T ss_pred             cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence            21                  12344566667777766

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.01  E-value=0.00017  Score=60.65  Aligned_cols=93  Identities=14%  Similarity=0.079  Sum_probs=60.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ..+|+|+| +|.||+.+++.+....+.+-+.+++++.. .....+...  ...+  +..++++++++.      ++|+||
T Consensus       129 ~~~v~iIG-aG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~--~~~g~~~~~~~~~~eav~------~aDiVi  199 (350)
T 1x7d_A          129 ARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK--EYSGLTIRRASSVAEAVK------GVDIIT  199 (350)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT--TCTTCEEEECSSHHHHHT------TCSEEE
T ss_pred             CCeEEEEC-CcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH--hccCceEEEeCCHHHHHh------cCCEEE
Confidence            46899999 59999999998876667888889997531 111211111  0114  455789999885      699999


Q ss_pred             EccCchhHHHHH-HHHHHcCCcEEEe
Q 031341          112 DFTDASTVYDNV-KQATAFGMRSVVY  136 (161)
Q Consensus       112 DfT~p~~~~~~~-~~al~~g~~vVig  136 (161)
                      -+|+.....+.+ ...++.|.+++.-
T Consensus       200 ~aTps~~~~pvl~~~~l~~G~~V~~v  225 (350)
T 1x7d_A          200 TVTADKAYATIITPDMLEPGMHLNAV  225 (350)
T ss_dssp             ECCCCSSEEEEECGGGCCTTCEEEEC
T ss_pred             EeccCCCCCceecHHHcCCCCEEEEC
Confidence            666533211111 2456789988753

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=97.01  E-value=0.0023  Score=51.66  Aligned_cols=34  Identities=21%  Similarity=0.161  Sum_probs=29.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd   68 (161)
                      |++|.|.|++|.+|+.+++.+.+.. +.+++++..
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r   38 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   38 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            6799999999999999999998753 789887655

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.01  E-value=0.0024  Score=51.22  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc-chhhhhcCCCCCCeee----eCC---HHHHHhcccccCCc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-DIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKAR  107 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~-~~~~~~g~~~~~~i~v----~~d---l~~~l~~~~~~~~~  107 (161)
                      .+|.|.|++|.+|+.+++.+.+. +.++.++..+..... ...++.    ..++.+    ++|   +.+++.      ++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~l~----~~~v~~v~~Dl~d~~~l~~a~~------~~   80 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNSSKTTLLDEFQ----SLGAIIVKGELDEHEKLVELMK------KV   80 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTCSCHHHHHHHH----HTTCEEEECCTTCHHHHHHHHT------TC
T ss_pred             CeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCCchhhHHHHhh----cCCCEEEEecCCCHHHHHHHHc------CC
Confidence            48999999999999999999854 788887665432110 111111    112221    123   444553      79


Q ss_pred             cEEEEccCch---hHHHHHHHHHHcC-CcEEE
Q 031341          108 AVVIDFTDAS---TVYDNVKQATAFG-MRSVV  135 (161)
Q Consensus       108 DVVIDfT~p~---~~~~~~~~al~~g-~~vVi  135 (161)
                      |+||.++.+.   .....+..+.+.| +.-++
T Consensus        81 d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           81 DVVISALAFPQILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             SEEEECCCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred             CEEEECCchhhhHHHHHHHHHHHhcCCCCEEE
Confidence            9999877542   3456667777887 65554

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.99  E-value=0.0034  Score=52.87  Aligned_cols=98  Identities=12%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeeeC-
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVMS-   92 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~~-   92 (161)
                      .-||.|+|+ |..|+.+++.|. ..|+.=..++|.+.                .|++..+.     ..+.....+..+. 
T Consensus        34 ~~~VlIvGa-GGlGs~va~~La-~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~  111 (340)
T 3rui_A           34 NTKVLLLGA-GTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL  111 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEec
Confidence            369999996 999999999997 56777777888531                12211111     0110011121121 


Q ss_pred             --------------------CHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCCCC
Q 031341           93 --------------------DLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHI  140 (161)
Q Consensus        93 --------------------dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVigttg~  140 (161)
                                          ++++.+.      +.|+|||+| ++++-...-..|.++|+|+|.+..|+
T Consensus       112 ~i~~~g~~~~~~~~~~~~~~~l~~~l~------~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa~G~  174 (340)
T 3rui_A          112 SIPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  174 (340)
T ss_dssp             CCCCTTSCCSCHHHHHHHHHHHHHHHH------HCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEEECS
T ss_pred             cccccCcccchhhhhcCCHHHHHhhhc------cCCEEEecCCCHHHHHHHHHHHHHcCCcEEEeeecc
Confidence                                1344554      689999999 45554566689999999998764343

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.99  E-value=0.0013  Score=54.11  Aligned_cols=60  Identities=20%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+... ..           +...+.++++++.      ..|+|+...
T Consensus       124 g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~-~~dr~~~-~~-----------~~~~~~~l~ell~------~aDvV~l~~  182 (303)
T 1qp8_A          124 GEKVAVLG-LGEIGTRVGKILA-ALGAQVR-GFSRTPK-EG-----------PWRFTNSLEEALR------EARAAVCAL  182 (303)
T ss_dssp             TCEEEEES-CSTHHHHHHHHHH-HTTCEEE-EECSSCC-CS-----------SSCCBSCSHHHHT------TCSEEEECC
T ss_pred             CCEEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-cc-----------CcccCCCHHHHHh------hCCEEEEeC
Confidence            47899999 6999999999987 5578865 5665432 10           1122468888885      799999555


Q ss_pred             C
Q 031341          115 D  115 (161)
Q Consensus       115 ~  115 (161)
                      +
T Consensus       183 P  183 (303)
T 1qp8_A          183 P  183 (303)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.97  E-value=0.0015  Score=55.00  Aligned_cols=107  Identities=12%  Similarity=0.085  Sum_probs=61.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -.+|+|+| +|+||+.+++.+. .-|+++. ++|+.........      ..++..++++++++.      .+|+|+...
T Consensus       164 gktvGIIG-~G~IG~~vA~~l~-~~G~~V~-~~dr~~~~~~~~~------~~g~~~~~~l~ell~------~aDvV~l~~  228 (351)
T 3jtm_A          164 GKTIGTVG-AGRIGKLLLQRLK-PFGCNLL-YHDRLQMAPELEK------ETGAKFVEDLNEMLP------KCDVIVINM  228 (351)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGCCEEE-EECSSCCCHHHHH------HHCCEECSCHHHHGG------GCSEEEECS
T ss_pred             CCEEeEEE-eCHHHHHHHHHHH-HCCCEEE-EeCCCccCHHHHH------hCCCeEcCCHHHHHh------cCCEEEECC
Confidence            36999999 6999999999987 5589855 5665421111111      234445579999986      699999554


Q ss_pred             Cc--hhH---HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          115 DA--STV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       115 ~p--~~~---~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +.  +..   .+.....++.|.-+|-...|--. +.+.|.++-++..+
T Consensus       229 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i  275 (351)
T 3jtm_A          229 PLTEKTRGMFNKELIGKLKKGVLIVNNARGAIM-ERQAVVDAVESGHI  275 (351)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGB-CHHHHHHHHHHTSE
T ss_pred             CCCHHHHHhhcHHHHhcCCCCCEEEECcCchhh-CHHHHHHHHHhCCc
Confidence            31  211   13334445555444432223211 22345555454444

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.97  E-value=0.0051  Score=50.81  Aligned_cols=35  Identities=23%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .|++|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   62 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKH-EGHYVIASDWK   62 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             cCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEECC
Confidence            568999999999999999999985 47898876653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.96  E-value=0.0027  Score=53.40  Aligned_cols=62  Identities=18%  Similarity=0.196  Sum_probs=44.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++.+ +|+...  +.. ..    . ++...+++++++.      ..|+|+-..
T Consensus       174 ktvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~~--~~~-~~----~-g~~~~~~l~ell~------~sDvV~l~~  235 (345)
T 4g2n_A          174 RRLGIFG-MGRIGRAIATRAR-GFGLAIHY-HNRTRL--SHA-LE----E-GAIYHDTLDSLLG------ASDIFLIAA  235 (345)
T ss_dssp             CEEEEES-CSHHHHHHHHHHH-TTTCEEEE-ECSSCC--CHH-HH----T-TCEECSSHHHHHH------TCSEEEECS
T ss_pred             CEEEEEE-eChhHHHHHHHHH-HCCCEEEE-ECCCCc--chh-hh----c-CCeEeCCHHHHHh------hCCEEEEec
Confidence            6899999 6999999999987 55898764 675421  111 11    1 3444579999996      799999555

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.95  E-value=0.0037  Score=51.16  Aligned_cols=110  Identities=15%  Similarity=0.117  Sum_probs=60.7

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCeeeeCCHHHHHhccccc
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~------~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~  104 (161)
                      ....++||+|+|+ |.||..++..+. ..+.++..+.+...      .|.... ..+......+..+++++++       
T Consensus        15 ~~~~~~kI~IiGa-Ga~G~~~a~~L~-~~G~~V~l~~~~~~~~~i~~~g~~~~-~~~~~~~~~~~~~~~~~~~-------   84 (318)
T 3hwr_A           15 LYFQGMKVAIMGA-GAVGCYYGGMLA-RAGHEVILIARPQHVQAIEATGLRLE-TQSFDEQVKVSASSDPSAV-------   84 (318)
T ss_dssp             -----CEEEEESC-SHHHHHHHHHHH-HTTCEEEEECCHHHHHHHHHHCEEEE-CSSCEEEECCEEESCGGGG-------
T ss_pred             hhccCCcEEEECc-CHHHHHHHHHHH-HCCCeEEEEEcHhHHHHHHhCCeEEE-cCCCcEEEeeeeeCCHHHc-------
Confidence            3445689999995 999999999987 45778776622110      011110 0000001233456777653       


Q ss_pred             CCccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031341          105 KARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFC  152 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A  152 (161)
                      ..+|+||-++.+....+.+...   +..+..+|+-+-|+..++  .|.+.-
T Consensus        85 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--~l~~~~  133 (318)
T 3hwr_A           85 QGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD--TLRSLL  133 (318)
T ss_dssp             TTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH--HHHHHC
T ss_pred             CCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH--HHHHHc
Confidence            3799999666555444444332   334566777777987653  444443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=96.94  E-value=0.00024  Score=58.91  Aligned_cols=90  Identities=10%  Similarity=0.015  Sum_probs=58.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ..+|+|+| +|.||+.+++.+....+.+.+.+++++.. .+...+..+.. ..++. ++++++++ .      +|+|+-+
T Consensus       125 ~~~v~iIG-aG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~-~~~~~-~~~~~e~v-~------aDvVi~a  194 (322)
T 1omo_A          125 SSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR-GISAS-VQPAEEAS-R------CDVLVTT  194 (322)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT-TCCEE-ECCHHHHT-S------SSEEEEC
T ss_pred             CCEEEEEc-CcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhc-CceEE-ECCHHHHh-C------CCEEEEe
Confidence            46899999 59999999999987677888999997531 11111111100 02344 78888876 3      8999966


Q ss_pred             cCchhHHHHH-HHHHHcCCcEEEe
Q 031341          114 TDASTVYDNV-KQATAFGMRSVVY  136 (161)
Q Consensus       114 T~p~~~~~~~-~~al~~g~~vVig  136 (161)
                      |+. .. +.+ ...++.|++++..
T Consensus       195 Tp~-~~-pv~~~~~l~~G~~V~~i  216 (322)
T 1omo_A          195 TPS-RK-PVVKAEWVEEGTHINAI  216 (322)
T ss_dssp             CCC-SS-CCBCGGGCCTTCEEEEC
T ss_pred             eCC-CC-ceecHHHcCCCeEEEEC
Confidence            643 22 222 2467889998754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.94  E-value=0.0063  Score=53.29  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~   70 (161)
                      .++||+|+| +|.||..++..+.+.+|+ +++ ++|++
T Consensus        17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~-~~D~~   52 (478)
T 3g79_A           17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVL-GFQRN   52 (478)
T ss_dssp             SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEE-EECCC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEE-EEECC
Confidence            458999999 599999999999876688 876 46643

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.94  E-value=0.0036  Score=50.12  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=27.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |+||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r   33 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVD-EGLSVVVVDN   33 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeC
Confidence            57999999999999999999985 5788887654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.93  E-value=0.0017  Score=51.89  Aligned_cols=94  Identities=18%  Similarity=0.255  Sum_probs=56.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchhhhh-----cCCCCCCeeee---
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIGMVC-----DMEQPLEIPVM---   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~~~~-----g~~~~~~i~v~---   91 (161)
                      .||.|+|+ |.+|+.+++.|. ..|+.=+.++|.+..                |++..+.+     .+.....+..+   
T Consensus        29 ~~VlvvG~-GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  106 (251)
T 1zud_1           29 SQVLIIGL-GGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR  106 (251)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CcEEEEcc-CHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            69999995 999999999987 567766778875321                11111000     00000112111   


Q ss_pred             ---CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeC
Q 031341           92 ---SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~g~~vVigt  137 (161)
                         +++++.+.      ++|+|||++.. +.-......|.++++|+|.+.
T Consensus       107 ~~~~~~~~~~~------~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~  150 (251)
T 1zud_1          107 LTGEALKDAVA------RADVVLDCTDNMATRQEINAACVALNTPLITAS  150 (251)
T ss_dssp             CCHHHHHHHHH------HCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence               12344553      68999998853 333455578888999998653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.93  E-value=0.0015  Score=53.68  Aligned_cols=100  Identities=15%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. .-|+++.+ +|+.....           ..+...+++++++.      ..|+|+-..+
T Consensus       123 ~tvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~~~~-----------~~~~~~~~l~ell~------~aDiV~l~~P  182 (290)
T 3gvx_A          123 KALGILG-YGGIGRRVAHLAK-AFGMRVIA-YTRSSVDQ-----------NVDVISESPADLFR------QSDFVLIAIP  182 (290)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HHTCEEEE-ECSSCCCT-----------TCSEECSSHHHHHH------HCSEEEECCC
T ss_pred             chheeec-cCchhHHHHHHHH-hhCcEEEE-Eecccccc-----------ccccccCChHHHhh------ccCeEEEEee
Confidence            6999999 6999999999987 45898774 56532110           11234569999986      6999995553


Q ss_pred             ch-hHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341          116 AS-TVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       116 p~-~~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~  156 (161)
                      .. ...    +.....++.|.-+|--.+|-.. +.+.|.++.++..
T Consensus       183 ~t~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~  227 (290)
T 3gvx_A          183 LTDKTRGMVNSRLLANARKNLTIVNVARADVV-SKPDMIGFLKERS  227 (290)
T ss_dssp             CCTTTTTCBSHHHHTTCCTTCEEEECSCGGGB-CHHHHHHHHHHCT
T ss_pred             ccccchhhhhHHHHhhhhcCceEEEeehhccc-CCcchhhhhhhcc
Confidence            21 111    2333444555555533333212 2234554444433

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.93  E-value=0.0016  Score=54.94  Aligned_cols=108  Identities=8%  Similarity=0.037  Sum_probs=61.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~e-Lvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -.+|+|+| +|+||+.+++.+. .-+++ +. ++|+.....+...      ..|+..+.++++++.      .+|+|+..
T Consensus       164 g~tvgIIG-~G~IG~~vA~~l~-~~G~~~V~-~~d~~~~~~~~~~------~~g~~~~~~l~ell~------~aDvV~l~  228 (364)
T 2j6i_A          164 GKTIATIG-AGRIGYRVLERLV-PFNPKELL-YYDYQALPKDAEE------KVGARRVENIEELVA------QADIVTVN  228 (364)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGCCSEEE-EECSSCCCHHHHH------HTTEEECSSHHHHHH------TCSEEEEC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-hCCCcEEE-EECCCccchhHHH------hcCcEecCCHHHHHh------cCCEEEEC
Confidence            36899999 6999999999987 45786 65 5665432111111      235555578999986      79999966


Q ss_pred             cCchhH-----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          114 TDASTV-----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       114 T~p~~~-----~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .++...     .+.....++.|.-+|--..|- .-+.+.|.++.++..+-
T Consensus       229 ~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~-~vd~~aL~~aL~~g~i~  277 (364)
T 2j6i_A          229 APLHAGTKGLINKELLSKFKKGAWLVNTARGA-ICVAEDVAAALESGQLR  277 (364)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEE
T ss_pred             CCCChHHHHHhCHHHHhhCCCCCEEEECCCCc-hhCHHHHHHHHHcCCCc
Confidence            644321     122233344444444322332 12234455555554443

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.92  E-value=0.0026  Score=50.49  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~   69 (161)
                      +||.|.|++|.+|+.+++.+.+. ++.+++++..+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   37 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIR   37 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            68999999999999999999876 57888876543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.92  E-value=0.0022  Score=53.24  Aligned_cols=88  Identities=13%  Similarity=0.075  Sum_probs=54.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+... .+...      ..++. +.++++++.      .+|+|+...
T Consensus       150 g~~vgIIG-~G~iG~~iA~~l~-~~G~~V~-~~d~~~~-~~~~~------~~g~~-~~~l~~~l~------~aDvVil~v  212 (334)
T 2dbq_A          150 GKTIGIIG-LGRIGQAIAKRAK-GFNMRIL-YYSRTRK-EEVER------ELNAE-FKPLEDLLR------ESDFVVLAV  212 (334)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-HHHHH------HHCCE-ECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEc-cCHHHHHHHHHHH-hCCCEEE-EECCCcc-hhhHh------hcCcc-cCCHHHHHh------hCCEEEECC
Confidence            47999999 6999999999987 4678865 5665432 11111      12333 358888886      689999766


Q ss_pred             Cchh-H---H-HHHHHHHHcCCcEEEeCCC
Q 031341          115 DAST-V---Y-DNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~-~---~-~~~~~al~~g~~vVigttg  139 (161)
                      ++.. .   . +.....++.|.-+|...+|
T Consensus       213 p~~~~t~~~i~~~~~~~mk~~ailIn~srg  242 (334)
T 2dbq_A          213 PLTRETYHLINEERLKLMKKTAILINIARG  242 (334)
T ss_dssp             CCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             CCChHHHHhhCHHHHhcCCCCcEEEECCCC
Confidence            4433 1   1 2333445566655543444

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=96.90  E-value=0.0034  Score=50.09  Aligned_cols=70  Identities=14%  Similarity=0.197  Sum_probs=40.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~-~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |.+|.|.|++|.+|+.+++.+.+. + .++.+.++...... ....... ...++.- .++++++.      ++|+||.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g-~~v~~~~~~~~~~~~~~~~~~~-~~~Dl~~-~~~~~~~~------~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSES-N-EIVVIDNLSSGNEEFVNEAARL-VKADLAA-DDIKDYLK------GAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTT-S-CEEEECCCSSCCGGGSCTTEEE-ECCCTTT-SCCHHHHT------TCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-C-CEEEEEcCCCCChhhcCCCcEE-EECcCCh-HHHHHHhc------CCCEEEEC
Confidence            568999999999999999999754 5 66666553321110 0000000 0122222 45566664      79999986


Q ss_pred             c
Q 031341          114 T  114 (161)
Q Consensus       114 T  114 (161)
                      .
T Consensus        71 a   71 (313)
T 3ehe_A           71 A   71 (313)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.89  E-value=0.0043  Score=50.18  Aligned_cols=35  Identities=29%  Similarity=0.336  Sum_probs=29.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .|++|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~   54 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLE-RGDKVVGIDNF   54 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEECC
Confidence            357999999999999999999985 57898877553

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.94  E-value=0.00015  Score=56.19  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=53.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      ..+||+|+| .|.||+.+++.+.+ .+.++. ++++...   ...+.    ..++..+ ++++++.      .+|+||-+
T Consensus        18 ~~~~I~iIG-~G~mG~~la~~L~~-~G~~V~-~~~r~~~---~~~~~----~~g~~~~-~~~~~~~------~aDvVila   80 (201)
T 2yjz_A           18 KQGVVCIFG-TGDFGKSLGLKMLQ-CGYSVV-FGSRNPQ---VSSLL----PRGAEVL-CYSEAAS------RSDVIVLA   80 (201)
Confidence            347999999 59999999999874 467755 4565322   11111    2345444 6677664      69999956


Q ss_pred             cCchhHHHHHH-HHHHcCCcEEEeCCCCC
Q 031341          114 TDASTVYDNVK-QATAFGMRSVVYVPHIQ  141 (161)
Q Consensus       114 T~p~~~~~~~~-~al~~g~~vVigttg~~  141 (161)
                      +.|....+.+. .....+..+|.-.+|.+
T Consensus        81 v~~~~~~~v~~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           81 VHREHYDFLAELADSLKGRVLIDVSNNQK  109 (201)
Confidence            65543333221 11223555555455664

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.87  E-value=0.002  Score=51.77  Aligned_cols=69  Identities=19%  Similarity=0.262  Sum_probs=46.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..||+|+|+ |.||+.+++.+.+. +++ +.+++++.  .+..++.   ...++.+++++++++.      ++|+||.+|
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~-g~~-V~v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~aDiVi~at  194 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKE-GAK-VFLWNRTK--EKAIKLA---QKFPLEVVNSPEEVID------KVQVIVNTT  194 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHH-TCE-EEEECSSH--HHHHHHT---TTSCEEECSCGGGTGG------GCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHc-CCE-EEEEECCH--HHHHHHH---HHcCCeeehhHHhhhc------CCCEEEEeC
Confidence            368999995 99999999999865 565 45777642  1222332   2345666667777664      689988776


Q ss_pred             Cch
Q 031341          115 DAS  117 (161)
Q Consensus       115 ~p~  117 (161)
                      ++.
T Consensus       195 p~~  197 (275)
T 2hk9_A          195 SVG  197 (275)
T ss_dssp             STT
T ss_pred             CCC
Confidence            544

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.86  E-value=0.0036  Score=49.87  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +||.|.|++|.+|+.+++.+.+ .+.+++++..+...+   . +.    ..++.-.+++++++..    ..+|+||.++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~---~-~~----~~Dl~d~~~~~~~~~~----~~~d~vih~A~   69 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQ-NNWHAVGCGFRRARP---K-FE----QVNLLDSNAVHHIIHD----FQPHVIVHCAA   69 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEEC--------------------------CHHHHHH----HCCSEEEECC-
T ss_pred             CeEEEECCCcHHHHHHHHHHHh-CCCeEEEEccCCCCC---C-eE----EecCCCHHHHHHHHHh----hCCCEEEECCc
Confidence            6899999999999999999984 578888765422110   0 11    1233223456666652    25899998763


Q ss_pred             ch------------------hHHHHHHHHHHcCCcEE
Q 031341          116 AS------------------TVYDNVKQATAFGMRSV  134 (161)
Q Consensus       116 p~------------------~~~~~~~~al~~g~~vV  134 (161)
                      +.                  .....++.+.++|.++|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  106 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLI  106 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTCEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            21                  12345567777787766

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=96.85  E-value=0.0061  Score=47.81  Aligned_cols=28  Identities=14%  Similarity=0.325  Sum_probs=24.0

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcC
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR   59 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~   59 (161)
                      .-.|+||.|.|++|.+|+.+++.+.+..
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g   30 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGA   30 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTT
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcC
Confidence            3457899999999999999999998653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.83  E-value=0.0074  Score=52.55  Aligned_cols=70  Identities=13%  Similarity=0.222  Sum_probs=44.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cCC-------CCCCeeeeCCHHHH
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DME-------QPLEIPVMSDLTMV   97 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~---------g~~-------~~~~i~v~~dl~~~   97 (161)
                      +.|||+|+| +|.||..++..+. ..+.+++ ++|++.  ..+..+.         |..       ....+.+++|++++
T Consensus         7 ~~~~I~VIG-~G~vG~~lA~~la-~~G~~V~-~~d~~~--~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            7 GSMNLTIIG-SGSVGLVTGACLA-DIGHDVF-CLDVDQ--AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred             CCceEEEEC-cCHHHHHHHHHHH-hCCCEEE-EEECCH--HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence            459999999 5999999999887 5678865 456421  0111110         000       01135677899887


Q ss_pred             HhcccccCCccEEEEcc
Q 031341           98 LGSISQSKARAVVIDFT  114 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT  114 (161)
                      +.      ++|++|.+.
T Consensus        82 ~~------~aDvviiaV   92 (478)
T 2y0c_A           82 VA------HGDVQFIAV   92 (478)
T ss_dssp             HH------HCSEEEECC
T ss_pred             hh------cCCEEEEEe
Confidence            75      689999654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.83  E-value=0.0043  Score=49.47  Aligned_cols=62  Identities=15%  Similarity=0.037  Sum_probs=41.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++||.|.|++|.+|+.+++.+.+ .+.+++++..+ .. .|            +.-.+++++++..    .++|+||.++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~-~g~~v~~~~r~-~~-~D------------~~d~~~~~~~~~~----~~~d~vih~a   63 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVLRTR-DE-LN------------LLDSRAVHDFFAS----ERIDQVYLAA   63 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTT-CTTEEEECCCT-TT-CC------------TTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCeEEEEecC-cc-CC------------ccCHHHHHHHHHh----cCCCEEEEcC
Confidence            37899999999999999999874 57887764332 11 11            1111345555542    2799999876


Q ss_pred             C
Q 031341          115 D  115 (161)
Q Consensus       115 ~  115 (161)
                      .
T Consensus        64 ~   64 (321)
T 1e6u_A           64 A   64 (321)
T ss_dssp             C
T ss_pred             e
Confidence            3

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.82  E-value=0.0013  Score=52.33  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |||.|.|++|.+|+.+++.|. ..|.+++++..+
T Consensus         1 MkILVTGatGfIG~~L~~~L~-~~G~~V~~l~R~   33 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLN-ARGHEVTLVSRK   33 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECC
Confidence            799999999999999999987 568999987654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.81  E-value=0.0063  Score=49.49  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ++|.|.|++|.+|+.+++.+.+....+++++..
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r   79 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDN   79 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            689999999999999999998653278776654

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=96.81  E-value=0.0049  Score=54.11  Aligned_cols=73  Identities=8%  Similarity=0.083  Sum_probs=60.4

Q ss_pred             CCeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341           86 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus        86 ~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      .++|+|..+.++.+.   ...+|+.|.+.++..+.+.++.|.++|+++|+=+.|+..++.++|.++|++.++-.-|
T Consensus        19 ~~~Pv~~~~~~~~~~---p~~~DlavI~vPa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliG   91 (480)
T 3dmy_A           19 QALTQVRRWDSACQK---LPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMG   91 (480)
T ss_dssp             -CCEEESSHHHHHHH---STTCCEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEEC
T ss_pred             CCCcccchHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            368999998887653   1379998989999999999999999999988878899988888999999998765543

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.80  E-value=0.0067  Score=52.33  Aligned_cols=110  Identities=15%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------CC-CeeeeCCHHHHHhcccc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSISQ  103 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~------~~-~i~v~~dl~~~l~~~~~  103 (161)
                      .||+|.| +|++|+..++.+.+..+.+++++.|+.     ..|-+..++..+..      .+ +.. +-+.++++.    
T Consensus       210 ~~vaVqG-~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~-~~~~~eil~----  283 (415)
T 2tmg_A          210 ATVAVQG-FGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLE----  283 (415)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSE-EECHHHHTT----
T ss_pred             CEEEEEC-CcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCce-EcCchhhhc----
Confidence            7899999 699999999988753799999999963     34444433321110      11 111 225567765    


Q ss_pred             cCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                       .++|+++.++..+.. .+++.   +-+..+|++-.  .++++..+.|.    +++|++
T Consensus       284 -~~~DIliP~A~~n~i~~~~a~---~l~ak~V~EgAN~p~t~~a~~~l~----~~Gi~~  334 (415)
T 2tmg_A          284 -LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEADEILS----RRGILV  334 (415)
T ss_dssp             -CSCSEEEECSSTTSBCHHHHT---TCCCSEEECCSSSCBCHHHHHHHH----HTTCEE
T ss_pred             -CCCcEEEecCCcCccCcccHH---HcCCeEEEeCCCcccCHHHHHHHH----HCCCEE
Confidence             589999998876544 34444   44888888754  45655544443    445544

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.79  E-value=0.029  Score=46.47  Aligned_cols=73  Identities=19%  Similarity=0.181  Sum_probs=46.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCeeeeCCHHHHHhcccccC
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSK  105 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~---g--~~~~~~~g-~~~~~~i~v~~dl~~~l~~~~~~~  105 (161)
                      +.++||+|+|+ |.||..++..+.. .++ + +.++|.+..   +  .+...... ......+..++|+++++.      
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~-~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~------   77 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCAL-RELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT------   77 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHH-HTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT------
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC------
Confidence            34589999996 9999999998875 455 7 778886431   1  11111110 001234555789987774      


Q ss_pred             CccEEEEcc
Q 031341          106 ARAVVIDFT  114 (161)
Q Consensus       106 ~~DVVIDfT  114 (161)
                      ++|+||...
T Consensus        78 ~aDiVi~a~   86 (331)
T 1pzg_A           78 GADCVIVTA   86 (331)
T ss_dssp             TCSEEEECC
T ss_pred             CCCEEEEcc
Confidence            799988654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.78  E-value=0.0067  Score=48.95  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=28.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~-~g~~V~~~~r   52 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLP-QGHEILVIDN   52 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGG-GTCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            37999999999999999999985 4789887665

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.77  E-value=0.0068  Score=49.31  Aligned_cols=110  Identities=12%  Similarity=0.106  Sum_probs=62.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--C---CC---CeeeeCCHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--Q---PL---EIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~--~---~~---~i~v~~dl~~~l~~~~~~~~  106 (161)
                      ++||+|+|+ |.||..++..+.+ .+.++. ++++... ..+.+ .|+.  .   ..   .+.++++.+++       ..
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~-~g~~V~-~~~r~~~-~~i~~-~g~~~~~~~g~~~~~~~~~~~~~~~~-------~~   69 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQR-SGEDVH-FLLRRDY-EAIAG-NGLKVFSINGDFTLPHVKGYRAPEEI-------GP   69 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHH-TSCCEE-EECSTTH-HHHHH-TCEEEEETTCCEEESCCCEESCHHHH-------CC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEEcCcH-HHHHh-CCCEEEcCCCeEEEeeceeecCHHHc-------CC
Confidence            379999995 9999999999874 466755 4454321 11110 1110  0   00   23456777663       37


Q ss_pred             ccEEEEccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          107 RAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~---al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      +|+||-++.+....+.+..   .+..+..+|+-.-|+..+  +.|.+.-.+.+|+
T Consensus        70 ~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~--~~l~~~~~~~~v~  122 (312)
T 3hn2_A           70 MDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNE--EALATLFGAERII  122 (312)
T ss_dssp             CSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH--HHHHHHTCGGGEE
T ss_pred             CCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH--HHHHHHCCCCcEE
Confidence            9999966666555444433   344566677766788643  2455544444444

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.77  E-value=0.0026  Score=50.17  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=27.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |+||.|.| +|.+|+.+++.+.+ .+.+++++..+
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~-~g~~V~~~~r~   35 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTA-QGHEVTGLRRS   35 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHH-TTCCEEEEECT
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCC
Confidence            47999999 59999999999985 47898887764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.77  E-value=0.0022  Score=52.41  Aligned_cols=111  Identities=14%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--CC----CC---CeeeeCCHHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--EQ----PL---EIPVMSDLTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~--~~----~~---~i~v~~dl~~~l~~~~~~~  105 (161)
                      ++||+|+|+ |.||..++..+.+ .+.++. ++++... ..+.+ .|+  ..    ..   .+.++++++++.      .
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~-~g~~V~-~~~r~~~-~~i~~-~Gl~~~~~~~g~~~~~~~~~~~~~~~~~------~   70 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAK-TGHCVS-VVSRSDY-ETVKA-KGIRIRSATLGDYTFRPAAVVRSAAELE------T   70 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHH-TTCEEE-EECSTTH-HHHHH-HCEEEEETTTCCEEECCSCEESCGGGCS------S
T ss_pred             CCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCChH-HHHHh-CCcEEeecCCCcEEEeeeeeECCHHHcC------C
Confidence            379999995 9999999998874 567766 4454321 11111 010  00    00   234567777654      2


Q ss_pred             CccEEEEccCchhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          106 ARAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~---~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .+|+||-++.+....+.+   ...+..+..+|+-.-|+..+  +.|.+.-.+.+|+
T Consensus        71 ~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~--~~l~~~~~~~~vl  124 (320)
T 3i83_A           71 KPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE--PEVAAAFPDNEVI  124 (320)
T ss_dssp             CCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS--HHHHHHSTTSCEE
T ss_pred             CCCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH--HHHHHHCCCCcEE
Confidence            799999666554443333   33344566777777788643  2344444444454

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=96.75  E-value=0.0074  Score=47.64  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=26.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARG-MEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd   68 (161)
                      ||.|.|++|.+|+.+++.+.+. + .+++++..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~~r   32 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDK-GITDILVVDN   32 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCCEEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHC-CCcEEEEEcc
Confidence            5899999999999999999855 5 78776654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.74  E-value=0.01  Score=45.40  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~   69 (161)
                      .+|.|.|++|.+|+.+++.+.+. +.  +++++..+
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~r~   53 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRR   53 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESS
T ss_pred             CeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEEcC
Confidence            58999999999999999999854 56  87766543

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.74  E-value=0.0058  Score=49.13  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=28.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~r   37 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLA-HGYDVVIADN   37 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHH-CCCcEEEEec
Confidence            46899999999999999999984 5888876654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.74  E-value=0.0064  Score=52.78  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             CCC-CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           32 PQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        32 ~~~-~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ..+ |+||.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus       143 ~~~k~m~VLVTGatG~IG~~l~~~L~~-~G~~V~~l~R~  180 (516)
T 3oh8_A          143 FDGSPLTVAITGSRGLVGRALTAQLQT-GGHEVIQLVRK  180 (516)
T ss_dssp             SCCCCCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECC
Confidence            344 79999999999999999999985 58898877764

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.73  E-value=0.0096  Score=48.30  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=28.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .|++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   59 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDN   59 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence            3579999999999999999999854 788887655

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.73  E-value=0.0053  Score=49.37  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=29.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +.||.|.|++|.+|+.+++.+.+ .+.++++..++
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~-~G~~V~~~~r~   42 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQ-KGYAVNTTVRD   42 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEcC
Confidence            47899999999999999999984 68998877653

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.72  E-value=0.0046  Score=49.63  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=27.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r   33 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALS-QGIDLIVFDN   33 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHh-CCCEEEEEeC
Confidence            57899999999999999999985 6889887654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.0048  Score=50.66  Aligned_cols=99  Identities=17%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCC-CCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~-~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .||+|+| .|.||+.++..+.  .|++++ ++|++... ....+.+ ... -.++...+|+++ ++      ++|+||.+
T Consensus        13 ~~V~vIG-~G~MG~~iA~~la--aG~~V~-v~d~~~~~~~~~~~~l-~~~~~~~i~~~~~~~~-~~------~aDlViea   80 (293)
T 1zej_A           13 MKVFVIG-AGLMGRGIAIAIA--SKHEVV-LQDVSEKALEAAREQI-PEELLSKIEFTTTLEK-VK------DCDIVMEA   80 (293)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH--TTSEEE-EECSCHHHHHHHHHHS-CGGGGGGEEEESSCTT-GG------GCSEEEEC
T ss_pred             CeEEEEe-eCHHHHHHHHHHH--cCCEEE-EEECCHHHHHHHHHHH-HHHHhCCeEEeCCHHH-Hc------CCCEEEEc
Confidence            6899999 5999999999987  699855 67754211 1111110 000 014666778876 43      78999966


Q ss_pred             cCchhH-HHHH-HHHHH-cCCcEEEeCCCCCHHHHH
Q 031341          114 TDASTV-YDNV-KQATA-FGMRSVVYVPHIQLETVS  146 (161)
Q Consensus       114 T~p~~~-~~~~-~~al~-~g~~vVigttg~~~e~~~  146 (161)
                      .+-+.. ...+ ..... .+.-+++-|+.++.++..
T Consensus        81 vpe~~~vk~~l~~~l~~~~~~IlasntSti~~~~~a  116 (293)
T 1zej_A           81 VFEDLNTKVEVLREVERLTNAPLCSNTSVISVDDIA  116 (293)
T ss_dssp             CCSCHHHHHHHHHHHHTTCCSCEEECCSSSCHHHHH
T ss_pred             CcCCHHHHHHHHHHHhcCCCCEEEEECCCcCHHHHH
Confidence            533322 2222 21111 343333445567766543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.70  E-value=0.0029  Score=52.08  Aligned_cols=87  Identities=16%  Similarity=0.072  Sum_probs=53.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. .-++++. ++|+... .....      +.++.. .++++++.      ..|+|+...+
T Consensus       143 ~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~-~~~~~------~~g~~~-~~l~ell~------~aDvV~l~~p  205 (307)
T 1wwk_A          143 KTIGIIG-FGRIGYQVAKIAN-ALGMNIL-LYDPYPN-EERAK------EVNGKF-VDLETLLK------ESDVVTIHVP  205 (307)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-HHHHH------HTTCEE-CCHHHHHH------HCSEEEECCC
T ss_pred             ceEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCCC-hhhHh------hcCccc-cCHHHHHh------hCCEEEEecC
Confidence            6899999 6999999999987 4578865 5665432 11111      234433 48989886      6999996654


Q ss_pred             chh-H---H-HHHHHHHHcCCcEEEeCCC
Q 031341          116 AST-V---Y-DNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus       116 p~~-~---~-~~~~~al~~g~~vVigttg  139 (161)
                      ... .   . +.....++.|.-+|--.+|
T Consensus       206 ~~~~t~~li~~~~l~~mk~ga~lin~arg  234 (307)
T 1wwk_A          206 LVESTYHLINEERLKLMKKTAILINTSRG  234 (307)
T ss_dssp             CSTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             CChHHhhhcCHHHHhcCCCCeEEEECCCC
Confidence            322 1   1 2333445666555543333

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.69  E-value=0.014  Score=43.24  Aligned_cols=107  Identities=13%  Similarity=0.067  Sum_probs=54.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ee---CCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~---~dl~~~l~~~~~~~~~DVV  110 (161)
                      ..+|+|+| .|+||+.+++.+.+..+.+++ ++|++.  .....+.    +.++. ++   ++.+. +.+...-.++|+|
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~-vid~~~--~~~~~~~----~~g~~~~~gd~~~~~~-l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISL-GIEIRE--EAAQQHR----SEGRNVISGDATDPDF-WERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEE-EEESCH--HHHHHHH----HTTCCEEECCTTCHHH-HHTBCSCCCCCEE
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEE-EEECCH--HHHHHHH----HCCCCEEEcCCCCHHH-HHhccCCCCCCEE
Confidence            36899999 599999999998744267766 556432  1122211    12332 22   23332 2210001368999


Q ss_pred             EEccCchhHH-HHHHHHHHcC-CcEEEeCCCCCHHHHHHHHHH
Q 031341          111 IDFTDASTVY-DNVKQATAFG-MRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       111 IDfT~p~~~~-~~~~~al~~g-~~vVigttg~~~e~~~~L~~~  151 (161)
                      |.++...... ..+..+.+.+ ...|+..+ -+.+..+.|.++
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l~~~  151 (183)
T 3c85_A          110 LLAMPHHQGNQTALEQLQRRNYKGQIAAIA-EYPDQLEGLLES  151 (183)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCSEEEEEE-SSHHHHHHHHHH
T ss_pred             EEeCCChHHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHc
Confidence            9666543333 3334444544 22333222 345555555443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.67  E-value=0.0039  Score=51.58  Aligned_cols=64  Identities=14%  Similarity=0.126  Sum_probs=44.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| .|+||+.+++.+. .-++++. ++|+ ... .....      +.++...+++++++.      .+|+|+...
T Consensus       147 ~~vgIIG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~~-~~~~~------~~g~~~~~~l~ell~------~aDvVil~~  210 (320)
T 1gdh_A          147 KTLGIYG-FGSIGQALAKRAQ-GFDMDID-YFDTHRAS-SSDEA------SYQATFHDSLDSLLS------VSQFFSLNA  210 (320)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSCCC-HHHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCcC-hhhhh------hcCcEEcCCHHHHHh------hCCEEEEec
Confidence            6899999 6999999999987 5578865 5665 432 11111      234444558999886      699999665


Q ss_pred             C
Q 031341          115 D  115 (161)
Q Consensus       115 ~  115 (161)
                      +
T Consensus       211 p  211 (320)
T 1gdh_A          211 P  211 (320)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=96.67  E-value=0.016  Score=46.88  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |||.|.|++|.+|+.+++.+.+..+.+++++..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r   33 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEec
Confidence            589999999999999999999766889887654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.67  E-value=0.0069  Score=50.08  Aligned_cols=74  Identities=16%  Similarity=0.117  Sum_probs=43.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeee---eCCHHHHHhcccccCCccE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g~~~~~~~g~~~~~~i~v---~~dl~~~l~~~~~~~~~DV  109 (161)
                      .++||+|+||+|.+|..++..+....- .+|+ ++|.........++.....+..+..   ++|+++++.      ++|+
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~-l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~------gaDv   79 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLH-LYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT------GMDL   79 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEE-EEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT------TCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEE-EEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC------CCCE
Confidence            468999999889999999998875432 4555 4774321001112221110112222   236777774      8999


Q ss_pred             EEEcc
Q 031341          110 VIDFT  114 (161)
Q Consensus       110 VIDfT  114 (161)
                      ||-..
T Consensus        80 Vi~~a   84 (326)
T 1smk_A           80 IIVPA   84 (326)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            98654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.67  E-value=0.013  Score=50.76  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=27.6

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ..+.||+|+|+ |.||..++..+. ..+++++ ++|++
T Consensus        35 ~~~~kV~VIGa-G~MG~~iA~~la-~~G~~V~-l~D~~   69 (463)
T 1zcj_A           35 QPVSSVGVLGL-GTMGRGIAISFA-RVGISVV-AVESD   69 (463)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHH-TTTCEEE-EECSS
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEECC
Confidence            34578999995 999999999887 5688865 56753

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.66  E-value=0.0028  Score=52.83  Aligned_cols=62  Identities=16%  Similarity=0.221  Sum_probs=42.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++. ++|+...  ....+      .+...+.++++++.      ..|+|+-..
T Consensus       141 ~tvGIIG-lG~IG~~vA~~l~-~~G~~V~-~~dr~~~--~~~~~------~~~~~~~~l~ell~------~aDvV~l~l  202 (324)
T 3hg7_A          141 RTLLILG-TGSIGQHIAHTGK-HFGMKVL-GVSRSGR--ERAGF------DQVYQLPALNKMLA------QADVIVSVL  202 (324)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC--CCTTC------SEEECGGGHHHHHH------TCSEEEECC
T ss_pred             ceEEEEE-ECHHHHHHHHHHH-hCCCEEE-EEcCChH--Hhhhh------hcccccCCHHHHHh------hCCEEEEeC
Confidence            6999999 6999999999987 4589876 4564321  11110      11222468999886      689988544

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.66  E-value=0.00056  Score=54.49  Aligned_cols=102  Identities=11%  Similarity=0.086  Sum_probs=56.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      ||+|+| +|+||+.+++.+... +++ +.+++++.  .+..++..   ..+.. +++++++ .      ++|+||.+|++
T Consensus       118 ~v~iiG-~G~~g~~~a~~l~~~-g~~-v~v~~r~~--~~~~~l~~---~~~~~-~~~~~~~-~------~~Divi~~tp~  181 (263)
T 2d5c_A          118 PALVLG-AGGAGRAVAFALREA-GLE-VWVWNRTP--QRALALAE---EFGLR-AVPLEKA-R------EARLLVNATRV  181 (263)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHT-TCC-EEEECSSH--HHHHHHHH---HHTCE-ECCGGGG-G------GCSEEEECSST
T ss_pred             eEEEEC-CcHHHHHHHHHHHHC-CCE-EEEEECCH--HHHHHHHH---Hhccc-hhhHhhc-c------CCCEEEEccCC
Confidence            899999 599999999998854 565 55777642  11222211   11222 4566666 4      68998877755


Q ss_pred             hhHH---HHH-HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          117 STVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       117 ~~~~---~~~-~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      ..+.   +.+ ...++.|..++ -.. .++.+. .|.+.+++.++
T Consensus       182 ~~~~~~~~~l~~~~l~~g~~vi-D~~-~~p~~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          182 GLEDPSASPLPAELFPEEGAAV-DLV-YRPLWT-RFLREAKAKGL  223 (263)
T ss_dssp             TTTCTTCCSSCGGGSCSSSEEE-ESC-CSSSSC-HHHHHHHHTTC
T ss_pred             CCCCCCCCCCCHHHcCCCCEEE-Eee-cCCccc-HHHHHHHHCcC
Confidence            4321   111 23455666544 221 222222 35566666554

>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}

Probab=96.66  E-value=0.0061  Score=52.30  Aligned_cols=129  Identities=15%  Similarity=0.196  Sum_probs=74.0

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhhcCC----C
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVCDME----Q   84 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~--------------------~~~~eLvavvd~--~~~g~~~~~~~g~~----~   84 (161)
                      +.-.||||+|+|. |+.++.++.-+..                    .+|.++++..|.  .+.|+++.+..-..    .
T Consensus         9 ~~~~mIrVaIvGv-GnvASTlvqGv~~~r~g~~~~~G~p~~~~~p~~~~Di~vvgg~DId~~kvgk~l~eAi~~~~n~~~   87 (394)
T 3cin_A            9 HHHHMVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVD   87 (394)
T ss_dssp             ---CCEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCC
T ss_pred             cccceeEEEEecC-CHHHHHHHHHHHHHHcCCCCCccccccccCCCCCCCcEEEEEecCCcchhHHHHHHHHhhchhccc
Confidence            3456899999995 9999999887741                    135678999993  33566544332000    0


Q ss_pred             C----------------CCe-------eeeCCHHHHHhcc---cccCCccEEEEccC-----c-h---------------
Q 031341           85 P----------------LEI-------PVMSDLTMVLGSI---SQSKARAVVIDFTD-----A-S---------------  117 (161)
Q Consensus        85 ~----------------~~i-------~v~~dl~~~l~~~---~~~~~~DVVIDfT~-----p-~---------------  117 (161)
                      +                .+.       .-..++.+.++++   -++.+.||||...+     | .               
T Consensus        88 ~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~i~~~~k~~~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~  167 (394)
T 3cin_A           88 SLTSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKE  167 (394)
T ss_dssp             CCSSCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTT
T ss_pred             cccCccccccCcccccccCcCccccchhhhhhHHHhHHHHHHHhhhccceeEeeecccccCCCCCCHHHHHHHhhccccc
Confidence            0                000       0001111111110   02346789998431     1 1               


Q ss_pred             ---hHHHHHHHHH-----HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          118 ---TVYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       118 ---~~~~~~~~al-----~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                         ...-++..|+     +.|++.|-++|-+... ...+.+++++.++...|
T Consensus       168 ~i~as~~YA~AAl~~aa~~aG~~fvN~~P~~ia~-~P~~~ela~~~gvpi~G  218 (394)
T 3cin_A          168 RLTATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFG  218 (394)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEEC
T ss_pred             cCChhHHHHHHHHHhhhhhcCCceecCCCccccC-cHHHHHHHHHcCCcEec
Confidence               1122344444     8999999999976543 46689999999888776

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=96.65  E-value=0.012  Score=51.49  Aligned_cols=133  Identities=14%  Similarity=0.052  Sum_probs=69.9

Q ss_pred             ceeEEeeCCCCC-----CCeeEEEEcCCCHHHHHHHHHHHh---cC-CcEEEEEEecCCC-------------------C
Q 031341           22 KRFISCSTNPPQ-----SNIKVIINGAVKEIGRAAVIAVTK---AR-GMEVAGAIDSHSV-------------------G   73 (161)
Q Consensus        22 ~~~~~~~~~~~~-----~~ikV~ViGa~G~mGr~i~~~l~~---~~-~~eLvavvd~~~~-------------------g   73 (161)
                      +|.-+|-.+..+     +|-||.|.|+||.+|...++.+.+   +| .++++|+......                   .
T Consensus        59 ~~~~~~~~~~~~~~~~~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~Nv~lL~eQ~~ef~P~~v~v~d~  138 (488)
T 3au8_A           59 KRIKLCKKDLIDIGAIKKPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIHDK  138 (488)
T ss_dssp             ------------------CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSCHHHHHHHHHHHCCSEEEESCG
T ss_pred             EEEEeccccchhhhhhhcceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCH
Confidence            345566555543     467899999999999999999988   44 5999999984211                   0


Q ss_pred             cchhhhhcCCC---CCCeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH
Q 031341           74 EDIGMVCDMEQ---PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA  150 (161)
Q Consensus        74 ~~~~~~~g~~~---~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~  150 (161)
                      ....++-....   ..++.++...+.+ .+++...++|+|+-.-.-.....-..+|+++|+.+-...-+--..--+.+.+
T Consensus       139 ~~~~~L~~~l~~~~~~~~~v~~G~egl-~e~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~IALANKESLV~aG~Lv~~  217 (488)
T 3au8_A          139 SVYEELKELVKNIKDYKPIILCGDEGM-KEICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALANKESIVSAGFFLKK  217 (488)
T ss_dssp             GGTHHHHTGGGGSTTCCCEEEEHHHHH-HHHHHCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcCCCceEEeCHHHH-HHHhcCCCCCEEEEccccHhHHHHHHHHHHCCCcEEEecchhhhhchHHHHH
Confidence            00001100000   1123333222222 1111225689999555555667778889999999988542110112235566


Q ss_pred             Hhhhc
Q 031341          151 FCDKA  155 (161)
Q Consensus       151 ~A~~~  155 (161)
                      ++++.
T Consensus       218 ~a~~~  222 (488)
T 3au8_A          218 LLNIH  222 (488)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            66654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.62  E-value=0.0034  Score=53.71  Aligned_cols=65  Identities=15%  Similarity=0.099  Sum_probs=44.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. .-++++. ++|+.........      ..|+..+.++++++.      ..|+|+...+
T Consensus       192 ktvGIIG-lG~IG~~vA~~l~-a~G~~V~-~~d~~~~~~~~~~------~~G~~~~~~l~ell~------~aDvV~l~~P  256 (393)
T 2nac_A          192 MHVGTVA-AGRIGLAVLRRLA-PFDVHLH-YTDRHRLPESVEK------ELNLTWHATREDMYP------VCDVVTLNCP  256 (393)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHG-GGTCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHGG------GCSEEEECSC
T ss_pred             CEEEEEe-ECHHHHHHHHHHH-hCCCEEE-EEcCCccchhhHh------hcCceecCCHHHHHh------cCCEEEEecC
Confidence            6899999 6999999999987 4578866 5665322111111      234444568999885      6999996654

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=96.61  E-value=0.011  Score=52.78  Aligned_cols=36  Identities=22%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+++|.|.|++|.+|+.+++.+.+.++.+++++..+
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~  349 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG  349 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESC
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            458999999999999999999987778998877653

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.61  E-value=0.0036  Score=52.13  Aligned_cols=63  Identities=11%  Similarity=0.118  Sum_probs=43.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++. ++|+.........      ..++. +.++++++.      ..|+|+...
T Consensus       146 ~tvGIIG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~~~~~~~~------~~g~~-~~~l~ell~------~aDvV~l~~  208 (330)
T 4e5n_A          146 ATVGFLG-MGAIGLAMADRLQ-GWGATLQ-YHEAKALDTQTEQ------RLGLR-QVACSELFA------SSDFILLAL  208 (330)
T ss_dssp             CEEEEEC-CSHHHHHHHHHTT-TSCCEEE-EECSSCCCHHHHH------HHTEE-ECCHHHHHH------HCSEEEECC
T ss_pred             CEEEEEe-eCHHHHHHHHHHH-HCCCEEE-EECCCCCcHhHHH------hcCce-eCCHHHHHh------hCCEEEEcC
Confidence            7999999 6999999999876 5688865 5675431111111      12333 358999986      689999554

>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*

Probab=96.61  E-value=0.013  Score=50.23  Aligned_cols=127  Identities=15%  Similarity=0.208  Sum_probs=79.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHh--cC------------------CcEEEEEEec--CCCCcchhhhhcCC----CC-
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTK--AR------------------GMEVAGAIDS--HSVGEDIGMVCDME----QP-   85 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~--~~------------------~~eLvavvd~--~~~g~~~~~~~g~~----~~-   85 (161)
                      --|+||.|+| -|+..+.+++-+..  ..                  +.|+||..|.  .+.|+++.+..-..    .+ 
T Consensus        11 ~~~~~~~~~G-vGn~ASslvqGie~yk~~~~~~~Gl~~~~~~~y~~~DievvaafDVd~~KVGkdl~eai~~~pn~Vp~~   89 (394)
T 1vjp_A           11 HHMVKVLILG-QGYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSL   89 (394)
T ss_dssp             -CCEEEEEEC-CSHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCC
T ss_pred             hheeeeEEEE-ehHHHHHHHHHHHHHHcCCCCCccccchhccCCCcCceEEEEEEeccccccCCcHHHHHhhCcCCCCcc
Confidence            3579999999 59999999876542  21                  2799999993  45677765542110    01 


Q ss_pred             -CCeeee-----C----------------CHHHHHhccc---ccCCccEEEEcc------Cch-----------------
Q 031341           86 -LEIPVM-----S----------------DLTMVLGSIS---QSKARAVVIDFT------DAS-----------------  117 (161)
Q Consensus        86 -~~i~v~-----~----------------dl~~~l~~~~---~~~~~DVVIDfT------~p~-----------------  117 (161)
                       .++.+.     +                +.++..+++.   ++.++||||...      ...                 
T Consensus        90 l~~V~V~~G~~ldg~~~~~~~~~~~~e~~s~~e~v~~vv~~lk~~~~DVvIn~~STE~~~p~gs~~~l~~ai~~~~~~~i  169 (394)
T 1vjp_A           90 TSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERL  169 (394)
T ss_dssp             SSCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTC
T ss_pred             cCCCEEEeccccCcccccchhhhccccccchhhHHHHHHHHHHHcCCCEEEEecCccCCCCCCCHHHHHHHHhcCCCCcc
Confidence             122211     0                1111111110   346899999876      221                 


Q ss_pred             -hHHHHHHHHHH-----cCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          118 -TVYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       118 -~~~~~~~~al~-----~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                       ...-++.+|++     .|++.|-++|.+.. ....+.++++++++...|
T Consensus       170 ~aS~~YA~AAl~~~~~~aG~~fVN~~P~~ia-~~P~~~ela~~~gvpi~G  218 (394)
T 1vjp_A          170 TATQVYAYAAALYANKRGGAAFVNVIPTFIA-NDPAFVELAKENNLVVFG  218 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHTCEEEEECSSSCST-TCHHHHHHHHHTTEEEEC
T ss_pred             ChHHHHHHHHHhhccccCCcceEecCCcccc-CCHHHHHHHHHcCCCEEc
Confidence             22346788999     99999999986542 235689999999888776

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.60  E-value=0.018  Score=47.29  Aligned_cols=88  Identities=17%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVV  110 (161)
                      .|.||.++|. |.+|.. +++.+ ...|.++. +.|.... .+..+.+   .+.|++++  .+.+.+..     .++|+|
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L-~~~G~~V~-~~D~~~~-~~~~~~L---~~~gi~v~~g~~~~~l~~-----~~~d~v   70 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIA-KEAGFEVS-GCDAKMY-PPMSTQL---EALGIDVYEGFDAAQLDE-----FKADVY   70 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHH-HHTTCEEE-EEESSCC-TTHHHHH---HHTTCEEEESCCGGGGGS-----CCCSEE
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHH-HhCCCEEE-EEcCCCC-cHHHHHH---HhCCCEEECCCCHHHcCC-----CCCCEE
Confidence            4679999995 999996 66655 47788865 6775321 1111111   13466665  33444330     168988


Q ss_pred             EEccC--chhHHHHHHHHHHcCCcEEE
Q 031341          111 IDFTD--ASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       111 IDfT~--p~~~~~~~~~al~~g~~vVi  135 (161)
                      | .|+  |.. .+.+..|.++|++++.
T Consensus        71 V-~Spgi~~~-~p~~~~a~~~gi~v~~   95 (326)
T 3eag_A           71 V-IGNVAKRG-MDVVEAILNLGLPYIS   95 (326)
T ss_dssp             E-ECTTCCTT-CHHHHHHHHTTCCEEE
T ss_pred             E-ECCCcCCC-CHHHHHHHHcCCcEEe
Confidence            8 442  332 3455667788888654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.55  E-value=0.006  Score=50.72  Aligned_cols=104  Identities=13%  Similarity=0.023  Sum_probs=60.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. .-++++. ++|+... ....+       . +...+++++++.      ..|+|+...+
T Consensus       147 ~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~-~~~~~-------~-~~~~~~l~ell~------~aDvV~l~~p  208 (333)
T 1j4a_A          147 QVVGVVG-TGHIGQVFMQIME-GFGAKVI-TYDIFRN-PELEK-------K-GYYVDSLDDLYK------QADVISLHVP  208 (333)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-HHHHH-------T-TCBCSCHHHHHH------HCSEEEECSC
T ss_pred             CEEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-hhHHh-------h-CeecCCHHHHHh------hCCEEEEcCC
Confidence            6899999 6999999999987 4578865 5665431 11111       1 222358999886      6899996654


Q ss_pred             chh-HH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          116 AST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       116 p~~-~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ... ..    +.....++.|.-+|--..|- .-+.+.|.++.++..+-
T Consensus       209 ~~~~t~~li~~~~l~~mk~ga~lIn~arg~-~vd~~aL~~aL~~g~i~  255 (333)
T 1j4a_A          209 DVPANVHMINDESIAKMKQDVVIVNVSRGP-LVDTDAVIRGLDSGKIF  255 (333)
T ss_dssp             CCGGGTTCBSHHHHHHSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEE
T ss_pred             CcHHHHHHHhHHHHhhCCCCcEEEECCCCc-ccCHHHHHHHHHhCCce
Confidence            221 11    22334455555444333332 22234566666555443

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=96.55  E-value=0.0064  Score=47.21  Aligned_cols=85  Identities=18%  Similarity=0.241  Sum_probs=51.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||.|.|++|.+|+.+++.+. . +.+++++..+... .     .++  ..++.-.+++++++..    .++|+||.++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~r~~~~-~-----~~~--~~Dl~~~~~~~~~~~~----~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLS-E-RHEVIKVYNSSEI-Q-----GGY--KLDLTDFPRLEDFIIK----KRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHT-T-TSCEEEEESSSCC-T-----TCE--ECCTTSHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHh-c-CCeEEEecCCCcC-C-----CCc--eeccCCHHHHHHHHHh----cCCCEEEECCc
Confidence            489999999999999999997 3 6888866543211 0     000  1121112234555541    25999998763


Q ss_pred             ch------------------hHHHHHHHHHHcCCcEE
Q 031341          116 AS------------------TVYDNVKQATAFGMRSV  134 (161)
Q Consensus       116 p~------------------~~~~~~~~al~~g~~vV  134 (161)
                      ..                  .....+..+.+.|.++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv  103 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIV  103 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEE
Confidence            21                  12345566777777766

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.55  E-value=0.011  Score=51.79  Aligned_cols=112  Identities=12%  Similarity=0.110  Sum_probs=73.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCc---chhhhhc-----------CCCCC-CeeeeCCHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGE---DIGMVCD-----------MEQPL-EIPVMSDLT   95 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-----~~~g~---~~~~~~g-----------~~~~~-~i~v~~dl~   95 (161)
                      .||+|.| +|++|+..++.+. ..+..++++.|+     +..|.   ++..+..           ..... +....+ .+
T Consensus       253 ~~vaVqG-~GnVG~~~a~~L~-~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~-~~  329 (470)
T 2bma_A          253 QTAVVSG-SGNVALYCVQKLL-HLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFP-NE  329 (470)
T ss_dssp             CEEEEEC-SSHHHHHHHHHHH-HTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECS-SC
T ss_pred             CEEEEEC-CcHHHHHHHHHHH-HCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEec-Cc
Confidence            6899999 6999999999886 569999999995     24455   2222211           10000 222222 24


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +++.     .++|+++-++.++.. .+++...++++..+|++-.  .++++..+.|    ++.+|++
T Consensus       330 ~~~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~~L----~~rGIl~  387 (470)
T 2bma_A          330 KPWG-----VPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLF----KSNNIIY  387 (470)
T ss_dssp             CTTS-----SCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHHHHH----HHTTCEE
T ss_pred             Ceee-----cCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHHHHH----HHCCcEE
Confidence            4454     589999988876655 5788888899999999864  3566654333    3445554

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.54  E-value=0.0076  Score=47.29  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=28.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .|+||.|.|+ |.+|+.+++.+.+. +.+++++..+
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r~   37 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSRN   37 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGG-TCEEEEEESC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEcC
Confidence            3589999997 99999999999854 8898887664

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.53  E-value=0.0018  Score=54.94  Aligned_cols=104  Identities=7%  Similarity=0.118  Sum_probs=61.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. ..+++++ ++|++.  ..+.++..   .++... .+.++++.     .++|+++-+..
T Consensus       174 ktV~V~G-~G~VG~~~A~~L~-~~GakVv-v~D~~~--~~l~~~a~---~~ga~~-v~~~~ll~-----~~~DIvip~a~  239 (364)
T 1leh_A          174 LAVSVQG-LGNVAKALCKKLN-TEGAKLV-VTDVNK--AAVSAAVA---EEGADA-VAPNAIYG-----VTCDIFAPCAL  239 (364)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHHH---HHCCEE-CCGGGTTT-----CCCSEEEECSC
T ss_pred             CEEEEEC-chHHHHHHHHHHH-HCCCEEE-EEcCCH--HHHHHHHH---HcCCEE-EChHHHhc-----cCCcEeeccch
Confidence            6899999 5999999999987 5688988 888642  12222221   123222 25556654     47899986654


Q ss_pred             chhHH-HHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCeee
Q 031341          116 ASTVY-DNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMVS  159 (161)
Q Consensus       116 p~~~~-~~~~~al~~g~~vVigttg~--~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+... +++.   ..|..+|++.+..  +.++   ..++.++.+|++
T Consensus       240 ~~~I~~~~~~---~lg~~iV~e~An~p~t~~e---a~~~L~~~Gi~~  280 (364)
T 1leh_A          240 GAVLNDFTIP---QLKAKVIAGSADNQLKDPR---HGKYLHELGIVY  280 (364)
T ss_dssp             SCCBSTTHHH---HCCCSEECCSCSCCBSSHH---HHHHHHHHTCEE
T ss_pred             HHHhCHHHHH---hCCCcEEEeCCCCCcccHH---HHHHHHhCCCEE
Confidence            44332 3333   2377888876632  2222   334445555554

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.53  E-value=0.0093  Score=48.79  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=28.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLE-KGYEVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHH-CCCEEEEEECC
Confidence            5899999999999999999985 57898876653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.52  E-value=0.0068  Score=52.87  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=26.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      +.||+|+|+ |.||..++..+. ..+++++ ++|++
T Consensus        54 i~kVaVIGa-G~MG~~IA~~la-~aG~~V~-l~D~~   86 (460)
T 3k6j_A           54 VNSVAIIGG-GTMGKAMAICFG-LAGIETF-LVVRN   86 (460)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCeEE-EEECc
Confidence            478999995 999999999887 5688865 56754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.52  E-value=0.0098  Score=53.69  Aligned_cols=96  Identities=14%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchhhh-----hcCCCCCCeeeeC--
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIGMV-----CDMEQPLEIPVMS--   92 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~~~-----~g~~~~~~i~v~~--   92 (161)
                      -||.|+|+ |..|..+++.|. ..|+.=+.++|.+..                |++-.+.     ..+.....+..+.  
T Consensus       327 arVLIVGa-GGLGs~vA~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~  404 (615)
T 4gsl_A          327 TKVLLLGA-GTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS  404 (615)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeecc
Confidence            69999996 999999999987 567877778885321                2211111     0110001121111  


Q ss_pred             -------------------CHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCCC
Q 031341           93 -------------------DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPH  139 (161)
Q Consensus        93 -------------------dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigttg  139 (161)
                                         ++++.+.      +.|+|||++. +++-...-..|.++++|+|.+..|
T Consensus       405 Ipm~gh~v~~e~~~~l~~~~l~~ll~------~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aalG  465 (615)
T 4gsl_A          405 IPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALG  465 (615)
T ss_dssp             CCCTTCCCSCHHHHHHHHHHHHHHHH------HCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEEEC
T ss_pred             ccccCccccchhhhcCCHHHHHHHhh------cCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEEcc
Confidence                               2334454      6899999995 444456668899999999876433

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.52  E-value=0.0026  Score=52.71  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=41.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++.+ +|+...  ...   +..   ...-..++++++.      ..|+|+-..
T Consensus       140 ~tvGIiG-~G~IG~~vA~~l~-~~G~~V~~-~dr~~~--~~~---~~~---~~~~~~~l~ell~------~aDiV~l~~  201 (315)
T 3pp8_A          140 FSVGIMG-AGVLGAKVAESLQ-AWGFPLRC-WSRSRK--SWP---GVE---SYVGREELRAFLN------QTRVLINLL  201 (315)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHH-TTTCCEEE-EESSCC--CCT---TCE---EEESHHHHHHHHH------TCSEEEECC
T ss_pred             CEEEEEe-eCHHHHHHHHHHH-HCCCEEEE-EcCCch--hhh---hhh---hhcccCCHHHHHh------hCCEEEEec
Confidence            7999999 6999999999987 55898775 454321  110   000   0011257888886      689998544

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.50  E-value=0.006  Score=51.28  Aligned_cols=93  Identities=19%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             cccccccccccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC-----CCc--chhh
Q 031341           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS-----VGE--DIGM   78 (161)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~-----eLvavvd~~~-----~g~--~~~~   78 (161)
                      |.||---|+++|    +-.+....++||+|+||+|++|..++-.|...+=+     .-+..+|...     .|.  ++..
T Consensus         4 ~~~~~~~~~~~~----~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~   79 (345)
T 4h7p_A            4 HHHHHMGTLEAQ----TQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELED   79 (345)
T ss_dssp             ----------------------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH
T ss_pred             cccccccccccc----ccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhh
Confidence            445555678877    33445556799999999999999998877654432     1245788432     111  2221


Q ss_pred             hhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           79 VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        79 ~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      . .......+.+.++..+.+.      ++|+||...
T Consensus        80 ~-~~~~~~~~~~~~~~~~a~~------~advVvi~a  108 (345)
T 4h7p_A           80 C-AFPLLDKVVVTADPRVAFD------GVAIAIMCG  108 (345)
T ss_dssp             T-TCTTEEEEEEESCHHHHTT------TCSEEEECC
T ss_pred             c-CccCCCcEEEcCChHHHhC------CCCEEEECC
Confidence            1 1111123556788888875      899988654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.50  E-value=0.0087  Score=49.95  Aligned_cols=63  Identities=16%  Similarity=0.188  Sum_probs=43.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. .-++++. ++|+... .....      ..|+. +.++++++.      ..|+|+...+
T Consensus       166 ~tvgIIG-lG~IG~~vA~~l~-~~G~~V~-~~d~~~~-~~~~~------~~g~~-~~~l~ell~------~aDvV~l~~P  228 (335)
T 2g76_A          166 KTLGILG-LGRIGREVATRMQ-SFGMKTI-GYDPIIS-PEVSA------SFGVQ-QLPLEEIWP------LCDFITVHTP  228 (335)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSSC-HHHHH------HTTCE-ECCHHHHGG------GCSEEEECCC
T ss_pred             CEEEEEe-ECHHHHHHHHHHH-HCCCEEE-EECCCcc-hhhhh------hcCce-eCCHHHHHh------cCCEEEEecC
Confidence            6899999 6999999999987 5578865 5665421 11111      23333 358999885      6999996654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.49  E-value=0.011  Score=48.62  Aligned_cols=56  Identities=18%  Similarity=0.180  Sum_probs=28.0

Q ss_pred             cccccccccceeEEe--eCC-CCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           13 HHISQNVKAKRFISC--STN-PPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        13 ~~~~~~~~~~~~~~~--~~~-~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ||-|....-.|-|.-  |.- ..|.+   -||.|+|+ |..|..+++.|. ..|+-=+.++|.+
T Consensus         8 ~~~~~~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGa-GGlGs~va~~La-~aGVG~i~lvD~D   69 (292)
T 3h8v_A            8 HHHSSGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGV-GGVGSVTAEMLT-RCGIGKLLLFDYD   69 (292)
T ss_dssp             ------------------------CGGGGCEEEEECC-SHHHHHHHHHHH-HHTCSEEEEECCC
T ss_pred             ccccCCCCchHhhcccccChHHHHHHHhCCeEEEECc-CHHHHHHHHHHH-HcCCCEEEEECCC
Confidence            455556666665543  333 45554   69999995 999999999998 4466666788853

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.48  E-value=0.01  Score=50.84  Aligned_cols=100  Identities=17%  Similarity=0.045  Sum_probs=58.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .++||+| +|+||+.+++.+. .-|+++. ++|+... ..         ..++....++++++.      .+|+|+-..+
T Consensus       146 ktlGiIG-lG~IG~~vA~~l~-~~G~~V~-~~d~~~~-~~---------~~~~~~~~~l~ell~------~aDvV~l~~P  206 (404)
T 1sc6_A          146 KKLGIIG-YGHIGTQLGILAE-SLGMYVY-FYDIENK-LP---------LGNATQVQHLSDLLN------MSDVVSLHVP  206 (404)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-CC---------CTTCEECSCHHHHHH------HCSEEEECCC
T ss_pred             CEEEEEe-ECHHHHHHHHHHH-HCCCEEE-EEcCCch-hc---------cCCceecCCHHHHHh------cCCEEEEccC
Confidence            6899999 7999999999887 5689965 5775321 10         112344568999986      6899995543


Q ss_pred             chh-H---H-HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341          116 AST-V---Y-DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (161)
Q Consensus       116 p~~-~---~-~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~  155 (161)
                      ... .   . +.....++.|.-+|--.+|--. +.+.|.++.++.
T Consensus       207 ~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~v-d~~aL~~aL~~g  250 (404)
T 1sc6_A          207 ENPSTKNMMGAKEISLMKPGSLLINASRGTVV-DIPALADALASK  250 (404)
T ss_dssp             SSTTTTTCBCHHHHHHSCTTEEEEECSCSSSB-CHHHHHHHHHTT
T ss_pred             CChHHHHHhhHHHHhhcCCCeEEEECCCChHH-hHHHHHHHHHcC
Confidence            221 1   1 2233445556555433333212 223455544443

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.47  E-value=0.0046  Score=50.74  Aligned_cols=72  Identities=13%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||.|.|++|.+|+.+++.+.+....+++.+ |+..   +               .+++++++.      ++|+||.++.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~-d~~~---d---------------~~~l~~~~~------~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEV-HRQT---K---------------EEELESALL------KADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEC-CTTC---C---------------HHHHHHHHH------HCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEE-CCCC---C---------------HHHHHHHhc------cCCEEEECCc
Confidence            6899999999999999999987654476533 3310   0               124555664      5888887652


Q ss_pred             c--------------hhHHHHHHHHHHcCCc
Q 031341          116 A--------------STVYDNVKQATAFGMR  132 (161)
Q Consensus       116 p--------------~~~~~~~~~al~~g~~  132 (161)
                      +              ......+..+.++|+.
T Consensus        56 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~   86 (369)
T 3st7_A           56 VNRPEHDKEFSLGNVSYLDHVLDILTRNTKK   86 (369)
T ss_dssp             SBCTTCSTTCSSSCCBHHHHHHHHHTTCSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            1              1234456677777744

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=96.46  E-value=0.036  Score=44.27  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=28.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd   68 (161)
                      |||.|.|++|.+|+.+++.+.+.. +.+++++..
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r   37 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDK   37 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            689999999999999999998764 588887654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.46  E-value=0.005  Score=49.86  Aligned_cols=85  Identities=18%  Similarity=0.159  Sum_probs=51.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+..  .+.....    +.++..  +.++++++.      .+|+|+.
T Consensus       155 g~~v~IiG-~G~iG~~~a~~l~-~~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDvVi~  219 (293)
T 3d4o_A          155 GANVAVLG-LGRVGMSVARKFA-ALGAKVK-VGARES--DLLARIA----EMGMEPFHISKAAQELR------DVDVCIN  219 (293)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EEESSH--HHHHHHH----HTTSEEEEGGGHHHHTT------TCSEEEE
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-hCCCEEE-EEECCH--HHHHHHH----HCCCeecChhhHHHHhc------CCCEEEE
Confidence            36899999 5999999999887 4567755 566532  1111111    123322  357778774      7999997


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE
Q 031341          113 FTDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vV  134 (161)
                      .+++....+.....++.|.-+|
T Consensus       220 ~~p~~~i~~~~l~~mk~~~~li  241 (293)
T 3d4o_A          220 TIPALVVTANVLAEMPSHTFVI  241 (293)
T ss_dssp             CCSSCCBCHHHHHHSCTTCEEE
T ss_pred             CCChHHhCHHHHHhcCCCCEEE
Confidence            7754333233334455554444

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.43  E-value=0.0034  Score=50.97  Aligned_cols=85  Identities=12%  Similarity=0.112  Sum_probs=51.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+..  .+...+.    +.++..  +.++++++.      .+|+|+.
T Consensus       157 g~~v~IiG-~G~iG~~~a~~l~-~~G~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDvVi~  221 (300)
T 2rir_A          157 GSQVAVLG-LGRTGMTIARTFA-ALGANVK-VGARSS--AHLARIT----EMGLVPFHTDELKEHVK------DIDICIN  221 (300)
T ss_dssp             TSEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EEESSH--HHHHHHH----HTTCEEEEGGGHHHHST------TCSEEEE
T ss_pred             CCEEEEEc-ccHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHHH----HCCCeEEchhhHHHHhh------CCCEEEE
Confidence            46899999 5999999999987 4578755 566542  1111111    123322  357888774      7999997


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE
Q 031341          113 FTDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vV  134 (161)
                      .+++....+.....++.|.-+|
T Consensus       222 ~~p~~~i~~~~~~~mk~g~~li  243 (300)
T 2rir_A          222 TIPSMILNQTVLSSMTPKTLIL  243 (300)
T ss_dssp             CCSSCCBCHHHHTTSCTTCEEE
T ss_pred             CCChhhhCHHHHHhCCCCCEEE
Confidence            7765433232333344454443

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.43  E-value=0.013  Score=48.74  Aligned_cols=103  Identities=14%  Similarity=0.044  Sum_probs=60.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. .-|+++. ++|+.... ...       .. + -+.++++++.      ..|+|+...+
T Consensus       146 ~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~~-~~~-------~~-~-~~~~l~ell~------~aDvV~~~~P  206 (333)
T 1dxy_A          146 QTVGVMG-TGHIGQVAIKLFK-GFGAKVI-AYDPYPMK-GDH-------PD-F-DYVSLEDLFK------QSDVIDLHVP  206 (333)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCCS-SCC-------TT-C-EECCHHHHHH------HCSEEEECCC
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCcch-hhH-------hc-c-ccCCHHHHHh------cCCEEEEcCC
Confidence            6899999 6999999999887 5589865 56653211 110       11 2 2458999886      6899996553


Q ss_pred             chh-H----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          116 AST-V----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       116 p~~-~----~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ... .    .+.....++.|.-+|--.+|-- -+.+.|.++.++..+-
T Consensus       207 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~g~i~  253 (333)
T 1dxy_A          207 GIEQNTHIINEAAFNLMKPGAIVINTARPNL-IDTQAMLSNLKSGKLA  253 (333)
T ss_dssp             CCGGGTTSBCHHHHHHSCTTEEEEECSCTTS-BCHHHHHHHHHTTSEE
T ss_pred             CchhHHHHhCHHHHhhCCCCcEEEECCCCcc-cCHHHHHHHHHhCCcc
Confidence            221 1    1233444555655543333321 2234566666555443

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.42  E-value=0.0066  Score=52.77  Aligned_cols=111  Identities=16%  Similarity=0.102  Sum_probs=69.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC----e--eeeCCHHHHHhcccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE----I--PVMSDLTMVLGSISQ  103 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~----i--~v~~dl~~~l~~~~~  103 (161)
                      -.||+|.| +|++|+..++.+. ..+..++++.|+.     ..|.+..++..+....+    +  ..+-+.++++.    
T Consensus       235 g~~vaVqG-fGnVG~~~a~~L~-e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~----  308 (440)
T 3aog_A          235 GARVAIQG-FGNVGNAAARAFH-DHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG----  308 (440)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT----
T ss_pred             CCEEEEec-cCHHHHHHHHHHH-HCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc----
Confidence            37899999 6999999999887 5699999999963     34444433321110000    0  11225567765    


Q ss_pred             cCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                       .++|+++.++.++.. .+++.   +-+..+|++-.  .++++..+.|.    +.+|++
T Consensus       309 -~~~DIlvPcA~~n~i~~~na~---~l~ak~VvEgAN~p~t~eA~~iL~----~~GI~~  359 (440)
T 3aog_A          309 -LPVEFLVPAALEKQITEQNAW---RIRARIVAEGANGPTTPAADDILL----EKGVLV  359 (440)
T ss_dssp             -CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHHH----HHTCEE
T ss_pred             -CCCcEEEecCCcCccchhhHH---HcCCcEEEecCccccCHHHHHHHH----HCCCEE
Confidence             589999998876544 34443   33788888754  35665544443    445554

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=96.41  E-value=0.019  Score=46.05  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=27.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CC---cEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA--RG---MEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~--~~---~eLvavvd   68 (161)
                      |||.|.|++|.+|+.+++.+.+.  ++   .+++++..
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r   38 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS   38 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEEC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEEC
Confidence            58999999999999999999864  26   88887654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.41  E-value=0.019  Score=43.87  Aligned_cols=105  Identities=18%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ee---CCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~---~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |||.|+|+ |++|+.+++.+.+ .+.+++ ++|++.  ....++..   ..++. ++   .+.+.+...  .-.++|++|
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~-~g~~v~-vid~~~--~~~~~l~~---~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLS-RKYGVV-IINKDR--ELCEEFAK---KLKATIIHGDGSHKEILRDA--EVSKNDVVV   70 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHH-TTCCEE-EEESCH--HHHHHHHH---HSSSEEEESCTTSHHHHHHH--TCCTTCEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHH---HcCCeEEEcCCCCHHHHHhc--CcccCCEEE
Confidence            68999995 9999999999874 577877 556432  11222110   12222 22   222222110  014789999


Q ss_pred             EccCchhHHHHH-HHHHH-cCCcEEEeCCCCCHHHHHHHHHH
Q 031341          112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       112 DfT~p~~~~~~~-~~al~-~g~~vVigttg~~~e~~~~L~~~  151 (161)
                      -++..+.....+ ..+.+ ++..-++... -+++..+.|.++
T Consensus        71 ~~~~~d~~n~~~~~~a~~~~~~~~iia~~-~~~~~~~~l~~~  111 (218)
T 3l4b_C           71 ILTPRDEVNLFIAQLVMKDFGVKRVVSLV-NDPGNMEIFKKM  111 (218)
T ss_dssp             ECCSCHHHHHHHHHHHHHTSCCCEEEECC-CSGGGHHHHHHH
T ss_pred             EecCCcHHHHHHHHHHHHHcCCCeEEEEE-eCcchHHHHHHC
Confidence            555444433333 34444 4655555443 334455555444

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.41  E-value=0.0029  Score=50.83  Aligned_cols=66  Identities=20%  Similarity=0.259  Sum_probs=42.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |++|+|+ |+||+.++..+.+ .+.+-+.+++++.  .+..++.   ...+...++++++++.      ++|+||..|+
T Consensus       110 ~vliiGa-Gg~a~ai~~~L~~-~G~~~I~v~nR~~--~ka~~la---~~~~~~~~~~~~~~~~------~aDiVInatp  175 (253)
T 3u62_A          110 PVVVVGA-GGAARAVIYALLQ-MGVKDIWVVNRTI--ERAKALD---FPVKIFSLDQLDEVVK------KAKSLFNTTS  175 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHH-TTCCCEEEEESCH--HHHHTCC---SSCEEEEGGGHHHHHH------TCSEEEECSS
T ss_pred             eEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HHcccCCHHHHHhhhc------CCCEEEECCC
Confidence            8999995 9999999999885 5663355677642  2222222   1233333566777664      6899886663

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.39  E-value=0.0042  Score=51.03  Aligned_cols=93  Identities=16%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-------CCCCeeeeCCHHHHHhcccccC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSK  105 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~--g~~-------~~~~i~v~~dl~~~l~~~~~~~  105 (161)
                      ++||+|+|+ |.||..++..+.+ .+.++. ++++..   ....+.  |..       ....+..+++++++ .      
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~-~g~~V~-~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------   69 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLAL-AGEAIN-VLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAAAL-G------   69 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHH-TTCCEE-EECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHHHH-C------
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-C------
Confidence            479999995 9999999999874 466655 444421   111110  110       01123446788764 3      


Q ss_pred             CccEEEEccCchhHHHHHHH---HHHcCCcEEEeCCCC
Q 031341          106 ARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHI  140 (161)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~---al~~g~~vVigttg~  140 (161)
                      ++|+||-++.+....+.+..   .+..+..+|+-..|+
T Consensus        70 ~~D~Vilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           70 EQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CCSEEEECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CCCEEEEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            79999955555444443332   223456666656674

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.38  E-value=0.0078  Score=42.12  Aligned_cols=104  Identities=15%  Similarity=0.143  Sum_probs=54.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ee---CCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~---~dl~~~l~~~~~~~~~DVV  110 (161)
                      +-+|+|+|+ |.+|+.+++.+.. .+.+++ ++|+..  .....+.    +.+.. +.   .+.+.+...  .-.++|+|
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHR-MGHEVL-AVDINE--EKVNAYA----SYATHAVIANATEENELLSL--GIRNFEYV   74 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCCE-EEESCH--HHHHTTT----TTCSEEEECCTTCHHHHHTT--TGGGCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HhCCEEEEeCCCCHHHHHhc--CCCCCCEE
Confidence            347999996 9999999999875 467765 455431  1111111    11221 22   233332210  00368999


Q ss_pred             EEccCch--hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH
Q 031341          111 IDFTDAS--TVYDNVKQATAFGMRSVVYVPHIQLETVSALSA  150 (161)
Q Consensus       111 IDfT~p~--~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~  150 (161)
                      |.++..+  .....+..+.+.+.+-++-.. -+.+..+.|.+
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l~~  115 (144)
T 2hmt_A           75 IVAIGANIQASTLTTLLLKELDIPNIWVKA-QNYYHHKVLEK  115 (144)
T ss_dssp             EECCCSCHHHHHHHHHHHHHTTCSEEEEEC-CSHHHHHHHHH
T ss_pred             EECCCCchHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHHH
Confidence            9777542  233455566677766444332 23333444544

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.37  E-value=0.027  Score=44.73  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++. +++
T Consensus        45 k~vlITGasggIG~~la~~L~-~~G~~V~~-~~r   76 (285)
T 2c07_A           45 KVALVTGAGRGIGREIAKMLA-KSVSHVIC-ISR   76 (285)
T ss_dssp             CEEEEESTTSHHHHHHHHHHT-TTSSEEEE-EES
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HcCCEEEE-EcC
Confidence            469999999999999999987 56888876 554

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=96.37  E-value=0.0088  Score=47.52  Aligned_cols=70  Identities=10%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      ||.|.|++|.+|+.+++.+.+. .+.+++++..+....... .+.    ..++.-.+++++++..    .++|+||.++.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~~~----~~D~~d~~~~~~~~~~----~~~d~vih~a~   71 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGI-KFI----TLDVSNRDEIDRAVEK----YSIDAIFHLAG   71 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTC-CEE----ECCTTCHHHHHHHHHH----TTCCEEEECCC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCc-eEE----EecCCCHHHHHHHHhh----cCCcEEEECCc
Confidence            6899999999999999999876 478877665432110000 000    1111111234455542    37999998763

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.36  E-value=0.013  Score=48.11  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=27.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd   68 (161)
                      .+|.|.|++|.+|+.+++.+.+.++. +++++..
T Consensus        22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r   55 (344)
T 2gn4_A           22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR   55 (344)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            68999999999999999999876566 7776544

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.36  E-value=0.012  Score=46.71  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=27.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   32 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDN   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHh-CCCEEEEEeC
Confidence            5899999999999999999984 5788876654

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=96.34  E-value=0.011  Score=47.85  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=27.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCC-----cEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARG-----MEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~-----~eLvavvd~   69 (161)
                      +||.|.|++|.+|+.+++.+.+ .+     .+++++..+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~-~g~~~~~~~V~~~~r~   39 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPL-ADTPGGPWKVYGVARR   39 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTS-TTCTTCSEEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHh-CCCCCCceEEEEEeCC
Confidence            6899999999999999999875 45     888876653

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=96.34  E-value=0.024  Score=46.53  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=27.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |+|.|.|++|.+|+.+++.+.+..+.+++++..
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r   35 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEec
Confidence            599999999999999999998345788887654

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=96.34  E-value=0.015  Score=46.17  Aligned_cols=31  Identities=35%  Similarity=0.479  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      |||.|.|++|.+|+.+++.+. ..+.+++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~-~~G~~V~~~~   31 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLL-ARGLEVAVLD   31 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEEC
T ss_pred             CEEEEEeCCcHHHHHHHHHHH-HCCCEEEEEE
Confidence            589999999999999999987 4688887654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.33  E-value=0.02  Score=47.99  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=55.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchhhhh-----cCCCCCCeeee-C-
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIGMVC-----DMEQPLEIPVM-S-   92 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~~~~-----g~~~~~~i~v~-~-   92 (161)
                      -||.|+|+ |..|+.+++.|. ..|+.=+.++|.+..                |++..+.+     .+.....+..+ . 
T Consensus       119 ~~VlvvG~-GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  196 (353)
T 3h5n_A          119 AKVVILGC-GGIGNHVSVILA-TSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN  196 (353)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-hCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence            68999995 999999999988 557766678885321                11100000     00000111111 1 


Q ss_pred             -----CHHHHHhcccccCCccEEEEccC-ch-hHHHHHHHHHHcCCcEEEe
Q 031341           93 -----DLTMVLGSISQSKARAVVIDFTD-AS-TVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus        93 -----dl~~~l~~~~~~~~~DVVIDfT~-p~-~~~~~~~~al~~g~~vVig  136 (161)
                           ++++ +      .++|+|||++. +. .-...-..|.++|+|+|.+
T Consensus       197 i~~~~~~~~-~------~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~  240 (353)
T 3h5n_A          197 INDYTDLHK-V------PEADIWVVSADHPFNLINWVNKYCVRANQPYINA  240 (353)
T ss_dssp             CCSGGGGGG-S------CCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred             cCchhhhhH-h------ccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEE
Confidence                 1333 3      37999999884 44 3344557899999999954

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.32  E-value=0.017  Score=46.48  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=27.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   34 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLE-AGYLPVVIDN   34 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEec
Confidence            6899999999999999999985 5788887654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.31  E-value=0.014  Score=40.73  Aligned_cols=96  Identities=14%  Similarity=0.251  Sum_probs=50.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ee---CCHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~---~dl~~~l~~~~~~~~~DVV  110 (161)
                      .+||+|+|+ |++|+.+++.+.+ .+.+++ ++|++.  .....+..   ..++. +.   .+.+.+...  .-.++|+|
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~~---~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSE-KGHDIV-LIDIDK--DICKKASA---EIDALVINGDCTKIKTLEDA--GIEDADMY   73 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHHH---HCSSEEEESCTTSHHHHHHT--TTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHH---hcCcEEEEcCCCCHHHHHHc--CcccCCEE
Confidence            479999995 9999999999875 578866 556432  11111110   12332 22   233332210  01378999


Q ss_pred             EEccCchhHHHHH-HHHHHcC-CcEEEeCCCC
Q 031341          111 IDFTDASTVYDNV-KQATAFG-MRSVVYVPHI  140 (161)
Q Consensus       111 IDfT~p~~~~~~~-~~al~~g-~~vVigttg~  140 (161)
                      |.++........+ ..+.+.+ .++|+-+.+.
T Consensus        74 i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~  105 (140)
T 1lss_A           74 IAVTGKEEVNLMSSLLAKSYGINKTIARISEI  105 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred             EEeeCCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence            9776544333322 3444444 3566555443

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.31  E-value=0.027  Score=46.36  Aligned_cols=34  Identities=18%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +++|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~   38 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHS   38 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECC
Confidence            36899999999999999999985 67888876653

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.31  E-value=0.018  Score=45.45  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=29.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+.||.|.|++|.+|+.+++.+.+. +.+++++..+
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   40 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVAS-GEEVTVLDDL   40 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHC-CCEEEEEecC
Confidence            3579999999999999999999854 7888876553

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.30  E-value=0.0046  Score=43.98  Aligned_cols=32  Identities=31%  Similarity=0.439  Sum_probs=25.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |.+|.|+|+ |++|+.+++.+. ..+.+++ ++|+
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~-~~g~~V~-~id~   37 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELT-AAGKKVL-AVDK   37 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHH-HTTCCEE-EEES
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCeEE-EEEC
Confidence            568999995 999999999987 4578876 4564

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=96.27  E-value=0.007  Score=47.27  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=26.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r   34 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGT-LAHEVRLSDI   34 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGG-TEEEEEECCS
T ss_pred             CceEEEECCCCHHHHHHHHHHHh-CCCEEEEEeC
Confidence            35899999999999999999874 4788776544

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.27  E-value=0.013  Score=46.30  Aligned_cols=59  Identities=24%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             eecccccccccccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |-|.||-+.|-|..+=.+...-.....-+|.|.|++|.+|+.+++.+. ..|.+++.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~m~~~~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r   60 (260)
T 3un1_A            2 HHHHHHSSGVDLGTENLYFQSMMRNQQKVVVITGASQGIGAGLVRAYR-DRNYRVVATSR   60 (260)
T ss_dssp             ------------------CHHHHHTTCCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CcccCcchhhhhhhhhhhhhhhhCcCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeC
Confidence            445666666655544333322111122468999999999999999997 55888776544

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.27  E-value=0.0043  Score=53.60  Aligned_cols=109  Identities=12%  Similarity=0.122  Sum_probs=59.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------CCCcchhhhhcCCCCC-------CeeeeCCHHHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------SVGEDIGMVCDMEQPL-------EIPVMSDLTMVL   98 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~----------~~g~~~~~~~g~~~~~-------~i~v~~dl~~~l   98 (161)
                      .||+|.| +|++|+..++.+. ..+..++++.|++          ..|.|..++..+....       +... -+.++++
T Consensus       213 ~~vaVqG-~GnVG~~~a~~L~-~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~-i~~~~~~  289 (421)
T 2yfq_A          213 AKIAVQG-FGNVGTFTVKNIE-RQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAER-ITDEEFW  289 (421)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHH-HTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-----------------
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceE-eCccchh
Confidence            7899999 6999999999887 5689999999965          2343333322111000       0111 1234555


Q ss_pred             hcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .     .++|+++.++.++.. .+++.   +.+..+|++..  .++++..+.|.    +++|++
T Consensus       290 ~-----~~~DIliP~A~~n~i~~~~A~---~l~ak~VvEgAN~P~t~ea~~il~----~~GI~~  341 (421)
T 2yfq_A          290 T-----KEYDIIVPAALENVITGERAK---TINAKLVCEAANGPTTPEGDKVLT----ERGINL  341 (421)
T ss_dssp             ----------CEEECSCSSCSCHHHHT---TCCCSEEECCSSSCSCHHHHHHHH----HHTCEE
T ss_pred             c-----CCccEEEEcCCcCcCCcccHH---HcCCeEEEeCCccccCHHHHHHHH----HCCCEE
Confidence            4     489999998876554 34544   33777787753  35655544443    445554

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.27  E-value=0.011  Score=51.68  Aligned_cols=100  Identities=12%  Similarity=0.108  Sum_probs=56.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc-chhh--------hh--cCCC-------CCCeeeeCCHHH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-DIGM--------VC--DMEQ-------PLEIPVMSDLTM   96 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~-~~~~--------~~--g~~~-------~~~i~v~~dl~~   96 (161)
                      +.||+|+|+ |.||..++..+. ..+++++ ++|++.... ...+        +.  |...       ...+..++|++.
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la-~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAA-SHGHQVL-LYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA   81 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHH-HTTCCEE-EECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH
Confidence            358999995 999999999987 5578765 577542110 0000        00  0000       012445677764


Q ss_pred             HHhcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHH
Q 031341           97 VLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~g~~vVigttg~~~e~  144 (161)
                       +.      ++|+||.+..++.     ....+...+..+.-+++-|.+++.++
T Consensus        82 -~~------~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~  127 (483)
T 3mog_A           82 -LA------AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITA  127 (483)
T ss_dssp             -GG------GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH
T ss_pred             -hc------CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHH
Confidence             43      7999997665442     22333344444554445566776653

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.24  E-value=0.0071  Score=49.96  Aligned_cols=89  Identities=11%  Similarity=-0.001  Sum_probs=58.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -+++|+| +|.||+.+++.+....+.+-+.+++++ ......+...  ...+  +..+ |+++++.      ++|+||-+
T Consensus       122 ~~v~iIG-aG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~--~~~g~~~~~~-~~~eav~------~aDIVi~a  190 (313)
T 3hdj_A          122 SVLGLFG-AGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIG--RRCGVPARMA-APADIAA------QADIVVTA  190 (313)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHH--HHHTSCEEEC-CHHHHHH------HCSEEEEC
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHH--HhcCCeEEEe-CHHHHHh------hCCEEEEc
Confidence            5899999 599999999999876567778899976 3333322111  0113  3345 9999986      69999966


Q ss_pred             cCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (161)
Q Consensus       114 T~p~~~~~~~-~~al~~g~~vV-igt  137 (161)
                      |+.. . +.+ ...++.|.+++ +|+
T Consensus       191 T~s~-~-pvl~~~~l~~G~~V~~vGs  214 (313)
T 3hdj_A          191 TRST-T-PLFAGQALRAGAFVGAIGS  214 (313)
T ss_dssp             CCCS-S-CSSCGGGCCTTCEEEECCC
T ss_pred             cCCC-C-cccCHHHcCCCcEEEECCC
Confidence            6432 1 111 23467788877 454

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.21  E-value=0.013  Score=46.10  Aligned_cols=33  Identities=15%  Similarity=0.121  Sum_probs=26.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+++....
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~-~G~~V~~~~r   35 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAP-MAEILRLADL   35 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGG-GEEEEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-cCCEEEEEec
Confidence            35799999999999999999874 5777765443

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.21  E-value=0.02  Score=51.59  Aligned_cols=97  Identities=12%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhhh-----cCCCCCCeeee---
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMVC-----DMEQPLEIPVM---   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~~-----g~~~~~~i~v~---   91 (161)
                      -||.|+|+ |..|..+++.|. ..|+.=+.++|.+.                .|++-.+.+     .+.....+..+   
T Consensus       328 ~kVLIVGa-GGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~  405 (598)
T 3vh1_A          328 TKVLLLGA-GTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS  405 (598)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            69999996 999999999987 66787777888431                121111110     00001112111   


Q ss_pred             ------------------CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCC
Q 031341           92 ------------------SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHI  140 (161)
Q Consensus        92 ------------------~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~g~~vVigttg~  140 (161)
                                        +++++++.      +.|+|||+|.. ++-...-..|.++++++|.+.-|+
T Consensus       406 I~~pgh~i~~~~~~~l~~~~l~~li~------~~DvVvdatDn~~tR~lin~~c~~~~~plI~aa~G~  467 (598)
T 3vh1_A          406 IPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  467 (598)
T ss_dssp             CCCSSCCCCSHHHHHHHHHHHHHHHH------HCSEEEECCSBGGGTHHHHHHHHHTTCEEEEEEECS
T ss_pred             ccccCcccccccccccCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence                              11234453      68999999854 443556678889999988764443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.19  E-value=0.013  Score=49.68  Aligned_cols=62  Identities=13%  Similarity=0.127  Sum_probs=43.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++. ++|+... .....      ..++. +.++++++.      ..|+|+-..
T Consensus       177 ktvGIIG-lG~IG~~vA~~l~-~fG~~V~-~~d~~~~-~~~~~------~~g~~-~~~l~ell~------~aDvV~l~~  238 (365)
T 4hy3_A          177 SEIGIVG-FGDLGKALRRVLS-GFRARIR-VFDPWLP-RSMLE------ENGVE-PASLEDVLT------KSDFIFVVA  238 (365)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHT-TSCCEEE-EECSSSC-HHHHH------HTTCE-ECCHHHHHH------SCSEEEECS
T ss_pred             CEEEEec-CCcccHHHHHhhh-hCCCEEE-EECCCCC-HHHHh------hcCee-eCCHHHHHh------cCCEEEEcC
Confidence            6899999 7999999999886 5588876 5665421 11111      12333 468999986      799999554

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.19  E-value=0.0041  Score=52.34  Aligned_cols=63  Identities=16%  Similarity=0.040  Sum_probs=44.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++.+ +|+..  .. ....    ..++...+++++++.      ..|+|+...
T Consensus       161 ~tvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~~--~~-~~~~----~~g~~~~~~l~ell~------~aDiV~l~~  223 (352)
T 3gg9_A          161 QTLGIFG-YGKIGQLVAGYGR-AFGMNVLV-WGREN--SK-ERAR----ADGFAVAESKDALFE------QSDVLSVHL  223 (352)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSHH--HH-HHHH----HTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CEEEEEe-ECHHHHHHHHHHH-hCCCEEEE-ECCCC--CH-HHHH----hcCceEeCCHHHHHh------hCCEEEEec
Confidence            6999999 6999999999987 45898764 56431  11 1111    235555679999986      689988554

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.19  E-value=0.033  Score=46.46  Aligned_cols=102  Identities=13%  Similarity=0.090  Sum_probs=61.4

Q ss_pred             eeCCCCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcC
Q 031341           27 CSTNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDM   82 (161)
Q Consensus        27 ~~~~~~~~---~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~-----~~g~   82 (161)
                      -|....|.   .-||.|+|+ |..|..+++.|. ..|+.=+.++|.+.                .|++-.+     +..+
T Consensus        25 l~G~~~q~~L~~~~VlivG~-GGlG~~ia~~La-~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~l  102 (346)
T 1y8q_A           25 LWGLEAQKRLRASRVLLVGL-KGLGAEIAKNLI-LAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNL  102 (346)
T ss_dssp             HHCHHHHHHHHTCEEEEECC-SHHHHHHHHHHH-HHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHT
T ss_pred             hhCHHHHHHHhCCeEEEECC-CHHHHHHHHHHH-HcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhH
Confidence            34444443   369999995 999999999998 56776666887421                1211111     0111


Q ss_pred             CCCCCeeee-CC----HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341           83 EQPLEIPVM-SD----LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (161)
Q Consensus        83 ~~~~~i~v~-~d----l~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig  136 (161)
                      .....+..+ .+    .++.+.      .+|+|||++.+... ...-..|.++++|+|.+
T Consensus       103 np~v~v~~~~~~~~~~~~~~~~------~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~  156 (346)
T 1y8q_A          103 NPMVDVKVDTEDIEKKPESFFT------QFDAVCLTCCSRDVIVKVDQICHKNSIKFFTG  156 (346)
T ss_dssp             CTTSEEEEECSCGGGCCHHHHT------TCSEEEEESCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEEEecccCcchHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            101112222 22    245553      78999998855444 45567888999999965

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.17  E-value=0.013  Score=48.69  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .+|+|+| .|+||+.+++.+. .-|+++. ++|+.... ...       .. + -+.++++++.      ..|+|+...+
T Consensus       147 ~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~~-~~~-------~~-~-~~~~l~ell~------~aDvV~~~~p  207 (331)
T 1xdw_A          147 CTVGVVG-LGRIGRVAAQIFH-GMGATVI-GEDVFEIK-GIE-------DY-C-TQVSLDEVLE------KSDIITIHAP  207 (331)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCCC-SCT-------TT-C-EECCHHHHHH------HCSEEEECCC
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCccH-HHH-------hc-c-ccCCHHHHHh------hCCEEEEecC
Confidence            6899999 6999999999887 5689865 56754311 110       11 2 2458999886      6899996543


Q ss_pred             chh-H----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          116 AST-V----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       116 p~~-~----~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ... .    .+.....++.|.-+|--.+|- .-+.+.|.++.++..+-
T Consensus       208 ~t~~t~~li~~~~l~~mk~ga~lin~srg~-~vd~~aL~~aL~~g~i~  254 (331)
T 1xdw_A          208 YIKENGAVVTRDFLKKMKDGAILVNCARGQ-LVDTEAVIEAVESGKLG  254 (331)
T ss_dssp             CCTTTCCSBCHHHHHTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEE
T ss_pred             CchHHHHHhCHHHHhhCCCCcEEEECCCcc-cccHHHHHHHHHhCCce
Confidence            221 1    122333345554444322332 12234566665554443

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.17  E-value=0.049  Score=43.35  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=25.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+
T Consensus        26 k~~lVTGas~GIG~~ia~~la-~~G~~V~~~   55 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLA-KAGANIVLN   55 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHH-HTTCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEE
Confidence            368999999999999999998 567887643

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.16  E-value=0.0088  Score=52.69  Aligned_cols=66  Identities=20%  Similarity=0.195  Sum_probs=45.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+... .....      ..|+... ++++++.      .+|+|+-.+
T Consensus       142 g~~vgIIG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~~-~~~a~------~~g~~~~-~l~e~~~------~aDvV~l~~  204 (529)
T 1ygy_A          142 GKTVGVVG-LGRIGQLVAQRIA-AFGAYVV-AYDPYVS-PARAA------QLGIELL-SLDDLLA------RADFISVHL  204 (529)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECTTSC-HHHHH------HHTCEEC-CHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-hCCCEEE-EECCCCC-hhHHH------hcCcEEc-CHHHHHh------cCCEEEECC
Confidence            37999999 6999999999987 4588876 4575431 11111      2244333 8889886      699999666


Q ss_pred             Cch
Q 031341          115 DAS  117 (161)
Q Consensus       115 ~p~  117 (161)
                      ++.
T Consensus       205 P~~  207 (529)
T 1ygy_A          205 PKT  207 (529)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            554

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.15  E-value=0.011  Score=51.01  Aligned_cols=102  Identities=15%  Similarity=0.132  Sum_probs=64.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCCe------------eeeCCHHHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI------------PVMSDLTMVL   98 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~i------------~v~~dl~~~l   98 (161)
                      .+|+|.| +|++|+..++.+. ..+..++++.|+.     ..|-|..++..+....+-            ..+.+.++++
T Consensus       211 k~vaVqG-~GnVG~~aa~~L~-e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~  288 (421)
T 1v9l_A          211 KTVAIQG-MGNVGRWTAYWLE-KMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIF  288 (421)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGG
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhh
Confidence            6899999 6999999999886 5699999999962     345454444333212221            1121335666


Q ss_pred             hcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHH
Q 031341           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSA  147 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~  147 (161)
                      .     .++|+++-++.++.. .+++.   +-+..+|++-.  .++++..+.
T Consensus       289 ~-----~~~Dil~P~A~~~~I~~~~a~---~l~ak~V~EgAN~p~t~~a~~~  332 (421)
T 1v9l_A          289 K-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAERI  332 (421)
T ss_dssp             G-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHHH
T ss_pred             c-----CCccEEEecCcCCccchhhHH---HcCceEEEecCCCcCCHHHHHH
Confidence            5     589999987765544 23333   33888888854  456554433

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.15  E-value=0.012  Score=42.11  Aligned_cols=109  Identities=8%  Similarity=0.048  Sum_probs=56.5

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCH--HHHHhcccccCCc
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKAR  107 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl--~~~l~~~~~~~~~  107 (161)
                      |...+-+|.|+| .|++|+.+++.+. ..+.+++ ++|++.  .....+.    +.++.+ +.|.  ++.+.+. .-.++
T Consensus         3 ~~~~~~~viIiG-~G~~G~~la~~L~-~~g~~v~-vid~~~--~~~~~~~----~~g~~~i~gd~~~~~~l~~a-~i~~a   72 (140)
T 3fwz_A            3 AVDICNHALLVG-YGRVGSLLGEKLL-ASDIPLV-VIETSR--TRVDELR----ERGVRAVLGNAANEEIMQLA-HLECA   72 (140)
T ss_dssp             CCCCCSCEEEEC-CSHHHHHHHHHHH-HTTCCEE-EEESCH--HHHHHHH----HTTCEEEESCTTSHHHHHHT-TGGGC
T ss_pred             cccCCCCEEEEC-cCHHHHHHHHHHH-HCCCCEE-EEECCH--HHHHHHH----HcCCCEEECCCCCHHHHHhc-CcccC
Confidence            334457899999 5999999999987 4677766 455432  1121211    223332 2221  1222210 01368


Q ss_pred             cEEEEccCchhHH-HHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHH
Q 031341          108 AVVIDFTDASTVY-DNVKQATA--FGMRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       108 DVVIDfT~p~~~~-~~~~~al~--~g~~vVigttg~~~e~~~~L~~~  151 (161)
                      |++|-++..+... ..+..+.+  .++++|.-.  .+++..+.|.++
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~--~~~~~~~~l~~~  117 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIARA--HYDDEVAYITER  117 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE--SSHHHHHHHHHT
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHC
Confidence            9888555443332 23333333  345555422  345666666654

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=96.15  E-value=0.005  Score=52.53  Aligned_cols=59  Identities=17%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| .|+||+.+++.+. .-|+++.+ +|+...  .    .    . +...+.++++++.      ..|+|+-.+
T Consensus       120 ktvGIIG-lG~IG~~vA~~l~-a~G~~V~~-~d~~~~--~----~----~-~~~~~~sl~ell~------~aDiV~l~~  178 (381)
T 3oet_A          120 RTIGIVG-VGNVGSRLQTRLE-ALGIRTLL-CDPPRA--A----R----G-DEGDFRTLDELVQ------EADVLTFHT  178 (381)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECHHHH--H----T----T-CCSCBCCHHHHHH------HCSEEEECC
T ss_pred             CEEEEEe-ECHHHHHHHHHHH-HCCCEEEE-ECCChH--H----h----c-cCcccCCHHHHHh------hCCEEEEcC
Confidence            6899999 6999999999987 55898764 564210  0    0    0 1112568999986      689998555

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.13  E-value=0.014  Score=50.92  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCc----chhhhhcCCCC-----------CCeeeeCCHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE----DIGMVCDMEQP-----------LEIPVMSDLT   95 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~----~~~~~~g~~~~-----------~~i~v~~dl~   95 (161)
                      .+|+|.| +|+||+..++.+. ..+.+++++.|+.     ..|.    ++..+......           ++....+ .+
T Consensus       231 ~~v~VqG-~GnVG~~~a~~L~-~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~-~~  307 (449)
T 1bgv_A          231 KTVALAG-FGNVAWGAAKKLA-ELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP-GE  307 (449)
T ss_dssp             CEEEECC-SSHHHHHHHHHHH-HHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE-TC
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeC-ch
Confidence            6899999 6999999998886 5599999999952     3444    22222111000           0112221 23


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHH
Q 031341           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSA  147 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~  147 (161)
                      +++.     .++|+++-++.++.. .+++.....+|+.+|++-.  .++++..+.
T Consensus       308 e~~~-----~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~~~  357 (449)
T 1bgv_A          308 KPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRF  357 (449)
T ss_dssp             CGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHH
T ss_pred             hhhc-----CCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHHHH
Confidence            3454     589999987766555 6788888889999999864  456665433

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.13  E-value=0.0073  Score=50.25  Aligned_cols=62  Identities=18%  Similarity=0.309  Sum_probs=42.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++.+ +|+...  ....+      .....+.++++++.      .+|+|+...
T Consensus       138 ktvGIiG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~~--~~~~~------~~~~~~~~l~ell~------~aDvV~l~l  199 (324)
T 3evt_A          138 QQLLIYG-TGQIGQSLAAKAS-ALGMHVIG-VNTTGH--PADHF------HETVAFTATADALA------TANFIVNAL  199 (324)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-EESSCC--CCTTC------SEEEEGGGCHHHHH------HCSEEEECC
T ss_pred             CeEEEEC-cCHHHHHHHHHHH-hCCCEEEE-ECCCcc--hhHhH------hhccccCCHHHHHh------hCCEEEEcC
Confidence            6899999 6999999999987 55899875 564321  11110      01122468899886      699999554

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.11  E-value=0.011  Score=50.10  Aligned_cols=91  Identities=16%  Similarity=0.189  Sum_probs=52.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|+|+|+ |.||+.+++.+... |+.-+-+++++... .+..+..|.    .+.-++++++++.      .+|+||++|
T Consensus       168 ~~VlIiGa-G~iG~~~a~~l~~~-G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~l~~~l~------~aDvVi~at  235 (404)
T 1gpj_A          168 KTVLVVGA-GEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLA------RSDVVVSAT  235 (404)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHH------TCSEEEECC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCC----ceecHHhHHHHhc------CCCEEEEcc
Confidence            58999995 99999999998754 77334466654210 112221221    1111356777774      799999988


Q ss_pred             CchhH---HHHHHH-HHH---cCCcEEEeCC
Q 031341          115 DASTV---YDNVKQ-ATA---FGMRSVVYVP  138 (161)
Q Consensus       115 ~p~~~---~~~~~~-al~---~g~~vVigtt  138 (161)
                      .....   .+.+.. .++   .+.-++++..
T Consensus       236 ~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          236 AAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             SSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             CCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            43222   134444 343   3555666653

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.08  E-value=0.023  Score=46.12  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=27.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   33 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLE-KGYEVHGIKR   33 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEEC
Confidence            46899999999999999999985 4788876654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.06  E-value=0.0041  Score=50.22  Aligned_cols=99  Identities=9%  Similarity=-0.012  Sum_probs=55.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++||+|+|+ |.||..++..+.+. +.++. ++++...+.+.....|   .....+..+..+.+.     ..+|+||-++
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~g---~~~~~~~~~~~~~~~-----~~~D~vilav   70 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQS-LPHTT-LIGRHAKTITYYTVPH---APAQDIVVKGYEDVT-----NTFDVIIIAV   70 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHH-CTTCE-EEESSCEEEEEESSTT---SCCEEEEEEEGGGCC-----SCEEEEEECS
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHC-CCeEE-EEEeccCcEEEEecCC---eeccceecCchHhcC-----CCCCEEEEeC
Confidence            379999995 99999999988754 45655 4454322211111111   111233334334332     3789999677


Q ss_pred             CchhHHHHHHH---HHHcCCcEEEeCCCCCHHH
Q 031341          115 DASTVYDNVKQ---ATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus       115 ~p~~~~~~~~~---al~~g~~vVigttg~~~e~  144 (161)
                      .|....+.+..   .+..+..+|+-.-|+..++
T Consensus        71 k~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~  103 (294)
T 3g17_A           71 KTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLE  103 (294)
T ss_dssp             CGGGHHHHGGGHHHHEEEEEEEEECCSSCCCGG
T ss_pred             CccCHHHHHHHHHHhhCCCCEEEEeccCcccHh
Confidence            66655554433   3334556666666776554

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.06  E-value=0.019  Score=49.74  Aligned_cols=111  Identities=17%  Similarity=0.230  Sum_probs=71.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC----ee-eeCCHHHHHhccccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE----IP-VMSDLTMVLGSISQS  104 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~----i~-v~~dl~~~l~~~~~~  104 (161)
                      -.||+|.| +|++|+..++.+. ..+.+++++.|++     ..|-|..++..+..+.+    ++ -+-+.++++.     
T Consensus       221 g~~vaVqG-~GnVG~~aa~~l~-e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~-----  293 (424)
T 3k92_A          221 NARIIIQG-FGNAGSFLAKFMH-DAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLE-----  293 (424)
T ss_dssp             GCEEEEEC-CSHHHHHHHHHHH-HHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHH-----
T ss_pred             cCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCcccee-----
Confidence            37899999 6999999999887 4589999999953     45666555443322222    11 1224577776     


Q ss_pred             CCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          105 KARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .++|+++-++..+.. .+++..   -+..+|++-.  .++++..+.|    ++.+|++
T Consensus       294 ~~~DIliPcA~~n~I~~~~a~~---l~ak~V~EgAN~p~t~eA~~iL----~~rGI~~  344 (424)
T 3k92_A          294 KDCDILVPAAISNQITAKNAHN---IQASIVVERANGPTTIDATKIL----NERGVLL  344 (424)
T ss_dssp             SCCSEEEECSCSSCBCTTTGGG---CCCSEEECCSSSCBCHHHHHHH----HHTTCEE
T ss_pred             ccccEEeecCcccccChhhHhh---cCceEEEcCCCCCCCHHHHHHH----HHCCCEE
Confidence            589999987755433 344443   3888888764  3455544444    4456654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.05  E-value=0.018  Score=52.60  Aligned_cols=103  Identities=13%  Similarity=0.047  Sum_probs=56.5

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhh--cCC-------CCCCeeeeCC
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVC--DME-------QPLEIPVMSD   93 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~---------~~~~--g~~-------~~~~i~v~~d   93 (161)
                      +..+.||+|+| .|.||..++..+. ..|++++ ++|++....+.         ..+.  |..       ....+..++|
T Consensus       309 ~~~~~kV~VIG-aG~MG~~iA~~la-~aG~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d  385 (725)
T 2wtb_A          309 PRKIKKVAIIG-GGLMGSGIATALI-LSNYPVI-LKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLD  385 (725)
T ss_dssp             CCCCCCEEEEC-CSHHHHHHHHHHH-TTTCCEE-EECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESS
T ss_pred             cccCcEEEEEc-CCHhhHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCC
Confidence            34467899999 5999999999987 5688755 56753211000         0000  100       0112455677


Q ss_pred             HHHHHhcccccCCccEEEEccCchhH-----HHHHHHHHHcCCcEEEeCCCCCHHH
Q 031341           94 LTMVLGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~g~~vVigttg~~~e~  144 (161)
                      ++ .+      .++|+||.+...+..     ...+...+..+.-+++-|++++.++
T Consensus       386 ~~-~~------~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~  434 (725)
T 2wtb_A          386 YE-SF------RDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNK  434 (725)
T ss_dssp             SG-GG------TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH
T ss_pred             HH-HH------CCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH
Confidence            74 44      379999966543321     2223334444554445555676554

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.04  E-value=0.024  Score=48.61  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=31.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEec
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDS   69 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~   69 (161)
                      ..+.+|.|.|++|.+|+.+++.+.+.+  +.+++++..+
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~  109 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRA  109 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            356899999999999999999998765  7898887764

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.04  E-value=0.021  Score=45.38  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=28.4

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .++.+|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~r~   45 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTE-QNVEVFGTSRN   45 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             cCcceEEEECCCChHHHHHHHHHHH-CCCEEEEEecC
Confidence            3468999999999999999999985 57898876543

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=96.03  E-value=0.028  Score=45.15  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=27.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC------cEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~------~eLvavvd   68 (161)
                      .+++|.|.|++|.+|+.+++.+.+...      .+++++..
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r   53 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDV   53 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEES
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEc
Confidence            347999999999999999999986531      67776544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.03  E-value=0.024  Score=47.13  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -||+|+|+ |-||+.|+.... ..|++++ ++|.
T Consensus         7 ~~VaViGa-G~MG~giA~~~a-~~G~~V~-l~D~   37 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFA-SGGFRVK-LYDI   37 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCCEE-EECS
T ss_pred             CeEEEECC-cHHHHHHHHHHH-hCCCeEE-EEEC
Confidence            48999995 999999998876 6789855 7774

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.99  E-value=0.017  Score=49.91  Aligned_cols=103  Identities=20%  Similarity=0.302  Sum_probs=65.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee--eeCCHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP--VMSDLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~-i~--v~~dl~~~l~~~~~~~~  106 (161)
                      -.+|+|.| +|++|+..++.+. ..+..++++.|++     ..|.+..++..+....+ +.  .+ +-++++.     .+
T Consensus       218 gk~vaVqG-~GnVG~~~a~~L~-~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~-----~~  289 (419)
T 3aoe_E          218 GARVVVQG-LGQVGAAVALHAE-RLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFG-----LE  289 (419)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGG-----SS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhc-----cC
Confidence            37899999 6999999999887 5699999999962     34555443322110111 10  11 2245554     58


Q ss_pred             ccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341          107 RAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSAL  148 (161)
Q Consensus       107 ~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L  148 (161)
                      +|+++-++.++.. .+++.   +-+..+|++-.  .++++..+.|
T Consensus       290 ~DVliP~A~~n~i~~~~A~---~l~ak~V~EgAN~p~t~~A~~~L  331 (419)
T 3aoe_E          290 AEVLVLAAREGALDGDRAR---QVQAQAVVEVANFGLNPEAEAYL  331 (419)
T ss_dssp             CSEEEECSCTTCBCHHHHT---TCCCSEEEECSTTCBCHHHHHHH
T ss_pred             ceEEEecccccccccchHh---hCCceEEEECCCCcCCHHHHHHH
Confidence            9999988876655 34444   34889998864  3566554444

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.98  E-value=0.038  Score=48.01  Aligned_cols=75  Identities=11%  Similarity=0.106  Sum_probs=46.9

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCcc------hhhhhcC-CCCCCeeeeCCHH
Q 031341           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGED------IGMVCDM-EQPLEIPVMSDLT   95 (161)
Q Consensus        30 ~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-------~g~~------~~~~~g~-~~~~~i~v~~dl~   95 (161)
                      |..+.|-+|+|+| +|++|--++..+. ..++++++ +|.+.       .|+.      +.+++.. -......+++|.+
T Consensus        16 p~~~~m~~IaViG-lGYVGLp~A~~~A-~~G~~V~g-~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~   92 (444)
T 3vtf_A           16 PRGSHMASLSVLG-LGYVGVVHAVGFA-LLGHRVVG-YDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAE   92 (444)
T ss_dssp             CTTCCCCEEEEEC-CSHHHHHHHHHHH-HHTCEEEE-ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHH
T ss_pred             CCCCCCCEEEEEc-cCHHHHHHHHHHH-hCCCcEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHH
Confidence            4456788999999 6999998888776 45888775 57321       1110      1111100 0123456678888


Q ss_pred             HHHhcccccCCccEEEEc
Q 031341           96 MVLGSISQSKARAVVIDF  113 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDf  113 (161)
                      +++.      ..|+++.+
T Consensus        93 ~ai~------~ad~~~I~  104 (444)
T 3vtf_A           93 EAVA------ATDATFIA  104 (444)
T ss_dssp             HHHH------TSSEEEEC
T ss_pred             HHHh------cCCceEEE
Confidence            8875      68988754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.96  E-value=0.028  Score=44.81  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=27.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~   36 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLE-KGYEVYGADRR   36 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEECC
Confidence            5899999999999999999985 57888866543

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.94  E-value=0.013  Score=48.14  Aligned_cols=73  Identities=16%  Similarity=0.101  Sum_probs=43.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---CCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~---~dl~~~l~~~~~~~~~DVVID  112 (161)
                      |||+|+|++|.+|..++..+....-..-+.++|.........++.....+..+..+   +|+++++.      ++|+||-
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~------~aDvVvi   74 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK------GCDVVVI   74 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT------TCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhC------CCCEEEE
Confidence            59999997799999999988754322335577854310111122211111223332   57888775      8999885


Q ss_pred             cc
Q 031341          113 FT  114 (161)
Q Consensus       113 fT  114 (161)
                      ..
T Consensus        75 ~a   76 (314)
T 1mld_A           75 PA   76 (314)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.91  E-value=0.052  Score=43.15  Aligned_cols=47  Identities=19%  Similarity=0.218  Sum_probs=28.2

Q ss_pred             ccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           20 KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        20 ~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      +.+++++-+-...-..-.+.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus        14 ~~~n~~~~~mm~~~~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~   60 (280)
T 4da9_A           14 GTENLYFQSMMTQKARPVAIVTGGRRGIGLGIARALA-ASGFDIAITG   60 (280)
T ss_dssp             ---------CCSCCCCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             cccchhhhhhhhccCCCEEEEecCCCHHHHHHHHHHH-HCCCeEEEEe
Confidence            4455555443322223468999999999999999997 5688877554

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=95.91  E-value=0.073  Score=40.83  Aligned_cols=84  Identities=19%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC---HHHHHhcccccCCccEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARAVV  110 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d---l~~~l~~~~~~~~~DVV  110 (161)
                      .+-|+.|+|| |..|+.+++.+.. .++++++.+|.....   ..      -.++|++..   ++++..     ...+-+
T Consensus        11 ~~k~v~IiGA-Gg~g~~v~~~l~~-~~~~~vgfiDd~~~~---~~------~~g~~Vlg~~~~~~~~~~-----~~~~~v   74 (220)
T 4ea9_A           11 AIGGVVIIGG-GGHAKVVIESLRA-CGETVAAIVDADPTR---RA------VLGVPVVGDDLALPMLRE-----QGLSRL   74 (220)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHH-TTCCEEEEECSCC------C------BTTBCEEESGGGHHHHHH-----TTCCEE
T ss_pred             CCCCEEEEcC-CHHHHHHHHHHHh-CCCEEEEEEeCCccc---Cc------CCCeeEECCHHHHHHhhc-----ccccEE
Confidence            4458999996 9999999999875 789999999954321   11      236777644   444443     235544


Q ss_pred             EEcc-CchhHHHHHHHHHHcCCcE
Q 031341          111 IDFT-DASTVYDNVKQATAFGMRS  133 (161)
Q Consensus       111 IDfT-~p~~~~~~~~~al~~g~~v  133 (161)
                      +-+- .|..-.+....+.+.|..+
T Consensus        75 ~iAIg~~~~R~~i~~~l~~~g~~~   98 (220)
T 4ea9_A           75 FVAIGDNRLRQKLGRKARDHGFSL   98 (220)
T ss_dssp             EECCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCc
Confidence            4232 3333356667777887654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=95.89  E-value=0.027  Score=48.53  Aligned_cols=60  Identities=20%  Similarity=0.117  Sum_probs=42.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++. ++|+... ..         ..+...+.++++++.      .+|+|+-..
T Consensus       157 ktvGIIG-lG~IG~~vA~~l~-~~G~~V~-~yd~~~~-~~---------~~~~~~~~sl~ell~------~aDvV~lhv  216 (416)
T 3k5p_A          157 KTLGIVG-YGNIGSQVGNLAE-SLGMTVR-YYDTSDK-LQ---------YGNVKPAASLDELLK------TSDVVSLHV  216 (416)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECTTCC-CC---------BTTBEECSSHHHHHH------HCSEEEECC
T ss_pred             CEEEEEe-eCHHHHHHHHHHH-HCCCEEE-EECCcch-hc---------ccCcEecCCHHHHHh------hCCEEEEeC
Confidence            6899999 7999999999887 4589866 5675321 00         112334579999986      699998544

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=95.88  E-value=0.013  Score=49.86  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| .|+||+.+++.+. .-|+++. ++|+...  ..    +    .+. .+.++++++.      .+|+|+-..
T Consensus       117 ~tvGIIG-lG~IG~~vA~~l~-~~G~~V~-~~d~~~~--~~----~----~g~-~~~~l~ell~------~aDvV~l~~  175 (380)
T 2o4c_A          117 RTYGVVG-AGQVGGRLVEVLR-GLGWKVL-VCDPPRQ--AR----E----PDG-EFVSLERLLA------EADVISLHT  175 (380)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECHHHH--HH----S----TTS-CCCCHHHHHH------HCSEEEECC
T ss_pred             CEEEEEe-CCHHHHHHHHHHH-HCCCEEE-EEcCChh--hh----c----cCc-ccCCHHHHHH------hCCEEEEec
Confidence            6899999 6999999999987 5589876 4664211  00    0    111 2468999886      689999655

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=95.87  E-value=0.042  Score=43.98  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   31 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            4899999999999999999984 588887654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.85  E-value=0.022  Score=47.72  Aligned_cols=60  Identities=27%  Similarity=0.238  Sum_probs=42.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|+||+.+++.+. .-|+++. ++|+...  +  ..     ..++ -+.++++++.      .+|+|+-..
T Consensus       149 ktvgIiG-lG~IG~~vA~~l~-~~G~~V~-~~d~~~~--~--~~-----~~~~-~~~~l~ell~------~aDvV~l~~  208 (343)
T 2yq5_A          149 LTVGLIG-VGHIGSAVAEIFS-AMGAKVI-AYDVAYN--P--EF-----EPFL-TYTDFDTVLK------EADIVSLHT  208 (343)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC--G--GG-----TTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             CeEEEEe-cCHHHHHHHHHHh-hCCCEEE-EECCChh--h--hh-----hccc-cccCHHHHHh------cCCEEEEcC
Confidence            6899999 6999999999987 4589866 5565321  1  11     1122 2349999986      699999555

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.85  E-value=0.012  Score=48.18  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=28.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~-~g~~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLG-KGYEVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHH-CCCEEEEEecC
Confidence            4899999999999999999985 57898876653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.82  E-value=0.097  Score=43.16  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=43.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhcC-CCCCCeeeeCCHHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~---g--~~~~~~~g~-~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      ++||+|+|+ |.||..++..+. ..++ + +..+|.+..   +  .+....... .....+..++|+ +++.      ++
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la-~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~------~a   83 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLG-QKDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQ------NS   83 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HTTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT------TC
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHC------CC
Confidence            369999996 999999998876 4466 7 778886431   1  111111100 002235556787 5553      78


Q ss_pred             cEEEEcc
Q 031341          108 AVVIDFT  114 (161)
Q Consensus       108 DVVIDfT  114 (161)
                      |+||...
T Consensus        84 D~VI~av   90 (328)
T 2hjr_A           84 DVVIITA   90 (328)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9888654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.79  E-value=0.026  Score=46.44  Aligned_cols=60  Identities=23%  Similarity=0.196  Sum_probs=42.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+.....          .  + .+.++++++.      ..|+|+...
T Consensus       144 g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~~~----------~--~-~~~~l~ell~------~aDvV~l~~  201 (311)
T 2cuk_A          144 GLTLGLVG-MGRIGQAVAKRAL-AFGMRVV-YHARTPKPL----------P--Y-PFLSLEELLK------EADVVSLHT  201 (311)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCCSS----------S--S-CBCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEE-ECHHHHHHHHHHH-HCCCEEE-EECCCCccc----------c--c-ccCCHHHHHh------hCCEEEEeC
Confidence            37899999 6999999999987 4578865 566543111          0  1 1468888886      689999655


Q ss_pred             Cc
Q 031341          115 DA  116 (161)
Q Consensus       115 ~p  116 (161)
                      +.
T Consensus       202 p~  203 (311)
T 2cuk_A          202 PL  203 (311)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.79  E-value=0.029  Score=46.08  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=39.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC--CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~--g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      ..+.||+|+|+ |.||..++..+... ++ .=+..+|....  |. ..++.... ...+..+.|+ +.+.      ++|+
T Consensus        12 ~~~~kV~ViGa-G~vG~~~a~~l~~~-g~~~ev~L~Di~~~~~g~-a~dl~~~~-~~~i~~t~d~-~~l~------~aD~   80 (303)
T 2i6t_A           12 KTVNKITVVGG-GELGIACTLAISAK-GIADRLVLLDLSEGTKGA-TMDLEIFN-LPNVEISKDL-SASA------HSKV   80 (303)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHH-TCCSEEEEECCC-----C-HHHHHHHT-CTTEEEESCG-GGGT------TCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhc-CCCCEEEEEcCCcchHHH-HHHHhhhc-CCCeEEeCCH-HHHC------CCCE
Confidence            34689999996 99999999888744 44 22447885321  11 11222111 1245556777 3343      6777


Q ss_pred             EEEc
Q 031341          110 VIDF  113 (161)
Q Consensus       110 VIDf  113 (161)
                      ||..
T Consensus        81 Vi~a   84 (303)
T 2i6t_A           81 VIFT   84 (303)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.77  E-value=0.01  Score=54.14  Aligned_cols=37  Identities=11%  Similarity=0.167  Sum_probs=28.6

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ++....||+|+| .|.||..++..+. ..+++++ ++|++
T Consensus       310 ~~~~i~kV~VIG-aG~MG~~iA~~la-~aG~~V~-l~D~~  346 (715)
T 1wdk_A          310 IAKDVKQAAVLG-AGIMGGGIAYQSA-SKGTPIL-MKDIN  346 (715)
T ss_dssp             TCCCCSSEEEEC-CHHHHHHHHHHHH-HTTCCEE-EECSS
T ss_pred             ccccCCEEEEEC-CChhhHHHHHHHH-hCCCEEE-EEECC
Confidence            344557899999 5999999999987 4588755 67754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=95.75  E-value=0.029  Score=44.50  Aligned_cols=32  Identities=19%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|.|.|++|.+|+.+++.+. ..+.+++++..
T Consensus         2 k~vlVTGatG~iG~~l~~~L~-~~G~~V~~~~r   33 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLL-ENGYSVNTTIR   33 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEECC
T ss_pred             CEEEEECChhHHHHHHHHHHH-HCCCEEEEEEe
Confidence            379999999999999999997 46889887664

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.74  E-value=0.033  Score=41.50  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=27.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd   68 (161)
                      ++||.|.|++|.+|+.+++.+.+.... +++++..
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r   39 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR   39 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBS
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            368999999999999999999865442 7776544

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.73  E-value=0.015  Score=47.39  Aligned_cols=105  Identities=11%  Similarity=0.083  Sum_probs=55.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee----------CCHHHHHhccccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----------SDLTMVLGSISQS  104 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~----------~dl~~~l~~~~~~  104 (161)
                      ++||+|+|+ |.||..++..+.  .+.++.. +++..  .....+.    +.|+.+.          ..-++..      
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~--~g~~V~~-~~r~~--~~~~~l~----~~G~~~~~~~~~~~~~~~~~~~~~------   65 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS--LYHDVTV-VTRRQ--EQAAAIQ----SEGIRLYKGGEEFRADCSADTSIN------   65 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH--TTSEEEE-ECSCH--HHHHHHH----HHCEEEEETTEEEEECCEEESSCC------
T ss_pred             CCEEEEECC-CHHHHHHHHHHh--cCCceEE-EECCH--HHHHHHH----hCCceEecCCCeeccccccccccc------
Confidence            489999995 999999999887  6788764 44321  1111110    1111111          0001222      


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          105 KARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~g-~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      ..+|+||-++.|....+.+......+ ..+|+-.-|+..+  +.|.++--+.+|
T Consensus        66 ~~~D~vilavK~~~~~~~l~~l~~~~~~~ivs~~nGi~~~--e~l~~~~~~~~v  117 (307)
T 3ego_A           66 SDFDLLVVTVKQHQLQSVFSSLERIGKTNILFLQNGMGHI--HDLKDWHVGHSI  117 (307)
T ss_dssp             SCCSEEEECCCGGGHHHHHHHTTSSCCCEEEECCSSSHHH--HHHHTCCCSCEE
T ss_pred             CCCCEEEEEeCHHHHHHHHHHhhcCCCCeEEEecCCccHH--HHHHHhCCCCcE
Confidence            47899996666665555554332222 2266655687644  245444333334

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=95.70  E-value=0.019  Score=46.09  Aligned_cols=34  Identities=26%  Similarity=0.374  Sum_probs=28.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +.+|.|.|++|.+|+.+++.+.+ .+.++++++.+
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~   38 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLE-RGYTVRATVRD   38 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEECC
Confidence            46899999999999999999984 68898877653

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.039  Score=45.11  Aligned_cols=98  Identities=20%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      -+|.|+|++|.+|+.+++.+. ..+.+++++..+.. ..+.....|..  .-+..  ..++.+.+.++... .+|++||+
T Consensus       171 ~~vlV~Ga~ggiG~~~~~~a~-~~Ga~V~~~~~~~~-~~~~~~~~g~~--~~~d~~~~~~~~~~~~~~~~~-~~D~vi~~  245 (347)
T 2hcy_A          171 HWVAISGAAGGLGSLAVQYAK-AMGYRVLGIDGGEG-KEELFRSIGGE--VFIDFTKEKDIVGAVLKATDG-GAHGVINV  245 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECSTT-HHHHHHHTTCC--EEEETTTCSCHHHHHHHHHTS-CEEEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCcEEEEcCCHH-HHHHHHHcCCc--eEEecCccHhHHHHHHHHhCC-CCCEEEEC
Confidence            479999998999999998776 56788776543321 11111112210  00111  13444444321112 68999998


Q ss_pred             cCchhHHHHHHHHHH-cCCcEEEeCC
Q 031341          114 TDASTVYDNVKQATA-FGMRSVVYVP  138 (161)
Q Consensus       114 T~p~~~~~~~~~al~-~g~~vVigtt  138 (161)
                      +......+.+..+++ .|.-+.+|.+
T Consensus       246 ~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          246 SVSEAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             SSCHHHHHHHTTSEEEEEEEEECCCC
T ss_pred             CCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            865444444444444 3444445544

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.69  E-value=0.017  Score=43.07  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=28.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|||.|.|++|.+|+.+++.+.  .+.+++.+..
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~--~g~~V~~~~r   34 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE--KKAEVITAGR   34 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT--TTSEEEEEES
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH--CCCeEEEEec
Confidence            45789999999999999999997  6899876544

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.68  E-value=0.029  Score=44.29  Aligned_cols=45  Identities=16%  Similarity=0.201  Sum_probs=25.0

Q ss_pred             ceeEEeeCCCCCCCe-----eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           22 KRFISCSTNPPQSNI-----KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        22 ~~~~~~~~~~~~~~i-----kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      +++-.+..++.+++|     ++.|.|++|.+|+.+++.+. ..|.+++.+.
T Consensus         9 ~~~~~~~~~~~~~~m~l~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~   58 (260)
T 3gem_A            9 HHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLL-EHGHRVIISY   58 (260)
T ss_dssp             ------------------CCCEEESSTTSHHHHHHHHHHH-HTTCCEEEEE
T ss_pred             cccccccCcccccCcCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEe
Confidence            345556666666553     58999999999999999997 4578866544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.68  E-value=0.049  Score=44.20  Aligned_cols=72  Identities=17%  Similarity=0.081  Sum_probs=41.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCC-Ccchh-hh---hcCCCCCCeee-eCCHHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV-GEDIG-MV---CDMEQPLEIPV-MSDLTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~-g~~~~-~~---~g~~~~~~i~v-~~dl~~~l~~~~~~~~~  107 (161)
                      |+||+|+| .|.||..++..+....- .++ .++|++.. -.... ++   .... ...+.+ .+|+ +.+.      ++
T Consensus         1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V-~l~d~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~d~-~~~~------~a   70 (309)
T 1hyh_A            1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDY-VFIDANEAKVKADQIDFQDAMANL-EAHGNIVINDW-AALA------DA   70 (309)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCCSEE-EEECSSHHHHHHHHHHHHHHGGGS-SSCCEEEESCG-GGGT------TC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCCEE-EEEcCCHHHHHHHHHHHHhhhhhc-CCCeEEEeCCH-HHhC------CC
Confidence            57999999 59999999999875531 354 46775321 01111 11   0000 112344 4677 4453      79


Q ss_pred             cEEEEccCc
Q 031341          108 AVVIDFTDA  116 (161)
Q Consensus       108 DVVIDfT~p  116 (161)
                      |+||.++.+
T Consensus        71 DvViiav~~   79 (309)
T 1hyh_A           71 DVVISTLGN   79 (309)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEEecCC
Confidence            999966643

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=95.67  E-value=0.016  Score=48.23  Aligned_cols=61  Identities=20%  Similarity=0.156  Sum_probs=41.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|||+| +|++|+.+++.+. .=++++. ++|+..  .+...      +.++ .+.++++++.      ..|+|+-..
T Consensus       142 ~tvGIiG-~G~IG~~va~~~~-~fg~~v~-~~d~~~--~~~~~------~~~~-~~~~l~ell~------~sDivslh~  202 (334)
T 3kb6_A          142 LTLGVIG-TGRIGSRVAMYGL-AFGMKVL-CYDVVK--REDLK------EKGC-VYTSLDELLK------ESDVISLHV  202 (334)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSC--CHHHH------HTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             cEEEEEC-cchHHHHHHHhhc-ccCceee-ecCCcc--chhhh------hcCc-eecCHHHHHh------hCCEEEEcC
Confidence            5899999 7999999999876 5688877 456432  11111      1122 2568999986      588888544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.65  E-value=0.059  Score=46.01  Aligned_cols=105  Identities=15%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eC---CHHHHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~---dl~~~l~~~~~~~~~DVV  110 (161)
                      ..+|.|+| .|++|+.+++.|. ..+.+++ ++|.+.  ..+..+.    ..|+++ +.   +.+- |.+. .-.++|+|
T Consensus         4 ~~~viIiG-~Gr~G~~va~~L~-~~g~~vv-vId~d~--~~v~~~~----~~g~~vi~GDat~~~~-L~~a-gi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAG-FGRFGQITGRLLL-SSGVKMV-VLDHDP--DHIETLR----KFGMKVFYGDATRMDL-LESA-GAAKAEVL   72 (413)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHH-HTTCCEE-EEECCH--HHHHHHH----HTTCCCEESCTTCHHH-HHHT-TTTTCSEE
T ss_pred             CCeEEEEC-CCHHHHHHHHHHH-HCCCCEE-EEECCH--HHHHHHH----hCCCeEEEcCCCCHHH-HHhc-CCCccCEE
Confidence            46899999 5999999999887 5678766 456432  1122211    224433 32   3322 2210 01368988


Q ss_pred             EEccCch-hHHHHHHHHHHcCC--cEEEeCCCCCHHHHHHHHHHh
Q 031341          111 IDFTDAS-TVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFC  152 (161)
Q Consensus       111 IDfT~p~-~~~~~~~~al~~g~--~vVigttg~~~e~~~~L~~~A  152 (161)
                      |-++..+ .....+..+.+.+.  ++|.=.  .+.+....|.++.
T Consensus        73 iv~~~~~~~n~~i~~~ar~~~p~~~Iiara--~~~~~~~~L~~~G  115 (413)
T 3l9w_A           73 INAIDDPQTNLQLTEMVKEHFPHLQIIARA--RDVDHYIRLRQAG  115 (413)
T ss_dssp             EECCSSHHHHHHHHHHHHHHCTTCEEEEEE--SSHHHHHHHHHTT
T ss_pred             EECCCChHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHCC
Confidence            8555433 23445555556554  444422  4566666666553

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=95.65  E-value=0.069  Score=47.22  Aligned_cols=107  Identities=12%  Similarity=0.066  Sum_probs=63.1

Q ss_pred             eCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCC
Q 031341           28 STNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDME   83 (161)
Q Consensus        28 ~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~-----~~g~~   83 (161)
                      |....|..   -||.|+|+ |..|..+++.|. ..|+.=+.++|.+.                .|++-.+     +..+.
T Consensus        22 ~G~~~q~~L~~~~VlvvG~-GGlGseiak~La-~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN   99 (531)
T 1tt5_A           22 WGDHGQEALESAHVCLINA-TATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN   99 (531)
T ss_dssp             HHHHHHHHHHHCEEEEECC-SHHHHHHHHHHH-TTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHhcCeEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC
Confidence            44444433   69999995 999999999997 77887777888431                1222111     11111


Q ss_pred             CCCCee-eeCCHHHHHhcc-cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341           84 QPLEIP-VMSDLTMVLGSI-SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (161)
Q Consensus        84 ~~~~i~-v~~dl~~~l~~~-~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig  136 (161)
                      ....+. +..++++.++.. .--..+|+|||++..... ......|.++++|+|.+
T Consensus       100 p~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~  155 (531)
T 1tt5_A          100 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLIC  155 (531)
T ss_dssp             TTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            011222 223444321100 000268999999855444 45667899999999976

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.61  E-value=0.034  Score=44.38  Aligned_cols=58  Identities=28%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             eecccccccccccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      |-|-||-|.+-+.-+=+++..-.....-.+.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~m~~~~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~   59 (283)
T 3v8b_A            2 HHHHHHSSGVDLGTENLYFQSMMNQPSPVALITGAGSGIGRATALALA-ADGVTVGALG   59 (283)
T ss_dssp             -------------------------CCCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CCccCCccccccccchhhhhhhcCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEe
Confidence            445566666655444444432222222368999999999999999998 5588876543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.60  E-value=0.019  Score=46.48  Aligned_cols=33  Identities=18%  Similarity=0.158  Sum_probs=28.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        10 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   42 (357)
T 1rkx_A           10 KRVFVTGHTGFKGGWLSLWLQT-MGATVKGYSLT   42 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CEEEEECCCchHHHHHHHHHHh-CCCeEEEEeCC
Confidence            6899999999999999999985 57898876653

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.54  E-value=0.069  Score=41.91  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -.|.|.|++|.+|+.+++.+. ..+.+++...++
T Consensus        27 k~vlITGas~gIG~a~a~~l~-~~G~~V~~~~~~   59 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAA-RQGWRVGVNYAA   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            368999999999999999987 568887665554

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.52  E-value=0.029  Score=47.32  Aligned_cols=103  Identities=14%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|.| +|++|+.+++.+. .-+++++ ++|+...  + .++.   ...+... .+.++++.     .+.|+++-+.+
T Consensus       176 ktV~I~G-~GnVG~~~A~~l~-~~GakVv-vsD~~~~--~-~~~a---~~~ga~~-v~~~ell~-----~~~DIliP~A~  240 (355)
T 1c1d_A          176 LTVLVQG-LGAVGGSLASLAA-EAGAQLL-VADTDTE--R-VAHA---VALGHTA-VALEDVLS-----TPCDVFAPCAM  240 (355)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCHH--H-HHHH---HHTTCEE-CCGGGGGG-----CCCSEEEECSC
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EEeCCcc--H-HHHH---HhcCCEE-eChHHhhc-----CccceecHhHH
Confidence            6899999 6999999999887 5589999 8885421  1 1121   1223332 25667775     47899885554


Q ss_pred             chhH-HHHHHHHHHcCCcEEEeCCC--CCHHHHHHHHHHhhhcCeee
Q 031341          116 ASTV-YDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       116 p~~~-~~~~~~al~~g~~vVigttg--~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+.. .+++.   .-+..+|++...  ++.++.   .++-++.+|++
T Consensus       241 ~~~I~~~~~~---~lk~~iVie~AN~p~t~~eA---~~~L~~~gIlv  281 (355)
T 1c1d_A          241 GGVITTEVAR---TLDCSVVAGAANNVIADEAA---SDILHARGILY  281 (355)
T ss_dssp             SCCBCHHHHH---HCCCSEECCSCTTCBCSHHH---HHHHHHTTCEE
T ss_pred             HhhcCHHHHh---hCCCCEEEECCCCCCCCHHH---HHHHHhCCEEE
Confidence            4333 33443   336788888752  333232   23445555554

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.48  E-value=0.041  Score=43.47  Aligned_cols=110  Identities=13%  Similarity=0.093  Sum_probs=54.4

Q ss_pred             cccccccccccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 031341           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (161)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v   90 (161)
                      .-||-|-.....+|+--.-+...  .||.|+|+ |.+|..-++.+.+. |.++. ++++... ..+.++..   ..++.+
T Consensus         9 ~~~~~~~~~~~~~~~Pifl~L~g--k~VLVVGg-G~va~~ka~~Ll~~-GA~Vt-Vvap~~~-~~l~~l~~---~~~i~~   79 (223)
T 3dfz_A            9 HHHHSSGHIEGRHMYTVMLDLKG--RSVLVVGG-GTIATRRIKGFLQE-GAAIT-VVAPTVS-AEINEWEA---KGQLRV   79 (223)
T ss_dssp             -------------CCEEEECCTT--CCEEEECC-SHHHHHHHHHHGGG-CCCEE-EECSSCC-HHHHHHHH---TTSCEE
T ss_pred             ccccccCcccccCccccEEEcCC--CEEEEECC-CHHHHHHHHHHHHC-CCEEE-EECCCCC-HHHHHHHH---cCCcEE
Confidence            34566667777776544444333  58999995 99999999998854 67665 5554321 22333331   223322


Q ss_pred             -eCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEE
Q 031341           91 -MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus        91 -~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vV  134 (161)
                       ...+++..-     .++|.||-+|.-......+....+.|+++-
T Consensus        80 i~~~~~~~dL-----~~adLVIaAT~d~~~N~~I~~~ak~gi~VN  119 (223)
T 3dfz_A           80 KRKKVGEEDL-----LNVFFIVVATNDQAVNKFVKQHIKNDQLVN  119 (223)
T ss_dssp             ECSCCCGGGS-----SSCSEEEECCCCTHHHHHHHHHSCTTCEEE
T ss_pred             EECCCCHhHh-----CCCCEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence             223322211     378988866644444444444445777754

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.41  E-value=0.015  Score=47.36  Aligned_cols=33  Identities=9%  Similarity=0.010  Sum_probs=25.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -++.|+|+ |.||+.++..+. ..+++-+.+++++
T Consensus       118 k~vlvlGa-Gg~g~aia~~L~-~~G~~~v~v~~R~  150 (277)
T 3don_A          118 AYILILGA-GGASKGIANELY-KIVRPTLTVANRT  150 (277)
T ss_dssp             CCEEEECC-SHHHHHHHHHHH-TTCCSCCEEECSC
T ss_pred             CEEEEECC-cHHHHHHHHHHH-HCCCCEEEEEeCC
Confidence            58999995 999999999987 4567334466654

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=95.39  E-value=0.052  Score=41.46  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++...
T Consensus         3 k~vlITGas~gIG~~ia~~l~-~~G~~V~~~~   33 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALA-RDGYALALGA   33 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEe
Confidence            368999999999999999998 5678866443

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.37  E-value=0.098  Score=42.13  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=26.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSH   70 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~   70 (161)
                      .++||+|+|+ |.||..++..+.. .+.  +++ ++|+.
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~-~g~~~~V~-l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQ-RGIAREIV-LEDIA   41 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHH-TTCCSEEE-EECSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHh-CCCCCEEE-EEeCC
Confidence            4589999996 9999999998874 455  664 67753

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.32  E-value=0.014  Score=46.29  Aligned_cols=58  Identities=26%  Similarity=0.226  Sum_probs=26.9

Q ss_pred             ecccccccccccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           10 CRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -+-||-.|+-+.++-++...-..-..-++.|.|++|.+|+.+++.+. ..|.+++. +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~m~~l~gk~vlVTGas~gIG~aia~~la-~~G~~V~~-~~r   60 (266)
T 3uxy_A            3 HHHHHSSGVDLGTENLYFQSMQGFEGKVALVTGAAGGIGGAVVTALR-AAGARVAV-ADR   60 (266)
T ss_dssp             -----------------------CTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEE-CSS
T ss_pred             ccccCCCCCCCCCCCcchhhhhCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EeC
Confidence            34566677777666665443322223468999999999999999997 56888664 443

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.28  E-value=0.17  Score=41.18  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=26.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~   70 (161)
                      ++||+|+|+ |.||..++..+... ++ + +.++|++
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~-g~~~-V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKD-NLAD-VVLFDIA   37 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHH-TCCE-EEEECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCce-EEEEeCC
Confidence            479999996 99999999998754 55 7 6688854

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.27  E-value=0.32  Score=40.11  Aligned_cols=87  Identities=18%  Similarity=0.301  Sum_probs=52.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|++|.+|+.+++.+. ..+.+++.+..+.....+.              ...++++.+++. .....   +..|.
T Consensus        47 ~vlVTGas~GIG~aia~~La-~~Ga~Vvl~~r~~~~~~~l--------------~~~l~~~~~~~~-~~g~~~~~~~~Dv  110 (346)
T 3kvo_A           47 TVFITGASRGIGKAIALKAA-KDGANIVIAAKTAQPHPKL--------------LGTIYTAAEEIE-AVGGKALPCIVDV  110 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-TTTCEEEEEESCCSCCSSS--------------CCCHHHHHHHHH-HTTCEEEEEECCT
T ss_pred             EEEEeCCChHHHHHHHHHHH-HCCCEEEEEECChhhhhhh--------------HHHHHHHHHHHH-hcCCeEEEEEccC
Confidence            68999999999999999997 5688877654432211110              011222111100 01222   34578


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      +.++...+.+..+.+.  ++.+++-..|
T Consensus       111 ~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          111 RDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888877777666655  7888887654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.27  E-value=0.044  Score=44.77  Aligned_cols=71  Identities=10%  Similarity=-0.004  Sum_probs=43.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc--hhhhhcC----CCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--IGMVCDM----EQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~--~~~~~g~----~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      ++||+|+|+ |.||..++..+....-++ +..+|.+....+  ..++...    .....+..++|+ +.+.      ++|
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~------~aD   72 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTA------NSD   72 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGT------TCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHC------CCC
Confidence            379999996 999999999887554448 788885431000  1111110    001234445787 4553      799


Q ss_pred             EEEEcc
Q 031341          109 VVIDFT  114 (161)
Q Consensus       109 VVIDfT  114 (161)
                      +||...
T Consensus        73 ~Vi~a~   78 (309)
T 1ur5_A           73 VIVVTS   78 (309)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.27  E-value=0.044  Score=45.34  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=54.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|.|+|++|.+|...++.+....+.+++++..+.. ..+...-+|..   .+.-+ +++.+.+.++ ....+|+++|++
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~-~~~~~~~lGad---~vi~~~~~~~~~v~~~-~~~g~Dvvid~~  247 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPE-TQEWVKSLGAH---HVIDHSKPLAAEVAAL-GLGAPAFVFSTT  247 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHH-HHHHHHHTTCS---EEECTTSCHHHHHHTT-CSCCEEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHHHHcCCC---EEEeCCCCHHHHHHHh-cCCCceEEEECC
Confidence            579999988999999888776557888876654321 11111112211   11111 3444444322 124799999998


Q ss_pred             CchhHHHHHHHHHHcCCcE-EEe
Q 031341          115 DASTVYDNVKQATAFGMRS-VVY  136 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~v-Vig  136 (161)
                      ......+.+..+++.+=.+ ++|
T Consensus       248 g~~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          248 HTDKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             CHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CchhhHHHHHHHhcCCCEEEEEC
Confidence            7655555555555555443 344

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.24  E-value=0.16  Score=39.20  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus        13 k~vlVTGasggiG~~~a~~l~-~~G~~V~~~~r   44 (265)
T 2o23_A           13 LVAVITGGASGLGLATAERLV-GQGASAVLLDL   44 (265)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence            479999999999999999998 45888776543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.19  E-value=0.12  Score=40.88  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+ ++..  .+..+..           ..+.+...     .+.. +..|.+
T Consensus        28 k~~lVTGas~GIG~aia~~l~-~~G~~V~~~-~r~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~Dv~   87 (277)
T 4fc7_A           28 KVAFITGGGSGIGFRIAEIFM-RHGCHTVIA-SRSL--PRVLTAA-----------RKLAGATG-----RRCLPLSMDVR   87 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEE-ESCH--HHHHHHH-----------HHHHHHHS-----SCEEEEECCTT
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEE-eCCH--HHHHHHH-----------HHHHHhcC-----CcEEEEEcCCC
Confidence            468999999999999999997 568887754 4321  1111100           01111111     1222 335777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .++...+.+..+.+.  ++.+++-..|
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           88 APPAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            777776666655544  6788876654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.18  E-value=0.11  Score=42.72  Aligned_cols=70  Identities=16%  Similarity=0.143  Sum_probs=43.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCeeeeCCHHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~---g--~~~~~~~g-~~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      ++||+|+|+ |.||..++..+... ++ + +.++|.+..   |  .++..... ......+..++|+ +.+.      ++
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~-g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~------~a   73 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQK-NLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLA------GA   73 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGT------TC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhC------CC
Confidence            579999996 99999999888754 55 8 778885431   1  11111100 0012234555788 5554      89


Q ss_pred             cEEEEcc
Q 031341          108 AVVIDFT  114 (161)
Q Consensus       108 DVVIDfT  114 (161)
                      |+||...
T Consensus        74 D~Vi~a~   80 (322)
T 1t2d_A           74 DVVIVTA   80 (322)
T ss_dssp             SEEEECC
T ss_pred             CEEEEeC
Confidence            9999654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.18  E-value=0.12  Score=41.48  Aligned_cols=82  Identities=17%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      +|.|.|++|.+|+.+++.+. ..|.+++.+ ++..  .+..+.              .+++-..   ..+.. +..|.|.
T Consensus        33 ~vlVTGas~gIG~~la~~l~-~~G~~V~~~-~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~Dv~d   91 (301)
T 3tjr_A           33 AAVVTGGASGIGLATATEFA-RRGARLVLS-DVDQ--PALEQA--------------VNGLRGQ---GFDAHGVVCDVRH   91 (301)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ESCH--HHHHHH--------------HHHHHHT---TCCEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEEE-ECCH--HHHHHH--------------HHHHHhc---CCceEEEEccCCC
Confidence            69999999999999999998 567886654 4321  111110              0111110   01122 3467777


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      ++...+.+..+.+.  ++.+++-..|
T Consensus        92 ~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           92 LDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             HHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            77776666655544  6888877655

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.14  E-value=0.097  Score=40.26  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=28.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +-+|.|.|++|.+|+.+++.+.+..+.+++.+..
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r   37 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTAR   37 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEES
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeC
Confidence            3579999999999999999998647888776544

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=95.14  E-value=0.13  Score=46.57  Aligned_cols=93  Identities=16%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee-CC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM-SD   93 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~-~d   93 (161)
                      .||.|+|+ |..|..+++.|. ..|+.=+.++|.+.                .|++-.+.     ..+.....+..+ ..
T Consensus        18 s~VlVVGa-GGLGsevak~La-~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~   95 (640)
T 1y8q_B           18 GRVLVVGA-GGIGCELLKNLV-LTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS   95 (640)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred             CeEEEECc-CHHHHHHHHHHH-HcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence            68999996 999999999998 55776677888431                11111111     011101112111 22


Q ss_pred             H------HHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEe
Q 031341           94 L------TMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus        94 l------~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~g~~vVig  136 (161)
                      +      ++.+      ..+|+|||++.. .+-...-..|.++++|+|.+
T Consensus        96 i~~~~~~~~~~------~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~  139 (640)
T 1y8q_B           96 IMNPDYNVEFF------RQFILVMNALDNRAARNHVNRMCLAADVPLIES  139 (640)
T ss_dssp             TTSTTSCHHHH------TTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             cchhhhhHhhh------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            2      2444      379999998844 43345557889999999854

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.14  E-value=0.069  Score=42.38  Aligned_cols=52  Identities=31%  Similarity=0.376  Sum_probs=25.0

Q ss_pred             cccccccc--cceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           13 HHISQNVK--AKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        13 ~~~~~~~~--~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      ||-|..|.  -+++.|.+-..-.+ -.+.|.|++|.+|+.+++.+. ..|.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~m~~~~~-k~~lVTGas~GIG~aia~~la-~~G~~V~~~   58 (272)
T 4dyv_A            5 HHHSSGVDLGTENLYFQSMSKTGK-KIAIVTGAGSGVGRAVAVALA-GAGYGVALA   58 (272)
T ss_dssp             -----------------------C-CEEEETTTTSHHHHHHHHHHH-HTTCEEEEE
T ss_pred             ccccccccCCcceeehhhhcCCCC-CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEE
Confidence            34444443  46777766443333 357888999999999999997 558886654

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.11  E-value=0.04  Score=42.59  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+-++.|.|++|.+|+.+++.+.+..+..++. .++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~-~~~   37 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVIN-IDI   37 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEE-EES
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEE-ecc
Confidence            34579999999999999999998767877664 443

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.10  E-value=0.23  Score=39.10  Aligned_cols=88  Identities=18%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVID  112 (161)
                      -.+.|.|++|.+|+.+++.+. ..+.+++.+..+.....+.              ...+++...++. .....   +..|
T Consensus         7 k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~D   70 (274)
T 3e03_A            7 KTLFITGASRGIGLAIALRAA-RDGANVAIAAKSAVANPKL--------------PGTIHSAAAAVN-AAGGQGLALKCD   70 (274)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCCSCCTTS--------------CCCHHHHHHHHH-HHTSEEEEEECC
T ss_pred             cEEEEECCCChHHHHHHHHHH-HCCCEEEEEeccchhhhhh--------------HHHHHHHHHHHH-hcCCeEEEEeCC
Confidence            368999999999999999997 5578876544332111110              012222111000 01122   3467


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .+.++...+.+....+.  ++.+++-..|
T Consensus        71 v~~~~~v~~~~~~~~~~~g~iD~lvnnAG   99 (274)
T 3e03_A           71 IREEDQVRAAVAATVDTFGGIDILVNNAS   99 (274)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88888777766665554  6888877654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.09  E-value=0.12  Score=39.88  Aligned_cols=32  Identities=28%  Similarity=0.267  Sum_probs=26.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++. +++
T Consensus        10 k~vlITGas~giG~~~a~~l~-~~G~~V~~-~~r   41 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALA-REGAAVVV-ADI   41 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEE-EcC
Confidence            468999999999999999998 55888665 444

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.07  E-value=0.064  Score=45.89  Aligned_cols=87  Identities=20%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVID  112 (161)
                      -||.|+|. |+.|...++.+. ..|.++. ++|..... .+..+.+   .+.|++++  .+.++.+.     ..+|+||-
T Consensus        10 k~v~viG~-G~sG~s~A~~l~-~~G~~V~-~~D~~~~~~~~~~~~L---~~~gi~~~~g~~~~~~~~-----~~~d~vv~   78 (451)
T 3lk7_A           10 KKVLVLGL-ARSGEAAARLLA-KLGAIVT-VNDGKPFDENPTAQSL---LEEGIKVVCGSHPLELLD-----EDFCYMIK   78 (451)
T ss_dssp             CEEEEECC-TTTHHHHHHHHH-HTTCEEE-EEESSCGGGCHHHHHH---HHTTCEEEESCCCGGGGG-----SCEEEEEE
T ss_pred             CEEEEEee-CHHHHHHHHHHH-hCCCEEE-EEeCCcccCChHHHHH---HhCCCEEEECCChHHhhc-----CCCCEEEE
Confidence            58999995 999999887765 6788866 56743211 1111112   13466664  22334443     13898883


Q ss_pred             cc-CchhHHHHHHHHHHcCCcEE
Q 031341          113 FT-DASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       113 fT-~p~~~~~~~~~al~~g~~vV  134 (161)
                      .+ .|.. .+.+..+.+.|++++
T Consensus        79 spgi~~~-~p~~~~a~~~gi~v~  100 (451)
T 3lk7_A           79 NPGIPYN-NPMVKKALEKQIPVL  100 (451)
T ss_dssp             CTTSCTT-SHHHHHHHHTTCCEE
T ss_pred             CCcCCCC-ChhHHHHHHCCCcEE
Confidence            33 2333 345677788888865

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=95.07  E-value=0.11  Score=41.16  Aligned_cols=80  Identities=24%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (161)
                      -++.|.|++|.+|+.+++.+. ..|.+++.+ ++..  ....+.               .+.+.     .... +..|.+
T Consensus        28 k~vlVTGas~GIG~aia~~l~-~~G~~V~~~-~r~~--~~~~~~---------------~~~~~-----~~~~~~~~Dv~   83 (277)
T 4dqx_A           28 RVCIVTGGGSGIGRATAELFA-KNGAYVVVA-DVNE--DAAVRV---------------ANEIG-----SKAFGVRVDVS   83 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ESSH--HHHHHH---------------HHHHC-----TTEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEE-eCCH--HHHHHH---------------HHHhC-----CceEEEEecCC
Confidence            468999999999999999998 568887644 4321  111111               00011     1122 345677


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .++...+.+..+.+.  ++.+++-..|
T Consensus        84 d~~~v~~~~~~~~~~~g~iD~lv~nAg  110 (277)
T 4dqx_A           84 SAKDAESMVEKTTAKWGRVDVLVNNAG  110 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777666666555443  6777776544

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.04  E-value=0.075  Score=38.25  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -+|.|+|+ |++|+.+++.+.+ .+.+++.+-
T Consensus         4 ~~vlI~G~-G~vG~~la~~L~~-~g~~V~vid   33 (153)
T 1id1_A            4 DHFIVCGH-SILAINTILQLNQ-RGQNVTVIS   33 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CcEEEECC-CHHHHHHHHHHHH-CCCCEEEEE
Confidence            47999995 9999999999874 578877543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.04  E-value=0.18  Score=38.58  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         8 k~vlVTGasggiG~~~a~~l~~-~G~~V~~~~r   39 (258)
T 3afn_B            8 KRVLITGSSQGIGLATARLFAR-AGAKVGLHGR   39 (258)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEECC
Confidence            4799999999999999999985 5888775543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.02  E-value=0.15  Score=41.41  Aligned_cols=32  Identities=31%  Similarity=0.410  Sum_probs=24.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~   70 (161)
                      +||+|+|+ |.||..++..+.. .++  + +.++|.+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~-~g~~~e-V~L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVL-RGSCSE-LVLVDRD   34 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCCSE-EEEECSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCCCE-EEEEeCC
Confidence            58999996 9999999988864 455  5 4477753

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=95.01  E-value=0.1  Score=46.63  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=28.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~-~G~~V~~~~r   43 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIE-NGYDCVVADN   43 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEC
Confidence            36899999999999999999985 5788887654

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.00  E-value=0.058  Score=47.07  Aligned_cols=112  Identities=9%  Similarity=0.106  Sum_probs=72.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhc-----------CC---C-CCCeeeeCCHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCD-----------ME---Q-PLEIPVMSDLT   95 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g-----------~~---~-~~~i~v~~dl~   95 (161)
                      .+|+|-| +|++|+..++.+. ..+.+++++.|++     ..|-|..++.-           +.   . ..+.... +.+
T Consensus       240 ~~VaVQG-~GnVG~~aa~~L~-e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v-~~~  316 (456)
T 3r3j_A          240 KKCLVSG-SGNVAQYLVEKLI-EKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF-ENQ  316 (456)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHH-HHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE-CSC
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe-CCc
Confidence            6899999 6999999999886 4589999999952     34554333320           00   0 0123333 235


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +++.     .++|+++=++..+.. .+++....+++..+|++-.  ..+++..+.|    ++.+|++
T Consensus       317 ~i~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~iL----~~rGI~~  374 (456)
T 3r3j_A          317 KPWN-----IPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHIKALHKL----KQNNIIL  374 (456)
T ss_dssp             CGGG-----SCCSEEEECSCTTCBCHHHHHHHHHHTCCEEECCSSSCBCTTHHHHH----HTTTCEE
T ss_pred             cccc-----cCccEEEeCCCccchhhHHHHHHHhcCCeEEEecCCCCCCHHHHHHH----HHCCCEE
Confidence            5565     589999988776555 5788888888999999864  2455544333    3345554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.98  E-value=0.14  Score=40.52  Aligned_cols=82  Identities=18%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .+.|.|++|.+|+.+++.+. ..|.+++.+ ++..  .+..+.              .+++-..   ..++. +..|.+.
T Consensus        26 ~~lVTGas~GIG~aia~~la-~~G~~V~~~-~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~Dv~d   84 (279)
T 3sju_A           26 TAFVTGVSSGIGLAVARTLA-ARGIAVYGC-ARDA--KNVSAA--------------VDGLRAA---GHDVDGSSCDVTS   84 (279)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEEEE-ESCH--HHHHHH--------------HHHHHTT---TCCEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEEE-eCCH--HHHHHH--------------HHHHHhc---CCcEEEEECCCCC
Confidence            68999999999999999998 558887644 4321  111110              0111110   01122 2357777


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      ++...+.+..+.+.  ++.+++-..|
T Consensus        85 ~~~v~~~~~~~~~~~g~id~lv~nAg  110 (279)
T 3sju_A           85 TDEVHAAVAAAVERFGPIGILVNSAG  110 (279)
T ss_dssp             HHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEECCC
Confidence            77776666555444  6777776654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=94.97  E-value=0.12  Score=39.32  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=27.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++.+.++
T Consensus         2 k~vlITGasggiG~~~a~~l~-~~G~~v~~~~~r   34 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLA-EDGFALAIHYGQ   34 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESS
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            368999999999999999998 468888877564

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.95  E-value=0.05  Score=43.11  Aligned_cols=30  Identities=17%  Similarity=0.342  Sum_probs=25.0

Q ss_pred             eEEEEcCC--CHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAV--KEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~--G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      ++.|.|++  |.+|+.+++.+.+ .+.+++.+.
T Consensus        23 ~vlVTGas~~~gIG~~ia~~l~~-~G~~V~~~~   54 (285)
T 2p91_A           23 RALITGVANERSIAYGIAKSFHR-EGAQLAFTY   54 (285)
T ss_dssp             EEEECCCSSTTSHHHHHHHHHHH-TTCEEEEEE
T ss_pred             EEEEECCCCCCcHHHHHHHHHHH-cCCEEEEEe
Confidence            58999998  9999999999984 588877554

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=94.95  E-value=0.097  Score=40.79  Aligned_cols=32  Identities=34%  Similarity=0.399  Sum_probs=26.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++. +++
T Consensus         9 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~-~~r   40 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYV-REGATVAI-ADI   40 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEE-EeC
Confidence            368999999999999999998 55888664 444

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.95  E-value=0.017  Score=46.02  Aligned_cols=108  Identities=10%  Similarity=0.037  Sum_probs=59.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (161)
                      ++||+|+| .|.||..+++.+. ..++++++...+... .+. +++..      |. +.+.+++..+.....++ +|+|.
T Consensus         6 ~mkI~IIG-~G~~G~sLA~~L~-~~G~~V~~~~~~~~~-~~a-Dilav------P~-~ai~~vl~~l~~~l~~g~ivvd~   74 (232)
T 3dfu_A            6 RLRVGIFD-DGSSTVNMAEKLD-SVGHYVTVLHAPEDI-RDF-ELVVI------DA-HGVEGYVEKLSAFARRGQMFLHT   74 (232)
T ss_dssp             CCEEEEEC-CSCCCSCHHHHHH-HTTCEEEECSSGGGG-GGC-SEEEE------CS-SCHHHHHHHHHTTCCTTCEEEEC
T ss_pred             CcEEEEEe-eCHHHHHHHHHHH-HCCCEEEEecCHHHh-ccC-CEEEE------cH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence            47999999 5999999999987 458887754433110 000 01111      11 24444443322112344 78887


Q ss_pred             c--CchhHHHHHHHHHHcCCcEEEe-----C----CCCCHHHHHHHHHHhhhcC
Q 031341          114 T--DASTVYDNVKQATAFGMRSVVY-----V----PHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       114 T--~p~~~~~~~~~al~~g~~vVig-----t----tg~~~e~~~~L~~~A~~~~  156 (161)
                      +  .+....+   .+.+.|..+|-+     .    ++.+++..+.+.++.+..+
T Consensus        75 sgs~~~~vl~---~~~~~g~~fvg~HPm~g~~~~i~a~d~~a~~~l~~L~~~lG  125 (232)
T 3dfu_A           75 SLTHGITVMD---PLETSGGIVMSAHPIGQDRWVASALDELGETIVGLLVGELG  125 (232)
T ss_dssp             CSSCCGGGGH---HHHHTTCEEEEEEEEETTEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHH---HHHhCCCcEEEeeeCCCCceeeeCCCHHHHHHHHHHHHHhC
Confidence            5  3333333   333677754422     2    1235566778888877754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.94  E-value=0.04  Score=47.65  Aligned_cols=33  Identities=21%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      .|||.|+|+ |++|+.+++.|. ..+.+++ ++|.+
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~-~~~~~v~-vId~d   35 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLV-GENNDIT-IVDKD   35 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTC-STTEEEE-EEESC
T ss_pred             cCEEEEECC-CHHHHHHHHHHH-HCCCCEE-EEECC
Confidence            589999995 999999999875 6788866 77854

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.94  E-value=0.2  Score=38.71  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=27.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC--cEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~--~eLvavvd   68 (161)
                      +.+|.|.|++|.+|+.+++.+.+...  .+++.+..
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r   56 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCR   56 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEES
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEec
Confidence            35799999999999999999985432  78776544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.94  E-value=0.016  Score=47.57  Aligned_cols=96  Identities=17%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      =+|.|+|++|.+|...++.+. ..+.+++++..+.. ..+...-+|..   .+.-+ .++.+.+.++.....+|+++|++
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~-~~Ga~Vi~~~~~~~-~~~~~~~~ga~---~v~~~~~~~~~~v~~~~~~~g~Dvvid~~  235 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAK-GMGAKVIAVVNRTA-ATEFVKSVGAD---IVLPLEEGWAKAVREATGGAGVDMVVDPI  235 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSGG-GHHHHHHHTCS---EEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeCCHH-HHHHHHhcCCc---EEecCchhHHHHHHHHhCCCCceEEEECC
Confidence            479999999999999988775 66888877665322 11222222221   11111 34444332211123699999988


Q ss_pred             CchhHHHHHHHHHHcCCcEEEe
Q 031341          115 DASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVig  136 (161)
                      ........+......|.-+++|
T Consensus       236 g~~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          236 GGPAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             C--CHHHHHHTEEEEEEEEEC-
T ss_pred             chhHHHHHHHhhcCCCEEEEEE
Confidence            6543333333323334444444

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=94.92  E-value=0.2  Score=39.30  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=27.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+. ..|.+++.+..
T Consensus        30 k~vlITGas~gIG~~la~~l~-~~G~~V~~~~r   61 (271)
T 4iin_A           30 KNVLITGASKGIGAEIAKTLA-SMGLKVWINYR   61 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeC
Confidence            479999999999999999998 56888776554

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.91  E-value=0.06  Score=40.16  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|+|++|.+|+.+++.+. ..+.+++++..
T Consensus        40 ~~vlV~Ga~ggiG~~~~~~~~-~~G~~V~~~~~   71 (198)
T 1pqw_A           40 ERVLIHSATGGVGMAAVSIAK-MIGARIYTTAG   71 (198)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HHTCEEEEEES
T ss_pred             CEEEEeeCCChHHHHHHHHHH-HcCCEEEEEeC
Confidence            479999989999999998876 45788765543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=94.87  E-value=0.29  Score=37.95  Aligned_cols=30  Identities=27%  Similarity=0.376  Sum_probs=25.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .+.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         9 ~~lVTGas~gIG~aia~~l~-~~G~~V~~~~   38 (257)
T 3tpc_A            9 VFIVTGASSGLGAAVTRMLA-QEGATVLGLD   38 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEEEe
Confidence            58999999999999999998 5688876543

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.84  E-value=0.18  Score=39.09  Aligned_cols=32  Identities=9%  Similarity=0.131  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -+|.|.|++|.+|+.+++.+. ..|.+++.+..
T Consensus        23 k~vlITGas~gIG~~la~~l~-~~G~~V~~~~r   54 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFK-SKSWNTISIDF   54 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC
Confidence            579999999999999999997 56888665543

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=94.83  E-value=0.22  Score=43.30  Aligned_cols=112  Identities=14%  Similarity=0.188  Sum_probs=72.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC--------------CCCCeeeeCCHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME--------------QPLEIPVMSDLTM   96 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~--------------~~~~i~v~~dl~~   96 (161)
                      .||+|-| +|++|...++.+. ..|.+++++.|+.     ..|.+..++.-+.              .+.+.... +-++
T Consensus       236 k~vaVQG-~GnVG~~aa~~L~-e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-~~~~  312 (450)
T 4fcc_A          236 MRVSVSG-SGNVAQYAIEKAM-EFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-EGQQ  312 (450)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-ETCC
T ss_pred             CEEEEeC-CChHHHHHHHHHH-hcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-cCcc
Confidence            6899999 7999999999886 6799999999853     3444433221000              00122211 2244


Q ss_pred             HHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341           97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ++.     .++|+++=+..-... .+++....++|+.+|++-.  ..++|..+.|    ++.+|+|
T Consensus       313 i~~-----~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~iL----~~rGIl~  369 (450)
T 4fcc_A          313 PWS-----VPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELF----QQAGVLF  369 (450)
T ss_dssp             GGG-----SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHH----HHTTCEE
T ss_pred             ccc-----CCccEEeeccccccccHHHHHHHHhcCceEEecCCCCCCCHHHHHHH----HHCCCEE
Confidence            454     589999977654444 6888888899999999843  3566655444    3456665

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.82  E-value=0.04  Score=45.42  Aligned_cols=73  Identities=11%  Similarity=0.138  Sum_probs=45.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecC----C---CCcchhhhhcC--CCCCCeeeeCCHHHHH
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSH----S---VGEDIGMVCDM--EQPLEIPVMSDLTMVL   98 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~------eLvavvd~~----~---~g~~~~~~~g~--~~~~~i~v~~dl~~~l   98 (161)
                      .++||+|+|++|.+|+.++..+....-+      +|+ .+|..    .   .| ...++...  .-..++..++++.+++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~-l~Di~~~~~~~~~~g-~~~dl~~~~~~~~~~i~~~~~~~~al   81 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQ-LLEIPNEKAQKALQG-VMMEIDDCAFPLLAGMTAHADPMTAF   81 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEE-EECCSCHHHHHHHHH-HHHHHHTTTCTTEEEEEEESSHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEE-EEcCCCccccccchh-hHHHHhhhcccccCcEEEecCcHHHh
Confidence            4589999998899999999988754322      565 47754    1   11 01112110  0012455568888888


Q ss_pred             hcccccCCccEEEEcc
Q 031341           99 GSISQSKARAVVIDFT  114 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT  114 (161)
                      .      ++|+||-..
T Consensus        82 ~------~aD~Vi~~a   91 (329)
T 1b8p_A           82 K------DADVALLVG   91 (329)
T ss_dssp             T------TCSEEEECC
T ss_pred             C------CCCEEEEeC
Confidence            5      899988544

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.81  E-value=0.33  Score=38.46  Aligned_cols=88  Identities=22%  Similarity=0.228  Sum_probs=51.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVID  112 (161)
                      -.+.|.|++|.+|+.+++.+. ..+.+++.+..+.....+.              ...++++..++. +...+   +..|
T Consensus        10 k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~D   73 (285)
T 3sc4_A           10 KTMFISGGSRGIGLAIAKRVA-ADGANVALVAKSAEPHPKL--------------PGTIYTAAKEIE-EAGGQALPIVGD   73 (285)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-TTTCEEEEEESCCSCCSSS--------------CCCHHHHHHHHH-HHTSEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECChhhhhhh--------------hHHHHHHHHHHH-hcCCcEEEEECC
Confidence            368999999999999999997 5688877554432211110              011222111100 01222   2347


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .+.++...+.+....+.  ++.+++-..|
T Consensus        74 v~~~~~v~~~~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           74 IRDGDAVAAAVAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88888777766655554  7888877654

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.78  E-value=0.086  Score=43.48  Aligned_cols=70  Identities=21%  Similarity=0.230  Sum_probs=42.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCC--CCcchhhhhcCCCCCCeeee----CCHHHHHhcccccCCcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARA  108 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~--~g~~~~~~~g~~~~~~i~v~----~dl~~~l~~~~~~~~~D  108 (161)
                      |||+|+||+|.+|..++..+... +-..-+..+|...  .|+ .-++...  +....+.    ++..+.+.      ++|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~-a~Dl~~~--~~~~~v~~~~~~~~~~~~~------~aD   71 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGV-AVDLSHI--PTAVKIKGFSGEDATPALE------GAD   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHH-HHHHHTS--CSSEEEEEECSSCCHHHHT------TCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhH-HHHhhCC--CCCceEEEecCCCcHHHhC------CCC
Confidence            69999998899999999988765 4444455778543  111 1223222  2333343    24445553      899


Q ss_pred             EEEEcc
Q 031341          109 VVIDFT  114 (161)
Q Consensus       109 VVIDfT  114 (161)
                      +||-.+
T Consensus        72 ivii~a   77 (312)
T 3hhp_A           72 VVLISA   77 (312)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            988544

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=94.73  E-value=0.12  Score=39.98  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+ ++
T Consensus        10 k~vlITGas~gIG~~~a~~l~-~~G~~V~~~-~r   41 (261)
T 3n74_A           10 KVALITGAGSGFGEGMAKRFA-KGGAKVVIV-DR   41 (261)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ES
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEE-cC
Confidence            469999999999999999998 558886654 44

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.71  E-value=0.099  Score=41.57  Aligned_cols=30  Identities=30%  Similarity=0.308  Sum_probs=25.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      -++.|.|++|.+|+.+++.+. ..|.+++.+
T Consensus        30 k~vlVTGas~gIG~aia~~la-~~G~~V~~~   59 (277)
T 3gvc_A           30 KVAIVTGAGAGIGLAVARRLA-DEGCHVLCA   59 (277)
T ss_dssp             CEEEETTTTSTHHHHHHHHHH-HTTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEE
Confidence            358999999999999999987 558887654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.69  E-value=0.026  Score=46.26  Aligned_cols=94  Identities=17%  Similarity=0.092  Sum_probs=51.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      =+|.|+|++|.+|...++.+. ..+.+++++ .+... .+...-+|..  . +.-..++.+.+.+......+|+++|++.
T Consensus       152 ~~VlV~Ga~g~iG~~~~q~a~-~~Ga~Vi~~-~~~~~-~~~~~~lGa~--~-i~~~~~~~~~~~~~~~~~g~D~vid~~g  225 (343)
T 3gaz_A          152 QTVLIQGGGGGVGHVAIQIAL-ARGARVFAT-ARGSD-LEYVRDLGAT--P-IDASREPEDYAAEHTAGQGFDLVYDTLG  225 (343)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ECHHH-HHHHHHHTSE--E-EETTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred             CEEEEecCCCHHHHHHHHHHH-HCCCEEEEE-eCHHH-HHHHHHcCCC--E-eccCCCHHHHHHHHhcCCCceEEEECCC
Confidence            479999988999999988765 778898888 43211 1111222321  1 2112334443322111247999999987


Q ss_pred             chhHHHHHHHHHHc-CCcEEEe
Q 031341          116 ASTVYDNVKQATAF-GMRSVVY  136 (161)
Q Consensus       116 p~~~~~~~~~al~~-g~~vVig  136 (161)
                      ... .+.+..+++. |.-+++|
T Consensus       226 ~~~-~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          226 GPV-LDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             THH-HHHHHHHEEEEEEEEESC
T ss_pred             cHH-HHHHHHHHhcCCeEEEEc
Confidence            543 3333344444 3433344

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=94.68  E-value=0.26  Score=40.02  Aligned_cols=34  Identities=24%  Similarity=0.192  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +||+|+||+|.+|+.++..+....-..=+..+|.
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di   34 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcC
Confidence            5999999889999999998875433222446675

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.67  E-value=0.34  Score=40.01  Aligned_cols=95  Identities=13%  Similarity=0.098  Sum_probs=55.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      =+|.|+|++|.+|...++.+. ..+.+++++.+...  .+...-+|..   .+.-+  .++.+.+.++. ..++|+++|+
T Consensus       166 ~~VlV~Ga~G~vG~~a~qla~-~~Ga~Vi~~~~~~~--~~~~~~lGa~---~vi~~~~~~~~~~v~~~t-~g~~d~v~d~  238 (371)
T 3gqv_A          166 VYVLVYGGSTATATVTMQMLR-LSGYIPIATCSPHN--FDLAKSRGAE---EVFDYRAPNLAQTIRTYT-KNNLRYALDC  238 (371)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECGGG--HHHHHHTTCS---EEEETTSTTHHHHHHHHT-TTCCCEEEES
T ss_pred             cEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCHHH--HHHHHHcCCc---EEEECCCchHHHHHHHHc-cCCccEEEEC
Confidence            479999988999999888765 67889888764211  2222222211   11112  23333332211 1249999999


Q ss_pred             cCchhHHHHHHHHH--HcCCcEEEeC
Q 031341          114 TDASTVYDNVKQAT--AFGMRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al--~~g~~vVigt  137 (161)
                      +......+.+..++  ..|.-+.+|.
T Consensus       239 ~g~~~~~~~~~~~l~~~~G~iv~~g~  264 (371)
T 3gqv_A          239 ITNVESTTFCFAAIGRAGGHYVSLNP  264 (371)
T ss_dssp             SCSHHHHHHHHHHSCTTCEEEEESSC
T ss_pred             CCchHHHHHHHHHhhcCCCEEEEEec
Confidence            87655566666666  3455555553

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.67  E-value=0.27  Score=37.93  Aligned_cols=31  Identities=29%  Similarity=0.425  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         6 k~vlVTGas~giG~~ia~~l~-~~G~~V~~~~   36 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFA-KEGARLVACD   36 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEe
Confidence            469999999999999999997 4688877553

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=94.67  E-value=0.042  Score=44.88  Aligned_cols=72  Identities=11%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-------EEEEEEecCCC-Cc---chhhhhc--CCCCCCeeeeCCHHHHHhcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHSV-GE---DIGMVCD--MEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~-------eLvavvd~~~~-g~---~~~~~~g--~~~~~~i~v~~dl~~~l~~~  101 (161)
                      ++||.|+|++|.+|+.++..+.. .+.       +++ ++|+... ..   ...++..  ..-..++...+++.+++.  
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~-~g~~~~~~~~ev~-l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~--   79 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAA-GEMLGKDQPVILQ-LLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK--   79 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHT-TTTTCTTCCEEEE-EECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCCCCCCCCEEE-EEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC--
Confidence            48999999999999999999876 443       665 4674310 00   0111111  000013444567777774  


Q ss_pred             cccCCccEEEEcc
Q 031341          102 SQSKARAVVIDFT  114 (161)
Q Consensus       102 ~~~~~~DVVIDfT  114 (161)
                          ++|+||-+.
T Consensus        80 ----~~D~Vih~A   88 (327)
T 1y7t_A           80 ----DADYALLVG   88 (327)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----CCCEEEECC
Confidence                799999764

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=94.67  E-value=0.42  Score=36.86  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         8 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~   38 (249)
T 2ew8_A            8 KLAVITGGANGIGRAIAERFA-VEGADIAIAD   38 (249)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEc
Confidence            369999999999999999998 4588876543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.66  E-value=0.1  Score=40.30  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..|.+++.+.
T Consensus         4 k~vlVTGas~GIG~a~a~~l~-~~G~~V~~~~   34 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLV-ERGHQVSMMG   34 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEE
Confidence            368999999999999999998 5688876543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=94.65  E-value=0.17  Score=38.66  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         7 k~vlVtGasggiG~~~a~~l~~-~G~~V~~~~   37 (251)
T 1zk4_A            7 KVAIITGGTLGIGLAIATKFVE-EGAKVMITG   37 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             cEEEEeCCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            4699999999999999999984 588877544

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.64  E-value=0.16  Score=39.58  Aligned_cols=32  Identities=31%  Similarity=0.494  Sum_probs=27.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +|.|.|++|.+|+.+++.+. ..+.+++...++
T Consensus        28 ~vlVTGas~gIG~~la~~l~-~~G~~v~i~~~r   59 (267)
T 4iiu_A           28 SVLVTGASKGIGRAIARQLA-ADGFNIGVHYHR   59 (267)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             EEEEECCCChHHHHHHHHHH-HCCCEEEEEeCC
Confidence            69999999999999999997 568888766654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.64  E-value=0.076  Score=43.06  Aligned_cols=97  Identities=15%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      =+|.|.|+ |.+|...++.+. .-+.+.+.++++.....+...-+|..   .+..+  .+..+....+......|+++|+
T Consensus       162 ~~VlV~Ga-G~vG~~aiq~ak-~~G~~~vi~~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~~~~~~~g~d~v~d~  236 (346)
T 4a2c_A          162 KNVIIIGA-GTIGLLAIQCAV-ALGAKSVTAIDISSEKLALAKSFGAM---QTFNSSEMSAPQMQSVLRELRFNQLILET  236 (346)
T ss_dssp             SEEEEECC-SHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHGGGCSSEEEEEC
T ss_pred             CEEEEECC-CCcchHHHHHHH-HcCCcEEEEEechHHHHHHHHHcCCe---EEEeCCCCCHHHHHHhhcccCCccccccc
Confidence            47999996 999998887654 66777666677432111222222321   11112  2333333222223568999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEE-EeC
Q 031341          114 TDASTVYDNVKQATAFGMRSV-VYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vV-igt  137 (161)
                      +......+.+..+++.+-.++ +|.
T Consensus       237 ~G~~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          237 AGVPQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             SCSHHHHHHHHHHCCTTCEEEECCC
T ss_pred             ccccchhhhhhheecCCeEEEEEec
Confidence            865555555555555554444 454

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.62  E-value=0.21  Score=39.47  Aligned_cols=83  Identities=20%  Similarity=0.257  Sum_probs=48.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (161)
                      -.+.|.|++|.+|+.+++.+. ..|.+++.+ ++..  ....+..           ..+++.-      .+.. +..|.+
T Consensus        29 k~~lVTGas~GIG~aia~~la-~~G~~V~~~-~r~~--~~~~~~~-----------~~~~~~~------~~~~~~~~Dv~   87 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELA-RRGAMVIGT-ATTE--AGAEGIG-----------AAFKQAG------LEGRGAVLNVN   87 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEE-ESSH--HHHHHHH-----------HHHHHHT------CCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEE-eCCH--HHHHHHH-----------HHHHhcC------CcEEEEEEeCC
Confidence            368889999999999999997 558887654 4321  1111110           0111110      1122 446777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .++...+.+..+.+.  ++.+++-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (270)
T 3ftp_A           88 DATAVDALVESTLKEFGALNVLVNNAG  114 (270)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777776666555443  6788776654

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}

Probab=94.60  E-value=0.082  Score=41.84  Aligned_cols=73  Identities=14%  Similarity=-0.019  Sum_probs=46.9

Q ss_pred             CCCeeEEEE--cCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-------C-------HH
Q 031341           33 QSNIKVIIN--GAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-------D-------LT   95 (161)
Q Consensus        33 ~~~ikV~Vi--Ga~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-------d-------l~   95 (161)
                      ..|+||++.  | +|.....+++.+.+.. ++++++|+.+... ....+++   .+.|+|++.       +       +.
T Consensus        20 ~~~~rI~~l~SG-~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~-~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~   94 (229)
T 3auf_A           20 GHMIRIGVLISG-SGTNLQAILDGCREGRIPGRVAVVISDRAD-AYGLERA---RRAGVDALHMDPAAYPSRTAFDAALA   94 (229)
T ss_dssp             TTCEEEEEEESS-CCHHHHHHHHHHHTTSSSEEEEEEEESSTT-CHHHHHH---HHTTCEEEECCGGGSSSHHHHHHHHH
T ss_pred             CCCcEEEEEEeC-CcHHHHHHHHHHHhCCCCCeEEEEEcCCCc-hHHHHHH---HHcCCCEEEECcccccchhhccHHHH
Confidence            347899999  8 7999999999887543 6899999975321 1222333   256777641       1       11


Q ss_pred             HHHhcccccCCccEEEEcc
Q 031341           96 MVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT  114 (161)
                      +.+.+    .++|++|-+.
T Consensus        95 ~~l~~----~~~Dliv~ag  109 (229)
T 3auf_A           95 ERLQA----YGVDLVCLAG  109 (229)
T ss_dssp             HHHHH----TTCSEEEESS
T ss_pred             HHHHh----cCCCEEEEcC
Confidence            23332    5899888765

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=94.60  E-value=0.078  Score=47.26  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=45.1

Q ss_pred             ccccccccccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeee
Q 031341           12 MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPV   90 (161)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-~~g~~~~~~~g~~~~~~i~v   90 (161)
                      |||-+|+-.....-...+    + -.+.|.|++|.+|+.+++.+. ..|.+++...... ..+.      +..       
T Consensus         1 ~~~~~~~~~~~~~~~~l~----g-k~~lVTGas~GIG~aiA~~La-~~Ga~Vv~~~r~~~~~~~------~~~-------   61 (613)
T 3oml_A            1 MHHHHHHMSSSDGKLRYD----G-RVAVVTGAGAGLGREYALLFA-ERGAKVVVNDLGGTHSGD------GAS-------   61 (613)
T ss_dssp             --------------CCCT----T-CEEEETTTTSHHHHHHHHHHH-HTTCEEEEC-------------------------
T ss_pred             CCCCcccccCcccccCCC----C-CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcccccc------cCC-------
Confidence            788777654432221111    1 358889999999999999997 5688877543211 0000      000       


Q ss_pred             eCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341           91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      ....+++.+++. .....++.|.+.++...+.+..+.+.  ++.+++-..|
T Consensus        62 ~~~~~~~~~~i~-~~~~~~~~D~~d~~~~~~~~~~~~~~~g~iDiLVnnAG  111 (613)
T 3oml_A           62 QRAADIVVDEIR-KAGGEAVADYNSVIDGAKVIETAIKAFGRVDILVNNAG  111 (613)
T ss_dssp             --CHHHHHHHHH-HTTCCEEECCCCGGGHHHHHC----------CEECCCC
T ss_pred             HHHHHHHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence            011111111100 13456778888877666666554443  5777765543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=94.57  E-value=0.18  Score=39.61  Aligned_cols=80  Identities=20%  Similarity=0.206  Sum_probs=47.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++. +++...  +..+.               .+.+.     .+.. +..|.+
T Consensus        12 k~vlVTGas~gIG~aia~~l~-~~G~~V~~-~~r~~~--~~~~~---------------~~~~~-----~~~~~~~~Dv~   67 (271)
T 3tzq_B           12 KVAIITGACGGIGLETSRVLA-RAGARVVL-ADLPET--DLAGA---------------AASVG-----RGAVHHVVDLT   67 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-EECTTS--CHHHH---------------HHHHC-----TTCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEE-EcCCHH--HHHHH---------------HHHhC-----CCeEEEECCCC
Confidence            368999999999999999997 56888664 454321  11111               00111     1122 345677


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .++...+.+..+.+.  ++.+++-..|
T Consensus        68 ~~~~v~~~~~~~~~~~g~id~lv~nAg   94 (271)
T 3tzq_B           68 NEVSVRALIDFTIDTFGRLDIVDNNAA   94 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777666655554444  6777766544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.57  E-value=0.043  Score=45.49  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeeee----CCHHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~g~~~~~~~g~~~~~~i~v~----~dl~~~l~~~~~~~~~DVV  110 (161)
                      -+|.|+|+ |.+|...++.+. .-+. ++++ +++.....+...-+|..   .+.-+    .++.+.+.++.. ..+|++
T Consensus       195 ~~VlV~Ga-G~vG~~a~q~a~-~~Ga~~Vi~-~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~i~~~~~-gg~D~v  267 (378)
T 3uko_A          195 SNVAIFGL-GTVGLAVAEGAK-TAGASRIIG-IDIDSKKYETAKKFGVN---EFVNPKDHDKPIQEVIVDLTD-GGVDYS  267 (378)
T ss_dssp             CCEEEECC-SHHHHHHHHHHH-HHTCSCEEE-ECSCTTHHHHHHTTTCC---EEECGGGCSSCHHHHHHHHTT-SCBSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCCeEEE-EcCCHHHHHHHHHcCCc---EEEccccCchhHHHHHHHhcC-CCCCEE
Confidence            46999997 999999888765 5577 5654 44322112222222221   11111    234444332211 269999


Q ss_pred             EEccCchhHHHHHHHHHHc--CCcEEEeC
Q 031341          111 IDFTDASTVYDNVKQATAF--GMRSVVYV  137 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~--g~~vVigt  137 (161)
                      +|++......+.+..+++.  |.-+++|.
T Consensus       268 id~~g~~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          268 FECIGNVSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             EECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             EECCCCHHHHHHHHHHhhccCCEEEEEcc
Confidence            9999765566666666665  55555664

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.55  E-value=0.062  Score=45.12  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=26.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ...+|+|+|+ |.+|+.+++.+. .-+++ |-++|+.
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~-~~Ga~-V~~~d~~  204 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATAK-RLGAV-VMATDVR  204 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HTTCE-EEEECSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-HCCCE-EEEEeCC
Confidence            3479999995 999999999876 45677 6677754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.53  E-value=0.065  Score=44.62  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=44.7

Q ss_pred             eCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhccc
Q 031341           28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSIS  102 (161)
Q Consensus        28 ~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~  102 (161)
                      ++++...++||+|+|+ |.||..++..+....-..-+.++|...   .|  .|+.....+.....+...+|+++ +    
T Consensus        12 ~~~~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~----   85 (331)
T 4aj2_A           12 LKEEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-T----   85 (331)
T ss_dssp             CC---CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-G----
T ss_pred             cccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-h----
Confidence            3445566799999996 999999998887554333355788532   11  12222111110122333567765 4    


Q ss_pred             ccCCccEEEEcc
Q 031341          103 QSKARAVVIDFT  114 (161)
Q Consensus       103 ~~~~~DVVIDfT  114 (161)
                        .++|+||...
T Consensus        86 --~~aDiVvi~a   95 (331)
T 4aj2_A           86 --ANSKLVIITA   95 (331)
T ss_dssp             --TTEEEEEECC
T ss_pred             --CCCCEEEEcc
Confidence              3899988543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.53  E-value=0.17  Score=39.65  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=49.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++....+..  ....+               +.+.+...  ..+.. +..|.+
T Consensus        19 k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~~~~~--~~~~~---------------~~~~~~~~--~~~~~~~~~Dv~   78 (270)
T 3is3_A           19 KVALVTGSGRGIGAAVAVHLG-RLGAKVVVNYANST--KDAEK---------------VVSEIKAL--GSDAIAIKADIR   78 (270)
T ss_dssp             CEEEESCTTSHHHHHHHHHHH-HTTCEEEEEESSCH--HHHHH---------------HHHHHHHT--TCCEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCH--HHHHH---------------HHHHHHhc--CCcEEEEEcCCC
Confidence            468999999999999999987 56888876554321  11111               11111100  01122 345777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .++...+.+..+.+.  ++.+++-..|
T Consensus        79 ~~~~v~~~~~~~~~~~g~id~lvnnAg  105 (270)
T 3is3_A           79 QVPEIVKLFDQAVAHFGHLDIAVSNSG  105 (270)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777776666655544  6788876554

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=94.53  E-value=0.17  Score=40.05  Aligned_cols=32  Identities=16%  Similarity=0.215  Sum_probs=26.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++. +++
T Consensus        30 k~vlVTGas~gIG~aia~~L~-~~G~~V~~-~~r   61 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLL-EAGARVFI-CAR   61 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-ECS
T ss_pred             CEEEEeCCCChHHHHHHHHHH-HCCCEEEE-EeC
Confidence            469999999999999999998 45788664 444

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.52  E-value=0.46  Score=37.31  Aligned_cols=94  Identities=19%  Similarity=0.265  Sum_probs=51.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVID  112 (161)
                      -.+.|.|++|.+|+.+++.+. ..+.+++.+..+........ +.    ...   ...++++...+. +....   +..|
T Consensus        16 k~~lVTGas~gIG~a~a~~la-~~G~~V~~~~r~~~~~~~~~-~~----~~~---~~~~~~~~~~~~-~~~~~~~~~~~D   85 (280)
T 3pgx_A           16 RVAFITGAARGQGRSHAVRLA-AEGADIIACDICAPVSASVT-YA----PAS---PEDLDETARLVE-DQGRKALTRVLD   85 (280)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECCSCCCTTCC-SC----CCC---HHHHHHHHHHHH-TTTCCEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEecccccccccc-cc----ccC---HHHHHHHHHHHH-hcCCeEEEEEcC
Confidence            368999999999999999997 56888775443211110000 00    000   011122111100 01222   3457


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .+.++...+.+..+.+.  ++.+++-..|
T Consensus        86 v~~~~~v~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           86 VRDDAALRELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88888777766655544  6888887654

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=94.52  E-value=0.28  Score=39.93  Aligned_cols=87  Identities=16%  Similarity=0.204  Sum_probs=52.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .|.|.|++|.+|+.+++.+. ..|.++++...+ ..+.+...+            ..+.+.+...  ..+.. +..|.|.
T Consensus         7 ~vlVTGas~GIG~aia~~L~-~~G~~V~~~~r~-~~~r~~~~~------------~~l~~~~~~~--~~~~~~~~~Dvtd   70 (324)
T 3u9l_A            7 IILITGASSGFGRLTAEALA-GAGHRVYASMRD-IVGRNASNV------------EAIAGFARDN--DVDLRTLELDVQS   70 (324)
T ss_dssp             EEEESSCSSHHHHHHHHHHH-HTTCEEEEEESC-TTTTTHHHH------------HHHHHHHHHH--TCCEEEEECCTTC
T ss_pred             EEEEECCCcHHHHHHHHHHH-HCCCEEEEecCc-ccccCHHHH------------HHHHHHHHhc--CCcEEEEEeecCC
Confidence            58899999999999999998 568998876653 222221111            0111111100  01222 3457787


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      ++...+.+..+.+.  ++.+|+-..|
T Consensus        71 ~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           71 QVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77777666655544  6888877655

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=94.51  E-value=0.27  Score=38.06  Aligned_cols=85  Identities=14%  Similarity=0.197  Sum_probs=50.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (161)
                      +-++.|.|++|.+|+.+++.+. ..+.+++.+.++...  ...               .+.+.+...  ..+.. +..|.
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~-~~G~~v~~~~~~~~~--~~~---------------~~~~~~~~~--~~~~~~~~~Dl   66 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLL-AKGYSVTVTYHSDTT--AME---------------TMKETYKDV--EERLQFVQADV   66 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH--HHH---------------HHHHHTGGG--GGGEEEEECCT
T ss_pred             cCEEEEeCCCchhHHHHHHHHH-HCCCEEEEEcCCChH--HHH---------------HHHHHHHhc--CCceEEEEecC
Confidence            3468999999999999999998 558888866554211  000               011111100  01122 34567


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      +.++...+.+....+.  ++.+|+-..|
T Consensus        67 ~~~~~v~~~~~~~~~~~g~id~lv~~Ag   94 (264)
T 3i4f_A           67 TKKEDLHKIVEEAMSHFGKIDFLINNAG   94 (264)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            7777766666555444  6777776655

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.49  E-value=0.37  Score=38.57  Aligned_cols=30  Identities=33%  Similarity=0.494  Sum_probs=25.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      ++.|.|++|.+|+.+++.+. ..|.+++.+.
T Consensus        43 ~vlVTGas~GIG~aia~~la-~~G~~V~~~~   72 (293)
T 3rih_A           43 SVLVTGGTKGIGRGIATVFA-RAGANVAVAA   72 (293)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEE
Confidence            68999999999999999997 5688877543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.49  E-value=0.1  Score=42.35  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=26.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +|.|.|++|.+|+.+++.+. ..|.+++.+..
T Consensus        10 ~vlVTGas~gIG~~la~~l~-~~G~~Vv~~~r   40 (319)
T 3ioy_A           10 TAFVTGGANGVGIGLVRQLL-NQGCKVAIADI   40 (319)
T ss_dssp             EEEEETTTSTHHHHHHHHHH-HTTCEEEEEES
T ss_pred             EEEEcCCchHHHHHHHHHHH-HCCCEEEEEEC
Confidence            69999999999999999998 56888775544

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=94.46  E-value=0.32  Score=37.70  Aligned_cols=31  Identities=39%  Similarity=0.380  Sum_probs=25.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus        13 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~   43 (263)
T 3ak4_A           13 RKAIVTGGSKGIGAAIARALD-KAGATVAIAD   43 (263)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHH-HCCCEEEEEe
Confidence            479999999999999999997 4678876543

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=94.46  E-value=0.49  Score=36.98  Aligned_cols=32  Identities=31%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         9 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r   40 (264)
T 2dtx_A            9 KVVIVTGASMGIGRAIAERFV-DEGSKVIDLSI   40 (264)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEec
Confidence            469999999999999999998 45888775543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.46  E-value=0.043  Score=44.66  Aligned_cols=33  Identities=12%  Similarity=0.170  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      .+|+|+|+ |.||+.++..+.+ .++.-+-+++++
T Consensus       142 ~~vlVlGa-Gg~g~aia~~L~~-~G~~~V~v~nR~  174 (297)
T 2egg_A          142 KRILVIGA-GGGARGIYFSLLS-TAAERIDMANRT  174 (297)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHT-TTCSEEEEECSS
T ss_pred             CEEEEECc-HHHHHHHHHHHHH-CCCCEEEEEeCC
Confidence            58999995 9999999999874 576334467764

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=94.46  E-value=0.1  Score=40.51  Aligned_cols=81  Identities=20%  Similarity=0.342  Sum_probs=47.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.. ++..  ....+               +.+.+..    ...-+..|.+.
T Consensus        10 k~~lVTGas~gIG~a~a~~l~-~~G~~V~~~-~r~~--~~~~~---------------~~~~~~~----~~~~~~~Dv~d   66 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLA-ERGAKVIGT-ATSE--SGAQA---------------ISDYLGD----NGKGMALNVTN   66 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHH-HTTCEEEEE-ESSH--HHHHH---------------HHHHHGG----GEEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEE-eCCH--HHHHH---------------HHHHhcc----cceEEEEeCCC
Confidence            368999999999999999987 568887654 4321  11111               1111110    01113456777


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      ++...+.+..+.+.  ++.+++-..|
T Consensus        67 ~~~v~~~~~~~~~~~g~iD~lv~nAg   92 (248)
T 3op4_A           67 PESIEAVLKAITDEFGGVDILVNNAG   92 (248)
T ss_dssp             HHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77666655554443  6777776554

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.45  E-value=0.038  Score=48.59  Aligned_cols=84  Identities=14%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      --+|+|+| .|.||+.+++.+. .-+++++ ++|+..  .+.....    ..|+. +.++++++.      .+|+||+++
T Consensus       274 GktV~IiG-~G~IG~~~A~~lk-a~Ga~Vi-v~d~~~--~~~~~A~----~~Ga~-~~~l~e~l~------~aDvVi~at  337 (494)
T 3ce6_A          274 GKKVLICG-YGDVGKGCAEAMK-GQGARVS-VTEIDP--INALQAM----MEGFD-VVTVEEAIG------DADIVVTAT  337 (494)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHH----HTTCE-ECCHHHHGG------GCSEEEECS
T ss_pred             cCEEEEEc-cCHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHH----HcCCE-EecHHHHHh------CCCEEEECC
Confidence            36899999 5999999999887 4578754 666432  1111111    22333 347888774      799999987


Q ss_pred             Cchh-HHHHHHHHHHcCCcEE
Q 031341          115 DAST-VYDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~-~~~~~~~al~~g~~vV  134 (161)
                      .... ........++.|-.++
T Consensus       338 gt~~~i~~~~l~~mk~ggilv  358 (494)
T 3ce6_A          338 GNKDIIMLEHIKAMKDHAILG  358 (494)
T ss_dssp             SSSCSBCHHHHHHSCTTCEEE
T ss_pred             CCHHHHHHHHHHhcCCCcEEE
Confidence            4333 3323444556665544

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.45  E-value=0.24  Score=38.67  Aligned_cols=31  Identities=32%  Similarity=0.416  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus        11 k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~   41 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFA-RAGANVAVAG   41 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEe
Confidence            368999999999999999987 5678876543

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=94.43  E-value=0.2  Score=42.38  Aligned_cols=91  Identities=12%  Similarity=0.122  Sum_probs=47.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-Ceee-eCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPV-MSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v-~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      ++||+|+|. |.-...+++.+.+..+++.+.+.+.. .+.  ..+.    .. .+++ +.|.+++++ ++++.++|+|+-
T Consensus        24 ~~~IlIlG~-g~r~~al~~~~a~~~g~~~v~~~~~~-~~~--~~~~----~~~~~~~~~~d~~~l~~-~~~~~~~d~V~~   94 (452)
T 2qk4_A           24 AARVLIIGS-GGREHTLAWKLAQSHHVKQVLVAPGN-AGT--ACSE----KISNTAISISDHTALAQ-FCKEKKIEFVVV   94 (452)
T ss_dssp             SEEEEEEEC-SHHHHHHHHHHTTCTTEEEEEEEECC-GGG--SBSS----SEEECCCCSSCHHHHHH-HHHHHTCCEEEE
T ss_pred             CcEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCC-hhh--hhhc----cccccccCCCCHHHHHH-HHHHcCCCEEEE
Confidence            489999995 73223355666677788866554421 111  1111    10 1111 456666543 222357898873


Q ss_pred             ccCchhH--HHHHHHHHHcCCcEEEeC
Q 031341          113 FTDASTV--YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       113 fT~p~~~--~~~~~~al~~g~~vVigt  137 (161)
                       . ++..  ...+..+.+.|++++ |.
T Consensus        95 -~-~E~~~~~~~~~~l~~~gi~~~-g~  118 (452)
T 2qk4_A           95 -G-PEAPLAAGIVGNLRSAGVQCF-GP  118 (452)
T ss_dssp             -C-SSHHHHTTHHHHHHHTTCCEE-SC
T ss_pred             -C-CcHHHHHHHHHHHHhcCCcEe-Cc
Confidence             2 3322  244455567899864 44

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=94.40  E-value=0.39  Score=36.56  Aligned_cols=31  Identities=29%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         3 k~vlItGasggiG~~~a~~l~~-~G~~V~~~~   33 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLA-RGDRVAALD   33 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEe
Confidence            3689999999999999999984 578876544

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.36  E-value=0.061  Score=44.08  Aligned_cols=73  Identities=16%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~---g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      .++||+|+|+ |.||..++..+....-..=+.++|.+..   |  .++.+.... ...++.++.+..+.+.      ++|
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~-~~~~~~i~~~~~~al~------~aD   76 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVF-APKPVDIWHGDYDDCR------DAD   76 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTS-SSSCCEEEECCGGGTT------TCS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhh-cCCCeEEEcCcHHHhC------CCC
Confidence            4579999996 9999999988875543333557785421   1  111111111 0113444444444553      899


Q ss_pred             EEEEcc
Q 031341          109 VVIDFT  114 (161)
Q Consensus       109 VVIDfT  114 (161)
                      +||..+
T Consensus        77 vViia~   82 (316)
T 1ldn_A           77 LVVICA   82 (316)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999664

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.35  E-value=0.12  Score=39.92  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=28.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .-+|.|.|++|.+|+.+++.+. ..+.+++.+.++
T Consensus        13 ~k~vlITGas~giG~~ia~~l~-~~G~~v~~~~~~   46 (256)
T 3ezl_A           13 QRIAYVTGGMGGIGTSICQRLH-KDGFRVVAGCGP   46 (256)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHH-HTTEEEEEEECT
T ss_pred             CCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCC
Confidence            4689999999999999999998 558888766644

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.35  E-value=0.25  Score=38.34  Aligned_cols=31  Identities=10%  Similarity=0.199  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~   38 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELAR-NGARLLLFS   38 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEe
Confidence            3689999999999999999984 578876543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=94.34  E-value=0.15  Score=39.80  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=25.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -++.|.|++|.+|+.+++.+.+ .|.+++.+.
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~   38 (260)
T 1nff_A            8 KVALVSGGARGMGASHVRAMVA-EGAKVVFGD   38 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            4699999999999999999974 588877543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=94.33  E-value=0.24  Score=39.13  Aligned_cols=31  Identities=29%  Similarity=0.346  Sum_probs=26.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -+|.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus        19 k~vlVTGasggIG~~la~~l~~-~G~~V~~~~   49 (303)
T 1yxm_A           19 QVAIVTGGATGIGKAIVKELLE-LGSNVVIAS   49 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999984 678876554

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=94.33  E-value=0.23  Score=38.82  Aligned_cols=33  Identities=18%  Similarity=0.405  Sum_probs=27.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ++.|.|++|.+|+.+++.+. ..+.+++...++.
T Consensus         6 ~vlVTGas~gIG~aia~~l~-~~G~~vv~~~~r~   38 (258)
T 3oid_A            6 CALVTGSSRGVGKAAAIRLA-ENGYNIVINYARS   38 (258)
T ss_dssp             EEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSC
T ss_pred             EEEEecCCchHHHHHHHHHH-HCCCEEEEEcCCC
Confidence            68999999999999999987 6689988665643

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=94.32  E-value=0.048  Score=42.05  Aligned_cols=32  Identities=28%  Similarity=0.273  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r   39 (241)
T 1dhr_A            8 RRVLVYGGRGALGSRCVQAFR-ARNWWVASIDV   39 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHH-hCCCEEEEEeC
Confidence            469999999999999999997 55888775543

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.31  E-value=0.038  Score=42.03  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         3 k~vlVtGasggiG~~la~~l~~-~G~~V~~~~r   34 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKA-RGYRVVVLDL   34 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-HTCEEEEEES
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEcc
Confidence            4699999999999999999985 4788776544

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.30  E-value=0.48  Score=36.99  Aligned_cols=93  Identities=17%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVID  112 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+..+......         .....-..+++++..++. .....   +..|
T Consensus        11 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D   79 (287)
T 3pxx_A           11 KVVLVTGGARGQGRSHAVKLA-EEGADIILFDICHDIETN---------EYPLATSRDLEEAGLEVE-KTGRKAYTAEVD   79 (287)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSCCTTS---------CSCCCCHHHHHHHHHHHH-HTTSCEEEEECC
T ss_pred             CEEEEeCCCChHHHHHHHHHH-HCCCeEEEEccccccccc---------ccchhhhHHHHHHHHHHH-hcCCceEEEEcc
Confidence            369999999999999999997 568887654332111000         000000011222111000 01222   3457


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .+.++...+.+..+.+.  ++.+++-..|
T Consensus        80 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (287)
T 3pxx_A           80 VRDRAAVSRELANAVAEFGKLDVVVANAG  108 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88888777766655554  7888887655

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.29  E-value=0.076  Score=40.68  Aligned_cols=32  Identities=25%  Similarity=0.211  Sum_probs=26.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus         4 k~vlITGas~gIG~~~a~~l~-~~G~~V~~~~r   35 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFK-KNGYTVLNIDL   35 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-HTTEEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEec
Confidence            469999999999999999998 45888776544

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.28  E-value=0.2  Score=39.53  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -++.|.|++|.+|+.+++.+. ..|.+++...++
T Consensus        32 k~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~   64 (271)
T 3v2g_A           32 KTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVN   64 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCC
Confidence            369999999999999999997 568887765443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.26  E-value=0.2  Score=38.86  Aligned_cols=84  Identities=19%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             eeEEEEcCCC-HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEc
Q 031341           36 IKVIINGAVK-EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G-~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (161)
                      -++.|.|++| .+|+.+++.+. ..+.+++.+ ++..  .+..+.              .+++-.. . ..++. +..|.
T Consensus        23 k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~-~r~~--~~~~~~--------------~~~l~~~-~-~~~~~~~~~Dl   82 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRAL-LEGADVVIS-DYHE--RRLGET--------------RDQLADL-G-LGRVEAVVCDV   82 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHH-HTTCEEEEE-ESCH--HHHHHH--------------HHHHHTT-C-SSCEEEEECCT
T ss_pred             CEEEEECCCCCchHHHHHHHHH-HCCCEEEEe-cCCH--HHHHHH--------------HHHHHhc-C-CCceEEEEeCC
Confidence            4699999888 69999999998 458886654 4321  111110              0111100 0 01222 34567


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      +.++...+.+..+.+.  ++.+++-..|
T Consensus        83 ~~~~~v~~~~~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           83 TSTEAVDALITQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            7777776666555544  6788876654

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.26  E-value=0.17  Score=43.93  Aligned_cols=86  Identities=9%  Similarity=0.087  Sum_probs=50.7

Q ss_pred             CCCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccE
Q 031341           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV  109 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DV  109 (161)
                      ..+-||.|+|. |+.|.. +++.+. ..|.++. +.|....  +..+.+   .+.|++++.  +.+. +      .++|+
T Consensus        20 ~~~~~v~viGi-G~sG~s~~A~~l~-~~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~g~~~~~-~------~~~d~   84 (494)
T 4hv4_A           20 RRVRHIHFVGI-GGAGMGGIAEVLA-NEGYQIS-GSDLAPN--SVTQHL---TALGAQIYFHHRPEN-V------LDASV   84 (494)
T ss_dssp             --CCEEEEETT-TSTTHHHHHHHHH-HTTCEEE-EECSSCC--HHHHHH---HHTTCEEESSCCGGG-G------TTCSE
T ss_pred             ccCCEEEEEEE-cHhhHHHHHHHHH-hCCCeEE-EEECCCC--HHHHHH---HHCCCEEECCCCHHH-c------CCCCE
Confidence            34578999995 999996 677665 7788866 5674321  111112   134666653  2222 3      36898


Q ss_pred             EEEcc--CchhHHHHHHHHHHcCCcEEE
Q 031341          110 VIDFT--DASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       110 VIDfT--~p~~~~~~~~~al~~g~~vVi  135 (161)
                      || .|  .|.. .+.+..|.++|++++.
T Consensus        85 vV-~Spgi~~~-~p~~~~a~~~gi~v~~  110 (494)
T 4hv4_A           85 VV-VSTAISAD-NPEIVAAREARIPVIR  110 (494)
T ss_dssp             EE-ECTTSCTT-CHHHHHHHHTTCCEEE
T ss_pred             EE-ECCCCCCC-CHHHHHHHHCCCCEEc
Confidence            88 44  2332 3456667788888653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=94.24  E-value=0.27  Score=37.25  Aligned_cols=31  Identities=32%  Similarity=0.405  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus         6 k~vlVtGasggiG~~~a~~l~-~~G~~V~~~~   36 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLH-AKGYRVGLMA   36 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEE
Confidence            369999999999999999997 4688877554

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=94.22  E-value=0.23  Score=38.37  Aligned_cols=83  Identities=12%  Similarity=0.127  Sum_probs=49.4

Q ss_pred             CeeEEEEcCC--CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEE
Q 031341           35 NIKVIINGAV--KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI  111 (161)
Q Consensus        35 ~ikV~ViGa~--G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVI  111 (161)
                      .-+|.|.|++  |.+|+.+++.+. ..+.+++.+..+..   ...               .++++..+.   .... +..
T Consensus        14 ~k~vlITGa~~~~giG~~ia~~l~-~~G~~V~~~~r~~~---~~~---------------~~~~~~~~~---~~~~~~~~   71 (271)
T 3ek2_A           14 GKRILLTGLLSNRSIAYGIAKACK-REGAELAFTYVGDR---FKD---------------RITEFAAEF---GSELVFPC   71 (271)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG---GHH---------------HHHHHHHHT---TCCCEEEC
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHH-HcCCCEEEEecchh---hHH---------------HHHHHHHHc---CCcEEEEC
Confidence            4689999998  999999999998 55788775543211   100               111111110   1122 345


Q ss_pred             EccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      |.+.++.....+..+.+.  ++.+++-..|
T Consensus        72 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  101 (271)
T 3ek2_A           72 DVADDAQIDALFASLKTHWDSLDGLVHSIG  101 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSCEEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            777777776666655554  5677766544

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.21  E-value=0.3  Score=38.59  Aligned_cols=83  Identities=24%  Similarity=0.301  Sum_probs=48.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (161)
                      -++.|.|++|.+|+.+++.+. ..+.+++.+ ++...  ...++               .+.+...  ..+.. +..|.+
T Consensus        33 k~~lVTGas~GIG~aia~~la-~~G~~V~~~-~r~~~--~~~~~---------------~~~~~~~--~~~~~~~~~Dl~   91 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYA-EAGAQVAVA-ARHSD--ALQVV---------------ADEIAGV--GGKALPIRCDVT   91 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEE-ESSGG--GGHHH---------------HHHHHHT--TCCCEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEE-eCCHH--HHHHH---------------HHHHHhc--CCeEEEEEcCCC
Confidence            479999999999999999998 558887654 43221  11111               1111100  01122 345677


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .++...+.+..+.+.  ++.+++-..|
T Consensus        92 d~~~v~~~~~~~~~~~g~iD~lvnnAg  118 (276)
T 3r1i_A           92 QPDQVRGMLDQMTGELGGIDIAVCNAG  118 (276)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777766666555444  6777776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	9e-06

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 9e-06
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS 92
            +NI+V I GA   +GR  + A     G+++  A++            ++    +  V  
Sbjct: 2   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152
             ++     +      V IDFT      +++      G   V+           A+    
Sbjct: 62  QSSL----DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAA 117

Query: 153 DKASMV 158
              ++V
Sbjct: 118 ADIAIV 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	99.96
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	99.93
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	99.91
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	99.75
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.75
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	99.72
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	99.7
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.66
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.63
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	99.62
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	99.6
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	99.47
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.31
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.14
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.14
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.12
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.11
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	99.04
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.04
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	99.02
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.98
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	98.92
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	98.91
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	98.86
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.76
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.73
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.7
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	98.69
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	98.62
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.6
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.58
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.54
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.53
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	98.51
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.45
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.41
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	98.36
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.34
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.29
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.19
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.18
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.17
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	98.16
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.14
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.12
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.08
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	98.08
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.04
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.02
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.99
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.96
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.9
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.89
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.87
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.82
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.79
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.72
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.62
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.6
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.58
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	97.52
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.42
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	97.34
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.29
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.28
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.26
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	97.22
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.21
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	97.2
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.18
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	97.11
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.11
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.09
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.07
d1vjpa1	275	Hypothetical protein TM1419 {Thermotoga maritima [	97.04
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.02
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.02
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.96
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.95
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.94
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.94
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.91
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.85
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.71
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.68
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.54
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.51
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.5
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.5
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.48
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.46
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.46
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.44
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.42
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.39
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.39
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.34
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.32
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.23
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	96.17
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.17
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.15
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.14
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.12
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.11
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.1
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	96.08
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.07
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.05
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.04
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	96.01
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.01
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.99
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.96
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.94
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	95.92
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.9
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.85
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	95.82
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.81
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.8
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.72
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.71
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.68
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.66
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.63
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.59
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.58
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.54
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.53
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.44
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.43
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.42
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.41
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.39
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.36
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	95.36
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.27
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.25
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.17
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.16
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.16
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.09
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.06
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.95
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.91
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	94.87
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.85
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.82
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.81
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.75
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.68
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.64
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.63
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.61
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	94.59
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.59
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.57
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.55
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.49
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	94.49
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	94.46
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.46
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.45
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.43
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.42
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.42
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	94.39
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.38
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.28
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	94.24
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.21
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.19
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.18
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.17
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.16
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.15
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.12
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.06
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.02
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	94.01
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.99
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	93.95
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.9
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.88
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.87
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.86
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.85
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.83
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	93.72
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.67
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.66
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.66
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.47
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.43
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.38
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.31
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.31
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.26
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.13
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.04
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	92.83
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.74
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.67
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.59
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	92.51
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.49
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.46
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.42
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.35
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.29
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.25
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	92.23
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.07
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.06
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.93
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.86
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.84
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.82
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.68
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.63
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	91.62
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.41
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	91.39
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.11
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	91.04
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.98
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	90.77
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.75
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.66
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.62
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.57
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.53
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.43
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	90.0
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.94
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	89.38
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	89.36
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	88.98
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	88.3
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	88.11
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.03
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.9
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	87.88
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.81
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	86.98
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	86.27
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.59
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	85.31
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.03
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	84.74
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	84.68
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	84.5
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	84.42
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	84.32
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	83.07
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	81.53
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	81.26
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	81.23
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	81.23
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	80.66
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	80.56
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	80.44
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	80.44

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.2e-30  Score=195.25  Aligned_cols=121  Identities=22%  Similarity=0.308  Sum_probs=112.5

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      +++|||+|+||+|||||++++.+.+.++++|++++++.   ..|.+.+++.+.. +.++++++++++++.      .+||
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~-~~~~~~~~~~~~~~~------~~DV   74 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDV   74 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccc-cCCceeeccHHHHhc------ccce
Confidence            46799999999999999999999999999999999953   4688889988875 778999999998874      7999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      +||||+|++..+++++|.++|+|+|+|||||+++|.+.|+++|++.||+++
T Consensus        75 iIDFs~p~~~~~~~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~ipi~~a  125 (162)
T d1diha1          75 FIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFA  125 (162)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTTSCEEEC
T ss_pred             EEEeccHHHHHHHHHHHHhccceeEEecCCCcHHHHHHHHHHcCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999987

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=2.3e-25  Score=164.99  Aligned_cols=99  Identities=23%  Similarity=0.335  Sum_probs=87.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      ||+|+|++||||+.+++.+.+.++++|++.+|+..                     ++.....     .++|||||||+|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------------~~~~~~~-----~~~DvvIDFS~p   54 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------------PLSLLTD-----GNTEVVIDFTHP   54 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------------CTHHHHT-----TTCSEEEECCCT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------------chhhhcc-----ccCCEEEEcccH
Confidence            89999999999999999999999999999998521                     1222222     479999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHH---hhhcCeeecC
Q 031341          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF---CDKASMVSTG  161 (161)
Q Consensus       117 ~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~---A~~~~Vv~tg  161 (161)
                      +...++++.|+++|+|+|+|||||++++.+.|+++   +++.||+++.
T Consensus        55 ~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~ap  102 (135)
T d1yl7a1          55 DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP  102 (135)
T ss_dssp             TTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcC
Confidence            99999999999999999999999999999999985   7889999974

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=6.7e-25  Score=160.95  Aligned_cols=95  Identities=20%  Similarity=0.285  Sum_probs=84.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+|+|++||||+.+.+.+ ..+++++++.+|....                       +.+      .++|||||||+
T Consensus         1 mki~i~G~~GrMG~~i~~~~-~~~~~~l~~~id~~~~-----------------------~~~------~~~DVvIDFS~   50 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNGV-----------------------EEL------DSPDVVIDFSS   50 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTEE-----------------------EEC------SCCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHH-hcCCCeEEEEECCCcH-----------------------HHh------ccCCEEEEecC
Confidence            79999999999999998876 4789999999885310                       012      37899999999


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (161)
                      |+...++++.|+++|+|+|+|||||++++.+.|+++|++.||+++
T Consensus        51 p~~~~~~l~~~~~~~~p~ViGTTG~~~~~~~~i~~~ak~~pv~~a   95 (128)
T d1vm6a3          51 PEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQA   95 (128)
T ss_dssp             GGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTTSEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHhhCCEEee
Confidence            999999999999999999999999999999999999999999986

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=7.1e-18  Score=125.80  Aligned_cols=113  Identities=15%  Similarity=0.251  Sum_probs=96.1

Q ss_pred             CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|||||+| +|+||+. ++..+...+++++++++|++..  ...++.   ++++++.+++++++++      ++|+|+.+
T Consensus         1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~--~~~~~~---~~~~~~~~~~~~~l~~------~~D~V~I~   68 (164)
T d1tlta1           1 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRA--KALPIC---ESWRIPYADSLSSLAA------SCDAVFVH   68 (164)
T ss_dssp             CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCT--THHHHH---HHHTCCBCSSHHHHHT------TCSEEEEC
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhH--hhhhhh---hcccccccccchhhhh------hccccccc
Confidence            58999999 5999986 7888888999999999997542  222332   2457888999999874      79999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |+|..+.+++..++++|+||++++| +.+.++.++|.++|+++++.+
T Consensus        69 tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~  115 (164)
T d1tlta1          69 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  115 (164)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ccchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence            9999999999999999999999998 678999999999999988653

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=6.4e-18  Score=128.08  Aligned_cols=118  Identities=12%  Similarity=0.163  Sum_probs=98.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|||||+| +|+||+.+++.+...++++|+|++|++.. .+...+..+.  +.+..+|+|++++++.    .++|+|+.+
T Consensus         1 kiki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~----~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY--PESTKIHGSYESLLED----PEIDALYVP   73 (184)
T ss_dssp             CEEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC--CTTCEEESSHHHHHHC----TTCCEEEEC
T ss_pred             CeEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccc--ccceeecCcHHHhhhc----cccceeeec
Confidence            58999999 59999999999999999999999996431 1222222222  2345689999999974    789999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      |+|..+.+++..++++|+|+++++| +.+.++.++|.++++++++.+
T Consensus        74 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          74 LPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             ccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            9999999999999999999999998 578999999999999987643

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=99.72  E-value=1.3e-17  Score=130.78  Aligned_cols=136  Identities=9%  Similarity=0.049  Sum_probs=106.9

Q ss_pred             ccccceeEEeeCC-CCCCCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCCCeeeeCCH
Q 031341           18 NVKAKRFISCSTN-PPQSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDL   94 (161)
Q Consensus        18 ~~~~~~~~~~~~~-~~~~~ikV~ViGa~G~mGr-~i~~~l~~~~~~eLvavvd~~~-~g~~~~~~~g~~~~~~i~v~~dl   94 (161)
                      .+..+++.+-..+ +..+++||+|+|+ |.||+ .++..+...++++|++++|+.. ..+...+..+++ ...+..|+|+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~~~d~   92 (221)
T d1h6da1          15 TPAGRPMPYAIRPMPEDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNF   92 (221)
T ss_dssp             SSCCCCCCCCSSCCCCCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSG
T ss_pred             CCCCCcCccccCCCCCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccccCch
Confidence            3455666666666 3445799999995 99997 4678888899999999999643 112233333432 3345678999


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +++++.    .++|+|+.+|++..+.+.+..++++|+||++++| +.+.++..+|.+++++++++.
T Consensus        93 ~ell~~----~~iD~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~  154 (221)
T d1h6da1          93 DKIAKD----PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  154 (221)
T ss_dssp             GGGGGC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             hhhccc----ccceeeeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence            999874    7899999899999999999999999999999998 679999999999999987654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=6.8e-17  Score=122.43  Aligned_cols=114  Identities=14%  Similarity=0.118  Sum_probs=93.4

Q ss_pred             CeeEEEEcCCCHHHHH-HHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRA-AVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~-i~~~l~~~~~-~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ++||+|+| +|++|+. ++..+.+.++ ++|++++|++.  .....+.   +.++. .+|+|++++++.    .++|+|+
T Consensus         3 kirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ell~~----~~id~v~   72 (181)
T d1zh8a1           3 KIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLES----GLVDAVD   72 (181)
T ss_dssp             CEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHHS----SCCSEEE
T ss_pred             CcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccH--hhhhhhh---ccccccceeeeeeccccc----cccceee
Confidence            59999999 5999987 6888887655 79999999753  1222222   12333 578999999984    6899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCee
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv  158 (161)
                      .+|+|+.+.+++..++++|+||++++| +.+.++.++|.++++++++.
T Consensus        73 I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          73 LTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             ccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            899999999999999999999999998 68999999999999998754

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.66  E-value=2.5e-16  Score=118.56  Aligned_cols=107  Identities=15%  Similarity=0.074  Sum_probs=87.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +|||+|+| +|+||+.+++.+.+.+++||++++++....      .   ...++..+.++++++.      ++|+|+.+|
T Consensus         3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~------~---~~~~~~~~~~~~~~~~------~~D~Vvi~t   66 (170)
T d1f06a1           3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATL------D---TKTPVFDVADVDKHAD------DVDVLFLCM   66 (170)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCC------S---SSSCEEEGGGGGGTTT------TCSEEEECS
T ss_pred             cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccc------c---cccccccchhhhhhcc------ccceEEEeC
Confidence            59999999 599999999999999999999999965311      0   1345566677777664      799999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCe
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASM  157 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~V  157 (161)
                      ++..+.+++..++++|+|+|+..+  ..+.++.+.|.++|++.+.
T Consensus        67 p~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~  111 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN  111 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             CCcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCc
Confidence            999999999999999999886544  3456778899999999764

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.63  E-value=1.1e-15  Score=113.94  Aligned_cols=111  Identities=13%  Similarity=0.174  Sum_probs=90.5

Q ss_pred             eeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |||+|+| +|+||+. ++..+...++++++ ++|++.  .....+.   +.+++ .+|+|++++++     .++|+|+.+
T Consensus         2 irvgiiG-~G~~~~~~~~~~l~~~~~~~~~-~~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~-----~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIG-LGDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVMIH   69 (167)
T ss_dssp             EEEEEEC-CCHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEEEC
T ss_pred             eEEEEEc-CCHHHHHHHHHHHHhCCCcEEE-EEECCH--HHHHHHH---HhcccccccccHHHhcc-----cccceeccc
Confidence            8999999 5999965 78888889999987 777532  1222222   13344 46899999886     489999989


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv  158 (161)
                      |+|+.+.+++..++++|+||++++| +.+.++.++|.+++++.++.
T Consensus        70 tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          70 AATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            9999999999999999999999999 78899999999999998764

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=8.6e-16  Score=115.24  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=92.9

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      +.+.++||+|+| +|+||+.+++.+.+.++.+++++++.... +....      ..+.+ +.|+++++..    .++|+|
T Consensus         3 ~~~~k~kv~iIG-~G~~g~~h~~~l~~~~~~~~~~~~~~~~~-~~~~~------~~~~~-~~~~~e~l~~----~~iD~V   69 (172)
T d1lc0a1           3 TNSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSR-RELGS------LDEVR-QISLEDALRS----QEIDVA   69 (172)
T ss_dssp             CCCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECS-SCCCE------ETTEE-BCCHHHHHHC----SSEEEE
T ss_pred             CCCCCcEEEEEc-CCHHHHHHHHHHHhCCCCcEEEEEeccch-HHHHH------hhccC-cCCHHHHHhC----CCcchh
Confidence            346789999999 59999999999998887777777773211 11111      12233 4589999874    789999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +.+|+|+.+.+++..++++|+||++++| +.+.++.++|.++|+++++.+
T Consensus        70 ~I~tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~  119 (172)
T d1lc0a1          70 YICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVL  119 (172)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             hhcccccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence            9899999999999999999999999998 679999999999999987653

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.60  E-value=3.9e-15  Score=117.16  Aligned_cols=121  Identities=12%  Similarity=0.108  Sum_probs=96.1

Q ss_pred             eCCCCCCCeeEEEEcCCC----HHHHHHHHHHHh-cCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcc
Q 031341           28 STNPPQSNIKVIINGAVK----EIGRAAVIAVTK-ARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        28 ~~~~~~~~ikV~ViGa~G----~mGr~i~~~l~~-~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~  101 (161)
                      ++-|.+++|||||+|+ |    .+++.++..+.. .++++|+|++|++.. .+...+..+.   .....|+|++++++. 
T Consensus         9 ~~~~~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-   83 (237)
T d2nvwa1           9 STVPSSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQL---KHATGFDSLESFAQY-   83 (237)
T ss_dssp             GSSGGGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTC---TTCEEESCHHHHHHC-
T ss_pred             ccCCCCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhccc---ccceeecchhhcccc-
Confidence            5677788999999996 5    478888888875 589999999996431 1122222221   245678999999974 


Q ss_pred             cccCCccEEEEccCchhHHHHHHHHHHcC------CcEEEeCC-CCCHHHHHHHHHHhhhcC
Q 031341          102 SQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKAS  156 (161)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~~~~~~~al~~g------~~vVigtt-g~~~e~~~~L~~~A~~~~  156 (161)
                         .++|+|+.+|++..+.+++..++++|      +||++++| +.+.++.++|.++|++.+
T Consensus        84 ---~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~  142 (237)
T d2nvwa1          84 ---KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA  142 (237)
T ss_dssp             ---TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred             ---cccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcC
Confidence               78999999999999999999999987      59999999 789999999999997653

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.31  E-value=4.2e-12  Score=96.68  Aligned_cols=94  Identities=17%  Similarity=0.215  Sum_probs=72.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-------------hhhhhcCCCCCCeeeeCCHHHHHhcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-------------IGMVCDMEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~-------------~~~~~g~~~~~~i~v~~dl~~~l~~~  101 (161)
                      |+||+|+| +||+||.++|.+.+++++|+|++.|.......             ......+ ...++++..++++++.  
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~g~~~~~~~--   76 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK--   76 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH--
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceec-cccceecCCchhhhhh--
Confidence            79999999 69999999999999999999999995321000             0000011 1345666777888775  


Q ss_pred             cccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341          102 SQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                          ++|+|||+|......+.++..+++|+++|+-
T Consensus        77 ----~vDiViecTG~f~~~e~a~~hl~~G~KvIi~  107 (178)
T d1b7go1          77 ----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ  107 (178)
T ss_dssp             ----HCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             ----cCCEEEECCCCcCCHHHHHHHHHcCCEEEEE
Confidence                6999999998888889999999999998873

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=6.8e-11  Score=89.29  Aligned_cols=93  Identities=22%  Similarity=0.253  Sum_probs=68.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC------------CCCCeeeeCCHHHHHhc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME------------QPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~--g~~------------~~~~i~v~~dl~~~l~~  100 (161)
                      ++||+|.| +|||||.+++++.+++++|+|++-|.... .....+.  +..            ...++++..++.+++. 
T Consensus         2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (172)
T d2czca2           2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPD-FEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE-   78 (172)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT-
T ss_pred             cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCCh-HHHHHhhhcCceeecccccceeeecccCccccchhhhhhc-
Confidence            58999999 69999999999999999999999995321 1100000  000            0122344445666653 


Q ss_pred             ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                           ++|+|||+|..-...+.+...+++|+..|+
T Consensus        79 -----~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi  108 (172)
T d2czca2          79 -----KVDIIVDATPGGIGAKNKPLYEKAGVKAIF  108 (172)
T ss_dssp             -----TCSEEEECCSTTHHHHHHHHHHHHTCEEEE
T ss_pred             -----cCCEEEECCCCCCCHHHHHHHHHcCCCEEE
Confidence                 799999999999999999999999998887

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=1.2e-09  Score=78.01  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .-||.|-|.+|+.|+.+.+...+- +.++||.+.+...|..         -.++|+|++++|+.++    .++|+-+.|-
T Consensus         7 ~trVivQGiTG~~G~~ht~~m~~y-GT~iVaGVtPgkgG~~---------~~giPVf~tV~eAv~~----~~~d~SvIfV   72 (121)
T d1oi7a1           7 ETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGME---------VLGVPVYDTVKEAVAH----HEVDASIIFV   72 (121)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----SCCSEEEECC
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHh-CCceEeeeecCCCCcE---------EECCchHhhHHHHHHh----cCCeEEEEee
Confidence            368999999999999999998864 9999999997654432         2489999999999985    7899888899


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +|..+.+-+..|+++|+++|+--| |...-+.-++.+.+++.++..
T Consensus        73 Pp~~a~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~~l  118 (121)
T d1oi7a1          73 PAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRL  118 (121)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEE
T ss_pred             CHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCEE
Confidence            999999999999999999987766 777777777778877766543

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.4e-09  Score=77.48  Aligned_cols=113  Identities=18%  Similarity=0.266  Sum_probs=95.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .-||.|-|.||+-|+.+.+...+ -+.++||.+.+...|..         -.++|+|++++|+.++    .++|+-+.|-
T Consensus         6 ~trVlvQGiTG~~G~~ht~~m~~-yGT~vVaGVtPgkgG~~---------~~giPVf~sV~eAv~~----~~~~~SvIfV   71 (119)
T d2nu7a1           6 NTKVICQGFTGSQGTFHSEQAIA-YGTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIYV   71 (119)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTEE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHH-hCCceEEEEccCCCCcc---------cCCCchhhHHHHHHHH----hCCCeEEEec
Confidence            46999999999999999999874 59999999997655432         3589999999999885    7899877799


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeeecC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +|..+.+-+..|+++|+++++--| |...-+.-++.+.+++..+..-|
T Consensus        72 Pp~~a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~liG  119 (119)
T d2nu7a1          72 PAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG  119 (119)
T ss_dssp             CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             cHHHHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCCEEeC
Confidence            999999999999999999987655 77777778889999988776544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=99.11  E-value=2.6e-10  Score=85.98  Aligned_cols=94  Identities=21%  Similarity=0.272  Sum_probs=68.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--c------CC------CCCCeeeeCCHHHHHhc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--D------ME------QPLEIPVMSDLTMVLGS  100 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~--g------~~------~~~~i~v~~dl~~~l~~  100 (161)
                      |+||+|.| +||+||.+++.+..+++++++++-|..... ....+.  +      ..      ...++++..+..+++. 
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-   77 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDF-EARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD-   77 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSH-HHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH-
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHH-HHHHHHhcCCceEecccccceeecccCcccCCChhHhhc-
Confidence            78999999 699999999999999999999999953210 000000  0      00      0123344445666654 


Q ss_pred             ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                           ++|+|||+|..-...+.+...+++|+.+|+-
T Consensus        78 -----~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~  108 (171)
T d1cf2o1          78 -----EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ  108 (171)
T ss_dssp             -----TCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             -----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Confidence                 7999999998888889999999999998873

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=99.04  E-value=6.5e-10  Score=82.60  Aligned_cols=99  Identities=17%  Similarity=0.254  Sum_probs=69.3

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DVVI  111 (161)
                      +++||||+| +|++|+. +.+.+..+|.+||+++++++..+... .++   .+++++++ .+++++++.. ...++|+|+
T Consensus         3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~-~~a---~~~~i~~~~~~~d~l~~~~-~~~~iDiVf   76 (157)
T d1nvmb1           3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL-ARA---QRMGVTTTYAGVEGLIKLP-EFADIDFVF   76 (157)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH-HHH---HHTTCCEESSHHHHHHHSG-GGGGEEEEE
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccch-hhh---hhcCCcccccceeeeeecc-cccccCEEE
Confidence            569999999 6999986 56777789999999999975433221 122   24567665 4466655310 013689999


Q ss_pred             EccCchhHHH--HHHHHHHcCCcEEEeCC
Q 031341          112 DFTDASTVYD--NVKQATAFGMRSVVYVP  138 (161)
Q Consensus       112 DfT~p~~~~~--~~~~al~~g~~vVigtt  138 (161)
                      ++|++..+.+  .+..++++|++||--++
T Consensus        77 ~ATpag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          77 DATSASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             EcCCchhHHHhHHHHHHHHcCCEEEEccc
Confidence            8887777765  45678999999987665

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=4.2e-10  Score=85.25  Aligned_cols=91  Identities=15%  Similarity=0.070  Sum_probs=65.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ||||+|+||||..|+++++.|.+||.++|+.+..++..|+.+.+........-.....+.++...      +.|+++ ++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~------~~dvvf-~a   73 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK------NCDVLF-TA   73 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH------HCSEEE-EC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc------ccceEE-Ec
Confidence            89999999999999999999999999999999998888888876542210111122356666654      689998 66


Q ss_pred             CchhHH-HHHHHHHHcCCcEE
Q 031341          115 DASTVY-DNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~~-~~~~~al~~g~~vV  134 (161)
                      .|+... +.+..  ..++.||
T Consensus        74 ~p~~~s~~~~~~--~~~~~VI   92 (176)
T d1vkna1          74 LPAGASYDLVRE--LKGVKII   92 (176)
T ss_dssp             CSTTHHHHHHTT--CCSCEEE
T ss_pred             cccHHHHHHHHh--hccceEE
Confidence            676664 44432  3566655

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.02  E-value=3.3e-10  Score=85.72  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=66.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .++|||+|+||||..|+++++.|.+||.+||+.+.++...|+..++........+.+.....++...     .+.|+++ 
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dvvf-   76 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADF-----SNVDAVF-   76 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCG-----GGCSEEE-
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhh-----cccceee-
Confidence            3579999999999999999999999999999999887778888776543221223333333333322     3799999 


Q ss_pred             ccCchhHH-HHHHHHHHcCCcEEE
Q 031341          113 FTDASTVY-DNVKQATAFGMRSVV  135 (161)
Q Consensus       113 fT~p~~~~-~~~~~al~~g~~vVi  135 (161)
                      ++.|+... +.+....+.+ .+|.
T Consensus        77 ~alp~~~s~~~~~~l~~~~-~~v~   99 (183)
T d2cvoa1          77 CCLPHGTTQEIIKGLPQEL-KIVD   99 (183)
T ss_dssp             ECCSSSHHHHHHHTSCSSC-EEEE
T ss_pred             eccccchHHHHHHHHHhcC-cccc
Confidence            66676664 6665544444 4444

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.98  E-value=2.5e-09  Score=80.21  Aligned_cols=94  Identities=22%  Similarity=0.163  Sum_probs=66.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCC---CCCeeeeCCHHHHHhcccccCCcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQ---PLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~---~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      ||||+|+||||..|+++++.|..||++++..+..+.   ..|+...+......   ........+.+...      .+.|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d   74 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS------ADVD   74 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC------TTCC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh------cccc
Confidence            899999999999999999999999999999988742   35666554321110   11122233444333      3789


Q ss_pred             EEEEccCchhH-HHHHHHHHHcCCcEEE
Q 031341          109 VVIDFTDASTV-YDNVKQATAFGMRSVV  135 (161)
Q Consensus       109 VVIDfT~p~~~-~~~~~~al~~g~~vVi  135 (161)
                      +++ ++.|+.. .+.+....+.|+.+|-
T Consensus        75 vvf-~alp~~~s~~~~~~~~~~~~~vID  101 (179)
T d2g17a1          75 VVF-LATAHEVSHDLAPQFLQAGCVVFD  101 (179)
T ss_dssp             EEE-ECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eee-ccccchhHHHHhhhhhhcCceeec
Confidence            988 6656555 6888999999998874

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.92  E-value=2.2e-08  Score=72.03  Aligned_cols=110  Identities=15%  Similarity=0.194  Sum_probs=89.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .-||.|-|.+|+-|+.+.+...+ -+.++||.+.+...|..         -.++|+|++++|+.++    .++|+-+.|-
T Consensus        15 ~TrVivQGiTG~~G~~ht~~m~~-YGT~iVaGVtPgKgG~~---------~~giPVf~tV~eA~~~----~~~daSvIfV   80 (130)
T d1euca1          15 NTKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYV   80 (130)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCeEEEEcCCCcHHHHHHHHHHH-hcCCeEEeeccCCCCcc---------ccCccchhhHHHHHHh----cCCcEEEEec
Confidence            36999999999999999999885 69999999997655432         3489999999999875    6899888799


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHH-HhhhcCee
Q 031341          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSA-FCDKASMV  158 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~-~A~~~~Vv  158 (161)
                      +|..+.+-+..|+++|+++|+--| |...-+.-++.+ +.++..+.
T Consensus        81 Pp~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~  126 (130)
T d1euca1          81 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  126 (130)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcE
Confidence            999999999999999999987766 666656556655 44554443

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=3.9e-09  Score=78.74  Aligned_cols=126  Identities=12%  Similarity=0.085  Sum_probs=79.0

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCC-----CCcchhhhhcCCC--CCCeeeeCCHHHHHhccc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHS-----VGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSIS  102 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~---~eLvavvd~~~-----~g~~~~~~~g~~~--~~~i~v~~dl~~~l~~~~  102 (161)
                      +++++|+|+| +|.+|+.+++++.+.+.   +++++++++..     .|.+.........  .....-..+.+.+...+.
T Consensus         2 ~k~i~I~l~G-~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T d1ebfa1           2 TKVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK   80 (168)
T ss_dssp             CSEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred             CCEEEEEEEe-CCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhc
Confidence            5679999999 69999999999986543   57788887421     1221111000000  001111223333222111


Q ss_pred             ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC---CCHHHHHHHHHHhhhcCeee
Q 031341          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH---IQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg---~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .....|+++|+|.-+...++...++++|+|||+..-+   .+.++.++|.++++++..++
T Consensus        81 ~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~~~~~~~  140 (168)
T d1ebfa1          81 TSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVY  140 (168)
T ss_dssp             TCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCCCEE
T ss_pred             cCCCceEEEEecCChHHHHHHHHHHHcCCeEEecCcccccCCHHHHHHHHHHHHHCCcEE
Confidence            2356789999998777788888999999999987653   23466778877788776654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.86  E-value=3.2e-09  Score=77.52  Aligned_cols=89  Identities=19%  Similarity=0.225  Sum_probs=65.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~--~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      +|||+|+||||..|+++++.|.  .+|.++|..+.+++..|+.+...     ..+..+ .++++...     .+.|+++ 
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~-----~~~~~~-~~~~~~~~-----~~~d~vf-   69 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA-----ESSLRV-GDVDSFDF-----SSVGLAF-   69 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET-----TEEEEC-EEGGGCCG-----GGCSEEE-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeec-----cccchh-ccchhhhh-----ccceEEE-
Confidence            5999999999999999999996  47999999888877777765432     112222 23333222     3789988 


Q ss_pred             ccCchhH-HHHHHHHHHcCCcEEE
Q 031341          113 FTDASTV-YDNVKQATAFGMRSVV  135 (161)
Q Consensus       113 fT~p~~~-~~~~~~al~~g~~vVi  135 (161)
                      |+.|... .+.+..+.++|+.||-
T Consensus        70 ~a~p~~~s~~~~~~~~~~g~~VID   93 (144)
T d2hjsa1          70 FAAAAEVSRAHAERARAAGCSVID   93 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             ecCCcchhhhhccccccCCceEEe
Confidence            6666554 6888999999998774

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.76  E-value=1.3e-08  Score=73.79  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+|+| +|.||+.+++.+.+ .++++.. .++...  +.....    ..+..+.++++++..      ..|+|+-+.+
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~-~g~~v~~-~~~~~~--~~~~~~----~~~~~~~~~~~e~~~------~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRS-RGVEVVT-SLEGRS--PSTIER----ARTVGVTETSEEDVY------SCPVVISAVT   65 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHH-TTCEEEE-CCTTCC--HHHHHH----HHHHTCEECCHHHHH------TSSEEEECSC
T ss_pred             CEEEEEc-HHHHHHHHHHHHHH-CCCeEEE-EcCchh--HHHHHh----hhcccccccHHHHHh------hcCeEEEEec
Confidence            7999999 69999999999985 5888764 443211  111111    123344567888875      7999997777


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      |+...+.+..+...--..++-.+..+++..++|.+.+++...+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~~~~  108 (152)
T d1i36a2          66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFV  108 (152)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSSEEE
T ss_pred             CchHHHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhccCCC
Confidence            7777788877777666777766667888888999888776543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.73  E-value=4.2e-08  Score=72.05  Aligned_cols=88  Identities=11%  Similarity=-0.045  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~---~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVI  111 (161)
                      |||+|+|+||..|+++++.|.+   +|..+++.+..+...|+... +.    .....+....+ +.+      .+.|+++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~-~~----~~~~~~~~~~~~~~~------~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPN-FG----KDAGMLHDAFDIESL------KQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCC-SS----SCCCBCEETTCHHHH------TTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccc-cC----Ccceeeecccchhhh------ccccEEE
Confidence            7999999999999999998764   67789987777654444321 11    11223322222 233      3799999


Q ss_pred             EccCchhH-HHHHHHHHHcCCc-EEE
Q 031341          112 DFTDASTV-YDNVKQATAFGMR-SVV  135 (161)
Q Consensus       112 DfT~p~~~-~~~~~~al~~g~~-vVi  135 (161)
                       |+.|+.. .+.+....+.|+. +|+
T Consensus        70 -~alp~~~s~~~~~~l~~~g~~~~VI   94 (147)
T d1mb4a1          70 -TCQGGSYTEKVYPALRQAGWKGYWI   94 (147)
T ss_dssp             -ECSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             -EecCchHHHHHhHHHHHcCCceEEE
Confidence             7777766 5788899999975 344

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.70  E-value=3.3e-08  Score=72.06  Aligned_cols=106  Identities=14%  Similarity=0.171  Sum_probs=72.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+++| +|+||+.+++.+.+ .+.++. +.+++.  ....++.   +++++.++.|.+++.+      ..|+|+-+..
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~-~~~~i~-v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQ-TPHELI-ISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT-SSCEEE-EECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEe-ccHHHHHHHHHHHh-CCCeEE-EEcChH--HhHHhhc---cccceeeechhhhhhh------ccceeeeecc
Confidence            7999999 59999999999975 466765 555432  1222222   2456777889999986      7999997777


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      |+...+.+ ..++.+..+|+-.+|.+.+++++.  +..+.+++
T Consensus        67 p~~~~~vl-~~l~~~~~iis~~agi~~~~l~~~--l~~~~~iv  106 (152)
T d2ahra2          67 PQLFETVL-KPLHFKQPIISMAAGISLQRLATF--VGQDLPLL  106 (152)
T ss_dssp             GGGHHHHH-TTSCCCSCEEECCTTCCHHHHHHH--HCTTSCEE
T ss_pred             hHhHHHHh-hhcccceeEecccccccHHHHHhh--hcccccch
Confidence            76655544 456777777777778887665443  23344554

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.69  E-value=4.6e-08  Score=69.60  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=66.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DV  109 (161)
                      ++.||+|+|| |++|+.+++.+...++++++|++|...  .|+.         -.|++|+  +++++...     ..+++
T Consensus         2 ~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~---------I~Gi~V~~~~~l~~~~~-----~~i~i   66 (126)
T d2dt5a2           2 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRP---------VRGGVIEHVDLLPQRVP-----GRIEI   66 (126)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE---------ETTEEEEEGGGHHHHST-----TTCCE
T ss_pred             CCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE---------ECCEEEecHHHHHHHHh-----hcccE
Confidence            4689999996 999999999888889999999999532  3322         2467776  55556554     46888


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341          110 VIDFTDASTVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~g~~vVig  136 (161)
                      ++-+.++....+.+..+.+.|++-+..
T Consensus        67 ai~~i~~~~~~~I~d~l~~~gIk~I~~   93 (126)
T d2dt5a2          67 ALLTVPREAAQKAADLLVAAGIKGILN   93 (126)
T ss_dssp             EEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHcCCCEEee
Confidence            775666666678889999999986644

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.62  E-value=4.7e-08  Score=71.62  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .||+|+||||..|+++++.|.++  |..++..+.++...|+......     .........+..+      .+.|+++-.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~-----~~~~~~~~~~~~~------~~~d~~f~~   70 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD-----QDITIEETTETAF------EGVDIALFS   70 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETT-----EEEEEEECCTTTT------TTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccC-----Ccccccccchhhh------hhhhhhhhc
Confidence            58999999999999999999999  7888888877666666544321     1233333333333      367888844


Q ss_pred             cCchhHHHHHHHHHHcCCcEEE
Q 031341          114 TDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVi  135 (161)
                      +.+....+.+..+.+.|+.||-
T Consensus        71 ~~~~~s~~~~~~~~~~~~~VID   92 (154)
T d2gz1a1          71 AGSSTSAKYAPYAVKAGVVVVD   92 (154)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCccchhhHHhhhccccceehh
Confidence            4555567888889999999885

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.60  E-value=2e-07  Score=65.48  Aligned_cols=103  Identities=16%  Similarity=0.232  Sum_probs=80.4

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|+|+|++   ++.|..+++.+. ..++++..+ .+..     .++      .|.+.|.+++++-.      .+|+++-|
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~-~~g~~V~pV-nP~~-----~~i------~G~~~y~sl~~lp~------~~D~vvi~   63 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLL-SKGFEVLPV-NPNY-----DEI------EGLKCYRSVRELPK------DVDVIVFV   63 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHH-HTTCEEEEE-CTTC-----SEE------TTEECBSSGGGSCT------TCCEEEEC
T ss_pred             EEEEEcccCCCCCcHHHHHHHHH-HCCCEEEEE-cccc-----ccc------cCccccccchhccc------cceEEEEE
Confidence            58999987   889999999997 567887654 3321     122      47889999999864      79999889


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ++|+...+.++.+++.|.+.+...+|...+   ++.++++++++-+.|
T Consensus        64 vp~~~~~~~l~~~~~~g~k~v~~~~g~~~~---~~~~~a~~~gi~vig  108 (116)
T d1y81a1          64 VPPKVGLQVAKEAVEAGFKKLWFQPGAESE---EIRRFLEKAGVEYSF  108 (116)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEECTTSCCH---HHHHHHHHHTCEEEC
T ss_pred             eCHHHHHHHHHHHHhcCCceEEeccchhhH---HHHHHHHHcCCEEEc
Confidence            999999999999999999998887775444   467888888776544

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=3.6e-07  Score=66.66  Aligned_cols=86  Identities=8%  Similarity=-0.029  Sum_probs=58.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV  110 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~---~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVV  110 (161)
                      |.||+|+||||..|+++++.|.++   |-.+++....+...|+.....     .....+....+ +.+.      +.|++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~-----~~~~~~~~~~~~~~~~------~~Div   69 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFG-----GTTGTLQDAFDLEALK------ALDII   69 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGG-----TCCCBCEETTCHHHHH------TCSEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccccc-----CCceeeecccchhhhh------cCcEE
Confidence            679999999999999999877655   777887766655444443211     12222322222 2333      79999


Q ss_pred             EEccCchhH-HHHHHHHHHcCCc
Q 031341          111 IDFTDASTV-YDNVKQATAFGMR  132 (161)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~g~~  132 (161)
                      + |+.|+.. .+.+..+.+.|..
T Consensus        70 F-~a~~~~~s~~~~~~~~~~g~~   91 (146)
T d1t4ba1          70 V-TCQGGDYTNEIYPKLRESGWQ   91 (146)
T ss_dssp             E-ECSCHHHHHHHHHHHHHTTCC
T ss_pred             E-EecCchHHHHhhHHHHhcCCC
Confidence            9 6667665 5788899999976

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.54  E-value=4.5e-07  Score=66.10  Aligned_cols=108  Identities=15%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc-
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (161)
                      |||+++| +|.||+.+++.+. ..++++. ++|++.  ....++.    +.+..+.++.+++..      ++|+++-+- 
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~-~~G~~V~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLL-KAGYSLV-VSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITMLP   65 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEe-hhHHHHHHHHHHH-HCCCeEE-EEeCCc--chhHHHH----HhhhhhcccHHHHHh------CCCeEEEEcC
Confidence            7999999 6999999999998 5789865 678643  2222332    345677889999886      699988544 


Q ss_pred             CchhHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          115 DASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 ~p~~~~~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .|+...+.+      ...++.|.-+|- .+..+++...++.+.+++.++-|
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~iiid-~sT~~p~~~~~~~~~~~~~g~~~  115 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTVLID-MSSIAPLASREISDALKAKGVEM  115 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHhCCcchhhccCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCce
Confidence            334444433      223334544444 44467788888888877765543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.53  E-value=4.2e-08  Score=71.18  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      |||+++|+ |+||+.+++.+.+....++. ++|++.  .....+.   +++++.++++.+++       .+.|+||.+..
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~-v~~r~~--~~~~~l~---~~~~~~~~~~~~~v-------~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGA--EKRERLE---KELGVETSATLPEL-------HSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSH--HHHHHHH---HHTCCEEESSCCCC-------CTTSEEEECSC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEE-EEeCCh--hHHHHhh---hhcccccccccccc-------cccceEEEecC
Confidence            79999995 99999999998877656665 677643  2222332   24577777777664       26899997777


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031341          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVS  146 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vVigttg~~~e~~~  146 (161)
                      |....+.++.....+..+|+-..|.+.++++
T Consensus        67 P~~~~~v~~~l~~~~~~viS~~ag~~~~~l~   97 (152)
T d1yqga2          67 PQDMEAACKNIRTNGALVLSVAAGLSVGTLS   97 (152)
T ss_dssp             HHHHHHHHTTCCCTTCEEEECCTTCCHHHHH
T ss_pred             HHHHHHhHHHHhhcccEEeecccCCCHHHHH
Confidence            8777666655444556555555688766543

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.51  E-value=3.7e-07  Score=65.19  Aligned_cols=108  Identities=14%  Similarity=0.124  Sum_probs=78.7

Q ss_pred             eeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      =+|+|+|++   |+.|..+++.+...-.-++..| .+..     .+      -.|.+.|.|++++-.      .+|.++-
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pV-nP~~-----~~------i~G~~~y~sl~dlp~------~vDlvvi   70 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPV-NIKE-----EE------VQGVKAYKSVKDIPD------EIDLAII   70 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEE-CSSC-----SE------ETTEECBSSTTSCSS------CCSEEEE
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEe-ccCc-----cc------cCCeEeecchhhcCC------CCceEEE
Confidence            479999998   9999999999875433465544 3321     11      247889999999864      7999998


Q ss_pred             ccCchhHHHHHHHHHHcCCcE-EEeCCCCCH------HHHHHHHHHhhhcCeeecC
Q 031341          113 FTDASTVYDNVKQATAFGMRS-VVYVPHIQL------ETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~v-Vigttg~~~------e~~~~L~~~A~~~~Vv~tg  161 (161)
                      +++|+...+.++.+.+.|++- ++=+.||++      +..++|.++|++.++-.-|
T Consensus        71 ~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G  126 (129)
T d2csua1          71 VVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (129)
T ss_dssp             CSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             ecChHHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence            998899999999999999884 444556643      2234688889887665443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.45  E-value=1.7e-06  Score=63.07  Aligned_cols=109  Identities=14%  Similarity=0.120  Sum_probs=70.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |.||+++| +|.||+.+++.|.+ .++++. ++|++.  .....+.    ..+.....++.+++.      ..|+++.+-
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVISML   65 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------SCSEEEECC
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHH-CCCeEE-EEECch--hhhhhhh----hhhccccchhhhhcc------ccCeeeecc
Confidence            67999999 69999999999984 688854 678642  2222222    345566678888875      688877444


Q ss_pred             CchhHHH-HH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          115 DASTVYD-NV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 ~p~~~~~-~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ......+ ..      ...+..| .+|+-++..+++...++.+.+++.++-|
T Consensus        66 ~~~~~~~~v~~~~~~~~~~l~~g-~iiid~st~~p~~~~~~~~~~~~~gi~~  116 (162)
T d3cuma2          66 PASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAM  116 (162)
T ss_dssp             SCHHHHHHHHHSTTCHHHHSCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             cchhhHHHHHhccccccccCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCcE
Confidence            3332222 22      2223334 3556565677888888888887765543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.41  E-value=1.2e-06  Score=63.50  Aligned_cols=102  Identities=14%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-e-eeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-I-PVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~-i-~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |||+|+| +|+||..+++.+. ..+.++++ +|++..  ......    +.+ + ...++++ ++      .++|+||.+
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~-~~g~~V~~-~d~~~~--~~~~a~----~~~~~~~~~~~~~-~~------~~~DiIila   64 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLR-RRGHYLIG-VSRQQS--TCEKAV----ERQLVDEAGQDLS-LL------QTAKIIFLC   64 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSCHH--HHHHHH----HTTSCSEEESCGG-GG------TTCSEEEEC
T ss_pred             CEEEEEe-ecHHHHHHHHHHH-HCCCEEEE-EECCch--HHHHHH----Hhhccceeeeecc-cc------ccccccccc
Confidence            7999999 5999999999986 67899774 686431  111111    112 2 2334444 44      379999966


Q ss_pred             cCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341          114 TDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus       114 T~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                      +++....+.+.....  .+..+|+-+++........+.++..
T Consensus        65 vp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~  106 (165)
T d2f1ka2          65 TPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS  106 (165)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred             CcHhhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhhc
Confidence            666655555554444  3455666665555555555555543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.36  E-value=1.2e-06  Score=63.21  Aligned_cols=101  Identities=18%  Similarity=0.156  Sum_probs=77.1

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|+|+|++   ++.|..+++.+.+ .++++..| .+..     .++      .|.++|.+++++-.      .+|+++-|
T Consensus        21 sIAVVGaS~~~~~~g~~v~~~L~~-~g~~v~pV-nP~~-----~~i------~G~~~~~sl~dlp~------~iD~v~i~   81 (139)
T d2d59a1          21 KIALVGASPKPERDANIVMKYLLE-HGYDVYPV-NPKY-----EEV------LGRKCYPSVLDIPD------KIEVVDLF   81 (139)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHH-TTCEEEEE-CTTC-----SEE------TTEECBSSGGGCSS------CCSEEEEC
T ss_pred             eEEEEeecCCCCCchHHHHHHHHH-CCCEEEEE-CCcc-----ccc------CCCcccccccccCc------cceEEEEE
Confidence            69999998   8999999999974 57886644 3321     122      47789999999764      79998889


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .+|+...+.++.+++.|.+.|.--+|...|+   +.++|+++++-+
T Consensus        82 vp~~~~~~~~~e~~~~g~k~v~~~~G~~~ee---~~~~a~~~gi~v  124 (139)
T d2d59a1          82 VKPKLTMEYVEQAIKKGAKVVWFQYNTYNRE---ASKKADEAGLII  124 (139)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEECTTCCCHH---HHHHHHHTTCEE
T ss_pred             eCHHHHHHHHHHHHHhCCCEEEEeccccCHH---HHHHHHHCCCEE
Confidence            9999999999999999999887766543333   566777776643

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=98.34  E-value=4.4e-07  Score=67.89  Aligned_cols=97  Identities=16%  Similarity=0.186  Sum_probs=62.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-------------------CCCCeeee--CC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--SD   93 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-------------------~~~~i~v~--~d   93 (161)
                      ++||||.| .||+||.+.|++.+.++++++++-|+...-....-++...                   ....++++  .+
T Consensus         1 kikIgING-FGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~   79 (169)
T d1u8fo1           1 KVKVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD   79 (169)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             CcEEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC
Confidence            58999999 6999999999999999999999998421101111111000                   01123332  45


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      ++++-..   +.++|+|+|+|-.....+.+..-++.|..=|+
T Consensus        80 p~~i~W~---~~~vDiViEcTG~f~~~~~~~~hl~~gakkVi  118 (169)
T d1u8fo1          80 PSKIKWG---DAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI  118 (169)
T ss_dssp             GGGCCTT---TTTCCEEEECSSSCCSHHHHGGGGGGTCSEEE
T ss_pred             hhhCCcc---ccCCCEEEEecceeccHHHHHHHHhcCCceEe
Confidence            5665432   35799999999776666666666777854443

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=8.4e-07  Score=66.18  Aligned_cols=96  Identities=25%  Similarity=0.212  Sum_probs=63.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhh------hcCCCCCCeeee--CCH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMV------CDMEQPLEIPVM--SDL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-------------~g~~~~~~------~g~~~~~~i~v~--~dl   94 (161)
                      |||||.| .||+||.+.|++.+.++++++++-|...             -|+--.++      +-+ ....++++  .++
T Consensus         2 ikigING-FGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~i-ng~~I~i~~~~~p   79 (166)
T d1gado1           2 IKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIV-NGKKIRVTAERDP   79 (166)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEECCSSG
T ss_pred             eEEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEE-CCEEEEEEeCCCh
Confidence            7999999 6999999999999999999999988420             01100000      000 01224444  456


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEe
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVig  136 (161)
                      +++...   +.++|+|||+|-.....+.+..-++.|.. |++-
T Consensus        80 ~~i~W~---~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiS  119 (166)
T d1gado1          80 ANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMT  119 (166)
T ss_dssp             GGGCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEES
T ss_pred             HHCCcc---ccCCCEEEEccccccCHHHHHHHhcCCCceEEee
Confidence            666432   24799999999776667777777888844 4443

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.19  E-value=1.8e-06  Score=64.28  Aligned_cols=96  Identities=19%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-------------------CCCCeeee--CCH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--SDL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-------------------~~~~i~v~--~dl   94 (161)
                      .||||.| .||+||.+.|.+.+.++++++++-|+........-++...                   ....++++  .++
T Consensus         1 tkigING-fGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           1 TKLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred             CeEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence            4899999 6999999999999999999999988421101111111000                   01223333  566


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      +++...   +.++|+|||+|--....+.+...++.|..=|+
T Consensus        80 ~~i~W~---~~gvdiViEcTG~f~~~~~~~~hl~~gakkVi  117 (166)
T d2b4ro1          80 SQIPWG---KCQVDVVCESTGVFLTKELASSHLKGGAKKVI  117 (166)
T ss_dssp             GGCCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEE
T ss_pred             HHcccc---ccCCCEEEEecccccchhhhhhhhccCCCEEE
Confidence            665442   34799999999766667777777788854443

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.18  E-value=1.8e-06  Score=65.56  Aligned_cols=97  Identities=23%  Similarity=0.183  Sum_probs=59.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEecCCCCcchhhhhcCCC-----C--------------------
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDSHSVGEDIGMVCDMEQ-----P--------------------   85 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~----~~~eLvavvd~~~~g~~~~~~~g~~~-----~--------------------   85 (161)
                      +|||||.| .||+||.+.|.+.+.    ++++++++.|....-..+.-++...+     +                    
T Consensus         2 ~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~   80 (190)
T d1k3ta1           2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV   80 (190)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred             CeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence            58999999 699999999988754    67999999995211011111110000     0                    


Q ss_pred             CCee---e--eCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341           86 LEIP---V--MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus        86 ~~i~---v--~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      .+-.   +  ..+++++-..   +.++|+|||+|--....+.+...++.|..=|+
T Consensus        81 ~g~~i~~~~~~~~p~~i~W~---~~gvDiViEcTG~f~~~~~a~~hl~~GakkVi  132 (190)
T d1k3ta1          81 NGHRILCVKAQRNPADLPWG---KLGVEYVIESTGLFTAKAAAEGHLRGGARKVV  132 (190)
T ss_dssp             TTEEEEEEECCSCGGGSCHH---HHTCCEEEECSSSCCBHHHHTHHHHTTCSEEE
T ss_pred             cCceEEecccCCChhHCCHh---hcCCcEEEEecccccccccchhhcccCcceee
Confidence            0101   1  2345554321   23789999999766667777777788855444

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.17  E-value=2.9e-06  Score=63.75  Aligned_cols=102  Identities=15%  Similarity=0.204  Sum_probs=65.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------CCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--------~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~  106 (161)
                      |-||+|+|+ |.||..++..+. ..+.++. +.+++.        .+.+..-+-+..-+.++.+++|+++++.      +
T Consensus         7 m~KI~ViGa-G~wGtAlA~~La-~~g~~V~-l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~------~   77 (189)
T d1n1ea2           7 LNKAVVFGS-GAFGTALAMVLS-KKCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------G   77 (189)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHH-TTEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------T
T ss_pred             eceEEEECC-CHHHHHHHHHHH-HcCCeEE-EEEecHHHHHHHhhcccccccccccccccccccchhhhhccC------C
Confidence            568999995 999999999876 5566644 445321        0111111112222446788999999985      7


Q ss_pred             ccEEEEccCchhH-HHHHHH--------HHHcCCcEEEeCCCCCHHHHH
Q 031341          107 RAVVIDFTDASTV-YDNVKQ--------ATAFGMRSVVYVPHIQLETVS  146 (161)
Q Consensus       107 ~DVVIDfT~p~~~-~~~~~~--------al~~g~~vVigttg~~~e~~~  146 (161)
                      .|++| ++.|... .+.++.        .++.+.++|+.+-|+..+...
T Consensus        78 ad~ii-iavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~  125 (189)
T d1n1ea2          78 AEIIL-FVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK  125 (189)
T ss_dssp             CSCEE-ECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCC
T ss_pred             CCEEE-EcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCcc
Confidence            89998 5555544 343332        457888999887788654433

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=3e-06  Score=60.74  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=78.0

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .|+|+|+|   ++.|..+++.+. ..++....+--+ ..+.   +      -.|.+.|.+++++-.      .+|+++-|
T Consensus        15 sIAVVGaS~~~~k~g~~v~~~L~-~~g~~~~~v~~~-~~~~---~------i~g~~~~~~l~~i~~------~iD~v~v~   77 (136)
T d1iuka_          15 TIAVLGAHKDPSRPAHYVPRYLR-EQGYRVLPVNPR-FQGE---E------LFGEEAVASLLDLKE------PVDILDVF   77 (136)
T ss_dssp             EEEEETCCSSTTSHHHHHHHHHH-HTTCEEEEECGG-GTTS---E------ETTEECBSSGGGCCS------CCSEEEEC
T ss_pred             eEEEEeecCCCCCchHHHHHHHh-cCCCCceEEEec-cccc---e------eeceecccchhhccC------CCceEEEe
Confidence            69999987   789999999987 667876533322 1111   1      247788999998763      79999889


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      .+|+...+.++.|.+.|+..+.-.+|...++   +.++|+++++
T Consensus        78 ~p~~~v~~~v~~~~~~g~k~i~~q~G~~~~e---~~~~a~~~Gi  118 (136)
T d1iuka_          78 RPPSALMDHLPEVLALRPGLVWLQSGIRHPE---FEKALKEAGI  118 (136)
T ss_dssp             SCHHHHTTTHHHHHHHCCSCEEECTTCCCHH---HHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHhhCCCeEEEecCccCHH---HHHHHHHcCC
Confidence            9999999999999999999998888875544   6788888765

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=98.14  E-value=1.6e-06  Score=64.91  Aligned_cols=95  Identities=24%  Similarity=0.218  Sum_probs=62.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhh------hcCCCCCCeee--eCCH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMV------CDMEQPLEIPV--MSDL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-------------~g~~~~~~------~g~~~~~~i~v--~~dl   94 (161)
                      +||||.| .||+||.+.|++.+.++++++++=|...             -|+...++      +-+. ...+.+  ..++
T Consensus         2 ikIgING-fGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~-g~~i~i~~~~~p   79 (171)
T d3cmco1           2 VKVGING-FGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVN-GKEIIVKAERDP   79 (171)
T ss_dssp             EEEEEES-CSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEECCSSG
T ss_pred             eEEEEEC-CCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeC-CcceeeEecCCH
Confidence            7999999 6999999999999999999999977320             01100000      0000 112333  3566


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVi  135 (161)
                      +++...   +.++|+|||+|-.....+.+..-++.|.. |++
T Consensus        80 ~~i~W~---~~~vDiViEcTG~f~t~~~~~~hl~~gakkVii  118 (171)
T d3cmco1          80 ENLAWG---EIGVDIVVESTGRFTKREDAAKHLEAGAKKVII  118 (171)
T ss_dssp             GGCCTG---GGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             HHcccc---ccCCcEEEEecCccCCHHHHHHHHhCCCceEEE
Confidence            665442   35799999999776667777777788854 444

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=98.12  E-value=3.5e-06  Score=63.01  Aligned_cols=96  Identities=19%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCC-------------------CCCCeeee--
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--   91 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~---~~~~eLvavvd~~~~g~~~~~~~g~~-------------------~~~~i~v~--   91 (161)
                      |||||.| .||+||.+.|++.+   .++++++++-|... -....-++...                   ....++++  
T Consensus         2 ikigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~~~-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~   79 (173)
T d1obfo1           2 IRVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDLGD-PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN   79 (173)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECSSC-HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred             eEEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCCCC-hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec
Confidence            8999999 69999999999875   57899999988421 01111010000                   01223343  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEe
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVig  136 (161)
                      .+++++...   +.++|+|||+|--....+.+..-++.|.. ||+-
T Consensus        80 ~~p~~i~W~---~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiS  122 (173)
T d1obfo1          80 RNPAQLPWG---ALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIIS  122 (173)
T ss_dssp             SCGGGSCTT---TTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEES
T ss_pred             CCHHHCccc---ccccceEEEecccccCHHHHHHHhccCCcceEEe
Confidence            566666442   35799999999766666677777777855 4443

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.08  E-value=3.4e-06  Score=63.06  Aligned_cols=98  Identities=19%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhh--hc--C--CCCCCeeee--C
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMV--CD--M--EQPLEIPVM--S   92 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~~-------------~g~~~~~~--~g--~--~~~~~i~v~--~   92 (161)
                      |||||.| .||+||.+.|.+.+.  +++++|++-|+..             -|+-..+.  .+  .  .....++++  .
T Consensus         1 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~   79 (172)
T d1rm4a1           1 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR   79 (172)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence            7999999 799999999988864  4499999888420             01100000  00  0  001123333  4


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeC
Q 031341           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYV  137 (161)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVigt  137 (161)
                      +++++-..   +.++|+|||+|-.....+.+..-++.|. .|++-.
T Consensus        80 ~p~~i~W~---~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSA  122 (172)
T d1rm4a1          80 NPVNLPWG---DMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITA  122 (172)
T ss_dssp             CGGGSCHH---HHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESS
T ss_pred             ChHHCChh---hcCCCEEEecCceEccHHHHHHHHhcCCceEEeec
Confidence            55654331   2478999999966555666666777785 555543

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=9.9e-06  Score=66.30  Aligned_cols=102  Identities=12%  Similarity=0.114  Sum_probs=76.0

Q ss_pred             CCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc------Cc
Q 031341           44 VKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DA  116 (161)
Q Consensus        44 ~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~-g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT------~p  116 (161)
                      +|+||..++|   ..+..+++++. ++..|++.++.+ |.  ..++|++.|++++++     ..++++|.=.      .|
T Consensus        25 ~gKTa~gLlR---y~~~~~v~~V~-~~~aG~~~~~~l~g~--~~~IPIv~s~~~A~~-----~g~~~liiGvAp~GG~lp   93 (338)
T d2g0ta1          25 HAKTTYGLLR---HSRLFKPVCVV-AEHEGKMASDFVKPV--RYDVPVVSSVEKAKE-----MGAEVLIIGVSNPGGYLE   93 (338)
T ss_dssp             GGHHHHHHHH---HCSSEEEEEEE-SSCTTCBGGGTCC-C--CSCCBEESSHHHHHH-----TTCCEEEECCCSCCHHHH
T ss_pred             CchHhhhHHh---ccCCCeEEEEE-CCCCCCchhhhcCCC--CCCCCEeCCHHHHHh-----cCCCEEEEEecccCCcCC
Confidence            5788888765   35667776555 466899998864 44  568999999999998     4899888533      35


Q ss_pred             hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus       117 ~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +...+.+..|+++|.++|.|--.+ ..+..+|.++|++.++
T Consensus        94 ~~w~~~i~~Al~~Gl~IvsGLH~~-L~ddpel~~~A~~~g~  133 (338)
T d2g0ta1          94 EQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGT  133 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCeEEecchhh-hccCHHHHHHHHhCCC
Confidence            677789999999999999986533 3456678888888765

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=98.04  E-value=4.6e-06  Score=62.04  Aligned_cols=94  Identities=26%  Similarity=0.276  Sum_probs=59.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-------------------CCCCeeee--CCH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--SDL   94 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-------------------~~~~i~v~--~dl   94 (161)
                      |||+|.| .||+||.+.|.+. .++++++++-|... -....-++...                   ....++++  .++
T Consensus         1 ikigING-fGRIGR~~~R~l~-~~~i~iv~INd~~~-~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p   77 (168)
T d2g82a1           1 MKVGING-FGRIGRQVFRILH-SRGVEVALINDLTD-NKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDP   77 (168)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HHTCCEEEEECSSC-HHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             CEEEEEC-CcHHHHHHHHHHh-cCCCEEEEECCCcc-hhhhhheeecccccCccccccccccceeEecceeEEEEecCCh
Confidence            7999999 6999999999876 67899999988421 01111111000                   01123333  456


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEE
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVV  135 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVi  135 (161)
                      +++...   +.++|+|+|+|--....+.+...++.|. .||+
T Consensus        78 ~~i~W~---~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii  116 (168)
T d2g82a1          78 KEIPWA---EAGVGVVIESTGVFTDADKAKAHLEGGAKKVII  116 (168)
T ss_dssp             GGCCTG---GGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             HHCccc---ccCCceeEeccccccchHHhhhhhccccceeee
Confidence            665442   3579999999966666666667777774 4444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.02  E-value=1.7e-05  Score=56.50  Aligned_cols=108  Identities=15%  Similarity=0.136  Sum_probs=68.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee------CCHHHHHhcccccCCccEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM------SDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~------~dl~~~l~~~~~~~~~DVV  110 (161)
                      ||.|+|+ |+||+.+++.|. ..+.++ -++|++.  ..+.++.... .......      ...++.+      ...|++
T Consensus         4 ~IliiGa-G~~G~~~a~~L~-~~g~~V-~v~dr~~--~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~i------~~~~~~   71 (182)
T d1e5qa1           4 SVLMLGS-GFVTRPTLDVLT-DSGIKV-TVACRTL--ESAKKLSAGV-QHSTPISLDVNDDAALDAEV------AKHDLV   71 (182)
T ss_dssp             EEEEECC-STTHHHHHHHHH-TTTCEE-EEEESCH--HHHHHHHTTC-TTEEEEECCTTCHHHHHHHH------TTSSEE
T ss_pred             EEEEECC-CHHHHHHHHHHH-hCCCEE-EEEECCh--HHHHHHHhcc-cccccccccccchhhhHhhh------hcccee
Confidence            7999996 999999999887 558885 5888653  1222222110 1111111      1233344      368888


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      +..++.......+..+.+.+.+++. .+ ...+....|.+.+++...+
T Consensus        72 i~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~  117 (182)
T d1e5qa1          72 ISLIPYTFHATVIKSAIRQKKHVVT-TS-YVSPAMMELDQAAKDAGIT  117 (182)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCEEEC-SS-CCCHHHHHTHHHHHHTTCE
T ss_pred             EeeccchhhhHHHHHHHhhccceee-cc-cCcHHHHHHHHHhccccce
Confidence            8777777777888899999999764 32 3344566677776665543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.99  E-value=7.9e-05  Score=54.44  Aligned_cols=115  Identities=10%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|+++| .|.||..+++.|. ..++++. ++|++.  .+..++.... .........+.++..+.   -..+|+++.+.
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMN-DHGFVVC-AFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSK---LKKPRRIILLV   74 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHH-HTTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHH---BCSSCEEEECS
T ss_pred             CcEEEEe-EhHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHHHhccccccccchhhhhhhhhh---hcccceEEEec
Confidence            4799999 6999999999998 5688875 778653  2222222110 01112223444444322   13678777443


Q ss_pred             C-chhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          115 D-ASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 ~-p~~~~~~~---~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      + ++...+..   ...++.|.- |+-++..++++..++.+..++.++-|
T Consensus        75 ~~~~~v~~v~~~l~~~~~~g~i-iid~sT~~~~~~~~~~~~~~~~g~~~  122 (176)
T d2pgda2          75 KAGQAVDNFIEKLVPLLDIGDI-IIDGGNSEYRDTMRRCRDLKDKGILF  122 (176)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTCE-EEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CchHHHHHHHHHHHhccccCcE-EEecCcchhHHHHHHHHHHHhcCCce
Confidence            3 33333333   333444554 44444466777777877777766543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=2.3e-05  Score=55.73  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=58.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |||+|+|+ |.||..++..+. ..+.++..+........... ..+.. ......+..+..+.+.      .+|+++.++
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~-~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALC-KQGHEVQGWLRVPQPYCSVN-LVETDGSIFNESLTANDPDFLA------TSDLLLVTL   71 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEECSSCCSEEEEE-EECTTSCEEEEEEEESCHHHHH------TCSEEEECS
T ss_pred             CEEEEECc-CHHHHHHHHHHH-HCCCceEEEEcCHHHhhhhc-cccCCccccccccccchhhhhc------ccceEEEee
Confidence            79999996 999999999987 56888775544322111111 11110 0112233344445453      799999777


Q ss_pred             CchhHHHHHHHHH---HcCCcEEEeCCCCCHH
Q 031341          115 DASTVYDNVKQAT---AFGMRSVVYVPHIQLE  143 (161)
Q Consensus       115 ~p~~~~~~~~~al---~~g~~vVigttg~~~e  143 (161)
                      .+....+.++...   ..+..+++...|+..+
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             cccchHHHHHhhccccCcccEEeeccCcccHH
Confidence            6665555554433   3466688877787544

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=0.00014  Score=51.48  Aligned_cols=93  Identities=13%  Similarity=0.187  Sum_probs=57.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .|-||+|+|++|.||+.+++.+. ..++++. ++|+...                   .+.++.+      ..+|.++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~-~~G~~V~-~~d~~~~-------------------~~~~~~~------~~~~~v~~~   60 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLR-ASGYPIS-ILDREDW-------------------AVAESIL------ANADVVIVS   60 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHH-TTTCCEE-EECTTCG-------------------GGHHHHH------TTCSEEEEC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHH-HcCCCcE-ecccccc-------------------cccchhh------hhccccccc
Confidence            45699999977999999999986 6688865 5665321                   1122333      257777766


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHHhh
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                      +++....+.+...+..  .-.+++-++....+..+++.+...
T Consensus        61 ~~~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~  102 (152)
T d2pv7a2          61 VPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT  102 (152)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS
T ss_pred             cchhhheeeeecccccccCCceEEEecccCHHHHHHHHHHcc
Confidence            6666665555554443  123455555555565666655443

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=1.3e-05  Score=59.60  Aligned_cols=95  Identities=19%  Similarity=0.222  Sum_probs=58.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCC-------------------CCCCeeee--CC
Q 031341           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--SD   93 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~-------------------~~~~i~v~--~d   93 (161)
                      ||||.| .||+||.+.|++.+  .+++++|++=|... -....-++...                   ....++++  .+
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~~~-~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~   79 (169)
T d1hdgo1           2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDLTD-TKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECSSC-HHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccCcc-HHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC
Confidence            899999 69999999999885  57899999977410 00111111000                   01123332  45


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEe
Q 031341           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVY  136 (161)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVig  136 (161)
                      ++++-..   +.++|+|||+|-.....+.+...++.|. .||+-
T Consensus        80 p~~i~W~---~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiS  120 (169)
T d1hdgo1          80 PSKLPWK---DLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT  120 (169)
T ss_dssp             GGGSCHH---HHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEES
T ss_pred             hhhCCcc---ccCCCEEEEecceeccccchhhhccCCCceEEEe
Confidence            6665331   2478999999966666667777777774 45553

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.87  E-value=6.5e-05  Score=54.72  Aligned_cols=116  Identities=12%  Similarity=0.131  Sum_probs=65.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcC-CCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~-~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      |||+|+| .|+||..+++.|. ..++++. ++|++... .++.+..+. ..........+.+.+...+   ...+.+++.
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~-~~G~~V~-~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   75 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIA-EKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKALIL   75 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHH-HTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEEEC
T ss_pred             CEEEEEe-ehHHHHHHHHHHH-HCCCeEE-EEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhc---ccceEEEEe
Confidence            7999999 6999999999998 5588864 78864210 111111000 0011233445666654432   355666655


Q ss_pred             cCchhHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          114 TDASTVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       114 T~p~~~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      ..+....    ..+...++.|.-+|..+| .++++..++.+..++.++-
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~iii~~st-~~~~~~~~~~~~l~~~~~~  123 (178)
T d1pgja2          76 VQAGAATDSTIEQLKKVFEKGDILVDTGN-AHFKDQGRRAQQLEAAGLR  123 (178)
T ss_dssp             CCCSHHHHHHHHHHHHHCCTTCEEEECCC-CCHHHHHHHHHHHHTTTCE
T ss_pred             ecCcchhhhhhhhhhhhccccceecccCc-cchhHHHHHHHHHhhccee
Confidence            5554332    344445555555444444 5667777777666665543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=2.7e-05  Score=57.77  Aligned_cols=87  Identities=22%  Similarity=0.254  Sum_probs=54.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------eCCHHHHHhcccccCCc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKAR  107 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-------~~dl~~~l~~~~~~~~~  107 (161)
                      |-||.|.|++|++|+.+++.+++ .+.++.++..+...   ..+.    .+.++.+       .+++++++.      +.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~-~g~~V~~~~R~~~~---~~~~----~~~~~~~~~gD~~d~~~l~~al~------~~   68 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSR---LPSE----GPRPAHVVVGDVLQAADVDKTVA------GQ   68 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCGGG---SCSS----SCCCSEEEESCTTSHHHHHHHHT------TC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEcChhh---cccc----cccccccccccccchhhHHHHhc------CC
Confidence            57999999999999999999984 58999988863211   0000    0112211       133445554      78


Q ss_pred             cEEEEccCch-----------hHHHHHHHHHHcCCcEEE
Q 031341          108 AVVIDFTDAS-----------TVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       108 DVVIDfT~p~-----------~~~~~~~~al~~g~~vVi  135 (161)
                      |+||.+..+.           .....+..+.++|++-++
T Consensus        69 d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i  107 (205)
T d1hdoa_          69 DAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV  107 (205)
T ss_dssp             SEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEE
Confidence            9999765221           223455677788876443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.79  E-value=0.00018  Score=51.58  Aligned_cols=106  Identities=14%  Similarity=0.063  Sum_probs=60.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |-||+|+| +|.||..+++.+.+. .+.++. ++|++....+...      +.+.  ...++.++...     ..+|++|
T Consensus         1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~-~~D~~~~~~~~a~------~~~~~~~~~~~~~~~~~-----~~~dlIi   67 (171)
T d2g5ca2           1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIY-GYDINPESISKAV------DLGIIDEGTTSIAKVED-----FSPDFVM   67 (171)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHH------HTTSCSEEESCGGGGGG-----TCCSEEE
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEE-EEECChHHHHHHH------Hhhcchhhhhhhhhhhc-----ccccccc
Confidence            34799999 599999999999754 345655 4675421111111      1121  23455555443     4789999


Q ss_pred             EccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCD  153 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~L~~~A~  153 (161)
                      -+++|+...+.+.....  ..-.+|+-+.+....-.+.+.+...
T Consensus        68 la~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~  111 (171)
T d2g5ca2          68 LSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG  111 (171)
T ss_dssp             ECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred             ccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhc
Confidence            77777777666654333  2334665555443344445554433

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=97.72  E-value=1.4e-05  Score=59.51  Aligned_cols=94  Identities=20%  Similarity=0.214  Sum_probs=56.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-------------------CCCCeeee--CCHH
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--SDLT   95 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-------------------~~~~i~v~--~dl~   95 (161)
                      ||||.| .||+||.+.|++.+. +++++++-|+...-....-++...                   ....++++  .+++
T Consensus         2 kIgING-fGRIGR~~~R~~~~~-~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEM-GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEC-CcHHHHHHHHHHHhC-CCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence            899999 799999999999866 689999998421101111111000                   01123333  4555


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi  135 (161)
                      ++-..   +.++|+|||+|--....+.+...++.|..=|+
T Consensus        80 ~i~W~---~~gvD~ViEcTG~f~~~~~~~~hl~~gakkVi  116 (169)
T d1dssg1          80 NIPWS---KAGAEYIVESTGVFTTIEKASAHFKGGAKKVI  116 (169)
T ss_dssp             GCCHH---HHTCCEEEECSSSCCSHHHHGGGGTTTCSEEE
T ss_pred             HCCcc---ccCCCEEEecCceEcCHHHHHHHHhcCCceEe
Confidence            54321   24789999998665555666666666744443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.62  E-value=0.00031  Score=50.33  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~--------g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~  106 (161)
                      -||+|+|+ |.||..++..+.+ .|.++. ++++...        +.......+.. ......+++|+++++.      +
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~-~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~   72 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK------D   72 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT------T
T ss_pred             CEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc------C
Confidence            48999995 9999999999874 688866 6664310        00000000000 0122345688999885      7


Q ss_pred             ccEEEEccCchhHHHHHHH---HHHcCCcEEEeCCCC
Q 031341          107 RAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHI  140 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~---al~~g~~vVigttg~  140 (161)
                      +|++|-++.+..+.+.+..   .+..+.. |+...|.
T Consensus        73 aD~iii~v~~~~~~~~~~~i~~~l~~~~~-iv~~~g~  108 (184)
T d1bg6a2          73 ADVILIVVPAIHHASIAANIASYISEGQL-IILNPGA  108 (184)
T ss_dssp             CSEEEECSCGGGHHHHHHHHGGGCCTTCE-EEESSCC
T ss_pred             CCEEEEEEchhHHHHHHHHhhhccCCCCE-EEEeCCC
Confidence            9999977666655544443   3334554 4555544

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.60  E-value=0.00014  Score=53.49  Aligned_cols=96  Identities=19%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---------CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~---------g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~  106 (161)
                      |||+|+|+ |.||..++..+. ..+.++. +..+...         .+.-..+........+..++|+++++.      +
T Consensus         1 MkI~ViGa-G~~GtalA~~la-~~g~~V~-l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~   71 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLV-DNGNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE------N   71 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHH-HHCCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT------T
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh------c
Confidence            79999995 999999999987 4566654 3332110         000001100001223455788999885      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHH--cCCcEEEeCCCC
Q 031341          107 RAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHI  140 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~--~g~~vVigttg~  140 (161)
                      +|+||..+++....+.+.....  .+.++|+-+.|+
T Consensus        72 ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~  107 (180)
T d1txga2          72 AEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL  107 (180)
T ss_dssp             CSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             cchhhcccchhhhHHHHHhhccccccceecccccCc
Confidence            9999966666655555554333  345667666664

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.58  E-value=2.7e-06  Score=60.80  Aligned_cols=90  Identities=8%  Similarity=-0.029  Sum_probs=46.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCch
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~  117 (161)
                      |+++| +|+||+.+++.+.  .+.++..+++++.  .+..++..   ..+. .+.+++++..      ..|+|+-+.+|+
T Consensus         2 IgfIG-~G~mg~~l~~~L~--~~~~~~~v~~R~~--~~~~~l~~---~~~~-~~~~~~~~~~------~~DiVil~v~d~   66 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLK--DRYEIGYILSRSI--DRARNLAE---VYGG-KAATLEKHPE------LNGVVFVIVPDR   66 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTCC-CCCSSCCCCC---------CEEECSCTT
T ss_pred             EEEEe-CcHHHHHHHHHHH--hCCCEEEEEeCCh--hhhcchhh---cccc-cccchhhhhc------cCcEEEEeccch
Confidence            68999 6999999999774  3667777788653  12222221   1222 2446666553      689988555555


Q ss_pred             hHHHHHHHHHHcCCcEEEeCCCCCH
Q 031341          118 TVYDNVKQATAFGMRSVVYVPHIQL  142 (161)
Q Consensus       118 ~~~~~~~~al~~g~~vVigttg~~~  142 (161)
                      ...+.+......+.-+|..+++.+.
T Consensus        67 ~i~~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          67 YIKTVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             THHHHHTTTCCSSCCEEECCSSSCG
T ss_pred             hhhHHHhhhcccceeeeecccchhh
Confidence            4444443322344444433334443

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=97.52  E-value=0.00064  Score=49.18  Aligned_cols=102  Identities=9%  Similarity=0.025  Sum_probs=68.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC------------------cc-hhhhhcCCCCCCeeeeCCH
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG------------------ED-IGMVCDMEQPLEIPVMSDL   94 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g------------------~~-~~~~~g~~~~~~i~v~~dl   94 (161)
                      |-||+|.|+||.+|+..++.+.+.| .++++++..+....                  .. ..++.......++.++...
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~   81 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   81 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence            4789999999999999999998875 59999999853210                  00 0000000012345555554


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      +.+.. ++ ..+.|.++-...=....+-+..|+++|+.+-+..-
T Consensus        82 ~~l~~-~~-~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLANK  123 (150)
T d1r0ka2          82 DALVE-AA-MMGADWTMAAIIGCAGLKATLAAIRKGKTVALANK  123 (150)
T ss_dssp             HHHHH-HH-TSCCSEEEECCCSGGGHHHHHHHHHTTSEEEECCS
T ss_pred             cchhe-ec-ccccceeeeecCchhHHHHHHHHHhcCCEEEEecc
Confidence            44321 11 25799998666667778899999999999988653

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=0.00048  Score=49.09  Aligned_cols=104  Identities=14%  Similarity=0.045  Sum_probs=55.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      ||+++| .|+||+.+++.|. ..+..+  ++++..  .+..++..   ..+ ......+.+.       ..|+++ ...|
T Consensus         2 kIg~IG-lG~MG~~ma~~L~-~~g~~~--~~~~~~--~~~~~~~~---~~~-~~~~~~~~~~-------~~~~~i-~~~~   63 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLA-RRFPTL--VWNRTF--EKALRHQE---EFG-SEAVPLERVA-------EARVIF-TCLP   63 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHH-TTSCEE--EECSST--HHHHHHHH---HHC-CEECCGGGGG-------GCSEEE-ECCS
T ss_pred             eEEEEe-HHHHHHHHHHHHH-hCCCEE--EEeCCH--HHHHHHHH---HcC-Cccccccccc-------ceeEEE-eccc
Confidence            799999 6999999999997 456654  344332  11111110   111 1123333332       456655 3333


Q ss_pred             --hhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341          117 --STVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       117 --~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (161)
                        ..........   +..+. +++-++..++++..++.+.+++.++-|
T Consensus        64 ~~~~v~~~~~~l~~~~~~~~-~iid~sT~~p~~~~~~~~~~~~~gi~~  110 (156)
T d2cvza2          64 TTREVYEVAEALYPYLREGT-YWVDATSGEPEASRRLAERLREKGVTY  110 (156)
T ss_dssp             SHHHHHHHHHHHTTTCCTTE-EEEECSCCCHHHHHHHHHHHHTTTEEE
T ss_pred             chhhhhhhhccccccccccc-cccccccCCHHHHHHHHHHHHHcCCeE
Confidence              3333322222   22333 344444577888888888777766543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00041  Score=54.27  Aligned_cols=93  Identities=18%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----CCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~----~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |||.|.|++|.+|+.+++.|.+....++.++ |+...  ....+....    -..++.-.+++.+...     .++|+|+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~l-d~~~~--~~~~~~~~~~~~~i~~Di~~~~~~~~~~~-----~~~d~Vi   72 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGL-DIGSD--AISRFLNHPHFHFVEGDISIHSEWIEYHV-----KKCDVVL   72 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEE-ESCCG--GGGGGTTCTTEEEEECCTTTCSHHHHHHH-----HHCSEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEE-eCCCc--chhhhccCCCeEEEECccCChHHHHHHHH-----hCCCccc
Confidence            6999999999999999999987766787765 53211  111111110    0111111223344333     3799999


Q ss_pred             EccCch------------------hHHHHHHHHHHcCCcEEEe
Q 031341          112 DFTDAS------------------TVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       112 DfT~p~------------------~~~~~~~~al~~g~~vVig  136 (161)
                      .++...                  +....+..+.+.++..+.-
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~  115 (342)
T d2blla1          73 PLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFP  115 (342)
T ss_dssp             ECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccccccccccccCCcccccccccccccccccccccccccccc
Confidence            866321                  1234557788888877753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.29  E-value=0.00025  Score=51.48  Aligned_cols=88  Identities=19%  Similarity=0.230  Sum_probs=57.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEE
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      ..-||.|+|+ |.||+.+++.+.. .+..-+-++.++.  .++.+++.   +++  +.-++++.+.+.      ++|+||
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~-~g~~~i~v~nRt~--~ka~~l~~---~~~~~~~~~~~~~~~l~------~~Divi   89 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVD-RGVRAVLVANRTY--ERAVELAR---DLGGEAVRFDELVDHLA------RSDVVV   89 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHH-HCCSEEEEECSSH--HHHHHHHH---HHTCEECCGGGHHHHHH------TCSEEE
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHh-cCCcEEEEEcCcH--HHHHHHHH---hhhcccccchhHHHHhc------cCCEEE
Confidence            3468999995 9999999999985 4676666777652  12222221   222  233677887775      799999


Q ss_pred             EccC-ch--hHHHHHHHHHHc---CCcEE
Q 031341          112 DFTD-AS--TVYDNVKQATAF---GMRSV  134 (161)
Q Consensus       112 DfT~-p~--~~~~~~~~al~~---g~~vV  134 (161)
                      -+|. |.  ...++++..++.   ++|++
T Consensus        90 ~atss~~~ii~~~~i~~~~~~r~~~~~~~  118 (159)
T d1gpja2          90 SATAAPHPVIHVDDVREALRKRDRRSPIL  118 (159)
T ss_dssp             ECCSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             EecCCCCccccHhhhHHHHHhcccCCCeE
Confidence            7763 33  336777766643   45644

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.28  E-value=0.00014  Score=55.00  Aligned_cols=59  Identities=25%  Similarity=0.406  Sum_probs=42.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |||.|.|++|.+|+.+++.+. ..|.+++++ ++..  .|            +.=..++++++..    .++|+||.+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~-~~g~~Vi~~-~r~~--~D------------~~d~~~~~~~l~~----~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLK-GKNVEVIPT-DVQD--LD------------ITNVLAVNKFFNE----KKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHT-TSSEEEEEE-CTTT--CC------------TTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEEe-echh--cc------------CCCHHHHHHHHHH----cCCCEEEeec
Confidence            899999999999999999986 678998765 3321  11            1112345666653    5789999876

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.26  E-value=0.00031  Score=56.20  Aligned_cols=74  Identities=18%  Similarity=0.303  Sum_probs=45.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-C------CHHHHHhcccccCCcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S------DLTMVLGSISQSKARA  108 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~------dl~~~l~~~~~~~~~D  108 (161)
                      |||.|.|++|.+|+.+++.|++ .+.+++.++|+.........+..+....++.++ .      ++++++..    .++|
T Consensus         1 MkILItG~tGfIGs~l~~~L~~-~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~----~~~d   75 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIK-NTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQ----YQPD   75 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-HCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH----HCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHh----CCCC
Confidence            6999999999999999999984 467778888843211111111111112233332 2      23444442    4799


Q ss_pred             EEEEcc
Q 031341          109 VVIDFT  114 (161)
Q Consensus       109 VVIDfT  114 (161)
                      +||.++
T Consensus        76 ~VihlA   81 (361)
T d1kewa_          76 AVMHLA   81 (361)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            999986

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.0011  Score=48.02  Aligned_cols=101  Identities=14%  Similarity=0.059  Sum_probs=67.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhh-------------------hcCCCCCCeeee
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMV-------------------CDMEQPLEIPVM   91 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g---~~~~~~-------------------~g~~~~~~i~v~   91 (161)
                      |-||.|.|+||.+|+..++.+.++| .++++++..+....   +.+.++                   +.. ...++.++
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~-~~~~~~~~   79 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQ-QGSRTEVL   79 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHH-TTCCCEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhh-hccccccc
Confidence            4579999999999999999999886 69999999853110   000010                   000 12345555


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ...+.+.+ ++...++|.|+-.-.-.+..+-...++++|+.+-+..
T Consensus        80 ~g~~~l~~-~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLAN  124 (151)
T d1q0qa2          80 SGQQAACD-MAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLAN  124 (151)
T ss_dssp             ESHHHHHH-HHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEECC
T ss_pred             cChHHHHH-HhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEEc
Confidence            44333321 1123679999966566677888899999999988854

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00093  Score=43.74  Aligned_cols=84  Identities=15%  Similarity=0.080  Sum_probs=49.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCH-HHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl-~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      ||+|+| .|+.|+.+++.+.+. +.++. ++|.... .+..+.+.   ......+... ++.+.      +.|.|| .|+
T Consensus         7 ~v~ViG-lG~sG~s~a~~L~~~-g~~v~-~~D~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~d~vi-~SP   72 (93)
T d2jfga1           7 NVVIIG-LGLTGLSCVDFFLAR-GVTPR-VMDTRMT-PPGLDKLP---EAVERHTGSLNDEWLM------AADLIV-ASP   72 (93)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHT-TCCCE-EEESSSS-CTTGGGSC---TTSCEEESBCCHHHHH------HCSEEE-ECT
T ss_pred             EEEEEe-ECHHHHHHHHHHHHC-CCEEE-EeeCCcC-chhHHHHh---hccceeecccchhhhc------cCCEEE-ECC
Confidence            799999 599999999988744 77765 5563221 11111111   1122223332 33443      689888 442


Q ss_pred             -chhHHHHHHHHHHcCCcEE
Q 031341          116 -ASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       116 -p~~~~~~~~~al~~g~~vV  134 (161)
                       -....+.+..|.++|+++|
T Consensus        73 Gi~~~~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          73 GIALAHPSLSAAADAGIEIV   92 (93)
T ss_dssp             TSCTTSHHHHHHHHTTCEEE
T ss_pred             CCCCCCHHHHHHHHcCCCeE
Confidence             1222467788889999964

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.20  E-value=0.0012  Score=52.03  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=29.0

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .+..|||.|.|++|.+|+.+++.|.+ .+.+++++-
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~-~g~~V~~~d   46 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKH-EGHYVIASD   46 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEe
Confidence            34559999999999999999999974 678888643

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.18  E-value=0.00038  Score=51.59  Aligned_cols=83  Identities=17%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             cccccccccccceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 031341           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (161)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v   90 (161)
                      |+++..++++.++|-.....+.-.-.+|+|+| +|++|+.+++.+. .=++++. ++|+...            +.....
T Consensus        18 ~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG-~G~IG~~va~~l~-~~g~~v~-~~d~~~~------------~~~~~~   82 (181)
T d1qp8a1          18 RIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLG-LGEIGTRVGKILA-ALGAQVR-GFSRTPK------------EGPWRF   82 (181)
T ss_dssp             THHHHHHHHHTTCCCCCSCCCCCTTCEEEEES-CSTHHHHHHHHHH-HTTCEEE-EECSSCC------------CSSSCC
T ss_pred             CHHHHHHHHHcCCCCCCCCCCcccCceEEEec-cccccccceeeee-ccccccc-ccccccc------------ccceee
Confidence            45555667776664211111112236899999 6999999999876 5578866 4565321            112234


Q ss_pred             eCCHHHHHhcccccCCccEEEEcc
Q 031341           91 MSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++++++++.      ..|+|+-..
T Consensus        83 ~~~l~ell~------~sDiv~~~~  100 (181)
T d1qp8a1          83 TNSLEEALR------EARAAVCAL  100 (181)
T ss_dssp             BSCSHHHHT------TCSEEEECC
T ss_pred             eechhhhhh------ccchhhccc
Confidence            578999885      789888654

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.0017  Score=50.38  Aligned_cols=119  Identities=17%  Similarity=0.176  Sum_probs=77.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh-----c-C----------------CcEEEEEEe--cCCCCcchhhhhcCC------
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTK-----A-R----------------GMEVAGAID--SHSVGEDIGMVCDME------   83 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~-----~-~----------------~~eLvavvd--~~~~g~~~~~~~g~~------   83 (161)
                      ++|||+|+|. |+-.+.+++-+..     . .                |+|+|+..|  ..+.|+++.+..-..      
T Consensus         1 ~kIrVaIvGv-GNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafDVD~~KVGkdlseAi~a~pN~t~~   79 (243)
T d1gr0a1           1 TEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIK   79 (243)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCC
T ss_pred             CceEEEEEcc-hHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEecCccccCCcHHHHHhcCCCCcee
Confidence            3699999995 9999999988851     1 1                449999999  345788776653110      


Q ss_pred             ----CCCCeeee-----------------------CCHHHHHhcccccCCccEEEEccC---chhHHHHHHHHHHcCCcE
Q 031341           84 ----QPLEIPVM-----------------------SDLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRS  133 (161)
Q Consensus        84 ----~~~~i~v~-----------------------~dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~g~~v  133 (161)
                          .+.|+.+.                       .|+-+.|.    +.++||+|.+-+   -++..-++..|+++|+..
T Consensus        80 ~~d~p~~gv~V~~G~~LDg~~~~~~~~~~~~~~~~~dvv~~Lk----~~~~dVlvnylPvGse~A~~~YA~~al~Ag~aF  155 (243)
T d1gr0a1          80 IADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALK----EAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAF  155 (243)
T ss_dssp             CSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHH----HTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEE
T ss_pred             eCCCCCCCCEEeccCCccccchhhhcccCCCCccHHHHHHHHH----hcCCCEEEEecCCCcHHHHHHHHHHHHHcCceE
Confidence                01122211                       12334444    479999997763   245567899999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHhhhcCee
Q 031341          134 VVYVPHIQLETVSALSAFCDKASMV  158 (161)
Q Consensus       134 Vigttg~~~e~~~~L~~~A~~~~Vv  158 (161)
                      |-..|.|-..+ .++.+..+++++.
T Consensus       156 VN~iP~fIAsd-p~w~~kF~e~glp  179 (243)
T d1gr0a1         156 VNALPVFIASD-PVWAKKFTDARVP  179 (243)
T ss_dssp             EECSSCCSTTS-HHHHHHHHHHTCE
T ss_pred             EecccccccCC-HHHHHHHHHcCCc
Confidence            99888763322 2355555555443

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0011  Score=51.91  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=27.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      |||.|+|++|.+|+.+++.|.+ .+.+++++.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~-~g~~V~~~d   31 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEE
Confidence            7999999999999999999985 479988754

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0019  Score=48.19  Aligned_cols=93  Identities=17%  Similarity=0.081  Sum_probs=54.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .||.|.|+||.+|+.+++.+.+...+ ++.++..+... .+.....    .....+  +.+++++...+   .++|+++.
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~-~~~~~~~----~i~~~~~D~~~~~~~~~~~---~~~d~vi~   86 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT-FDEEAYK----NVNQEVVDFEKLDDYASAF---QGHDVGFC   86 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC-CCSGGGG----GCEEEECCGGGGGGGGGGG---SSCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh-hcccccc----eeeeeeecccccccccccc---cccccccc
Confidence            58999999999999999999987765 77766654321 1111110    111111  22333332221   47899986


Q ss_pred             ccCc-------h--------hHHHHHHHHHHcCCcEEEe
Q 031341          113 FTDA-------S--------TVYDNVKQATAFGMRSVVY  136 (161)
Q Consensus       113 fT~p-------~--------~~~~~~~~al~~g~~vVig  136 (161)
                      +...       .        .....++.|.+.|+..++-
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~  125 (232)
T d2bkaa1          87 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL  125 (232)
T ss_dssp             CCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccccccccchhhhhhhcccccceeeecccccCcccccc
Confidence            5421       0        2234667888999885543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0013  Score=47.11  Aligned_cols=70  Identities=13%  Similarity=0.174  Sum_probs=41.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +|.|+|+ |.+|...++.+. .-+.+.++ +++.....+...-+|..   .+.-+.+.+.....   ...+|++||++.
T Consensus        33 ~VlI~Ga-G~vG~~a~qlak-~~Ga~~i~-~~~~~~~~~~a~~lGad---~~i~~~~~~~~~~~---~~~~D~vid~~g  102 (168)
T d1uufa2          33 KVGVVGI-GGLGHMGIKLAH-AMGAHVVA-FTTSEAKREAAKALGAD---EVVNSRNADEMAAH---LKSFDFILNTVA  102 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEEE-EESSGGGHHHHHHHTCS---EEEETTCHHHHHTT---TTCEEEEEECCS
T ss_pred             EEEEecc-chHHHHHHHHhh-cccccchh-hccchhHHHHHhccCCc---EEEECchhhHHHHh---cCCCceeeeeee
Confidence            6999996 999999887665 67999885 44322222332333321   12223333333221   246999999874

>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1419
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.0038  Score=49.18  Aligned_cols=125  Identities=15%  Similarity=0.215  Sum_probs=76.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhhcC----------
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVCDM----------   82 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~--------------------~~~~eLvavvd~--~~~g~~~~~~~g~----------   82 (161)
                      ||||+|+|. |..++.++.-+..                    .+|.+++|..|.  ...|++..+..-.          
T Consensus         2 mIrV~ivG~-GnvAStlv~Gl~~~k~g~~~~~G~p~~~~~~~~~~Dievvgg~DId~~kvgk~l~eai~~~~n~~~~~~~   80 (275)
T d1vjpa1           2 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   80 (275)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             ceEEEEeec-cHHHHHHHHHHHHHHcCCCCCcCcccccccCCCCCCcEEEEEecCCcchhHHHHHHHHHhchhhhhhhhc
Confidence            799999996 9999999877631                    225689999993  2345543322100          


Q ss_pred             --------C---------CCCCeeeeCCHHHHHhccc---ccCCccEEEEccC-----c-h------------------h
Q 031341           83 --------E---------QPLEIPVMSDLTMVLGSIS---QSKARAVVIDFTD-----A-S------------------T  118 (161)
Q Consensus        83 --------~---------~~~~i~v~~dl~~~l~~~~---~~~~~DVVIDfT~-----p-~------------------~  118 (161)
                              .         ...+.....+..+.++++.   ++.+.||+|+.++     | .                  +
T Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~v~~i~~di~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i~a  160 (275)
T d1vjpa1          81 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTA  160 (275)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCH
T ss_pred             ccCcccceecCccccccccccccccccchHHHHHHHHHHHHhcchhheeecccccccCCCCcHHHHHHHhhccCccccCh
Confidence                    0         0000111122222222111   2356789998532     1 1                  2


Q ss_pred             HHHHHHHHH-----HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341          119 VYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (161)
Q Consensus       119 ~~~~~~~al-----~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (161)
                      ..-++.+|+     +.|++.|-++|-+..+ ...+.+++++.++...|
T Consensus       161 S~~YA~AAL~~~~~~aG~~fVN~~P~~ia~-~Pal~ela~~~gvPi~G  207 (275)
T d1vjpa1         161 TQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFG  207 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEEC
T ss_pred             HHHHHHHHHHhhhccCCceeEeccCccccC-CHHHHHHHHHcCCcEEc
Confidence            234556666     8999999999976543 46799999999998877

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.02  E-value=0.00052  Score=51.75  Aligned_cols=62  Identities=6%  Similarity=0.112  Sum_probs=38.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |||.|.|++|.+|+.+++.|.+. + +++++..+...      +     ..++.-...+++++..    .++|+||.++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~-g-~~v~~~~~~~~------~-----~~Dl~~~~~~~~~i~~----~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPV-G-NLIALDVHSKE------F-----CGDFSNPKGVAETVRK----LRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTT-S-EEEEECTTCSS------S-----CCCTTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-C-CEEEEECCCcc------c-----cCcCCCHHHHHHHHHH----cCCCEEEEec
Confidence            79999999999999999988643 3 44543332210      0     1111112345555653    4789999975

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0025  Score=43.55  Aligned_cols=97  Identities=18%  Similarity=0.172  Sum_probs=54.0

Q ss_pred             eCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCc
Q 031341           28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        28 ~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      ++|......||+|+| .|..||.++....+. |+++. ++|+... .+...++.   ..=+--|+|.+.+..- .+...+
T Consensus         4 ~~~~~~~~~kigIlG-gGQL~rMla~aA~~l-G~~v~-v~d~~~~-~PA~~va~---~~i~~~~~d~~~l~~~-~~~~~~   75 (111)
T d1kjqa2           4 GTALRPAATRVMLLG-SGELGKEVAIECQRL-GVEVI-AVDRYAD-APAMHVAH---RSHVINMLDGDALRRV-VELEKP   75 (111)
T ss_dssp             CCTTSTTCCEEEEES-CSHHHHHHHHHHHTT-TCEEE-EEESSTT-CGGGGGSS---EEEECCTTCHHHHHHH-HHHHCC
T ss_pred             CCCCCCCCCEEEEEe-CCHHHHHHHHHHHHC-CCEEE-EEcCCCC-CchhhcCC---eEEECCCCCHHHHHHH-HHhhCC
Confidence            344444557999999 599999999987644 88874 6775432 23333321   1111124666654221 001357


Q ss_pred             cEEEEccCchhHHHHHHHHHHcCCcE
Q 031341          108 AVVIDFTDASTVYDNVKQATAFGMRS  133 (161)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~g~~v  133 (161)
                      |+|. |-.-+.-.+.+++..+.|++|
T Consensus        76 DviT-~E~EnI~~~~L~~le~~g~~v  100 (111)
T d1kjqa2          76 HYIV-PEIEAIATDMLIQLEEEGLNV  100 (111)
T ss_dssp             SEEE-ECSSCSCHHHHHHHHHTTCEE
T ss_pred             ceEE-EEecCcCHHHHHHHHHCCCeE
Confidence            8765 443333344555555677764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00079  Score=48.32  Aligned_cols=99  Identities=17%  Similarity=0.090  Sum_probs=54.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhccc--ccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS--QSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~--~~~~~DVVIDfT  114 (161)
                      +|+|+|+ |.+|...+..+. .-+.+-+-++|+...-.+...-.|.. ..-.+-.++..+....+.  ....+|++||++
T Consensus        29 ~VlI~G~-G~iG~~~~~~a~-~~G~~~Vi~~d~~~~rl~~a~~~Ga~-~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          29 KVLVCGA-GPIGMVTLLVAK-AMGAAQVVVTDLSATRLSKAKEIGAD-LVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHTTCS-EEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             EEEEECC-CccHHHHHHHHH-HcCCceEEeccCCHHHHHHHHHhCCc-ccccccccccccccccccccCCCCceEEEecc
Confidence            6999996 999998887765 56775455666432111222222221 000011234443322110  124689999999


Q ss_pred             CchhHHHHHHHHHHcCCcE-EEeCC
Q 031341          115 DASTVYDNVKQATAFGMRS-VVYVP  138 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~v-Vigtt  138 (161)
                      ..+...+.+..+++.|=.+ ++|.+
T Consensus       106 G~~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         106 GAEASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CCchhHHHHHHHhcCCCEEEEEecC
Confidence            7666777666666665444 45554

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.96  E-value=0.0078  Score=42.69  Aligned_cols=71  Identities=15%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      .+||+|+|+ |++|..++-.+...+-..=+..+|...   .|  .|+...... .........|++++       .++|+
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~-~~~~~~~~~d~~~~-------~~adi   75 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAF-TAPKKIYSGEYSDC-------KDADL   75 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGG-SCCCEEEECCGGGG-------TTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccc-cCCceEeeccHHHh-------ccccE
Confidence            479999995 999999999888665443355888532   11  122211111 12234445677664       37999


Q ss_pred             EEEcc
Q 031341          110 VIDFT  114 (161)
Q Consensus       110 VIDfT  114 (161)
                      ||-++
T Consensus        76 vvita   80 (146)
T d1ez4a1          76 VVITA   80 (146)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            88654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.95  E-value=0.0027  Score=46.95  Aligned_cols=70  Identities=20%  Similarity=0.257  Sum_probs=44.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhhc-CCCCCCeeeeCCHHHHHhcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCD-MEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-------~g------~~~~~~~g-~~~~~~i~v~~dl~~~l~~~  101 (161)
                      |||+|+| .|++|..++..+. ..++++. ++|.+.       .|      ....+.+- .........++|+++++.  
T Consensus         1 MkI~ViG-lG~vGl~~a~~la-~~g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~--   75 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLS-ARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--   75 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred             CEEEEEC-CCHhHHHHHHHHH-hCCCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh--
Confidence            7999999 6999999998876 6788876 777421       01      01111110 001223566789999885  


Q ss_pred             cccCCccEEEEcc
Q 031341          102 SQSKARAVVIDFT  114 (161)
Q Consensus       102 ~~~~~~DVVIDfT  114 (161)
                          +.|+++-+.
T Consensus        76 ----~~d~i~i~V   84 (202)
T d1mv8a2          76 ----DSDVSFICV   84 (202)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----hCCEEEEec
Confidence                689887554

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0017  Score=50.49  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      =||.|.|++|.+|+.+++.|.+ .+.+++++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~-~g~~V~~~d   32 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMM-DGHEVTVVD   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEEe
Confidence            4899999999999999999975 689988764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.94  E-value=0.00027  Score=51.10  Aligned_cols=35  Identities=14%  Similarity=0.245  Sum_probs=27.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd   68 (161)
                      +|-+|.|.|++|.+|+.+++.|.+. ..+.+.+...
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R   37 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   37 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcC
Confidence            5779999999999999999999855 3455555543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00097  Score=49.48  Aligned_cols=99  Identities=15%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchh----hhh--cCCC------------CCCeeeeCC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIG----MVC--DMEQ------------PLEIPVMSD   93 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-----~~~~----~~~--g~~~------------~~~i~v~~d   93 (161)
                      ||+|+|+ |.||+.|+..+. ..|++++ ++|++...     ..+.    .+.  +...            -..+..++|
T Consensus         6 kvaViGa-G~mG~~iA~~~a-~~G~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           6 HVTVIGG-GLMGAGIAQVAA-ATGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             EEEEECc-CHHHHHHHHHHH-hCCCcEE-EEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence            8999995 999999998876 6789865 77753210     0000    000  0000            012456788


Q ss_pred             HHHHHhcccccCCccEEEEccCch-----hHHHHHHHHHHcCCcEEEeCCCCCHHH
Q 031341           94 LTMVLGSISQSKARAVVIDFTDAS-----TVYDNVKQATAFGMRSVVYVPHIQLET  144 (161)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~-----~~~~~~~~al~~g~~vVigttg~~~e~  144 (161)
                      +++++.      ++|.|+++-.-+     ..+..+......+..+.+-|.+++..+
T Consensus        83 ~~~a~~------~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~  132 (192)
T d1f0ya2          83 AASVVH------STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS  132 (192)
T ss_dssp             HHHHTT------SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH
T ss_pred             hHhhhc------ccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccch
Confidence            888774      789999875322     223333344444455445455666544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.85  E-value=0.0011  Score=50.92  Aligned_cols=30  Identities=17%  Similarity=0.245  Sum_probs=26.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      ||.|.|++|.+|+.+++.|.+ .+.+++++-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~-~g~~V~~id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS-QGIDLIVFD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CcCEEEEEE
Confidence            899999999999999999985 489988753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.71  E-value=0.0023  Score=43.99  Aligned_cols=105  Identities=13%  Similarity=0.239  Sum_probs=55.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---CCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~---~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |||.|+| .|++|+.+++.|. ..+.+++ ++|.+.  .....+..   ..++.+ +   .|.+-+...  .-.++|.++
T Consensus         1 M~IvI~G-~G~~G~~la~~L~-~~g~~v~-vid~d~--~~~~~~~~---~~~~~vi~Gd~~~~~~l~~~--~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAG-IGRVGYTLAKSLS-EKGHDIV-LIDIDK--DICKKASA---EIDALVINGDCTKIKTLEDA--GIEDADMYI   70 (132)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHHHH---HCSSEEEESCTTSHHHHHHT--TTTTCSEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCCcc-eecCCh--hhhhhhhh---hhhhhhccCcccchhhhhhc--Chhhhhhhc
Confidence            7999999 5999999999986 5677765 666432  11111111   123332 2   233222110  014688888


Q ss_pred             EccCchhH-HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHH
Q 031341          112 DFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       112 DfT~p~~~-~~~~~~al~~g~~vVigttg~~~e~~~~L~~~  151 (161)
                      -.|..+.. .-....+.+.|.+-++... -+++..+.+.++
T Consensus        71 ~~t~~d~~N~~~~~~~k~~~~~~iI~~~-~~~~~~~~l~~~  110 (132)
T d1lssa_          71 AVTGKEEVNLMSSLLAKSYGINKTIARI-SEIEYKDVFERL  110 (132)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCCCEEEEC-SSTTHHHHHHHT
T ss_pred             ccCCcHHHHHHHHHHHHHcCCceEEEEe-cCHHHHHHHHHC
Confidence            55544322 2333445566666555443 234455555544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.68  E-value=0.0013  Score=47.84  Aligned_cols=99  Identities=15%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .|+|+|+ |.+|...+..+. .-+...+.+.|+...-.+..+..|...-.+..-.+ ..++.... -....+|++||++-
T Consensus        31 ~VlV~G~-G~iGl~a~~~ak-~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~-~~~~G~d~vie~~G  107 (174)
T d1e3ia2          31 TCAVFGL-GCVGLSAIIGCK-IAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITE-LTAGGVDYSLDCAG  107 (174)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-HHTSCBSEEEESSC
T ss_pred             EEEEECC-ChHHHHHHHHHH-HhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhh-hhcCCCcEEEEecc
Confidence            6999995 999999888765 66887777888543222333333321000101111 12222110 01257999999997


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      .+...+.+..+++.  |.-+++|.+
T Consensus       108 ~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2         108 TAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             cchHHHHHHHHhhcCCeEEEecCCC
Confidence            66677777666544  677778765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.54  E-value=0.00074  Score=49.16  Aligned_cols=97  Identities=15%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +|+|+|+ |.+|...++.+. .-+.+-+.++|+...-.+..+-+|..   .+.-+  .++.+.+.++-....+|++||++
T Consensus        30 ~VlI~Ga-G~vGl~~~q~ak-~~Ga~~Vi~~d~~~~r~~~a~~lGa~---~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          30 SVVVIGI-GAVGLMGIAGAK-LRGAGRIIGVGSRPICVEAAKFYGAT---DILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CEEEECC-SHHHHHHHHHHH-TTTCSCEEEECCCHHHHHHHHHHTCS---EEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             EEEEEcC-Ccchhhhhhhhh-cccccccccccchhhhHHHHHhhCcc---ccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            5999996 999999888776 67776566777532112222323321   11111  33333332221224599999999


Q ss_pred             CchhHHHH-HHHHHHcCCcEEEeCC
Q 031341          115 DASTVYDN-VKQATAFGMRSVVYVP  138 (161)
Q Consensus       115 ~p~~~~~~-~~~al~~g~~vVigtt  138 (161)
                      ......+. +..+...|.-+++|.+
T Consensus       105 g~~~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2         105 GGSETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             SCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEeec
Confidence            64444444 4444455566666643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0039  Score=45.80  Aligned_cols=61  Identities=23%  Similarity=0.097  Sum_probs=41.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -.+|+|+| +|++|+.+++.+. .-++++.+ +|+... ..         .....-+.++++++.      ..|+++-..
T Consensus        44 ~~~vgiiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~~-~~---------~~~~~~~~~l~ell~------~sDii~i~~  104 (188)
T d1sc6a1          44 GKKLGIIG-YGHIGTQLGILAE-SLGMYVYF-YDIENK-LP---------LGNATQVQHLSDLLN------MSDVVSLHV  104 (188)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSCC-CC---------CTTCEECSCHHHHHH------HCSEEEECC
T ss_pred             ceEEEEee-cccchhhhhhhcc-cccceEee-cccccc-ch---------hhhhhhhhhHHHHHh------hccceeecc
Confidence            36999999 6999999999876 66888664 454221 00         112233468999996      589888543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.50  E-value=0.0041  Score=46.24  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=29.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+.||.|.|++|.+|+.+++.+.+ .|.++.++..+
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~-~G~~V~~l~R~   36 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLD-LGHPTFLLVRE   36 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEEECC
Confidence            357999999999999999999984 58998877753

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.50  E-value=0.0013  Score=48.37  Aligned_cols=74  Identities=11%  Similarity=0.066  Sum_probs=44.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC-----CcEEEEEEecCCC-----Ccchhhh--hcCCCCCCeeeeCCHHHHHhcc
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKAR-----GMEVAGAIDSHSV-----GEDIGMV--CDMEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~-----~~eLvavvd~~~~-----g~~~~~~--~g~~~~~~i~v~~dl~~~l~~~  101 (161)
                      +++||.|+||+|.+|..++-.|..-+     .....-.+|....     |... ++  +.......+.++++..+.+.  
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~m-dl~d~a~~~~~~~~~~~~~~~~~~--   99 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM-ELEDSLYPLLREVSIGIDPYEVFE--   99 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHTTTCTTEEEEEEESCHHHHTT--
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhh-hhcccccccccCccccccchhhcc--
Confidence            46899999999999999998876422     1112335553211     1111 11  11110124566788888885  


Q ss_pred             cccCCccEEEEcc
Q 031341          102 SQSKARAVVIDFT  114 (161)
Q Consensus       102 ~~~~~~DVVIDfT  114 (161)
                          +.|+||-..
T Consensus       100 ----~aDvVvi~a  108 (175)
T d7mdha1         100 ----DVDWALLIG  108 (175)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----CCceEEEee
Confidence                899988554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.48  E-value=0.0037  Score=41.48  Aligned_cols=91  Identities=8%  Similarity=0.047  Sum_probs=56.7

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        30 ~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      |+-..+-||=++|. |++|..-+..++...|+++. +.|... ......+.    +.|+.++...++..-     .++|+
T Consensus         3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~Vs-GSD~~~-~~~~~~L~----~~Gi~v~~g~~~~~i-----~~~d~   70 (96)
T d1p3da1           3 PEMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQIS-GSDIAD-GVVTQRLA----QAGAKIYIGHAEEHI-----EGASV   70 (96)
T ss_dssp             CCCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEE-EEESCC-SHHHHHHH----HTTCEEEESCCGGGG-----TTCSE
T ss_pred             ccchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEeCCC-ChhhhHHH----HCCCeEEECCccccC-----CCCCE
Confidence            34445679999996 99996554555568899866 568532 12223332    457777644333222     37898


Q ss_pred             EEEcc--CchhHHHHHHHHHHcCCcEE
Q 031341          110 VIDFT--DASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       110 VIDfT--~p~~~~~~~~~al~~g~~vV  134 (161)
                      || .|  .|+... .+.+|.++|+|++
T Consensus        71 vV-~S~AI~~~np-el~~A~~~gipii   95 (96)
T d1p3da1          71 VV-VSSAIKDDNP-ELVTSKQKRIPVI   95 (96)
T ss_dssp             EE-ECTTSCTTCH-HHHHHHHTTCCEE
T ss_pred             EE-ECCCcCCCCH-HHHHHHHcCCCEE
Confidence            88 55  344444 4677899999986

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.46  E-value=0.0032  Score=46.86  Aligned_cols=63  Identities=21%  Similarity=0.182  Sum_probs=44.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -+|||+| +|++|+.+++.+. .=|+++.+ +|+... .+...      ..++..++++++++.      ..|+|+...
T Consensus        50 ktvgIiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~~-~~~~~------~~~~~~~~~l~~ll~------~sD~i~~~~  112 (193)
T d1mx3a1          50 ETLGIIG-LGRVGQAVALRAK-AFGFNVLF-YDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTLHC  112 (193)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             ceEEEec-cccccccceeeee-ccccceee-ccCccc-ccchh------hhccccccchhhccc------cCCEEEEee
Confidence            5899999 6999999999887 55899774 564321 11111      224455679999996      689988544

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.0039  Score=40.98  Aligned_cols=86  Identities=16%  Similarity=0.106  Sum_probs=55.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc-
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (161)
                      |||=++|. |++|..-+..++...|+++. +.|...  .+..+.+   ++.|++++..-+...-     .++|+||--+ 
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~Vs-GSD~~~--~~~t~~L---~~~Gi~i~~gh~~~~i-----~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVY-GSNIEE--TERTAYL---RKLGIPIFVPHSADNW-----YDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEE-EECSSC--CHHHHHH---HHTTCCEESSCCTTSC-----CCCSEEEECTT
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEE-EEeCCC--ChhHHHH---HHCCCeEEeeeccccc-----CCCCEEEEecC
Confidence            78999996 88998666666678899754 678542  1222222   2567877643332211     3789888333 


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031341          115 DASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vV  134 (161)
                      .|+. .+.+.+|.+.|+|+.
T Consensus        70 I~~~-npel~~A~~~gIpv~   88 (89)
T d1j6ua1          70 VRDD-NPEIVRARMERVPIE   88 (89)
T ss_dssp             CCTT-CHHHHHHHHTTCCEE
T ss_pred             cCCC-CHHHHHHHHcCCCcc
Confidence            3444 455788999999985

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.44  E-value=0.0021  Score=44.91  Aligned_cols=33  Identities=15%  Similarity=0.397  Sum_probs=27.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      |||+|+|++|.||+.+++.+. ..|.+++-. +|+
T Consensus         1 Mki~vigGaG~iG~alA~~la-~~G~~V~l~-~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLA-TLGHEIVVG-SRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEE-ESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHH-HCCCEEEEE-ECC
Confidence            799999657999999999987 779998744 543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.42  E-value=0.027  Score=39.62  Aligned_cols=71  Identities=15%  Similarity=0.139  Sum_probs=41.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      |-||+|+|+ |++|+.++-.+...+=+ ||+ .+|...   .|  .|+..-........+...+++++ +      .+.|
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~Elv-L~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~------~daD   71 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-C------RDAD   71 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-G------TTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EEEeccccchhHHHHHHhccccCCCceeecCCCHHH-h------hCCc
Confidence            468999996 99999999888755444 555 788432   11  12222111111223333567765 3      3789


Q ss_pred             EEEEcc
Q 031341          109 VVIDFT  114 (161)
Q Consensus       109 VVIDfT  114 (161)
                      +||-.+
T Consensus        72 vVVita   77 (143)
T d1llda1          72 MVVITA   77 (143)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            988654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.41  E-value=0.0028  Score=47.33  Aligned_cols=80  Identities=13%  Similarity=0.038  Sum_probs=50.1

Q ss_pred             cccccccceeEEeeCCCCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee
Q 031341           15 ISQNVKAKRFISCSTNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM   91 (161)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~---~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~   91 (161)
                      ..++++...|  .|.+....   --+|+|+| +|++|+.+++.+. .=++++.+ +|+...  +..+.      .++ ..
T Consensus        22 ~~~~~~~~~~--~w~~~~g~el~gk~vgIiG-~G~IG~~va~~l~-~fg~~V~~-~d~~~~--~~~~~------~~~-~~   87 (197)
T d1j4aa1          22 MDEKVARHDL--RWAPTIGREVRDQVVGVVG-TGHIGQVFMQIME-GFGAKVIT-YDIFRN--PELEK------KGY-YV   87 (197)
T ss_dssp             HHHHHHTTBC--CCTTCCBCCGGGSEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSCC--HHHHH------TTC-BC
T ss_pred             HHHHHHhCCC--CcCCCcCccccCCeEEEec-ccccchhHHHhHh-hhcccccc-cCcccc--ccccc------cee-ee
Confidence            3444554444  34444322   26999999 6999999999986 56788764 564321  11111      112 24


Q ss_pred             CCHHHHHhcccccCCccEEEEcc
Q 031341           92 SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .++++++.      ..|+|+...
T Consensus        88 ~~l~~~l~------~sDii~~~~  104 (197)
T d1j4aa1          88 DSLDDLYK------QADVISLHV  104 (197)
T ss_dssp             SCHHHHHH------HCSEEEECS
T ss_pred             cccccccc------ccccccccC
Confidence            68999986      689888554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.39  E-value=0.0018  Score=46.20  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=51.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e--CCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M--SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~--~dl~~~l~~~~~~~~~DVVID  112 (161)
                      =+|.|+|++|.+|...+..+... +..-+.++++.....+..+..|..    ..+ +  .|+.+.+.+......+|+++|
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~~d~vid  103 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGAD----YVINASMQDPLAEIRRITESKGVDAVID  103 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcCCc----eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence            35999998899999998887755 543455566432212222223321    111 1  233332221111245899999


Q ss_pred             ccCchhHHHHHHHHHHcC-CcEEEe
Q 031341          113 FTDASTVYDNVKQATAFG-MRSVVY  136 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g-~~vVig  136 (161)
                      ++......+.+..+++.| .-+++|
T Consensus       104 ~~g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         104 LNNSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             SCCCHHHHTTGGGGEEEEEEEEECC
T ss_pred             ccccchHHHhhhhhcccCCEEEEec
Confidence            986655555544444444 333344

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0086  Score=45.15  Aligned_cols=93  Identities=20%  Similarity=0.228  Sum_probs=57.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhhh-----cCCCCCCeeeeC--
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMVC-----DMEQPLEIPVMS--   92 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~~-----g~~~~~~i~v~~--   92 (161)
                      -||.|+|+ |..|..++..|. .-|+.=..++|.+.                .|++..+.+     .+.....+..+.  
T Consensus        31 ~~VliiG~-GglGs~va~~La-~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~  108 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  108 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCEEEECC-CHHHHHHHHHHH-HcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhh
Confidence            69999995 999999999987 55776677888431                122211111     110011221111  


Q ss_pred             ----CHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341           93 ----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (161)
Q Consensus        93 ----dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig  136 (161)
                          +.+..+      ...|+++|++.+... ...-..|.++++|+|.|
T Consensus       109 ~~~~~~~~~~------~~~divid~~d~~~~~~~in~~~~~~~ip~i~g  151 (247)
T d1jw9b_         109 LDDAELAALI------AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSG  151 (247)
T ss_dssp             CCHHHHHHHH------HTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             hhhccccccc------cccceeeeccchhhhhhhHHHHHHHhCCCcccc
Confidence                122223      378999999865544 45557888999999976

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.34  E-value=0.021  Score=38.66  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=24.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |+.|+| +|++|+.+++.|. ..+.+++ ++|.
T Consensus         2 ~~iIiG-~G~~G~~la~~L~-~~g~~vv-vid~   31 (134)
T d2hmva1           2 QFAVIG-LGRFGGSIVKELH-RMGHEVL-AVDI   31 (134)
T ss_dssp             CEEEEC-CSHHHHHHHHHHH-HTTCCCE-EEES
T ss_pred             EEEEEC-CCHHHHHHHHHHH-HCCCeEE-EecC
Confidence            588999 5999999999987 5677766 5664

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.32  E-value=0.0076  Score=45.18  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+.||.|.|++|.+|+.+++.+.+ .|.++.++.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~-~G~~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECC
Confidence            467999999999999999999885 57999877663

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.23  E-value=0.0034  Score=44.70  Aligned_cols=76  Identities=13%  Similarity=0.208  Sum_probs=43.5

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcC-----CcEEEEEEecCC-CC--cchh-h--hhcCCCCCCeeeeCCHHHHHhcc
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKAR-----GMEVAGAIDSHS-VG--EDIG-M--VCDMEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~-----~~eLvavvd~~~-~g--~~~~-~--~~g~~~~~~i~v~~dl~~~l~~~  101 (161)
                      +.|+||.|+||+|+.|+.++-.|....     ..-..-.+|... .+  +... +  .........+.+.++.++.+.  
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFK--   78 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTT--
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccC--
Confidence            468999999999999999998776321     111233555321 11  1110 0  011111123556678888875  


Q ss_pred             cccCCccEEEEcc
Q 031341          102 SQSKARAVVIDFT  114 (161)
Q Consensus       102 ~~~~~~DVVIDfT  114 (161)
                          +.|+||-.+
T Consensus        79 ----~~dvVVita   87 (154)
T d5mdha1          79 ----DLDVAILVG   87 (154)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----CceEEEEec
Confidence                899988544

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.01  Score=45.23  Aligned_cols=29  Identities=21%  Similarity=0.210  Sum_probs=24.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLv   64 (161)
                      +-||.|.|++|.+|+.+++.|.+. +.+.+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~-g~~vi   30 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQR-GDVEL   30 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-TTEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHC-cCEEE
Confidence            359999999999999999999854 45544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.17  E-value=0.0041  Score=44.95  Aligned_cols=96  Identities=15%  Similarity=0.115  Sum_probs=56.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CC--HHHHHhcccccCCccEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SD--LTMVLGSISQSKARAVVID  112 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~d--l~~~l~~~~~~~~~DVVID  112 (161)
                      +|.|+|+ |.+|...+..+. .-+.+-+.++|+.....+....+|..   .+..+  .|  .++..... .....|++||
T Consensus        30 ~VlV~Ga-GgvGl~a~~~ak-~~G~~~Vi~~d~~~~kl~~a~~lGa~---~~i~~~~~d~~~~~~~~~~-~~~G~d~vid  103 (174)
T d1p0fa2          30 TCAVFGL-GGVGFSAIVGCK-AAGASRIIGVGTHKDKFPKAIELGAT---ECLNPKDYDKPIYEVICEK-TNGGVDYAVE  103 (174)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HHTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHH-TTSCBSEEEE
T ss_pred             EEEEECC-CchhHHHHHHHH-HcCCceeeccCChHHHHHHHHHcCCc---EEEcCCCchhHHHHHHHHh-cCCCCcEEEE
Confidence            5999996 999999988776 55565566777543222333333321   11111  12  33333210 1246999999


Q ss_pred             ccCchhHHHHHHHHH-H-cCCcEEEeCC
Q 031341          113 FTDASTVYDNVKQAT-A-FGMRSVVYVP  138 (161)
Q Consensus       113 fT~p~~~~~~~~~al-~-~g~~vVigtt  138 (161)
                      ++......+....++ . .|+-+++|.+
T Consensus       104 ~~g~~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2         104 CAGRIETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             CSCCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             cCCCchHHHHHHHHHHHhcCceEEEEEe
Confidence            997766666555554 4 3677777754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.15  E-value=0.0059  Score=43.30  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ||+|+||+|++|+.++-.+...+-+.=...+|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            8999998899999999988866665656678853

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.14  E-value=0.0077  Score=43.01  Aligned_cols=73  Identities=21%  Similarity=0.148  Sum_probs=45.6

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhh---hhcCCCCCCeeeeCCHHHHHhcccc
Q 031341           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGM---VCDMEQPLEIPVMSDLTMVLGSISQ  103 (161)
Q Consensus        32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~---g--~~~~~---~~g~~~~~~i~v~~dl~~~l~~~~~  103 (161)
                      -+++.||+|+|+ |+.|+.++-.+...+=.||+ ++|....   |  .|...   +.+.  ...+...++.++.+.    
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~~--~~~~~~~~~~~~~~~----   75 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDT--NVSVRAEYSYEAALT----   75 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTTC--CCCEEEECSHHHHHT----
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEE-EEEeccccchhHHHHHhhhccccCC--eeEEeccCchhhhhc----
Confidence            345689999996 99999988777765545865 8884321   1  12211   1111  223344567777774    


Q ss_pred             cCCccEEEEcc
Q 031341          104 SKARAVVIDFT  114 (161)
Q Consensus       104 ~~~~DVVIDfT  114 (161)
                        +.|+||...
T Consensus        76 --~adiVvita   84 (154)
T d1pzga1          76 --GADCVIVTA   84 (154)
T ss_dssp             --TCSEEEECC
T ss_pred             --CCCeEEEec
Confidence              799988543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.013  Score=41.75  Aligned_cols=96  Identities=18%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +|.|+|++|.+|...++.+ +.-++++++.++++. ..+.....|..   .+.-+  .|+.+.+.+.-....+|+++|++
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a-~~~G~~vi~~~~~~~-~~~~~~~~Ga~---~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~  105 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEE-GQKIVLQNGAH---EVFNHREVNYIDKIKKYVGEKGIDIIIEML  105 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHH-HHHHHHHTTCS---EEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEEEEeccccccccccccc-cccCccccccccccc-ccccccccCcc---cccccccccHHHHhhhhhccCCceEEeecc
Confidence            6999999999999988866 577899988887431 11222222221   12112  23433322111135699999988


Q ss_pred             CchhHHHHHHHHHHc-CCcEEEeCC
Q 031341          115 DASTVYDNVKQATAF-GMRSVVYVP  138 (161)
Q Consensus       115 ~p~~~~~~~~~al~~-g~~vVigtt  138 (161)
                      ... ..+....+++. |.-+.+|..
T Consensus       106 g~~-~~~~~~~~l~~~G~iv~~G~~  129 (174)
T d1yb5a2         106 ANV-NLSKDLSLLSHGGRVIVVGSR  129 (174)
T ss_dssp             HHH-HHHHHHHHEEEEEEEEECCCC
T ss_pred             cHH-HHHHHHhccCCCCEEEEEecC
Confidence            654 44444444444 555556654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.11  E-value=0.0056  Score=43.71  Aligned_cols=94  Identities=15%  Similarity=0.108  Sum_probs=50.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .|.|+|+ |.+|...+..+. .-+...+.++++.....+...-.|..   .+..+  ++.++.++. .....+|++||++
T Consensus        35 ~vli~Ga-G~vG~~~~~~a~-~~g~~~vv~~~~~~~k~~~~~~~ga~---~~i~~~~~~~~~~~~~-~~~~g~d~vid~~  108 (172)
T d1h2ba2          35 YVAIVGV-GGLGHIAVQLLK-VMTPATVIALDVKEEKLKLAERLGAD---HVVDARRDPVKQVMEL-TRGRGVNVAMDFV  108 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HHCCCEEEEEESSHHHHHHHHHTTCS---EEEETTSCHHHHHHHH-TTTCCEEEEEESS
T ss_pred             EEEEeCC-ChHHHHHHHHHH-hhcCcccccccchhHHHHHHhhcccc---eeecCcccHHHHHHHh-hCCCCceEEEEec
Confidence            5899995 999999888776 44555555667532111222222211   11111  223333321 1124699999999


Q ss_pred             CchhHHHHHHHHHHcC-CcEEEe
Q 031341          115 DASTVYDNVKQATAFG-MRSVVY  136 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g-~~vVig  136 (161)
                      ......+.+..+++.+ .-+++|
T Consensus       109 g~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         109 GSQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             CCHHHHHHGGGGEEEEEEEEECC
T ss_pred             CcchHHHHHHHHHhCCCEEEEEe
Confidence            7665555555444444 444444

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.10  E-value=0.004  Score=45.11  Aligned_cols=99  Identities=13%  Similarity=0.141  Sum_probs=56.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC-HHHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d-l~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .|+|+|+ |.+|...+..+. ..+..-+-++|......+...-.|...-.+..=.++ .++.... -....+|++||++.
T Consensus        32 tVlI~G~-GgvGl~ai~~ak-~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~-~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          32 TCVVFGL-GGVGLSVIMGCK-SAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSE-MTGNNVGYTFEVIG  108 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHH-HHTSCCCEEEECSC
T ss_pred             EEEEECC-CchhHHHHHHHH-HcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHH-hccccceEEEEeCC
Confidence            3899995 999999998876 666554556775433233444343320000000111 2222210 01257999999998


Q ss_pred             chhHHHHHHHHH-Hc-CCcEEEeCC
Q 031341          116 ASTVYDNVKQAT-AF-GMRSVVYVP  138 (161)
Q Consensus       116 p~~~~~~~~~al-~~-g~~vVigtt  138 (161)
                      .....+.....+ +. |+-+++|.+
T Consensus       109 ~~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2         109 HLETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             CHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             chHHHHHHHHHhhcCCeEEEEEEcc
Confidence            777766655444 33 677777765

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.08  E-value=0.011  Score=42.77  Aligned_cols=88  Identities=14%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -||.|.|+||.+|+.+++.+.+.+.. ++.....+...  +..       ... ....|+.+....+  ...+|+|+.+.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~--~~~-------~~~-~~~~d~~~~~~~~--~~~~d~vi~~~   70 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA--EHP-------RLD-NPVGPLAELLPQL--DGSIDTAFCCL   70 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC--CCT-------TEE-CCBSCHHHHGGGC--CSCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh--hcc-------ccc-ccccchhhhhhcc--ccchheeeeee
Confidence            48999999999999999999988775 44443332211  000       111 1234555554432  24679988753


Q ss_pred             -Cc---------------hhHHHHHHHHHHcCCcEEE
Q 031341          115 -DA---------------STVYDNVKQATAFGMRSVV  135 (161)
Q Consensus       115 -~p---------------~~~~~~~~~al~~g~~vVi  135 (161)
                       ..               ......+..|.++++.-++
T Consensus        71 g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          71 GTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeeccccccccccccchhhhhhhcccccccccccccc
Confidence             11               1123456677888866443

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.07  E-value=0.025  Score=43.87  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+-+|.|+|++|.+|+.+++.|.+ .+.++.+++.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~-~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHh-CCCeEEEEECC
Confidence            346799999999999999999985 58999988864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.05  E-value=0.007  Score=42.81  Aligned_cols=96  Identities=20%  Similarity=0.199  Sum_probs=51.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee----CCHHHHHhccc--ccCCccEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSIS--QSKARAVV  110 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~----~dl~~~l~~~~--~~~~~DVV  110 (161)
                      +|.|+| .|.+|...+..+ +..+.++++ +|+.....+...-.|..   ...++    .+.++....+.  ....+|++
T Consensus        29 ~vlV~G-~G~vG~~~~~~a-k~~Ga~vi~-v~~~~~r~~~a~~~ga~---~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          29 TVLVIG-AGPIGLVSVLAA-KAYGAFVVC-TARSPRRLEVAKNCGAD---VTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             EEEEEC-CSHHHHHHHHHH-HHTTCEEEE-EESCHHHHHHHHHTTCS---EEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             EEEEEc-ccccchhhHhhH-hhhcccccc-cchHHHHHHHHHHcCCc---EEEeccccccccchhhhhhhcccccCCcee
Confidence            699999 599999988766 467888775 45332111112112211   11111    23332221110  11468999


Q ss_pred             EEccCchhHHHHHHHHHH-cCCcEEEeCC
Q 031341          111 IDFTDASTVYDNVKQATA-FGMRSVVYVP  138 (161)
Q Consensus       111 IDfT~p~~~~~~~~~al~-~g~~vVigtt  138 (161)
                      ||++......+.+..+++ .|.-+++|.+
T Consensus       103 id~~g~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         103 IDCSGNEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             EECSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             eecCCChHHHHHHHHHHhcCCceEEEecC
Confidence            999976666665555544 4455555554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.017  Score=41.29  Aligned_cols=95  Identities=16%  Similarity=0.136  Sum_probs=49.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHH---HhcccccCCccEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMV---LGSISQSKARAVVI  111 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~---l~~~~~~~~~DVVI  111 (161)
                      +|.|+|+ |.+|...++.+. .-+.+-|-++|+...-.+...-+|..   .+.-+  .+..+.   +.++.....+|+||
T Consensus        31 ~VlV~Ga-G~iG~~~~~~ak-~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          31 TVVIQGA-GPLGLFGVVIAR-SLGAENVIVIAGSPNRLKLAEEIGAD---LTLNRRETSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTBSEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             EEEEECC-Cccchhheeccc-ccccccccccccccccccccccccce---EEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence            6899996 999998888765 66875444555432111222222211   11111  233222   11111123589999


Q ss_pred             EccCchhHHHHHHHHHHcC-CcEEEe
Q 031341          112 DFTDASTVYDNVKQATAFG-MRSVVY  136 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g-~~vVig  136 (161)
                      |++......+.+..+++.| .-+++|
T Consensus       106 d~vG~~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         106 EATGDSRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             ECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred             ecCCchhHHHHHHHHhcCCCEEEEEe
Confidence            9996555555555555544 334444

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=96.01  E-value=0.019  Score=44.59  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=26.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd   68 (161)
                      |+||.|.|++|.+|+.+++.|++. .++.+++ .|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~-~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV-LD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE-EE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE-Ee
Confidence            799999999999999999999765 3455554 45

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0012  Score=47.57  Aligned_cols=92  Identities=17%  Similarity=0.183  Sum_probs=51.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      +|.|.|++|.+|...++.+. .-+++++++.+++. ..+...-+|..   .+.-+.+..+....   ...+|+++|++-+
T Consensus        30 ~VlI~ga~G~vG~~aiqlak-~~G~~vi~~~~~~~-~~~~~~~lGa~---~~i~~~~~~~~~~~---~~g~D~v~d~~G~  101 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVAR-AMGLRVLAAASRPE-KLALPLALGAE---EAATYAEVPERAKA---WGGLDLVLEVRGK  101 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHH-HTTCEEEEEESSGG-GSHHHHHTTCS---EEEEGGGHHHHHHH---TTSEEEEEECSCT
T ss_pred             EEEEEeccccchhhhhhhhc-cccccccccccccc-ccccccccccc---eeeehhhhhhhhhc---cccccccccccch
Confidence            59999989999999988664 77899888776432 12222223321   12224443332222   3579999997653


Q ss_pred             hhHHHHHHHHHHcCCcEEEeC
Q 031341          117 STVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       117 ~~~~~~~~~al~~g~~vVigt  137 (161)
                       ...+.+......|.-+.+|.
T Consensus       102 -~~~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2         102 -EVEESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             -THHHHHTTEEEEEEEEEC--
T ss_pred             -hHHHHHHHHhcCCcEEEEeC
Confidence             33333333334445555554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.99  E-value=0.0041  Score=46.32  Aligned_cols=60  Identities=18%  Similarity=0.143  Sum_probs=40.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| +|++|+.+++.+. .=++++. ++|+.....   .      .... -+.++++++.      ..|+++-..
T Consensus        46 ktvgIiG-~G~IG~~va~~l~-~fg~~v~-~~d~~~~~~---~------~~~~-~~~~l~~l~~------~~D~v~~~~  105 (199)
T d1dxya1          46 QTVGVMG-TGHIGQVAIKLFK-GFGAKVI-AYDPYPMKG---D------HPDF-DYVSLEDLFK------QSDVIDLHV  105 (199)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCCSS---C------CTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             eeeeeee-ccccccccccccc-ccceeee-ccCCccchh---h------hcch-hHHHHHHHHH------hcccceeee
Confidence            6899999 6999999999886 5578876 566432110   0      1111 2468999886      589887544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0042  Score=44.30  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC---CHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~---dl~~~l~~~~~~~~~DVVID  112 (161)
                      =+|.|+|+ |.+|...++.+. ..++++++ +|++..-.+...-+|..   .+..+.   +..+...     ...|+++|
T Consensus        29 ~~vlI~Ga-G~vG~~a~q~ak-~~G~~vi~-~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~~-----~~~d~vi~   97 (168)
T d1piwa2          29 KKVGIVGL-GGIGSMGTLISK-AMGAETYV-ISRSSRKREDAMKMGAD---HYIATLEEGDWGEKYF-----DTFDLIVV   97 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCEEEE-EESSSTTHHHHHHHTCS---EEEEGGGTSCHHHHSC-----SCEEEEEE
T ss_pred             CEEEEECC-CCcchhHHHHhh-hccccccc-cccchhHHHHhhccCCc---EEeeccchHHHHHhhh-----cccceEEE
Confidence            46999996 999999887655 67899876 55432222333333321   111121   2233332     47899999


Q ss_pred             ccCc-h-hHHHHHHHHH-HcCCcEEEe----------------------CCCCCHHHHHHHHHHhhhcC
Q 031341          113 FTDA-S-TVYDNVKQAT-AFGMRSVVY----------------------VPHIQLETVSALSAFCDKAS  156 (161)
Q Consensus       113 fT~p-~-~~~~~~~~al-~~g~~vVig----------------------ttg~~~e~~~~L~~~A~~~~  156 (161)
                      ++.. . ...+....++ ..|.-+++|                      +...+.++.+++.++.++..
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~e~l~li~~gk  166 (168)
T d1piwa2          98 CASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKD  166 (168)
T ss_dssp             CCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred             EecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeCCHHHHHHHHHHHHhCC
Confidence            7532 1 1222222222 333444443                      33346778888888876654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.95  E-value=0.0076  Score=42.69  Aligned_cols=92  Identities=12%  Similarity=0.035  Sum_probs=56.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee----CCHHHHHhcccccCCccEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~----~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .|.|.|+ |.+|...+..+. .-+...+.+++++....+....+|..   .+..+    ++.++.+... ....+|++||
T Consensus        31 tVlI~Ga-GGvG~~aiq~ak-~~G~~~vi~~~~~~~k~~~ak~lGa~---~~i~~~~~~~~~~~~~~~~-~~~g~D~vid  104 (176)
T d2fzwa2          31 VCAVFGL-GGVGLAVIMGCK-VAGASRIIGVDINKDKFARAKEFGAT---ECINPQDFSKPIQEVLIEM-TDGGVDYSFE  104 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HHTCSEEEEECSCGGGHHHHHHHTCS---EEECGGGCSSCHHHHHHHH-TTSCBSEEEE
T ss_pred             EEEEecc-hhHHHHHHHHHH-HHhcCceEEEcccHHHHHHHHHhCCc---EEEeCCchhhHHHHHHHHH-cCCCCcEeee
Confidence            5999996 899998888766 55666666777543222333333331   11111    2333333211 1247999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE
Q 031341          113 FTDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g~~vV  134 (161)
                      ++-.....+.+..+++.|..++
T Consensus       105 ~~G~~~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         105 CIGNVKVMRAALEACHKGWGVS  126 (176)
T ss_dssp             CSCCHHHHHHHHHTBCTTTCEE
T ss_pred             cCCCHHHHHHHHHhhcCCceeE
Confidence            9988888888888888775544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.94  E-value=0.0028  Score=45.57  Aligned_cols=96  Identities=15%  Similarity=0.158  Sum_probs=54.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      =+|+|+|+ |.+|...+..+. .-+.+.+.+.|+...-.+..+-+|..   .+..+  .|+.+.+.++. ...+|++||+
T Consensus        30 ~~VlI~G~-G~iG~~~~~~ak-~~g~~~v~~~~~~~~k~~~a~~~Ga~---~~i~~~~~~~~~~i~~~t-~gg~D~vid~  103 (174)
T d1f8fa2          30 SSFVTWGA-GAVGLSALLAAK-VCGASIIIAVDIVESRLELAKQLGAT---HVINSKTQDPVAAIKEIT-DGGVNFALES  103 (174)
T ss_dssp             CEEEEESC-SHHHHHHHHHHH-HHTCSEEEEEESCHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHT-TSCEEEEEEC
T ss_pred             CEEEEeCC-CHHHhhhhhccc-ccccceeeeeccHHHHHHHHHHcCCe---EEEeCCCcCHHHHHHHHc-CCCCcEEEEc
Confidence            35999996 999999998775 55677777777532111222223321   11111  33444332221 1368999999


Q ss_pred             cCchhHHHHHHH-HHHcCCcEEEeC
Q 031341          114 TDASTVYDNVKQ-ATAFGMRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~-al~~g~~vVigt  137 (161)
                      +-.....+.+.. ....|.-+++|.
T Consensus       104 ~G~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         104 TGSPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             SCCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCcHHHHHHHHhcccCceEEEEEee
Confidence            976656555544 444556666664

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.037  Score=42.08  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=70.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-------CCCCeeeeCCHHHHHhccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSIS  102 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~-------~~~~i~v~~dl~~~l~~~~  102 (161)
                      ..||+|-| +|++|+.+++.+.+..+..++++.|+.     ..|-|..++..+.       ...+.. +-+.++.+.   
T Consensus        31 g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---  105 (234)
T d1b26a1          31 KATVAVQG-FGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLE---  105 (234)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHT---
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eeccccccc---
Confidence            47899999 699999999988766799999999853     3455544432111       011111 235677776   


Q ss_pred             ccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          103 QSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                        .++|+++=++...... +++.   +-..++|+|-.  .++++..+.|    .+.+|+|
T Consensus       106 --~~~DI~~PcA~~~~I~~~~a~---~l~~~~I~e~AN~p~t~~a~~~L----~~rgI~~  156 (234)
T d1b26a1         106 --LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEADEIL----SRRGILV  156 (234)
T ss_dssp             --SCCSEEEECSCTTCBCHHHHT---TCCCSEEECCSSSCBCHHHHHHH----HHTTCEE
T ss_pred             --cccceeecchhcccccHHHHH---HhhhceEeecCCCCCCHHHHHHH----HHCCeEE
Confidence              5899999777665553 4443   34577888864  3566544333    3455554

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.90  E-value=0.016  Score=44.39  Aligned_cols=110  Identities=15%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------------CCCeeeeCCHHHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------------PLEIPVMSDLTMVL   98 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~------------~~~i~v~~dl~~~l   98 (161)
                      .+|+|-| .|++|+.+++.+. ..|..++++.|..     ..|-++..+.....            ..+.....+.++++
T Consensus        32 ~~v~IqG-fGnVG~~~a~~L~-~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  109 (242)
T d1v9la1          32 KTVAIQG-MGNVGRWTAYWLE-KMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIF  109 (242)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGG
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhc
Confidence            6899999 6999999999987 5699999999952     33444433321110            12233344556777


Q ss_pred             hcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341           99 GSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      .     .++|+++-++...... +++.   +-+.++|++-.  .++++..+.|    ++.+|+|
T Consensus       110 ~-----~~~DIliPcA~~~~I~~~~a~---~i~ak~IvegAN~p~t~~a~~~L----~~rgI~~  161 (242)
T d1v9la1         110 K-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAERIL----YERGVVV  161 (242)
T ss_dssp             G-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHHHH----HTTTCEE
T ss_pred             c-----ccccEEeecchhccccHHHHH---hcccCEEEecCCCCCChhHHHHH----HhCCeEE
Confidence            6     5899999877655442 3433   34678888764  3566654443    3455554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.85  E-value=0.015  Score=41.38  Aligned_cols=94  Identities=10%  Similarity=0.020  Sum_probs=52.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee----CCHHHHHhcccccCCccEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~----~dl~~~l~~~~~~~~~DVVID  112 (161)
                      .|.|+|+ |.+|...+..+...-..+ |.++++...-.+.....|..   ....+    +.+++..... ....+|++||
T Consensus        31 tVlV~Ga-GG~G~~~~~~~~~~g~~~-Vi~~~~~~~k~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~-~~~G~D~vid  104 (176)
T d2jhfa2          31 TCAVFGL-GGVGLSVIMGCKAAGAAR-IIGVDINKDKFAKAKEVGAT---ECVNPQDYKKPIQEVLTEM-SNGGVDFSFE  104 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHH-TTSCBSEEEE
T ss_pred             EEEEECC-CCcHHHHHHHHHHcCCce-EEeecCcHHHHHHHHHhCCe---eEEecCCchhHHHHHHHHH-hcCCCCEEEe
Confidence            4999997 899999998887554444 44555432212222222221   11112    2233332211 1247999999


Q ss_pred             ccCchhHHHHHHHHHHcC-CcEEEe
Q 031341          113 FTDASTVYDNVKQATAFG-MRSVVY  136 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g-~~vVig  136 (161)
                      ++......+.+...+.++ -.++++
T Consensus       105 ~~G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2         105 VIGRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             cCCchhHHHHHHHHHhcCCcceEEe
Confidence            998777777666666664 343443

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.82  E-value=0.017  Score=44.19  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=69.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhc-------CCCCCCeeeeCCHHHHHhccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCD-------MEQPLEIPVMSDLTMVLGSIS  102 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g-------~~~~~~i~v~~dl~~~l~~~~  102 (161)
                      -.+|+|-| .|++|+.+++.+.+.-+..++++.|..     ..|.+..++..       +....+... -+.++++.   
T Consensus        32 g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~---  106 (239)
T d1gtma1          32 GKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLE---  106 (239)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHH---
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-eccccccc---
Confidence            37899999 699999999988777799999999953     23333332221       100112222 25678886   


Q ss_pred             ccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          103 QSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                        .++|+++-++...... +++.   +-+..+|++-.  .++++..+.|    .+.+|+|
T Consensus       107 --~~~DIl~PcA~~~~I~~~~a~---~i~ak~I~e~AN~p~t~ea~~~L----~~rgI~~  157 (239)
T d1gtma1         107 --LEVDVLAPAAIEEVITKKNAD---NIKAKIVAEVANGPVTPEADEIL----FEKGILQ  157 (239)
T ss_dssp             --SCCSEEEECSCSCCBCTTGGG---GCCCSEEECCSSSCBCHHHHHHH----HHTTCEE
T ss_pred             --ccccEEeeccccccccHHHHH---hccccEEEecCCCCCCHHHHHHH----HHCCCEE
Confidence              5899999877654442 3333   45778888864  3566543333    3455655

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.81  E-value=0.012  Score=43.95  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      .||+|.| +|++|+.+++.+. ..|.+++ ++|.+.  ..+....    ..+... -+.++++.     .++|+++=+..
T Consensus        28 k~v~IqG-~G~VG~~~A~~L~-~~Gakvv-v~d~d~--~~~~~~~----~~g~~~-~~~~~~~~-----~~~DI~iPcA~   92 (201)
T d1c1da1          28 LTVLVQG-LGAVGGSLASLAA-EAGAQLL-VADTDT--ERVAHAV----ALGHTA-VALEDVLS-----TPCDVFAPCAM   92 (201)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHH----HTTCEE-CCGGGGGG-----CCCSEEEECSC
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EecchH--HHHHHHH----hhcccc-cCcccccc-----ccceeeecccc
Confidence            6899999 6999999999887 5689987 556432  1111111    223332 35677776     58999996666


Q ss_pred             chhHH-HHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          116 ASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       116 p~~~~-~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      ..... +++.   +-+..+|+|-.  .++.+.   ..++-++.+|+|
T Consensus        93 ~~~I~~~~a~---~i~ak~i~e~AN~p~~~~~---~~~~L~~rgI~~  133 (201)
T d1c1da1          93 GGVITTEVAR---TLDCSVVAGAANNVIADEA---ASDILHARGILY  133 (201)
T ss_dssp             SCCBCHHHHH---HCCCSEECCSCTTCBCSHH---HHHHHHHTTCEE
T ss_pred             cccccHHHHh---hhhhheeeccCCCCcchhh---HHHHhcccceEE
Confidence            55443 3443   44678888764  345443   233444556655

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.80  E-value=0.0095  Score=43.64  Aligned_cols=65  Identities=15%  Similarity=0.101  Sum_probs=43.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -.+|+|+| +|++|+.+++.+. .=++++. ++|+.....+...      ..++....++++++.      ..|+|+-..
T Consensus        44 ~~~vgiiG-~G~IG~~va~~l~-~fg~~v~-~~d~~~~~~~~~~------~~~~~~~~~l~~~l~------~sD~v~~~~  108 (188)
T d2naca1          44 AMHVGTVA-AGRIGLAVLRRLA-PFDVHLH-YTDRHRLPESVEK------ELNLTWHATREDMYP------VCDVVTLNC  108 (188)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGTCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHGG------GCSEEEECS
T ss_pred             ccceeecc-ccccchhhhhhhh-ccCceEE-EEeeccccccccc------cccccccCCHHHHHH------hccchhhcc
Confidence            47999999 6999999999886 4567744 5554322122111      224455689999986      689887544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.72  E-value=0.15  Score=36.47  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |||+|+| .|++|-.++..+ . .+++++ ++|.
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a-~g~~V~-g~Di   30 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-S-LQNEVT-IVDI   30 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-T-TTSEEE-EECS
T ss_pred             CEEEEEC-CChhHHHHHHHH-H-CCCcEE-EEEC
Confidence            7999999 699999988654 3 599977 6784

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.012  Score=46.28  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=25.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |.|.|++|.+|+.+++.|.+. |.+++++..
T Consensus         4 vLITGatGfiGs~lv~~Ll~~-g~~V~~~~r   33 (357)
T d1db3a_           4 ALITGVTGQDGSYLAEFLLEK-GYEVHGIKR   33 (357)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             EEEeCCCcHHHHHHHHHHHHC-cCEEEEEEC
Confidence            458999999999999999854 899886654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.68  E-value=0.049  Score=36.10  Aligned_cols=88  Identities=13%  Similarity=0.018  Sum_probs=53.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -||.|+| .|+.|.+-++.+. ..+.++.- +++.. ..+...+..   ...+.. ...+++..-     ...++|+-.|
T Consensus        13 k~vlVvG-~G~va~~ka~~ll-~~ga~v~v-~~~~~-~~~~~~~~~---~~~i~~~~~~~~~~dl-----~~~~lv~~at   80 (113)
T d1pjqa1          13 RDCLIVG-GGDVAERKARLLL-EAGARLTV-NALTF-IPQFTVWAN---EGMLTLVEGPFDETLL-----DSCWLAIAAT   80 (113)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTBEEEE-EESSC-CHHHHHHHT---TTSCEEEESSCCGGGG-----TTCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCeEEE-EeccC-ChHHHHHHh---cCCceeeccCCCHHHh-----CCCcEEeecC
Confidence            4899999 5999999999988 45787664 44322 223333331   223322 222332221     3688888676


Q ss_pred             CchhH-HHHHHHHHHcCCcEEE
Q 031341          115 DASTV-YDNVKQATAFGMRSVV  135 (161)
Q Consensus       115 ~p~~~-~~~~~~al~~g~~vVi  135 (161)
                      ..... .+....|.+.|+++=+
T Consensus        81 ~d~~~n~~i~~~a~~~~ilVNv  102 (113)
T d1pjqa1          81 DDDTVNQRVSDAAESRRIFCNV  102 (113)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCEEEe
Confidence            54444 5677888999988754

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.66  E-value=0.0056  Score=48.43  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      |||.|.|++|.+|+.+++.|++..+.+++++
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~   33 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIV   33 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEE
Confidence            5999999999999999999998889998854

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.63  E-value=0.0081  Score=46.15  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ++.|.||+|.+|+.+++.|.+ .|.+++++..
T Consensus         3 ~~LVTGatGfiG~~lv~~Ll~-~g~~V~~~~r   33 (339)
T d1n7ha_           3 IALITGITGQDGSYLTEFLLG-KGYEVHGLIR   33 (339)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             EEEEeCCccHHHHHHHHHHHH-CcCEEEEEEC
Confidence            688999999999999999985 6999887776

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.59  E-value=0.014  Score=41.43  Aligned_cols=96  Identities=16%  Similarity=0.106  Sum_probs=54.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +|.|+|++|.+|...++.+ +.-+++++++++++.. .+.....|.   ..+..+  .|+.+.+.+.....++|+++|+.
T Consensus        28 ~VlI~ga~g~vG~~~iqla-~~~g~~vi~~~~~~~~-~~~l~~~Ga---~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~  102 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAK-REMLSRLGV---EYVGDSRSVDFADEILELTDGYGVDVVLNSL  102 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHH-HHHHHTTCC---SEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred             EEEEECCCCCcccccchhh-ccccccceeeeccccc-ccccccccc---cccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence            6999998999999998876 4678999988874311 111111121   112112  23434332222235799999988


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      ..+.....+......|.-+.+|.
T Consensus       103 g~~~~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         103 AGEAIQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             CTHHHHHHHHTEEEEEEEEECSC
T ss_pred             cchHHHHHHHHhcCCCEEEEEcc
Confidence            76544444443334444444554

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.018  Score=44.78  Aligned_cols=29  Identities=24%  Similarity=0.428  Sum_probs=25.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      |.|.|++|.+|+.+++.|++ .+.+++++-
T Consensus         4 ILVTGatGfIG~~lv~~Ll~-~g~~V~~~d   32 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIE-NGYDCVVAD   32 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             EEEeCCCcHHHHHHHHHHHH-CcCeEEEEE
Confidence            78999999999999999985 579988753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.54  E-value=0.017  Score=41.38  Aligned_cols=95  Identities=16%  Similarity=0.138  Sum_probs=55.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---CCHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~---~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      +|.|.|++|..|+..++.. +.-++++++++.++. ..+.....|.   ..+..+   +..+++++. .....+|+|+|+
T Consensus        32 ~VlV~ga~ggvG~~aiqla-k~~Ga~vi~~~~~~~-~~~~~~~~Ga---~~vi~~~~~~~~~~~~~~-~~~~Gvd~v~D~  105 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDE-KIAYLKQIGF---DAAFNYKTVNSLEEALKK-ASPDGYDCYFDN  105 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHH-HHHHHHHTTC---SEEEETTSCSCHHHHHHH-HCTTCEEEEEES
T ss_pred             EEEEEeCCCchhHHHHHHH-HccCCEEEEeCCCHH-HHHHHHhhhh---hhhcccccccHHHHHHHH-hhcCCCceeEEe
Confidence            4899999999999988865 477899998886431 1122222221   111111   223333221 113569999998


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      .-.+...+.+......|.-+++|.
T Consensus       106 vG~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         106 VGGEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             SCHHHHHHHGGGEEEEEEEEECCC
T ss_pred             cCchhhhhhhhhccCCCeEEeecc
Confidence            875544444444455566666664

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.53  E-value=0.049  Score=40.94  Aligned_cols=76  Identities=26%  Similarity=0.345  Sum_probs=48.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++ +.+++.  .++                  +++.++    .+.. +..|++.
T Consensus         7 ~~lITGas~GIG~aia~~l~-~~G~~V~-~~~r~~--~~l------------------~~~~~~----~~~~~~~~Dv~~   60 (242)
T d1ulsa_           7 AVLITGAAHGIGRATLELFA-KEGARLV-ACDIEE--GPL------------------REAAEA----VGAHPVVMDVAD   60 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHH------------------HHHHHT----TTCEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHH------------------HHHHHH----cCCeEEEEecCC
Confidence            47888999999999999987 6688866 455431  111                  111111    1111 4567888


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      ++...+.+..+.+.  ++.+++-..
T Consensus        61 ~~~v~~~~~~~~~~~g~iDilVnnA   85 (242)
T d1ulsa_          61 PASVERGFAEALAHLGRLDGVVHYA   85 (242)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEECC
Confidence            88877777666554  577777543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.44  E-value=0.037  Score=42.52  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=27.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      -||.|.|++|.+|+.+++.|. ..+.++.++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll-~~g~~V~~~~r   40 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQ-TMGATVKGYSL   40 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEEC
Confidence            689999999999999999998 55888775544

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.43  E-value=0.032  Score=43.06  Aligned_cols=113  Identities=12%  Similarity=0.140  Sum_probs=71.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC---------------CCCCeeeeCCHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME---------------QPLEIPVMSDLT   95 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~---------------~~~~i~v~~dl~   95 (161)
                      .||+|-| +|++|+..++.+. ..|..++++.|+.     ..|-|..++....               ...+.. +-+.+
T Consensus        37 ~~v~IQG-fGnVG~~~a~~L~-e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  113 (255)
T d1bgva1          37 KTVALAG-FGNVAWGAAKKLA-ELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQ-FFPGE  113 (255)
T ss_dssp             CEEEECC-SSHHHHHHHHHHH-HHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCE-EEETC
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCce-eechh
Confidence            5899999 6999999999987 5689999999942     3455443332110               000111 11234


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                      +.+.     .++|+++=++..... .+++......|+.+|++-.  .++++..+.   +.++.+|++
T Consensus       114 ~~~~-----~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~---ll~~~gI~v  172 (255)
T d1bgva1         114 KPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRF---LMQQPNMVV  172 (255)
T ss_dssp             CGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHH---HHHCTTCEE
T ss_pred             hccc-----ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHHHH---HHHhcCCEE
Confidence            4554     589999966555444 5788888888999999864  355654333   334455554

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.42  E-value=0.018  Score=40.21  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      |||+|+|+ |++|..++-.+...+-..=+..+|..
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccc
Confidence            79999996 99999999888866544334488853

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.017  Score=40.87  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~   70 (161)
                      |||+|+|++|++|+.++-.+.. .+-..=+..+|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            7999999889999999877653 3444445577853

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.39  E-value=0.056  Score=40.80  Aligned_cols=80  Identities=24%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++. .+++..  +..+.              .+++..+    ...+   +..|.
T Consensus        11 ~alITGas~GIG~aia~~la-~~Ga~V~i-~~r~~~--~~~~~--------------~~~~~~~----~g~~~~~~~~Dv   68 (260)
T d1h5qa_          11 TIIVTGGNRGIGLAFTRAVA-AAGANVAV-IYRSAA--DAVEV--------------TEKVGKE----FGVKTKAYQCDV   68 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTEEEEE-EESSCT--THHHH--------------HHHHHHH----HTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCHH--HHHHH--------------HHHHHHH----hCCceEEEEccC
Confidence            57888999999999999997 67898664 454321  11111              1111111    1222   45678


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      |.++...+.+..+.+.  ++.+++-..
T Consensus        69 ~~~~~v~~~~~~~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          69 SNTDIVTKTIQQIDADLGPISGLIANA   95 (260)
T ss_dssp             TCHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEecccc
Confidence            8888887777666654  577776554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.36  E-value=0.012  Score=43.11  Aligned_cols=62  Identities=21%  Similarity=0.182  Sum_probs=41.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+++|+| .|++|+.+++.+. .=++++. ++|+... .....      ..++. +.++++++.      .+|+|+...
T Consensus        45 k~vgiiG-~G~IG~~va~~~~-~fg~~v~-~~d~~~~-~~~~~------~~~~~-~~~l~ell~------~sDiv~~~~  106 (184)
T d1ygya1          45 KTVGVVG-LGRIGQLVAQRIA-AFGAYVV-AYDPYVS-PARAA------QLGIE-LLSLDDLLA------RADFISVHL  106 (184)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECTTSC-HHHHH------HHTCE-ECCHHHHHH------HCSEEEECC
T ss_pred             eeeeecc-ccchhHHHHHHhh-hccceEE-eecCCCC-hhHHh------hcCce-eccHHHHHh------hCCEEEEcC
Confidence            6899999 6999999999886 4568866 4564321 11111      11222 468999996      699988544

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.36  E-value=0.16  Score=38.64  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK   57 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~   57 (161)
                      |||.|.|++|.+|+.+++.|++
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~   22 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLA   22 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH
Confidence            6999999999999999999975

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.27  E-value=0.016  Score=40.73  Aligned_cols=92  Identities=16%  Similarity=0.100  Sum_probs=47.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +|.|+|+ |.+|...+..+. .-+.+++++ |+.....+...-.|..   .+..+  .+..+.+.+.  ....|.+|+++
T Consensus        30 ~VlV~Ga-G~vG~~~~~~ak-~~G~~Vi~~-~~~~~~~~~a~~~Ga~---~~i~~~~~~~~~~~~~~--~~g~~~~i~~~  101 (166)
T d1llua2          30 WVAISGI-GGLGHVAVQYAR-AMGLHVAAI-DIDDAKLELARKLGAS---LTVNARQEDPVEAIQRD--IGGAHGVLVTA  101 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEEEE-ESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHH--HSSEEEEEECC
T ss_pred             EEEEeec-cccHHHHHHHHH-HcCCcccee-cchhhHHHhhhccCcc---ccccccchhHHHHHHHh--hcCCccccccc
Confidence            6999996 999999888665 557887765 4322111222222221   11111  2333322210  13567777777


Q ss_pred             CchhHHHHHHHHHHcC-CcEEEe
Q 031341          115 DASTVYDNVKQATAFG-MRSVVY  136 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g-~~vVig  136 (161)
                      ......+.+..+++.+ +-+++|
T Consensus       102 ~~~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         102 VSNSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SCHHHHHHHHTTEEEEEEEEECC
T ss_pred             ccchHHHHHHHHhcCCcEEEEEE
Confidence            5555555554444443 444444

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.25  E-value=0.014  Score=43.04  Aligned_cols=64  Identities=16%  Similarity=0.158  Sum_probs=43.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .+|+|+| .|++|+.+++.+. .=++++. ++|+.....+...      ..+...+.++++++.      ..|+|+...
T Consensus        48 ~tvgIiG-~G~IG~~va~~l~-~fg~~v~-~~d~~~~~~~~~~------~~~~~~~~~l~~ll~------~sD~v~l~~  111 (191)
T d1gdha1          48 KTLGIYG-FGSIGQALAKRAQ-GFDMDID-YFDTHRASSSDEA------SYQATFHDSLDSLLS------VSQFFSLNA  111 (191)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             cceEEee-cccchHHHHHHHH-hhccccc-cccccccccchhh------cccccccCCHHHHHh------hCCeEEecC
Confidence            7899999 6999999999876 6678866 4564322111111      123344578999996      689988655

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.17  E-value=0.087  Score=39.42  Aligned_cols=38  Identities=29%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        29 ~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +||=.+ =++.|.|+++++|+.+++.+. ..|.+++....
T Consensus         2 ~psl~g-K~~lITGas~GIG~aia~~la-~~Ga~V~~~~r   39 (237)
T d1uzma1           2 KPPFVS-RSVLVTGGNRGIGLAIAQRLA-ADGHKVAVTHR   39 (237)
T ss_dssp             CCCCCC-CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CCCCCC-CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEEC
Confidence            444344 358999999999999999997 67888765443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.052  Score=40.99  Aligned_cols=81  Identities=11%  Similarity=0.142  Sum_probs=50.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++ +.+++.  .+..+.              .+++.++    .+.+   +..|.
T Consensus         7 ~~lITGas~GIG~aia~~la-~~Ga~V~-i~~r~~--~~~~~~--------------~~~l~~~----~g~~~~~~~~Dv   64 (251)
T d1vl8a_           7 VALVTGGSRGLGFGIAQGLA-EAGCSVV-VASRNL--EEASEA--------------AQKLTEK----YGVETMAFRCDV   64 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHHHHHH----HCCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHHHHHH----hCCcEEEEEccC
Confidence            47899999999999999997 6688865 455432  111111              1122111    1223   34578


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      |.++...+.+..+.+.  ++++++-..|
T Consensus        65 ~~~~~v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          65 SNYEEVKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888887777766654  6888876543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.16  E-value=0.013  Score=41.38  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=42.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeee-CCHHHHHhcccccCCcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARA  108 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~D  108 (161)
                      .-||+|+|+ |++|..++-.+...+-..=+..+|...   .|  .|+..-... ....+.+. .++++ +      .++|
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~-~~~~~~~~~~d~~~-l------~daD   76 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVF-APKPVDIWHGDYDD-C------RDAD   76 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTS-SSSCCEEEECCGGG-T------TTCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccc-cCCCeEEEECCHHH-h------ccce
Confidence            469999996 999999999888665443344888532   11  122221111 12344443 55544 4      3799


Q ss_pred             EEEEcc
Q 031341          109 VVIDFT  114 (161)
Q Consensus       109 VVIDfT  114 (161)
                      +||..+
T Consensus        77 vvvita   82 (148)
T d1ldna1          77 LVVICA   82 (148)
T ss_dssp             EEEECC
T ss_pred             eEEEec
Confidence            988544

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.09  E-value=0.23  Score=34.35  Aligned_cols=33  Identities=27%  Similarity=0.241  Sum_probs=25.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -||+|+|+ |++|..++-.+...+-..=+..+|.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~   34 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDV   34 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEec
Confidence            38999996 9999999988886655433558884

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.015  Score=42.33  Aligned_cols=100  Identities=9%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|+| +|++||.+++.+. --++++. ++|.+.. +.+...     -.+.. ..++++++.      ..|++|=.|-
T Consensus        25 k~v~V~G-yG~iG~g~A~~~r-g~G~~V~-v~e~dp~-~al~A~-----~dG~~-v~~~~~a~~------~adivvtaTG   88 (163)
T d1li4a1          25 KVAVVAG-YGDVGKGCAQALR-GFGARVI-ITEIDPI-NALQAA-----MEGYE-VTTMDEACQ------EGNIFVTTTG   88 (163)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCHH-HHHHHH-----HTTCE-ECCHHHHTT------TCSEEEECSS
T ss_pred             CEEEEec-cccccHHHHHHHH-hCCCeeE-eeecccc-hhHHhh-----cCceE-eeehhhhhh------hccEEEecCC
Confidence            4799999 8999999999886 5577754 6775421 111111     11333 347888875      7899885653


Q ss_pred             -chhH-HHHHHHHHHcCCcEEEeCCC-CCH-HHHHHHHHHhhh
Q 031341          116 -ASTV-YDNVKQATAFGMRSVVYVPH-IQL-ETVSALSAFCDK  154 (161)
Q Consensus       116 -p~~~-~~~~~~al~~g~~vVigttg-~~~-e~~~~L~~~A~~  154 (161)
                       ++.. .+++.   +.+-..|+...| ++. -+.+.|.+.+.+
T Consensus        89 n~~vI~~eh~~---~MKdgaIL~N~Ghfd~EId~~~L~~~~~~  128 (163)
T d1li4a1          89 CIDIILGRHFE---QMKDDAIVCNIGHFDVEIDVKWLNENAVE  128 (163)
T ss_dssp             CSCSBCHHHHT---TCCTTEEEEECSSSTTSBCHHHHHHHCSE
T ss_pred             CccchhHHHHH---hccCCeEEEEeccccceecHHHHhhccce
Confidence             3433 34443   344445566543 443 345667766543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.91  E-value=0.033  Score=39.25  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=49.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---CC-HHHHHhcccccCCccEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SD-LTMVLGSISQSKARAVVID  112 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~---~d-l~~~l~~~~~~~~~DVVID  112 (161)
                      +|.|+|+ |.+|-..+..+.. .+...+.++|+.....+....+|..   .+.-+   ++ .++.... .....+|+++|
T Consensus        31 ~VlI~G~-Gg~g~~~~~~~~~-~g~~~Vi~~~~~~~rl~~a~~~GAd---~~in~~~~~~~~~~~~~~-~~~~G~d~vid  104 (175)
T d1cdoa2          31 TCAVFGL-GAVGLAAVMGCHS-AGAKRIIAVDLNPDKFEKAKVFGAT---DFVNPNDHSEPISQVLSK-MTNGGVDFSLE  104 (175)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCC---EEECGGGCSSCHHHHHHH-HHTSCBSEEEE
T ss_pred             EEEEEec-CCccchHHHHHHH-HhhchheeecchHHHHHHHHHcCCc---EEEcCCCcchhHHHHHHh-hccCCcceeee
Confidence            5999996 9999988887764 4554455666543222323323321   11111   11 2332211 01247999999


Q ss_pred             ccCchhHHHHHHHHHHcC
Q 031341          113 FTDASTVYDNVKQATAFG  130 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~g  130 (161)
                      ++-.......+..++..|
T Consensus       105 ~~G~~~~~~~a~~~~~~g  122 (175)
T d1cdoa2         105 CVGNVGVMRNALESCLKG  122 (175)
T ss_dssp             CSCCHHHHHHHHHTBCTT
T ss_pred             ecCCHHHHHHHHHHhhCC
Confidence            998777777776665554

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.012  Score=43.81  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=28.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |||+++| ++..|..+++.+.+ .++++++|+.
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~~-~~~~i~~V~t   31 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLRK-EGHEVVGVFT   31 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred             CEEEEEc-CCHHHHHHHHHHHH-CCCcEEEEEc
Confidence            7999999 79999999999874 5899999996

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.098  Score=39.49  Aligned_cols=81  Identities=15%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE---EEEcc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDFT  114 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV---VIDfT  114 (161)
                      +.|.|+++++|+.+++.+. ..|..++.. ++..  .++.+.              .+++...   ..+..+   ..|.+
T Consensus        13 ~lITGas~GIG~aiA~~la-~~G~~Vv~~-~r~~--~~l~~~--------------~~~l~~~---~~~~~~~~~~~Dls   71 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALV-QQGLKVVGC-ARTV--GNIEEL--------------AAECKSA---GYPGTLIPYRCDLS   71 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHH-HTTCEEEEE-ESCH--HHHHHH--------------HHHHHHT---TCSSEEEEEECCTT
T ss_pred             EEEeCCCCHHHHHHHHHHH-HCCCEEEEE-ECCH--HHHHHH--------------HHHHHhc---CCCceEEEEEccCC
Confidence            8999999999999999998 578997654 4421  111111              1111110   011233   35788


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      .++...+.+..+.+.  ++++++-..|
T Consensus        72 ~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          72 NEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            888888777777665  6888876643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0049  Score=43.93  Aligned_cols=96  Identities=17%  Similarity=0.137  Sum_probs=56.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +|.|+|++|.+|...++.+. .-+++++++..++.. .+...-+|..   .+.-+  .|+.+.+.++.....+|+++|+.
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak-~~Ga~Vi~~~~s~~k-~~~~~~lGa~---~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~  105 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGTAQK-AQSALKAGAW---QVINYREEDLVERLKEITGGKKVRVVYDSV  105 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHH-HHTCEEEEEESSHHH-HHHHHHHTCS---EEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             EEEEEccccccchHHHHHHH-HhCCeEeecccchHH-HHHHHhcCCe---EEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence            69999999999999888765 778998877664321 1222222321   12112  34444333222345789999998


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      .++............|.-++.|.
T Consensus       106 g~~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2         106 GRDTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             CGGGHHHHHHTEEEEEEEEECCC
T ss_pred             cHHHHHHHHHHHhcCCeeeeccc
Confidence            77665555554445565555554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.81  E-value=0.072  Score=40.14  Aligned_cols=80  Identities=18%  Similarity=0.142  Sum_probs=47.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++ +.+++.  ....+               ..+.+..   ..++. +..|.+.
T Consensus         8 ~alVTGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~~~~---------------~~~~~~~---~~~~~~~~~Dv~~   65 (251)
T d1zk4a1           8 VAIITGGTLGIGLAIATKFV-EEGAKVM-ITGRHS--DVGEK---------------AAKSVGT---PDQIQFFQHDSSD   65 (251)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHH---------------HHHHHCC---TTTEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHH---------------HHHHhCC---CCcEEEEEccCCC
Confidence            46778999999999999987 6688865 555432  11111               1111110   01122 3457777


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      ++...+.+..+.+.  ++++++-..
T Consensus        66 ~~~v~~~~~~~~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          66 EDGWTKLFDATEKAFGPVSTLVNNA   90 (251)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCceEEEecc
Confidence            87777766666553  577776543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.75  E-value=0.032  Score=40.15  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=28.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +.-||+|+|+ |++|..++-.+...+-+.=+..+|.
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~   53 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDV   53 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3469999995 9999999999886665554558885

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.053  Score=44.61  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .||.|+|+ |.+|.++++.|. ..|+.=+-++|.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~-~~Gvg~i~lvD~   69 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLA-LSGFRQIHVIDM   69 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHH-TTTCCCEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEEC
Confidence            59999996 999999999997 667766678884

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.68  E-value=0.048  Score=37.87  Aligned_cols=91  Identities=14%  Similarity=0.114  Sum_probs=46.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      =+|.|.|+ |.+|...+..+. ..+.++++ ++++....+.....|..   .+..+  .++.+.+...  ..+.|.+|++
T Consensus        29 ~~vlv~G~-G~iG~~a~~~a~-~~g~~v~~-~~~~~~r~~~~k~~Ga~---~~~~~~~~~~~~~~~~~--~~~~~~~v~~  100 (168)
T d1rjwa2          29 EWVAIYGI-GGLGHVAVQYAK-AMGLNVVA-VDIGDEKLELAKELGAD---LVVNPLKEDAAKFMKEK--VGGVHAAVVT  100 (168)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-HTTCEEEE-ECSCHHHHHHHHHTTCS---EEECTTTSCHHHHHHHH--HSSEEEEEES
T ss_pred             CEEEEeec-ccchhhhhHHHh-cCCCeEec-cCCCHHHhhhhhhcCcc---eecccccchhhhhcccc--cCCCceEEee
Confidence            36899995 999998777655 67888654 44322111222222221   11111  2343332211  1345666666


Q ss_pred             cCchhHHHHHHHHHHcCCcEE
Q 031341          114 TDASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vV  134 (161)
                      +......+.+..+++.+-.++
T Consensus       101 ~~~~~~~~~a~~~l~~~G~i~  121 (168)
T d1rjwa2         101 AVSKPAFQSAYNSIRRGGACV  121 (168)
T ss_dssp             SCCHHHHHHHHHHEEEEEEEE
T ss_pred             cCCHHHHHHHHHHhccCCceE
Confidence            655555556555555443333

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.026  Score=40.23  Aligned_cols=32  Identities=9%  Similarity=0.275  Sum_probs=25.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -||.|+|+ |+.+|.++-.+.+. +.+ +-+++|+
T Consensus        19 k~vlIlGa-GGaarai~~al~~~-g~~-i~I~nRt   50 (170)
T d1nyta1          19 LRILLIGA-GGASRGVLLPLLSL-DCA-VTITNRT   50 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCE-EEEECSS
T ss_pred             CEEEEECC-cHHHHHHHHHhccc-ceE-EEeccch
Confidence            57999995 99999999998765 678 5577764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.63  E-value=0.062  Score=40.75  Aligned_cols=79  Identities=22%  Similarity=0.185  Sum_probs=47.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++ ++++..  .++.+.               .+.+..   ..... +..|.|.
T Consensus         8 valITGas~GIG~aia~~la-~~Ga~V~-i~~r~~--~~~~~~---------------~~~l~~---~~~~~~~~~Dv~~   65 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFV-RYGAKVV-IADIAD--DHGQKV---------------CNNIGS---PDVISFVHCDVTK   65 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH---------------HHHHCC---TTTEEEEECCTTC
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH---------------HHHhcC---CCceEEEEccCCC
Confidence            37788999999999999987 6688865 555432  111111               111110   01111 3457888


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYV  137 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigt  137 (161)
                      ++...+.+..+.+.  ++++++-.
T Consensus        66 ~~~v~~~~~~~~~~~g~iD~lVnn   89 (268)
T d2bgka1          66 DEDVRNLVDTTIAKHGKLDIMFGN   89 (268)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCcceeccc
Confidence            88877777666554  67887744

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.61  E-value=0.024  Score=40.05  Aligned_cols=35  Identities=29%  Similarity=0.305  Sum_probs=27.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      |||+|+||+|++|+.++-.+...+-+.=+.++|..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            79999998899999999988766544334578843

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.59  E-value=0.042  Score=40.55  Aligned_cols=84  Identities=20%  Similarity=0.226  Sum_probs=53.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+|+|+| +|.-|+.++.+|. +.+++++-.........+..+.      .|..+ -+++|+..      ..|+|.-.+ 
T Consensus        17 k~IaViG-YGsQG~AhAlNLr-DSG~~V~VGLr~gs~s~~~A~~------~Gf~v-~~~~eA~~------~aDiim~L~-   80 (182)
T d1np3a2          17 KKVAIIG-YGSQGHAHACNLK-DSGVDVTVGLRSGSATVAKAEA------HGLKV-ADVKTAVA------AADVVMILT-   80 (182)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHH-HTTCCEEEECCTTCHHHHHHHH------TTCEE-ECHHHHHH------TCSEEEECS-
T ss_pred             CEEEEEe-eCcHhHHHHhhhh-hcCCCEEEEcCCCCccHHHHhh------hcccc-ccHHHHhh------hcCeeeeec-
Confidence            5899999 8999999999986 7799887666532111222222      34444 47888875      799988555 


Q ss_pred             chhHH-----HHHHHHHHcCCcEEE
Q 031341          116 ASTVY-----DNVKQATAFGMRSVV  135 (161)
Q Consensus       116 p~~~~-----~~~~~al~~g~~vVi  135 (161)
                      |+...     +.+...++.|.-+..
T Consensus        81 PD~~q~~vy~~~I~p~lk~g~~L~F  105 (182)
T d1np3a2          81 PDEFQGRLYKEEIEPNLKKGATLAF  105 (182)
T ss_dssp             CHHHHHHHHHHHTGGGCCTTCEEEE
T ss_pred             chHHHHHHHHHhhhhhcCCCcEEEE
Confidence            55442     234444556665543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.59  E-value=0.029  Score=40.45  Aligned_cols=70  Identities=20%  Similarity=0.130  Sum_probs=42.7

Q ss_pred             CeeEEEEcCCCHHHHH--HHHHHHhcCC---cEEEEEEecCCC---C--cc---hhhhhcCCCCCCeeeeCCHHHHHhcc
Q 031341           35 NIKVIINGAVKEIGRA--AVIAVTKARG---MEVAGAIDSHSV---G--ED---IGMVCDMEQPLEIPVMSDLTMVLGSI  101 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~--i~~~l~~~~~---~eLvavvd~~~~---g--~~---~~~~~g~~~~~~i~v~~dl~~~l~~~  101 (161)
                      .|||+|+|+ |..|..  ++..+...+.   -||+ .+|.+..   +  .+   .....+  .+..+..++|+++++.  
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~--~~~~i~~~td~~eaL~--   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVG--ADLKFEKTMNLDDVII--   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTT--CCCEEEEESCHHHHHT--
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcC--CCeEEEEeCChhhccc--
Confidence            489999996 998864  3444554544   3655 7885321   0  11   111122  1345666789999995  


Q ss_pred             cccCCccEEEEcc
Q 031341          102 SQSKARAVVIDFT  114 (161)
Q Consensus       102 ~~~~~~DVVIDfT  114 (161)
                          ++|+|+...
T Consensus        76 ----dad~Vv~~~   84 (171)
T d1obba1          76 ----DADFVINTA   84 (171)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----CCCeEeeec
Confidence                899988443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.57  E-value=0.097  Score=39.35  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEE
Q 031341           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (161)
Q Consensus        37 kV-~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVID  112 (161)
                      || .|.|++++||+.+++.+. ..|.+++ +++++.  .++.+.              .++ +.+    ...+   +..|
T Consensus         3 KValITGas~GIG~aia~~la-~~Ga~V~-i~~r~~--~~l~~~--------------~~~-l~~----~g~~~~~~~~D   59 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLG-KEGLRVF-VCARGE--EGLRTT--------------LKE-LRE----AGVEADGRTCD   59 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHH-HHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHH-HHh----cCCcEEEEEee
Confidence            45 577999999999999987 6788865 445432  111111              111 111    1223   3467


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      .|.++...+.+..+.+.  ++.+++-..
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence            88888888877776654  478887543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.55  E-value=0.15  Score=38.66  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+++++.+. ..|.+++....+..   +..+              .+.+.+.+    ...+   +..|.
T Consensus         9 ~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~---~~~~--------------~~~~~~~~----~g~~~~~~~~Dv   66 (261)
T d1geea_           9 VVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKE---DEAN--------------SVLEEIKK----VGGEAIAVKGDV   66 (261)
T ss_dssp             EEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCH---HHHH--------------HHHHHHHH----TTCEEEEEECCT
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcH---HHHH--------------HHHHHHHh----cCCcEEEEEccC
Confidence            37788999999999999997 67888775543321   1000              11111211    2333   34577


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      |.++...+.+..+.+.  ++.+++-..|
T Consensus        67 t~~~~v~~~~~~~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          67 TVESDVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEeeccce
Confidence            8888887777766654  6888876543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.49  E-value=0.036  Score=43.73  Aligned_cols=109  Identities=9%  Similarity=0.065  Sum_probs=67.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC-------CCCeeeeCCHHHHHhccc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLGSIS  102 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~-------~~~i~v~~dl~~~l~~~~  102 (161)
                      -.+|+|-| +|++|+..++.+. ..|..++++.|+.     ..|.+..++.....       ..+..+  +.++++.   
T Consensus        36 gktvaIqG-fGnVG~~~A~~L~-e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~--~~~~~~~---  108 (293)
T d1hwxa1          36 DKTFAVQG-FGNVGLHSMRYLH-RFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKI--YEGSILE---  108 (293)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCB--CCSCGGG---
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccccc--CCccccc---
Confidence            36899999 6999999999987 5699999999953     34555444321110       011122  2234565   


Q ss_pred             ccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS  159 (161)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~  159 (161)
                        .++|+++=++..... .+++.   +-+..+|++-.  ..+++..+.|    ++.+|++
T Consensus       109 --~~~DIliPaA~~~~I~~~~a~---~l~ak~I~EgAN~P~t~eA~~~L----~~~gI~v  159 (293)
T d1hwxa1         109 --VDCDILIPAASEKQLTKSNAP---RVKAKIIAEGANGPTTPQADKIF----LERNIMV  159 (293)
T ss_dssp             --CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHH----HHTTCEE
T ss_pred             --CCccEEeeccccccccHHHHH---HHhhCEEeccCCCCCCcchHHHH----HHCCCEE
Confidence              589999966655444 23443   44778888864  3566654443    3445544

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.49  E-value=0.094  Score=39.03  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=27.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd   68 (161)
                      -.|.|.|+++++|+++++.+.+  ..+..++....
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r   37 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCR   37 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence            3599999999999999999875  57888776554

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.11  Score=39.68  Aligned_cols=84  Identities=13%  Similarity=0.149  Sum_probs=46.5

Q ss_pred             eEEE-EcCCCHHHHHHHHHHHhcCCcEEEEEEe--cCCCCcchhhhhcCCCCCCeeeeCCHHHHHhccc-ccCCcc-EEE
Q 031341           37 KVII-NGAVKEIGRAAVIAVTKARGMEVAGAID--SHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARA-VVI  111 (161)
Q Consensus        37 kV~V-iGa~G~mGr~i~~~l~~~~~~eLvavvd--~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~-~~~~~D-VVI  111 (161)
                      ||+| .|+++++|+.+++.+. ..|.+++.+..  ++..  ...               .+++...++. ...++. +.+
T Consensus         3 kVvlITGassGIG~a~A~~la-~~Ga~v~~v~~~~~~~~--~~~---------------~l~~~~~~~~~~~~~~~~~~~   64 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLA-SDPSQSFKVYATLRDLK--TQG---------------RLWEAARALACPPGSLETLQL   64 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHH-TCTTCCEEEEEEESCGG--GTH---------------HHHHHHHHTTCCTTSEEEEEC
T ss_pred             CEEEEccCCCHHHHHHHHHHH-HCCCCeEEEEEecCChh--hhH---------------HHHHHHHHHhccCCceEEEec
Confidence            5654 5999999999999987 56666544433  3211  111               1111111100 001122 345


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (161)
Q Consensus       112 DfT~p~~~~~~~~~al~~g~~vVigtt  138 (161)
                      |.|.++...+.+..+.+.++.+++-..
T Consensus        65 Dv~~~~~~~~~~~~~~~g~idilvnna   91 (285)
T d1jtva_          65 DVRDSKSVAAARERVTEGRVDVLVCNA   91 (285)
T ss_dssp             CTTCHHHHHHHHHTCTTSCCSEEEECC
T ss_pred             cccchHhhhhhhhhccccchhhhhhcc
Confidence            777787777777666666677776543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.025  Score=40.80  Aligned_cols=96  Identities=10%  Similarity=-0.009  Sum_probs=50.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEE-EEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVA-GAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLv-avvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDf  113 (161)
                      .|.|.|++|.+|...++... .-+.+.+ ++.+++..........|.   ..+.-+  +++.+.+.++. ...+|+++|.
T Consensus        33 tVLI~gaaGgVG~~aiQlak-~~Ga~~vi~~~~~~e~~~~l~~~~ga---d~vi~~~~~~~~~~~~~~~-~~GvDvv~D~  107 (187)
T d1vj1a2          33 TMVVSGAAGACGSLAGQIGH-LLGCSRVVGICGTQEKCLFLTSELGF---DAAVNYKTGNVAEQLREAC-PGGVDVYFDN  107 (187)
T ss_dssp             EEEESSTTSTTGGGHHHHHH-HTTCSEEEEEESSHHHHHHHHHHSCC---SEEEETTSSCHHHHHHHHC-TTCEEEEEES
T ss_pred             EEEEECCCchhhHHHHHHHH-HcCCcceecccchHHHHhhhhhcccc---eEEeeccchhHHHHHHHHh-ccCceEEEec
Confidence            59999999999999998765 5566544 444432111111111221   111111  34555444332 2468999998


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      .-.+.....+......|.-+++|.
T Consensus       108 vGg~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         108 VGGDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             SCHHHHHHHHTTEEEEEEEEEC--
T ss_pred             CCchhHHHHhhhccccccEEEecc
Confidence            865544444444444445555564

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.45  E-value=0.0077  Score=43.88  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -+|.|.|++|.+|+.+++.+. ..+.+++. +++
T Consensus        24 K~vlItGasgGIG~~ia~~la-~~G~~V~~-~~r   55 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLA-GEGAEVVL-CGR   55 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEECCCHHHHHHHHHHHH-hhccchhh-ccc
Confidence            479999999999999999997 55788765 444

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.43  E-value=0.068  Score=40.36  Aligned_cols=79  Identities=24%  Similarity=0.295  Sum_probs=49.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .+.|.|+++++|+++++.+. ..|.+++ +.+++.  ..                  ++++.+++.  .++. +..|.|.
T Consensus         7 ~alVTGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~------------------l~~~~~~~~--~~~~~~~~Dvt~   62 (256)
T d1k2wa_           7 TALITGSARGIGRAFAEAYV-REGARVA-IADINL--EA------------------ARATAAEIG--PAACAIALDVTD   62 (256)
T ss_dssp             EEEEETCSSHHHHHHHHHHH-HTTEEEE-EEESCH--HH------------------HHHHHHHHC--TTEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HH------------------HHHHHHHhC--CceEEEEeeCCC
Confidence            47889999999999999987 6788866 455431  11                  111111100  1121 4567888


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      ++...+.+..+.+.  ++.+++-..|
T Consensus        63 ~~~v~~~~~~~~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          63 QASIDRCVAELLDRWGSIDILVNNAA   88 (256)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCccEEEeecc
Confidence            88777777666654  6788776543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.42  E-value=0.025  Score=43.02  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=27.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ||.|.|++|.+|+.+++.|++. |.++.++...
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~-g~~V~~~~r~   33 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEK-GYRVHGLVAR   33 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-cCEEEEEECC
Confidence            7999999999999999999854 8999877653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.42  E-value=0.029  Score=41.70  Aligned_cols=32  Identities=31%  Similarity=0.406  Sum_probs=26.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      ||.|.|++|++|+++++.+. ..|.+++ ++|+.
T Consensus         4 kVlITGas~GIG~aia~~l~-~~G~~V~-~~~~~   35 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFK-KNGYTVL-NIDLS   35 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTEEEE-EEESS
T ss_pred             EEEEECCCCHHHHHHHHHHH-HCCCEEE-EEECC
Confidence            78999999999999999998 5689866 45643

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.14  Score=37.78  Aligned_cols=30  Identities=27%  Similarity=0.565  Sum_probs=24.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~   69 (161)
                      |.|.|++|.+|+.+++.|.+. +. +++ ++|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~-g~~~V~-~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDK-GITDIL-VVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCCCEE-EEEC
T ss_pred             EEEecCccHHHHHHHHHHHhC-CCCeEE-EEEC
Confidence            789999999999999999866 54 555 4563

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.38  E-value=0.022  Score=39.77  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=25.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |||+|+|+ |++|..++-.+...+-..=+..+|.
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di   33 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDV   33 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEec
Confidence            79999996 9999999988876654433448884

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.28  E-value=0.16  Score=38.30  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=48.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      ++.|.|+++.||+++++.+. ..|.+++. .+++.  .++.+               ..+.+..    ....   ..+|+
T Consensus         8 ~alITGas~GIG~aia~~la-~~G~~V~i-~~r~~--~~l~~---------------~~~~~~~----~~~~~~~~~~D~   64 (258)
T d1ae1a_           8 TALVTGGSKGIGYAIVEELA-GLGARVYT-CSRNE--KELDE---------------CLEIWRE----KGLNVEGSVCDL   64 (258)
T ss_dssp             EEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHH---------------HHHHHHH----TTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHH---------------HHHHHHh----cCCCceEEEeec
Confidence            58999999999999999987 67888665 44421  11111               1111111    1222   24688


Q ss_pred             cCchhHHHHHHHHHHc--C-CcEEEeC
Q 031341          114 TDASTVYDNVKQATAF--G-MRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g-~~vVigt  137 (161)
                      +.++...+....+.+.  | +.+++-.
T Consensus        65 s~~~~~~~~~~~~~~~~~g~idilinn   91 (258)
T d1ae1a_          65 LSRTERDKLMQTVAHVFDGKLNILVNN   91 (258)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEEEecc
Confidence            8888887777666554  3 6677643

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=94.24  E-value=0.13  Score=39.08  Aligned_cols=90  Identities=9%  Similarity=0.023  Sum_probs=56.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~-----~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV  110 (161)
                      -||+|+| +|.-|+.++..|..+     .++.++-........++..+..|+. ..+..+ -+++|+..      .+|+|
T Consensus        45 KkIaViG-YGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~-v~~~~v-~~v~EAv~------~ADiV  115 (226)
T d1qmga2          45 KQIGVIG-WGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFS-EENGTL-GDMWETIS------GSDLV  115 (226)
T ss_dssp             SEEEEEC-CSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCC-GGGTCE-EEHHHHHH------TCSEE
T ss_pred             CEEEEEE-eccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCc-cCCCcc-cCHHHHHh------hCCEE
Confidence            4799999 899999999998753     5677766665432223444444442 122223 36777765      79998


Q ss_pred             EEccCchhH----HHHHHHHHHcCCcEEE
Q 031341          111 IDFTDASTV----YDNVKQATAFGMRSVV  135 (161)
Q Consensus       111 IDfT~p~~~----~~~~~~al~~g~~vVi  135 (161)
                      ...+ |+..    ++.+.--++.|..+..
T Consensus       116 miLl-PDe~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         116 LLLI-SDSAQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             EECS-CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEec-chHHHHHHHHHHHHhcCCCceeee
Confidence            8555 5433    3445556667766554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.21  E-value=0.13  Score=38.66  Aligned_cols=78  Identities=13%  Similarity=0.133  Sum_probs=45.8

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEcc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDfT  114 (161)
                      +.|.|+++++|+.+++.+. ..|.+++ +++++.  .++.+               ..+.+.+    ...+   +..|.|
T Consensus        13 alITGas~GIG~a~a~~la-~~Ga~V~-~~~r~~--~~l~~---------------~~~~l~~----~g~~~~~~~~Dvt   69 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLA-KSVSHVI-CISRTQ--KSCDS---------------VVDEIKS----FGYESSGYAGDVS   69 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHT-TTSSEEE-EEESSH--HHHHH---------------HHHHHHT----TTCCEEEEECCTT
T ss_pred             EEEeCCCCHHHHHHHHHHH-HcCCEEE-EEECCH--HHHHH---------------HHHHHHh----cCCcEEEEEccCC
Confidence            4566999999999999986 7788865 455432  11111               1111111    1222   345777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      .++...+.+..+.+.  ++.+++-..
T Consensus        70 ~~~~v~~~~~~~~~~~g~iDilvnna   95 (251)
T d2c07a1          70 KKEEISEVINKILTEHKNVDILVNNA   95 (251)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCceeeeecc
Confidence            777777766665443  466776543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.19  E-value=0.028  Score=39.64  Aligned_cols=67  Identities=19%  Similarity=0.149  Sum_probs=40.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~---g--~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      ||+|+|+ |++|..++-.+....-. ||+ .+|....   |  .|+.+..... .... ....|++++       .++|+
T Consensus         3 KI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~~~~~~g~~~Dl~~a~~~~-~~~~~~~~~d~~~l-------~~adi   72 (146)
T d1hyha1           3 KIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANL-EAHGNIVINDWAAL-------ADADV   72 (146)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGS-SSCCEEEESCGGGG-------TTCSE
T ss_pred             eEEEECc-CHHHHHHHHHHHhcCCCceEE-EEecccchhhhHHHhhhcccccc-CCccceeccCHHHh-------ccccE
Confidence            8999995 99999999888755433 555 7885321   1  1232221111 2222 334666664       37999


Q ss_pred             EEEc
Q 031341          110 VIDF  113 (161)
Q Consensus       110 VIDf  113 (161)
                      ||-.
T Consensus        73 VVit   76 (146)
T d1hyha1          73 VIST   76 (146)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8854

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.18  E-value=0.13  Score=38.58  Aligned_cols=79  Identities=27%  Similarity=0.388  Sum_probs=48.6

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEE
Q 031341           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (161)
Q Consensus        37 kV-~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVID  112 (161)
                      || .|.|+++++|+.+++.+. ..|..++ +.+++.  .++.+.              .+++.+     ...+   +..|
T Consensus         2 KValITGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~~--------------~~~i~~-----~g~~~~~~~~D   58 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLV-KDGFAVA-IADYND--ATAKAV--------------ASEINQ-----AGGHAVAVKVD   58 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHHHHH-----TTCCEEEEECC
T ss_pred             CEEEEcCCccHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHHHHh-----cCCcEEEEEee
Confidence            56 667999999999999997 5688865 455432  111111              111111     1222   3467


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       113 fT~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      .|.++...+.+..+.+.  ++.+++-..
T Consensus        59 v~~~~~v~~~~~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          59 VSDRDQVFAAVEQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCccEEEecc
Confidence            88888887777776653  577787543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.17  E-value=0.23  Score=38.42  Aligned_cols=88  Identities=24%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCch
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~  117 (161)
                      +.|.|+++++|+.+++.+. ..|+.++ +.|+........       +.    ...++++.+++. .....+..|.+.++
T Consensus        10 alITGas~GIG~aiA~~la-~~Ga~Vv-i~d~~~~~~~~~-------~~----~~~~~~~~~~~~-~~~~~~~~d~~~~~   75 (302)
T d1gz6a_          10 VLVTGAGGGLGRAYALAFA-ERGALVV-VNDLGGDFKGVG-------KG----SSAADKVVEEIR-RRGGKAVANYDSVE   75 (302)
T ss_dssp             EEETTTTSHHHHHHHHHHH-HTTCEEE-EECCCBCTTSCB-------CC----SHHHHHHHHHHH-HTTCEEEEECCCGG
T ss_pred             EEEeCCCCHHHHHHHHHHH-HcCCEEE-EEeCCchhhhhh-------hh----HHHHHHHHHHHh-hcccccccccchHH
Confidence            7778999999999999987 7788855 555432100000       00    011222211100 13456778888888


Q ss_pred             hHHHHHHHHHHc--CCcEEEeCCC
Q 031341          118 TVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       118 ~~~~~~~~al~~--g~~vVigttg  139 (161)
                      ...+.+..+++.  ++.+++-..|
T Consensus        76 ~~~~~v~~~~~~~G~iDiLVnNAG   99 (302)
T d1gz6a_          76 AGEKLVKTALDTFGRIDVVVNNAG   99 (302)
T ss_dssp             GHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCc
Confidence            777777666654  5888876543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.16  E-value=0.23  Score=37.06  Aligned_cols=78  Identities=21%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++. .++... ..                  .++.++.    .+.+   +..|.
T Consensus         7 valVTGas~GIG~aia~~la-~~Ga~V~~-~~~~~~-~~------------------~~~~~~~----~g~~~~~~~~Dv   61 (247)
T d2ew8a1           7 LAVITGGANGIGRAIAERFA-VEGADIAI-ADLVPA-PE------------------AEAAIRN----LGRRVLTVKCDV   61 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEE-EESSCC-HH------------------HHHHHHH----TTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCch-HH------------------HHHHHHH----cCCcEEEEEeeC
Confidence            36788999999999999987 77888664 454321 11                  1111111    1122   35577


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      |.++.....+..+.+.  ++.+++-..|
T Consensus        62 s~~~~v~~~~~~~~~~~G~iDilVnnAG   89 (247)
T d2ew8a1          62 SQPGDVEAFGKQVISTFGRCDILVNNAG   89 (247)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888877777766664  6888876543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.15  E-value=0.025  Score=44.59  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav   66 (161)
                      +||.|.|++|.+|+.+++.|+ ..|.+++++
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll-~~g~~V~~i   31 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLS-KKNYEVCIV   31 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCcCEEEEE
Confidence            699999999999999999998 567997754

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.12  E-value=0.01  Score=43.19  Aligned_cols=94  Identities=19%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCH-HHHHhcccccCCccEEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl-~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      +|.|.|++|.+|...++.+ +.-++++++...++.. .+.....|..   .+.-+++. ++..... ....+|+|+|.--
T Consensus        34 ~VLI~gaaGGVG~~aiQla-k~~Ga~Viat~~s~~k-~~~~~~lGa~---~vi~~~~~~~~~~~~~-~~~gvD~vid~vg  107 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSML-AKRGYTVEASTGKAAE-HDYLRVLGAK---EVLAREDVMAERIRPL-DKQRWAAAVDPVG  107 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCTTC-HHHHHHTTCS---EEEECC---------C-CSCCEEEEEECST
T ss_pred             EEEEEeccchHHHHHHHHH-HHcCCceEEecCchHH-HHHHHhcccc---eeeecchhHHHHHHHh-hccCcCEEEEcCC
Confidence            5999999999999988865 4789999998875432 2222223321   11112222 2222111 1357999999764


Q ss_pred             chhHHHHHHHHHHcCCcE-EEeC
Q 031341          116 ASTVYDNVKQATAFGMRS-VVYV  137 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~v-Vigt  137 (161)
                      -+ ..+....+++.|=++ ++|.
T Consensus       108 g~-~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         108 GR-TLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             TT-THHHHHHTEEEEEEEEECSC
T ss_pred             ch-hHHHHHHHhCCCceEEEeec
Confidence            33 344444444444444 3443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.06  E-value=0.031  Score=43.38  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=28.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      =||.|.|++|.+|+.+++.|++ .|.++.+.++
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~-~G~~V~~~vR   43 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLE-HGYKVRGTAR   43 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEeC
Confidence            5899999999999999999985 4899998876

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.066  Score=40.23  Aligned_cols=78  Identities=21%  Similarity=0.371  Sum_probs=48.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCch
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~  117 (161)
                      +.|.|+++++|+.+++.+. ..|.+++ +.++..  .++.+               +.+.+..    ...-+..|.|.++
T Consensus         7 alITGas~GIG~a~a~~l~-~~G~~Vv-~~~r~~--~~l~~---------------~~~~~~~----~~~~~~~Dv~~~~   63 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLA-ARGAKVI-GTATSE--NGAQA---------------ISDYLGA----NGKGLMLNVTDPA   63 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHH-HTTCEEE-EEESSH--HHHHH---------------HHHHHGG----GEEEEECCTTCHH
T ss_pred             EEEeCCCCHHHHHHHHHHH-HcCCEEE-EEeCCH--HHHHH---------------HHHHhCC----CCcEEEEEecCHH
Confidence            5667999999999999987 6689876 455432  11111               1111110    1122556788888


Q ss_pred             hHHHHHHHHHHc--CCcEEEeCC
Q 031341          118 TVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       118 ~~~~~~~~al~~--g~~vVigtt  138 (161)
                      ...+.+..+.+.  ++.+++-..
T Consensus        64 ~v~~~~~~~~~~~g~iDilVnnA   86 (243)
T d1q7ba_          64 SIESVLEKIRAEFGEVDILVNNA   86 (243)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEECC
T ss_pred             HhhhhhhhhhcccCCcceehhhh
Confidence            777777666654  577777554

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.01  E-value=0.047  Score=40.62  Aligned_cols=31  Identities=35%  Similarity=0.470  Sum_probs=26.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +|.|.|++|++|+.+++.+. ..|.+++. +|+
T Consensus         4 ~vlITGas~GIG~a~a~~l~-~~G~~V~~-~~~   34 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFR-ARNWWVAS-IDV   34 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-TTTCEEEE-EES
T ss_pred             EEEEECCCCHHHHHHHHHHH-HCCCEEEE-EeC
Confidence            68999999999999999987 67898764 453

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.99  E-value=0.019  Score=40.61  Aligned_cols=26  Identities=19%  Similarity=0.475  Sum_probs=22.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKAR   59 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~   59 (161)
                      +|+||.|+||+|++|+.++-.|...+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            57999999999999999999887543

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.2  Score=42.00  Aligned_cols=99  Identities=12%  Similarity=0.065  Sum_probs=60.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCe-eeeCC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEI-PVMSD   93 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~-----~~g~~~~~~i-~v~~d   93 (161)
                      -||.|+|+ |..|.++++.|. .+|+.=+-++|.+.                .|++-.+     +..+.....+ .+..+
T Consensus        26 s~VlvvG~-gglG~Ei~knLv-l~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~  103 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  103 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHH-TTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHH-HhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            59999995 999999999997 77887777888431                1221111     1111101122 23345


Q ss_pred             HHHHHhcc-cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341           94 LTMVLGSI-SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (161)
Q Consensus        94 l~~~l~~~-~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig  136 (161)
                      +++.+..- +--...|+||+...+... ...-..|.++++|+|.+
T Consensus       104 ~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~  148 (529)
T d1yova1         104 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLIC  148 (529)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             chhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            55543210 000257999988765554 45668888999999855

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.90  E-value=0.093  Score=39.53  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=24.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+.|.|++++||+.+++.+. ..|.+++ +.++
T Consensus         6 ~alITGas~GIG~aiA~~la-~~Ga~V~-~~~r   36 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALA-AQGADIV-LNGF   36 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHH-HTTCEEE-EECC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEeC
Confidence            35677999999999999987 6788865 4443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.88  E-value=0.16  Score=38.26  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=49.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|++++||+.+++.+. ..|.+++. .+++.  .++.+.              .+++..     ....   +..|.
T Consensus        10 ~alITGas~GIG~aia~~la-~~Ga~V~~-~~r~~--~~l~~~--------------~~~~~~-----~g~~~~~~~~Dv   66 (259)
T d2ae2a_          10 TALVTGGSRGIGYGIVEELA-SLGASVYT-CSRNQ--KELNDC--------------LTQWRS-----KGFKVEASVCDL   66 (259)
T ss_dssp             EEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH--------------HHHHHH-----TTCEEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH--------------HHHHHh-----cCCCceEEEeeC
Confidence            47889999999999999997 56888664 45432  111111              111111     1222   34677


Q ss_pred             cCchhHHHHHHHHHHc---CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF---GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~---g~~vVigttg  139 (161)
                      |.++...+.+..+.+.   ++.+++-..|
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          67 SSRSERQELMNTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCceEEEECCc
Confidence            8888887777665552   3788876543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.87  E-value=0.033  Score=39.22  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=27.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ||+|+|++|++|+.++-.+...+-..=...+|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            899999779999999999887766644558883

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.86  E-value=0.012  Score=42.32  Aligned_cols=93  Identities=15%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhc-c--cccCCccEEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGS-I--SQSKARAVVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~-~--~~~~~~DVVIDf  113 (161)
                      .|.|.|++|..|...++.. +.-++++++.+.++.. .+....+|.      ...-+.++...+ +  .....+|+++|.
T Consensus        26 ~VLV~gaaGgVG~~avQlA-k~~Ga~Viat~~s~~k-~~~~~~lGa------d~vi~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSML-NKRGYDVVASTGNREA-ADYLKQLGA------SEVISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHH-HHHTCCEEEEESSSST-HHHHHHHTC------SEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             EEEEeCCcchHHHHHHHHH-HHcCCceEEEecCHHH-HHHHHhhcc------cceEeccchhchhhhcccCCCceEEEec
Confidence            4999999999999988765 5778999998875432 222222332      111122332111 0  012469999998


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeC
Q 031341          114 TDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      --.+...+.+......|.-+++|.
T Consensus        98 vgg~~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2          98 VGGKQLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             CCTHHHHHHHTTEEEEEEEEECCC
T ss_pred             CcHHHHHHHHHHhccCceEEEeec
Confidence            876655555555555555556664

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.85  E-value=0.1  Score=39.53  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=48.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++. ++++.  .++.+.              .+++..     ...+   ...|.
T Consensus        10 ~alVTGas~GIG~aiA~~la-~~Ga~V~~-~~r~~--~~l~~~--------------~~~~~~-----~~~~~~~~~~Dv   66 (259)
T d1xq1a_          10 TVLVTGGTKGIGHAIVEEFA-GFGAVIHT-CARNE--YELNEC--------------LSKWQK-----KGFQVTGSVCDA   66 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH--------------HHHHHH-----TTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH--------------HHHHHh-----cCCceEEEeccC
Confidence            58899999999999999997 56888664 45432  111111              111111     1222   34577


Q ss_pred             cCchhHHHHHHHHHHc--C-CcEEEeCC
Q 031341          114 TDASTVYDNVKQATAF--G-MRSVVYVP  138 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g-~~vVigtt  138 (161)
                      |.++...+.+..+.+.  | +.+++-..
T Consensus        67 ~~~~~v~~~~~~~~~~~~g~idilvnnA   94 (259)
T d1xq1a_          67 SLRPEREKLMQTVSSMFGGKLDILINNL   94 (259)
T ss_dssp             TSHHHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcccccccc
Confidence            8888877777666553  4 67776543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.83  E-value=0.078  Score=36.88  Aligned_cols=68  Identities=13%  Similarity=0.104  Sum_probs=41.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchh---hhhcCCCCCCeeeeCCHHHHHhcccccCCc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIG---MVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~---g--~~~~---~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~  107 (161)
                      -||+|+|+ |++|..++-.+...+-.++ ..+|....   |  .|..   .+.+.  ...+...+|++++-       +.
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl-~l~D~~~~~~~~~~~Dl~~~~~~~~~--~~~i~~~~d~~~~~-------~a   70 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDI-VLLDIVEGVPQGKALDLYEASPIEGF--DVRVTGTNNYADTA-------NS   70 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEE-EEECSSSSHHHHHHHHHHTTHHHHTC--CCCEEEESCGGGGT-------TC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceE-EEEeeccccchhHHHHhhccccccCC--CCEEEecCcHHHhc-------CC
Confidence            38999995 9999999988876655584 46784321   1  1111   11111  12233457777753       78


Q ss_pred             cEEEEcc
Q 031341          108 AVVIDFT  114 (161)
Q Consensus       108 DVVIDfT  114 (161)
                      |++|..+
T Consensus        71 dvvvita   77 (142)
T d1uxja1          71 DVIVVTS   77 (142)
T ss_dssp             SEEEECC
T ss_pred             CEEEEee
Confidence            9888654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=93.72  E-value=0.37  Score=35.96  Aligned_cols=76  Identities=24%  Similarity=0.333  Sum_probs=47.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++ +.+++....+..                  +.+.      ..=+-+|.|.+
T Consensus         7 ~alITGas~GIG~aia~~la-~~G~~V~-~~~~~~~~~~~~------------------~~~~------~~~~~~Dv~~~   60 (248)
T d2d1ya1           7 GVLVTGGARGIGRAIAQAFA-REGALVA-LCDLRPEGKEVA------------------EAIG------GAFFQVDLEDE   60 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESSTTHHHHH------------------HHHT------CEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCHHHHHHH------------------HHcC------CeEEEEeCCCH
Confidence            47888999999999999987 7788865 555432211111                  1111      11134577777


Q ss_pred             hhHHHHHHHHHHc--CCcEEEeCC
Q 031341          117 STVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       117 ~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      +...+.+..+.+.  ++.+++-..
T Consensus        61 ~~v~~~~~~~~~~~G~iDiLVnnA   84 (248)
T d2d1ya1          61 RERVRFVEEAAYALGRVDVLVNNA   84 (248)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEeC
Confidence            7777666655554  577777543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.03  Score=43.26  Aligned_cols=30  Identities=23%  Similarity=0.312  Sum_probs=26.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      ||.|.|++|.+|+.+++.|++ .|.+++++-
T Consensus         4 KILITG~tGfIGs~lv~~Ll~-~g~~V~~ld   33 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLE-AGYLPVVID   33 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHH-CcCEEEEEE
Confidence            799999999999999999985 578888754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.66  E-value=0.072  Score=38.08  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=28.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      +.||+|+|+ |++|..++-.+...+-..=...+|..
T Consensus        19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGV-GDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            469999996 99999999988876666555688843

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.038  Score=42.37  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV-~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      || .|.|++|.+|+.+++.|.+ .|.+++++..+
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~-~g~~V~~i~r~   34 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLE-KGYEVHGIVRR   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CEEEEecCCcHHHHHHHHHHHH-CcCEEEEEECC
Confidence            78 6999999999999999985 59999987653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.47  E-value=0.14  Score=38.61  Aligned_cols=78  Identities=19%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++ +.+++.  ..+.+               ..+.+..    ...+   +..|.
T Consensus         7 ~alITGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~---------------~~~~~~~----~g~~~~~~~~Dv   63 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLA-EEGTAIA-LLDMNR--EALEK---------------AEASVRE----KGVEARSYVCDV   63 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHH---------------HHHHHHT----TTSCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHH---------------HHHHHHh----cCCcEEEEEccC
Confidence            47788999999999999987 6788865 556432  11111               1111111    1222   35677


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigt  137 (161)
                      |.++...+.+..+.+.  ++.+++-.
T Consensus        64 ~~~~~v~~~~~~~~~~~g~iDilVnn   89 (260)
T d1zema1          64 TSEEAVIGTVDSVVRDFGKIDFLFNN   89 (260)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeehhh
Confidence            8888777777666554  57777644

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.18  Score=37.93  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=49.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++. .+++.  .++.+.              .+++-+     ...+   +..|.
T Consensus        13 ~alITGas~GIG~aia~~la-~~Ga~V~~-~~r~~--~~~~~~--------------~~~l~~-----~g~~~~~~~~Dv   69 (255)
T d1fmca_          13 CAIITGAGAGIGKEIAITFA-TAGASVVV-SDINA--DAANHV--------------VDEIQQ-----LGGQAFACRCDI   69 (255)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-TTTCEEEE-EESCH--HHHHHH--------------HHHHHH-----TTCCEEEEECCT
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH--------------HHHHHH-----cCCcEEEEEccC
Confidence            57889999999999999987 77898764 45432  111111              111111     1222   35677


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      |.++...+.+..+.+.  ++++++-..|
T Consensus        70 s~~~~~~~~~~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          70 TSEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             TCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEeeeCCc
Confidence            7787777777666554  5887776543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.38  E-value=0.022  Score=40.69  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -||.|+|+ |+++|.++..+.+ .++.-+-+++|+
T Consensus        18 ~~vlIlGa-GGaarai~~aL~~-~g~~~I~I~nR~   50 (167)
T d1npya1          18 AKVIVHGS-GGMAKAVVAAFKN-SGFEKLKIYARN   50 (167)
T ss_dssp             SCEEEECS-STTHHHHHHHHHH-TTCCCEEEECSC
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-CCCCEEEEeccc
Confidence            58999995 9999999999874 466445567764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.31  E-value=0.026  Score=41.00  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=25.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      =||+|+|+ |.||+.|+..+. ..|++++ ++|++
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a-~~G~~V~-l~D~~   36 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSA-SKGTPIL-MKDIN   36 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHH-HTTCCEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEECC
Confidence            36999995 999999998776 5689866 78753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.31  E-value=0.1  Score=38.93  Aligned_cols=30  Identities=27%  Similarity=0.448  Sum_probs=25.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .+.|.|+++.+|+.+++.+. ..|++++...
T Consensus         7 ~alItGas~GIG~aia~~l~-~~G~~V~~~~   36 (241)
T d2a4ka1           7 TILVTGAASGIGRAALDLFA-REGASLVAVD   36 (241)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEEEE
Confidence            46788999999999999987 7789887443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.26  E-value=0.15  Score=38.28  Aligned_cols=79  Identities=24%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      .+.|.|+++++|+++++.+. ..|.+++ +.++..  .+..++               .+-+..    ...-+..|.|.+
T Consensus         8 ~alITGas~GIG~aia~~la-~~G~~V~-~~~r~~--~~~~~~---------------~~~~~~----~~~~~~~Dv~~~   64 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMV-AEGAKVV-FGDILD--EEGKAM---------------AAELAD----AARYVHLDVTQP   64 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH---------------HHHTGG----GEEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH---------------HHHhhC----cceEEEeecCCH
Confidence            36677999999999999987 6788865 455432  111111               011110    011134677888


Q ss_pred             hhHHHHHHHHHHc--CCcEEEeCC
Q 031341          117 STVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       117 ~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      +...+.+..+.+.  ++.+++-..
T Consensus        65 ~~v~~~~~~~~~~~g~idilinnA   88 (244)
T d1nffa_          65 AQWKAAVDTAVTAFGGLHVLVNNA   88 (244)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECC
Confidence            7777766665553  577776554

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.13  E-value=0.12  Score=41.98  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=59.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCH--HHHHhcccccCCcc-EEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARA-VVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl--~~~l~~~~~~~~~D-VVID  112 (161)
                      .+|.+.|+ |.-|+..++.+. ..+.++++++|....++  ++     .-.|+||.+.-  .+...     ...+ +.|+
T Consensus        39 ~~~~l~g~-~~~~~~~~~~~~-~~~~~v~~~~d~~~~~~--~~-----~~~g~pv~s~~~~~~~~~-----~~~~~~~v~  104 (395)
T d2py6a1          39 TRLVILGT-KGFGAHLMNVRH-ERPCEVIAAVDDFRYHS--GE-----LYYGLPIISTDRFTELAT-----HDRDLVALN  104 (395)
T ss_dssp             CEEEEECS-SSTHHHHHSCSS-SCSSEEEEEECTTTTTS--CC-----EETTEEEECHHHHHHHHH-----TCTTEEEEE
T ss_pred             ceEEEEcC-chhHHHHHHHHH-HCCceEEEEecCchhhc--Cc-----eecceEeecHHHhhhhhh-----ccCcEEEEE
Confidence            68999995 999999998764 78999999999643221  11     13588987432  23333     2445 6777


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEEE
Q 031341          113 FTDASTVYDNV-KQATAFGMRSVV  135 (161)
Q Consensus       113 fT~p~~~~~~~-~~al~~g~~vVi  135 (161)
                      ++.+....... ..+.++|++.+-
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~  128 (395)
T d2py6a1         105 TCRYDGPKRFFDQICRTHGIPHLN  128 (395)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCCEEE
T ss_pred             eccccchhhHHHHHHHhcCCcccc
Confidence            77776665544 677789998763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.04  E-value=0.051  Score=39.67  Aligned_cols=74  Identities=16%  Similarity=0.117  Sum_probs=39.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--eeCCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~--v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .|.|+|+ |.+|...+..+. .-+...+.++|+...-.+.....|..   -+.  ...++.+.+.++.....+|++||++
T Consensus        28 tVlV~Ga-G~vGl~a~~~ak-~~ga~~Vi~~d~~~~rl~~a~~~Ga~---~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          28 TVYVAGA-GPVGLAAAASAR-LLGAAVVIVGDLNPARLAHAKAQGFE---IADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHTTCE---EEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             EEEEECc-CHHHHHHHHHHH-hhcccceeeecccchhhHhhhhcccc---EEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            6999996 999987777665 55565566667532111222222211   011  1133333222221235799999987


Q ss_pred             C
Q 031341          115 D  115 (161)
Q Consensus       115 ~  115 (161)
                      -
T Consensus       103 G  103 (195)
T d1kola2         103 G  103 (195)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=92.83  E-value=0.096  Score=39.69  Aligned_cols=104  Identities=7%  Similarity=0.095  Sum_probs=62.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      -.+|+|-| .|++|+.+++.|. ..+..++++-++.   ..+..+..   ..+.. ..+.++++.     .++|+++=++
T Consensus        39 g~~v~IqG-~GnVG~~~a~~L~-~~Gakvv~~d~~~---~~~~~~~~---~~g~~-~~~~~~~~~-----~~cDIl~PcA  104 (230)
T d1leha1          39 GLAVSVQG-LGNVAKALCKKLN-TEGAKLVVTDVNK---AAVSAAVA---EEGAD-AVAPNAIYG-----VTCDIFAPCA  104 (230)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEECSCH---HHHHHHHH---HHCCE-ECCGGGTTT-----CCCSEEEECS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEeecccH---HHHHHHHH---hcCCc-ccCCccccc-----ccccEecccc
Confidence            36899999 6999999999986 5689988543321   11111111   11222 335677776     5899999777


Q ss_pred             CchhHH-HHHHHHHHcCCcEEEeCC--CCC-HHHHHHHHHHhhhcCeee
Q 031341          115 DASTVY-DNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 ~p~~~~-~~~~~al~~g~~vVigtt--g~~-~e~~~~L~~~A~~~~Vv~  159 (161)
                      ...... +++.   +-+..+|+|-.  +++ ++..+.|    ++.+|+|
T Consensus       105 ~~~~I~~~~~~---~l~ak~Ive~ANn~~t~~ea~~~L----~~rGI~~  146 (230)
T d1leha1         105 LGAVLNDFTIP---QLKAKVIAGSADNQLKDPRHGKYL----HELGIVY  146 (230)
T ss_dssp             CSCCBSTTHHH---HCCCSEECCSCSCCBSSHHHHHHH----HHHTCEE
T ss_pred             cccccChHHhh---ccCccEEEecccCCCCCchHHHHH----HhhCcEE
Confidence            655443 3333   44678888765  454 4443333    3445554

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.74  E-value=0.14  Score=38.81  Aligned_cols=83  Identities=22%  Similarity=0.254  Sum_probs=48.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhccc-ccCCc-cEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKAR-AVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~-~~~~~-DVVIDfT  114 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++ +.+++.  .++.+               ..+.+.+.. ...++ =+..|.|
T Consensus         7 ~alVTGas~GIG~aia~~la-~~Ga~V~-l~~r~~--~~l~~---------------~~~~l~~~~~~~~~~~~~~~Dvs   67 (272)
T d1xkqa_           7 TVIITGSSNGIGRTTAILFA-QEGANVT-ITGRSS--ERLEE---------------TRQIILKSGVSEKQVNSVVADVT   67 (272)
T ss_dssp             EEEETTCSSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHH---------------HHHHHHTTTCCGGGEEEEECCTT
T ss_pred             EEEEeCcCcHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHH---------------HHHHHHhcCCCCCceEEEEccCC
Confidence            47788999999999999997 6788865 455432  11111               111111000 00011 1456788


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      .++...+.+..+.+.  ++.+++-..
T Consensus        68 ~~~~v~~~~~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          68 TEDGQDQIINSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCceEEEeCC
Confidence            888877777666654  688887553

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.21  Score=37.21  Aligned_cols=31  Identities=39%  Similarity=0.627  Sum_probs=25.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++.|.|+++++|+++++.+. ..|.+++. +++
T Consensus         9 ~~lITGas~GIG~aia~~la-~~G~~V~~-~~r   39 (244)
T d1pr9a_           9 RVLVTGAGKGIGRGTVQALH-ATGARVVA-VSR   39 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEEE-EEC
Confidence            68889999999999999997 67888664 554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.35  Score=37.12  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=49.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+.+++.+. ..|..++ +.++..  .+..+.              .+++...+.......   +..|.
T Consensus        14 valITGas~GIG~aia~~la-~~Ga~Vv-i~~r~~--~~l~~~--------------~~el~~~~~~~~~~~~~~~~~Dv   75 (297)
T d1yxma1          14 VAIVTGGATGIGKAIVKELL-ELGSNVV-IASRKL--ERLKSA--------------ADELQANLPPTKQARVIPIQCNI   75 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHHHHHTSCTTCCCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHHHHhhhccccCceEEEEeccC
Confidence            48889999999999999987 6689866 445431  111110              111111000001222   34577


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      |.++...+.+..+.+.  ++.+++-..
T Consensus        76 s~~~~v~~~~~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          76 RNEEEVNNLVKSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence            8888887777766653  578877554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.51  E-value=0.25  Score=36.58  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARG-MEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~-~eLvavv   67 (161)
                      .|.|.|+++++|+++++.+.+... ..+++..
T Consensus         5 tilITGassGIG~a~a~~la~~G~~~~Vi~~~   36 (250)
T d1yo6a1           5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATA   36 (250)
T ss_dssp             EEEESSCSSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEe
Confidence            478889999999999999985532 3555444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.49  E-value=0.24  Score=37.21  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE---EEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV---VIDf  113 (161)
                      .+.|.|+++++|+++++.+. ..|.+++....+..  ..+.               ...+.+.+    ...++   ..|.
T Consensus        20 ~~lITGas~GIG~aia~~la-~~Ga~Vvi~~~~~~--~~~~---------------~~~~~~~~----~g~~~~~~~~D~   77 (272)
T d1g0oa_          20 VALVTGAGRGIGREMAMELG-RRGCKVIVNYANST--ESAE---------------EVVAAIKK----NGSDAACVKANV   77 (272)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCH--HHHH---------------HHHHHHHH----TTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCch--HHHH---------------HHHHHHHh----hCCceeeEeCCC
Confidence            68889999999999999987 66898764433321  1111               11111221    23333   3477


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      +.++...+.+....+.  ++++++-..|
T Consensus        78 ~~~~~v~~~~~~~~~~~g~idilV~nag  105 (272)
T d1g0oa_          78 GVVEDIVRMFEEAVKIFGKLDIVCSNSG  105 (272)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCccccccc
Confidence            7888887777666554  6788877653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.46  E-value=0.22  Score=37.50  Aligned_cols=78  Identities=22%  Similarity=0.199  Sum_probs=46.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .+.|.|++++||+.+++.+. ..|++++ +.++..  .+..                  ++.+++.  ..+. +..|.+.
T Consensus         7 ~alVTGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~~~------------------~~~~~~~--~~~~~~~~Dv~~   62 (254)
T d1hdca_           7 TVIITGGARGLGAEAARQAV-AAGARVV-LADVLD--EEGA------------------ATARELG--DAARYQHLDVTI   62 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHH------------------HHHHTTG--GGEEEEECCTTC
T ss_pred             EEEEeCcCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHH------------------HHHHHhC--CceEEEEcccCC
Confidence            48899999999999999997 6689865 555432  1111                  1111100  0111 3456777


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      ++...+.+..+.+.  ++.+++-..
T Consensus        63 ~~~v~~~~~~~~~~~g~iDilVnnA   87 (254)
T d1hdca_          63 EEDWQRVVAYAREEFGSVDGLVNNA   87 (254)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCccEEEecC
Confidence            77776666655543  577776543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.23  Score=37.28  Aligned_cols=78  Identities=23%  Similarity=0.208  Sum_probs=46.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      .+.|.|+++.+|+.+++.+. ..|.+++. .+++.  ..+.+               +.+.+.     ...=+..|.|.+
T Consensus         8 ~alITGas~GIG~aia~~la-~~Ga~V~i-~~r~~--~~~~~---------------~~~~~~-----~~~~~~~Dvs~~   63 (250)
T d1ydea1           8 VVVVTGGGRGIGAGIVRAFV-NSGARVVI-CDKDE--SGGRA---------------LEQELP-----GAVFILCDVTQE   63 (250)
T ss_dssp             EEEEETCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHH---------------HHHHCT-----TEEEEECCTTSH
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHH---------------HHHhcC-----CCeEEEccCCCH
Confidence            47889999999999999987 66888664 55432  11111               111111     011144567777


Q ss_pred             hhHHHHHHHHHHc--CCcEEEeCC
Q 031341          117 STVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       117 ~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      +...+.+..+.+.  ++.+++-..
T Consensus        64 ~~v~~~~~~~~~~~g~iDilVnnA   87 (250)
T d1ydea1          64 DDVKTLVSETIRRFGRLDCVVNNA   87 (250)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEecc
Confidence            7776666655553  577776544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.35  E-value=0.25  Score=37.08  Aligned_cols=83  Identities=20%  Similarity=0.258  Sum_probs=46.7

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccCc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTDA  116 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~p  116 (161)
                      +.|.|+++++|+.+++.+. ..|.+++ +.+++.  .++.+.              .+++...-....++. +..|.|.+
T Consensus         8 alVTGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~~--------------~~~l~~~~~~~~~~~~~~~Dvt~~   69 (264)
T d1spxa_           8 AIITGSSNGIGRATAVLFA-REGAKVT-ITGRHA--ERLEET--------------RQQILAAGVSEQNVNSVVADVTTD   69 (264)
T ss_dssp             EEETTTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             EEEeCcCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHHHHhcCCCcCceEEEEccCCCH
Confidence            5677999999999999987 6789866 555432  111110              011111000000111 34577777


Q ss_pred             hhHHHHHHHHHHc--CCcEEEeCC
Q 031341          117 STVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       117 ~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      +...+.+..+.+.  ++.+++-..
T Consensus        70 ~~v~~~~~~~~~~~g~iDilvnnA   93 (264)
T d1spxa_          70 AGQDEILSTTLGKFGKLDILVNNA   93 (264)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCEeeccc
Confidence            7777777666554  577776554

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.29  E-value=0.08  Score=40.64  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=27.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      |-+|.|.|++|.+|+.+++.|. ..|.++.++.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~-~~g~~V~~~d   47 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLL-KLDQKVVGLD   47 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHH-HCcCEEEEEE
Confidence            3578889999999999999998 5588988754

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.25  E-value=0.03  Score=40.37  Aligned_cols=96  Identities=6%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             EEEE-cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hhcCCCCCCeeeeC-----CHHHHHhccc--ccCC
Q 031341           38 VIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCDMEQPLEIPVMS-----DLTMVLGSIS--QSKA  106 (161)
Q Consensus        38 V~Vi-Ga~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~---~~g~~~~~~i~v~~-----dl~~~l~~~~--~~~~  106 (161)
                      |.|+ |++|.+|...++... .-++++++++++...-.+..+   -+|..   .+..++     ++.+.+.++-  ....
T Consensus        32 vli~~ga~g~vG~~aiqlAk-~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          32 WFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             EEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCchHHHHHHHHHh-hcCCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHHHHHHHHHHhhccCC
Confidence            6775 778999999888665 669999999875321111111   11211   111111     1111111000  0136


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      +|+++|+...+...+.+......|.-+++|.
T Consensus       108 vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         108 AKLALNCVGGKSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCCcchhhhhhhhhcCCcEEEEECC
Confidence            8999999876665555554445555555564

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.23  E-value=0.23  Score=37.01  Aligned_cols=79  Identities=18%  Similarity=0.204  Sum_probs=46.7

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEcc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDfT  114 (161)
                      |.|.|+++++|+++++.+. ..|.+++....+..  ....+               +.+.+..    .+.+   +..|.+
T Consensus         4 ~lITGas~GIG~a~a~~la-~~Ga~V~i~~~~~~--~~~~~---------------~~~~~~~----~g~~~~~~~~Dv~   61 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLG-KAGCKVLVNYARSA--KAAEE---------------VSKQIEA----YGGQAITFGGDVS   61 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCH--HHHHH---------------HHHHHHH----HTCEEEEEECCTT
T ss_pred             EEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCH--HHHHH---------------HHHHHHH----cCCcEEEEeCCCC
Confidence            5677999999999999987 67898774444321  11111               1111111    1122   345677


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      .++...+.+..+.+.  ++.+++-..
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDiLVnnA   87 (244)
T d1edoa_          62 KEADVEAMMKTAIDAWGTIDVVVNNA   87 (244)
T ss_dssp             SHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCCCcccccc
Confidence            777777666665554  477776543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.07  E-value=0.12  Score=38.84  Aligned_cols=80  Identities=16%  Similarity=0.146  Sum_probs=46.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (161)
                      .+.|.|+++.+|+.+++.+. ..|.+++ +.+++.  ..+.+               +.+.+..    ...-+..|.+.+
T Consensus         8 ~alITGas~GIG~aia~~la-~~Ga~V~-~~~~~~--~~~~~---------------~~~~~~~----~~~~~~~Dv~~~   64 (253)
T d1hxha_           8 VALVTGGASGVGLEVVKLLL-GEGAKVA-FSDINE--AAGQQ---------------LAAELGE----RSMFVRHDVSSE   64 (253)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHH---------------HHHHHCT----TEEEECCCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHH---------------HHHHhCC----CeEEEEeecCCH
Confidence            46777999999999999987 6788865 555432  11111               1111110    111233567777


Q ss_pred             hhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          117 STVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       117 ~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      +...+.+..+.+.  ++.+++-..|
T Consensus        65 ~~~~~~~~~~~~~~g~iDilVnnAG   89 (253)
T d1hxha_          65 ADWTLVMAAVQRRLGTLNVLVNNAG   89 (253)
T ss_dssp             HHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCeEEeccc
Confidence            7776666655543  5777766543

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.06  E-value=0.083  Score=36.87  Aligned_cols=71  Identities=15%  Similarity=0.267  Sum_probs=42.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhc-CCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAV  109 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g--~~~~~~~g-~~~~~~i~v~~dl~~~l~~~~~~~~~DV  109 (161)
                      |||+|+|+ |++|..++-.+...+-+.=+..+|...   .|  .|+..... ......+...+|++++       .+.|+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~-------~~adi   72 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL-------KGSEI   72 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGG-------TTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHh-------ccccE
Confidence            79999996 999999999888666654344788432   11  12221111 1111234445677654       37898


Q ss_pred             EEEcc
Q 031341          110 VIDFT  114 (161)
Q Consensus       110 VIDfT  114 (161)
                      ||-..
T Consensus        73 Vvita   77 (142)
T d1ojua1          73 IVVTA   77 (142)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            88443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.93  E-value=0.62  Score=34.82  Aligned_cols=80  Identities=24%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++++|+.+++.+. ..|..++ +.+++.  ..+.+              ..+++...   ..+..   +..|.
T Consensus         6 ~alITGas~GIG~aia~~la-~~Ga~V~-i~~r~~--~~l~~--------------~~~~~~~~---~~~~~~~~~~~Dv   64 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLA-AEGAKLS-LVDVSS--EGLEA--------------SKAAVLET---APDAEVLTTVADV   64 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHH--------------HHHHHHHH---CTTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHH--------------HHHHHHhh---CCCCeEEEEeccC
Confidence            47788999999999999987 6788865 555432  11110              01111110   01222   34578


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYV  137 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigt  137 (161)
                      |.++...+.+..+.+.  ++.+++-.
T Consensus        65 t~~~~v~~~~~~~~~~~G~iDiLVnn   90 (258)
T d1iy8a_          65 SDEAQVEAYVTATTERFGRIDGFFNN   90 (258)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            8888887777666553  57777654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.86  E-value=0.17  Score=37.47  Aligned_cols=69  Identities=19%  Similarity=0.242  Sum_probs=42.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      ++.|.|+++++|+.+++.+. ..|.+++. .+++.  ..+.+ .+.. -.-.-+.++++++.+++   .++|++|...
T Consensus         6 ~~lVTGas~GIG~aia~~l~-~~Ga~V~~-~~r~~--~~l~~-~~~~-~~~~Dv~~~~~~~~~~~---g~iD~lVnnA   74 (234)
T d1o5ia_           6 GVLVLAASRGIGRAVADVLS-QEGAEVTI-CARNE--ELLKR-SGHR-YVVCDLRKDLDLLFEKV---KEVDILVLNA   74 (234)
T ss_dssp             EEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHH-TCSE-EEECCTTTCHHHHHHHS---CCCSEEEECC
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHh-cCCc-EEEcchHHHHHHHHHHh---CCCcEEEecc
Confidence            58999999999999999987 66898664 45431  11111 1110 00112235566666653   4799988643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.32  Score=36.32  Aligned_cols=82  Identities=20%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEcc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDfT  114 (161)
                      +.|.|+++++|+.+++.+. ..|.+++. .+++.  .+..+.              .+++.+.   .....   +..|.|
T Consensus         6 alITGas~GIG~aia~~la-~~Ga~V~i-~~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~~~Dv~   64 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALL-LKGAKVAL-VDWNL--EAGVQC--------------KAALHEQ---FEPQKTLFIQCDVA   64 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH--------------HHHHTTT---SCGGGEEEEECCTT
T ss_pred             EEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH--------------HHHHHHh---cCCCcEEEEEeecC
Confidence            6677999999999999997 67888664 45431  111100              0111100   00111   335777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCCC
Q 031341          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (161)
Q Consensus       115 ~p~~~~~~~~~al~~--g~~vVigttg~  140 (161)
                      .++...+.+..+.+.  ++.+++-..|.
T Consensus        65 ~~~~v~~~~~~~~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          65 DQQQLRDTFRKVVDHFGRLDILVNNAGV   92 (254)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCcCeecccccc
Confidence            777777666655543  57777766543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.82  E-value=0.23  Score=37.17  Aligned_cols=81  Identities=22%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (161)
                      .+.|.|+++.+|+++++.+. ..|.+++...++...  ...               ...+.+..    .+.+   +..|+
T Consensus         8 ~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~~--~~~---------------~~~~~~~~----~g~~~~~~~~D~   65 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSSK--AAE---------------EVVAELKK----LGAQGVAIQADI   65 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH--HHH---------------HHHHHHHH----TTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCChH--HHH---------------HHHHHHHH----cCCCceEecCCC
Confidence            47899999999999999987 778998755554321  110               11111211    2223   34577


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      +.++...+.+..+.+.  ++.+++-..|
T Consensus        66 ~~~~~v~~~~~~~~~~~g~idilinnag   93 (259)
T d1ja9a_          66 SKPSEVVALFDKAVSHFGGLDFVMSNSG   93 (259)
T ss_dssp             TSHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEeccc
Confidence            7777776666544443  4666665543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.21  Score=35.57  Aligned_cols=33  Identities=12%  Similarity=0.110  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -+|.|+|+ |.+||.++..+... +..-+-+++++
T Consensus        19 k~vlIlGa-GGaarai~~al~~~-g~~~i~i~nR~   51 (182)
T d1vi2a1          19 KTMVLLGA-GGASTAIGAQGAIE-GLKEIKLFNRR   51 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CEEEEECC-cHHHHHHHHHHhhc-CCceEeeeccc
Confidence            58999995 99999999988854 67667777764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.63  E-value=0.47  Score=35.14  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=46.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcE------EEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGME------VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---  108 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~e------Lvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---  108 (161)
                      |.|.|+++++|+.+++.+.+ .|.+      .+..+++..  .++.+               +.+.+..    ....   
T Consensus         4 vlITGas~GIG~aia~~la~-~G~~~~~~~~~v~~~~r~~--~~l~~---------------~~~~~~~----~g~~~~~   61 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFAR-AARHHPDFEPVLVLSSRTA--ADLEK---------------ISLECRA----EGALTDT   61 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-HTTTCTTCCEEEEEEESCH--HHHHH---------------HHHHHHT----TTCEEEE
T ss_pred             EEEccCCCHHHHHHHHHHHH-hCccccccCcEEEEEeCCH--HHHHH---------------HHHHHHh----cCCcEEE
Confidence            46789999999999999874 4443      344555432  11111               1111111    1222   


Q ss_pred             EEEEccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          109 VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      +..|.|.++...+.+..+.+.  ++.+++-..|
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          62 ITADISDMADVRRLTTHIVERYGHIDCLVNNAG   94 (240)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHHHcCCcceeecccc
Confidence            345778888777777666554  5777775543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.62  E-value=0.11  Score=40.82  Aligned_cols=89  Identities=10%  Similarity=-0.083  Sum_probs=55.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (161)
                      -+++|+| +|..++.+++.+.....++=+-++++...  +...+.......++.+..+.+++..      ++|+|+=+| 
T Consensus       126 ~~l~iiG-aG~QA~~~~~al~~~~~i~~i~v~~r~~e--~~~~~~~~~~~~~~~~~~~~~~a~~------~aDiV~taT-  195 (320)
T d1omoa_         126 SVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVREK--AAKKFVSYCEDRGISASVQPAEEAS------RCDVLVTTT-  195 (320)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSHH--HHHHHHHHHHHTTCCEEECCHHHHT------SSSEEEECC-
T ss_pred             cEEEEec-CcccHHHHHHHHHHHhhhhhcccccCCHH--HHHHHHHHHHhcCCccccchhhhhc------cccEEEEec-
Confidence            5799999 59999999999998777887888886431  2111211111234555556677664      799998554 


Q ss_pred             chhHHHHHHHHHHcCCcEE
Q 031341          116 ASTVYDNVKQATAFGMRSV  134 (161)
Q Consensus       116 p~~~~~~~~~al~~g~~vV  134 (161)
                      |....-.-...++.|.|+.
T Consensus       196 ~s~~P~~~~~~l~~G~hv~  214 (320)
T d1omoa_         196 PSRKPVVKAEWVEEGTHIN  214 (320)
T ss_dssp             CCSSCCBCGGGCCTTCEEE
T ss_pred             cCcccccchhhcCCCCeEe
Confidence            3222111123467888876

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.41  E-value=0.22  Score=37.76  Aligned_cols=84  Identities=24%  Similarity=0.290  Sum_probs=48.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++ +.+++.  .++.+.              .+++...-....++. +..|.|.
T Consensus         6 ~alITGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~~--------------~~~i~~~~~~~~~~~~~~~Dv~~   67 (274)
T d1xhla_           6 SVIITGSSNGIGRSAAVIFA-KEGAQVT-ITGRNE--DRLEET--------------KQQILKAGVPAEKINAVVADVTE   67 (274)
T ss_dssp             EEEETTCSSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHHHHHTTCCGGGEEEEECCTTS
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHHHHHcCCCCcceEEEEeeCCC
Confidence            47899999999999999997 6788866 455432  111110              011111000000111 4567888


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      ++...+.+..+.+.  ++.+++-..
T Consensus        68 ~~~v~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          68 ASGQDDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCceEEEeec
Confidence            88887777666654  577777543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.39  E-value=0.19  Score=35.90  Aligned_cols=91  Identities=8%  Similarity=0.121  Sum_probs=50.1

Q ss_pred             CCeeEEEEcCCCHHHHH--HHHHHHhcCCc--EEEEEEecCCC-----CcchhhhhcC-CCCCCeeeeCCHHHHHhcccc
Q 031341           34 SNIKVIINGAVKEIGRA--AVIAVTKARGM--EVAGAIDSHSV-----GEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQ  103 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~--i~~~l~~~~~~--eLvavvd~~~~-----g~~~~~~~g~-~~~~~i~v~~dl~~~l~~~~~  103 (161)
                      +.+||+|+|+ |..|..  +...+...+++  .=+..+|.+..     +.+....... ..+..+..++|.++++.    
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~----   76 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT----   76 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS----
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC----
Confidence            4589999996 766543  44555556665  22457884321     1111111111 01345566789999885    


Q ss_pred             cCCccEEEEccCchh--H-HHHHHHHHHcCC
Q 031341          104 SKARAVVIDFTDAST--V-YDNVKQATAFGM  131 (161)
Q Consensus       104 ~~~~DVVIDfT~p~~--~-~~~~~~al~~g~  131 (161)
                        ++|+||...-+..  . ...-+...++|+
T Consensus        77 --~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          77 --DVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             --SCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             --CCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence              8999996553321  2 223344566666

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.18  Score=37.92  Aligned_cols=84  Identities=17%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             eeEE-EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEc
Q 031341           36 IKVI-INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (161)
Q Consensus        36 ikV~-ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (161)
                      .||+ |.|+++++|+++++.+.+..+..++....+...++...                 +++-..   ..++. +..|.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~-----------------~~l~~~---~~~~~~~~~Dv   62 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAV-----------------QQLQAE---GLSPRFHQLDI   62 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHH-----------------HHHHHT---TCCCEEEECCT
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------------HHHHhc---CCcEEEEEEec
Confidence            5785 67999999999999998777887664443211111111                 111110   01222 34577


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031341          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (161)
Q Consensus       114 T~p~~~~~~~~~al~~--g~~vVigttg  139 (161)
                      +.++...+.+..+.+.  ++++++-..|
T Consensus        63 s~~~sv~~~~~~~~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          63 DDLQSIRALRDFLRKEYGGLDVLVNNAG   90 (275)
T ss_dssp             TCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            8777777666555543  5777775543

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.04  E-value=0.59  Score=32.99  Aligned_cols=73  Identities=16%  Similarity=0.085  Sum_probs=42.7

Q ss_pred             CeeEEEEcCCC--HHHHHHHHHHHhcCCcE--EEEEEecCCC---Ccchhh-----hhcCCCCCCeeeeCCHHHHHhccc
Q 031341           35 NIKVIINGAVK--EIGRAAVIAVTKARGME--VAGAIDSHSV---GEDIGM-----VCDMEQPLEIPVMSDLTMVLGSIS  102 (161)
Q Consensus        35 ~ikV~ViGa~G--~mGr~i~~~l~~~~~~e--Lvavvd~~~~---g~~~~~-----~~g~~~~~~i~v~~dl~~~l~~~~  102 (161)
                      ++||.|+|| |  +.+..++..+...+.+.  =+..+|.+..   ++....     +.+...+..+..++|..+.+.   
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~---   76 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALD---   76 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT---
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcC---
Confidence            489999996 7  45567777777666542  3457774321   110000     111111234455788888885   


Q ss_pred             ccCCccEEEEcc
Q 031341          103 QSKARAVVIDFT  114 (161)
Q Consensus       103 ~~~~~DVVIDfT  114 (161)
                         +.|+||...
T Consensus        77 ---gaDvVv~ta   85 (169)
T d1s6ya1          77 ---GADFVTTQF   85 (169)
T ss_dssp             ---TCSEEEECC
T ss_pred             ---CCCEEEEcc
Confidence               899999555

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.98  E-value=0.18  Score=38.27  Aligned_cols=78  Identities=22%  Similarity=0.273  Sum_probs=47.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (161)
                      .+.|.|+++++|+++++.+. ..|.+++. .+++.  .++.++               .+.+.     .++. +..|.+.
T Consensus         7 ~alITGas~GIG~aia~~la-~~Ga~V~i-~~r~~--~~l~~~---------------~~~~~-----~~~~~~~~Dv~~   62 (276)
T d1bdba_           7 AVLITGGASGLGRALVDRFV-AEGAKVAV-LDKSA--ERLAEL---------------ETDHG-----DNVLGIVGDVRS   62 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH---------------HHHHG-----GGEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH---------------HHHcC-----CCeeEEeccccc
Confidence            47888999999999999987 66898764 45431  111111               11111     1122 3457777


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCC
Q 031341          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (161)
Q Consensus       116 p~~~~~~~~~al~~--g~~vVigtt  138 (161)
                      ++...+.+..+.+.  ++.+++-..
T Consensus        63 ~~~~~~~~~~~~~~~g~idilvnnA   87 (276)
T d1bdba_          63 LEDQKQAASRCVARFGKIDTLIPNA   87 (276)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCcccccccc
Confidence            77776666655554  577776443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=90.77  E-value=0.19  Score=40.09  Aligned_cols=90  Identities=14%  Similarity=0.093  Sum_probs=58.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVID  112 (161)
                      -+++|+| +|..++..++.+....+++=+-+++++... ....+.+.  ...|  +.+.+|+++++.      .+|+|+=
T Consensus       129 ~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~--~~~g~~v~~~~s~~eav~------~ADIi~t  199 (340)
T d1x7da_         129 RKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK--EYSGLTIRRASSVAEAVK------GVDIITT  199 (340)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT--TCTTCEEEECSSHHHHHT------TCSEEEE
T ss_pred             ceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh--hccCCCceecCCHHHHHh------cCCceee
Confidence            3799999 599999999999888888888899865311 11111111  1234  455799999985      7999886


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEE
Q 031341          113 FTDASTVYDNV-KQATAFGMRSV  134 (161)
Q Consensus       113 fT~p~~~~~~~-~~al~~g~~vV  134 (161)
                      +|......+.+ ...++.|.|+.
T Consensus       200 ~Tas~s~~Pv~~~~~l~pG~hI~  222 (340)
T d1x7da_         200 VTADKAYATIITPDMLEPGMHLN  222 (340)
T ss_dssp             CCCCSSEEEEECGGGCCTTCEEE
T ss_pred             ccccCCCCcccchhhcCCCCEEe
Confidence            56322111111 23467788875

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.75  E-value=0.15  Score=37.49  Aligned_cols=31  Identities=26%  Similarity=0.484  Sum_probs=24.9

Q ss_pred             eeE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           36 IKV-IINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        36 ikV-~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      ||| .|.|+++++|+.+++.+. ..|.+++...
T Consensus         1 mkVvlITGas~GIG~aiA~~la-~~Ga~V~~~~   32 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLE-AAGHQIVGID   32 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEE
Confidence            455 677999999999999997 6699976543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.66  E-value=0.11  Score=38.88  Aligned_cols=30  Identities=37%  Similarity=0.566  Sum_probs=25.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      ++.|.|+++.+|+.+++.+. ..|.+++...
T Consensus         7 ~alITGas~GIG~aia~~la-~~Ga~V~~~~   36 (242)
T d1cyda_           7 RALVTGAGKGIGRDTVKALH-ASGAKVVAVT   36 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEE
Confidence            57889999999999999987 6789877554

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=0.012  Score=42.70  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCH--HHHHhcccccCCccEEEEcc
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl--~~~l~~~~~~~~~DVVIDfT  114 (161)
                      .|.|.|++|..|...++... .-|.++++++.++.. .+....+|..   .+.-+++.  .+.+.    ....|.++|+.
T Consensus        34 ~vlV~gasGGVG~~aiQlAk-~~Ga~Via~~~~~~k-~~~~~~lGad---~vi~~~~~~~~~~l~----~~~~~~vvD~V  104 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLH-KLGYQVVAVSGREST-HEYLKSLGAS---RVLPRDEFAESRPLE----KQVWAGAIDTV  104 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCGGG-HHHHHHHTEE---EEEEGGGSSSCCSSC----CCCEEEEEESS
T ss_pred             cEEEEEccccchHHHHHHHH-HcCCCeEEEecchhH-HHHHHhhccc---cccccccHHHHHHHH----hhcCCeeEEEc
Confidence            58999999999999888664 679999988875321 2222222221   11112221  11222    24578999987


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeC
Q 031341          115 DASTVYDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       115 ~p~~~~~~~~~al~~g~~vVigt  137 (161)
                      --+...+.+......|.=+.+|.
T Consensus       105 gg~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         105 GDKVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             chHHHHHHHHHhccccceEeecc
Confidence            55444444444444444444543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.57  E-value=0.07  Score=38.10  Aligned_cols=33  Identities=12%  Similarity=0.244  Sum_probs=25.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      .-+|.|+| +|+++|.++..+.+ ..-++. ++.|+
T Consensus        18 ~k~vlIlG-aGGaarai~~aL~~-~~~~i~-I~nR~   50 (171)
T d1p77a1          18 NQHVLILG-AGGATKGVLLPLLQ-AQQNIV-LANRT   50 (171)
T ss_dssp             TCEEEEEC-CSHHHHTTHHHHHH-TTCEEE-EEESS
T ss_pred             CCEEEEEC-CcHHHHHHHHHHcc-cCceee-eccch
Confidence            35799999 49999999999875 445655 66654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.3  Score=33.37  Aligned_cols=29  Identities=17%  Similarity=0.323  Sum_probs=23.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      +|.|+| .|++|+.+++.+.+ .+.+++.+-
T Consensus         5 HiII~G-~g~~g~~l~~~L~~-~~~~v~vId   33 (153)
T d1id1a_           5 HFIVCG-HSILAINTILQLNQ-RGQNVTVIS   33 (153)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             EEEEEC-CCHHHHHHHHHHHH-cCCCEEEEe
Confidence            589999 59999999999975 467766443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.088  Score=39.48  Aligned_cols=31  Identities=29%  Similarity=0.413  Sum_probs=25.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+.|.|+++++|+++++.+. ..|.+++.+..
T Consensus         8 ~alITGas~GIG~aia~~la-~~G~~Vi~~~r   38 (245)
T d2ag5a1           8 VIILTAAAQGIGQAAALAFA-REGAKVIATDI   38 (245)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeC
Confidence            37778999999999999997 55899876654

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=90.00  E-value=0.56  Score=31.21  Aligned_cols=86  Identities=13%  Similarity=0.124  Sum_probs=52.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCC--CCcc-hhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341           36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHS--VGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~--~g~~-~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI  111 (161)
                      |||+|.= ||--|-.+++.+. ..|+.+++.+.|...  -|.+ ..++.        .....+.+.+.    +.++|.+|
T Consensus         1 mkIgifD-SGiGGLtVl~~l~~~lP~~~~iY~~D~a~~PYG~ks~~~I~--------~~~~~~~~~l~----~~~~~~iV   67 (105)
T d1b74a1           1 MKIGIFD-SGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTII--------RYSLECAGFLK----DKGVDIIV   67 (105)
T ss_dssp             CEEEEEE-SSSTHHHHHHHHHHHSSSCEEEEEECGGGCCGGGSCHHHHH--------HHHHHHHHHHH----TTTCSEEE
T ss_pred             CEEEEEe-CCCCHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHH--------HHHHHHHHHHH----HcCCCEEE
Confidence            6899998 7999999999887 579999999999532  2221 11111        01112223333    36899888


Q ss_pred             EccCchhH--HHHHHHHHHcCCcEEEeC
Q 031341          112 DFTDASTV--YDNVKQATAFGMRSVVYV  137 (161)
Q Consensus       112 DfT~p~~~--~~~~~~al~~g~~vVigt  137 (161)
                      -+.+..+.  .+.++  -+..+|+ +|.
T Consensus        68 iACNTaS~~al~~lr--~~~~~Pi-iGv   92 (105)
T d1b74a1          68 VACNTASAYALERLK--KEINVPV-FGV   92 (105)
T ss_dssp             ECCHHHHHHHHHHHH--HHSSSCE-EES
T ss_pred             EecCcHHHHHHHHHH--HHCCCCE-EEe
Confidence            77754433  34444  3457775 554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.94  E-value=0.21  Score=37.46  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=28.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      .|.|.|+++++|+++++.+. ..|.+++.+.++.
T Consensus         7 ~vlITGgs~GIG~~~A~~la-~~G~~vii~~r~~   39 (254)
T d1sbya1           7 NVIFVAALGGIGLDTSRELV-KRNLKNFVILDRV   39 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESS
T ss_pred             EEEEecCCCHHHHHHHHHHH-HCCCEEEEEECCc
Confidence            48899999999999999997 6688888777754

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.13  Score=37.81  Aligned_cols=32  Identities=16%  Similarity=0.363  Sum_probs=28.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |||+++| ++.+|...++.|.+ .++++++|+.+
T Consensus         1 Mkiv~~~-~~~~g~~~l~~L~~-~g~~I~~Vvt~   32 (203)
T d2blna2           1 MKTVVFA-YHDMGCLGIEALLA-AGYEISAIFTH   32 (203)
T ss_dssp             CEEEEEE-CHHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CeEEEEe-cCHHHHHHHHHHHH-CCCCEEEEEcC
Confidence            7999999 69999999999984 58999999963

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.36  E-value=1.4  Score=30.91  Aligned_cols=106  Identities=8%  Similarity=0.079  Sum_probs=65.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (161)
                      +=+|+++.=+|.++..++..+. ..++-+.-++..-.             +.+    .++.++++.+.++++..+++-+-
T Consensus        20 ~G~valiSqSG~l~~~~~~~~~-~~g~G~s~~vs~Gn-------------~~~----~~~~d~l~~l~~D~~t~~i~l~~   81 (161)
T d2csua2          20 KGNVAFISQSGALGAGIVYKTI-KEDIGFSKFISVGN-------------MAD----VDFAELMEYLADTEEDKAIALYI   81 (161)
T ss_dssp             ECSEEEEESCHHHHHHHHHHHH-HTTCEESEEEECTT-------------CCS----SCHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHH-hCCCCeeEEEecCC-------------ccc----cCHHHHHHHHhcCCCCcEEEEEe
Confidence            3479999999999999988775 55776665665211             111    13444444444456677766543


Q ss_pred             ----CchhHHHHHHHHHHcCCcEEEeCCCCCH--------------HHHHHHHHHhhhcCeee
Q 031341          115 ----DASTVYDNVKQATAFGMRSVVYVPHIQL--------------ETVSALSAFCDKASMVS  159 (161)
Q Consensus       115 ----~p~~~~~~~~~al~~g~~vVigttg~~~--------------e~~~~L~~~A~~~~Vv~  159 (161)
                          .|....+.++++. .+||+|+-+.|-++              ...+...++.++.+|+.
T Consensus        82 E~~~~~~~f~~~~r~~~-~~Kpvv~~k~G~s~~g~~aa~sHtga~ag~~~~~~a~~~~aGvi~  143 (161)
T d2csua2          82 EGVRNGKKFMEVAKRVT-KKKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLV  143 (161)
T ss_dssp             SCCSCHHHHHHHHHHHH-HHSCEEEEECC------------------CHHHHHHHHHHTTCEE
T ss_pred             cCCcCHHHHHHHHHHHh-ccCCeeEEEeecccccccccccccccccccHHHHHHHHHHCCceE
Confidence                6777777777764 56899876654322              12234566777777764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.98  E-value=0.44  Score=35.22  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=25.0

Q ss_pred             eEEEEcCCC--HHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVK--EIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G--~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++.|.|++|  ++|+++++.+. ..|.+++ +.++
T Consensus        10 ~alITGas~~~GIG~aiA~~la-~~Ga~V~-i~~~   42 (256)
T d1ulua_          10 KALVMGVTNQRSLGFAIAAKLK-EAGAEVA-LSYQ   42 (256)
T ss_dssp             EEEEESCCCSSSHHHHHHHHHH-HTTCEEE-EEES
T ss_pred             EEEEECCCCCchHHHHHHHHHH-HCCCEEE-EEeC
Confidence            488999887  79999999997 6689975 5554

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.30  E-value=0.35  Score=33.96  Aligned_cols=73  Identities=5%  Similarity=-0.005  Sum_probs=39.2

Q ss_pred             eeEEEEcCCCHHHHHHH--HHHHhcCC--cEEEEEEecCCCC-cchhhhhc--CCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341           36 IKVIINGAVKEIGRAAV--IAVTKARG--MEVAGAIDSHSVG-EDIGMVCD--MEQPLEIPVMSDLTMVLGSISQSKARA  108 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~--~~l~~~~~--~eLvavvd~~~~g-~~~~~~~g--~~~~~~i~v~~dl~~~l~~~~~~~~~D  108 (161)
                      |||+|+|+ |..|...+  ..+...++  ..=+..+|.+... ....++..  ......+.++++.++.++      ++|
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~------~aD   73 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVV------DAK   73 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHT------TCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccC------CCC
Confidence            79999996 86664443  22333333  2235588853210 01111100  001345666788888885      899


Q ss_pred             EEEEccC
Q 031341          109 VVIDFTD  115 (161)
Q Consensus       109 VVIDfT~  115 (161)
                      +||-...
T Consensus        74 vVVita~   80 (162)
T d1up7a1          74 YVIFQFR   80 (162)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            9885443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.11  E-value=0.35  Score=35.91  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=25.7

Q ss_pred             eEEEE-cCCCHHHHHHHHHHHh--cCCcEEEEEEe
Q 031341           37 KVIIN-GAVKEIGRAAVIAVTK--ARGMEVAGAID   68 (161)
Q Consensus        37 kV~Vi-Ga~G~mGr~i~~~l~~--~~~~eLvavvd   68 (161)
                      ||+|+ |+++++|+.+++.+.+  .+|..++....
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r   41 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSAR   41 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEEC
Confidence            56666 9999999999999976  47898885543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.03  E-value=0.44  Score=33.29  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=26.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      +.||.|+|+ |+.|+.++-.+...+=.||+ .+|..
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~-L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIV   36 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEE-EEecc
Confidence            469999995 99999999877765545655 88853

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.90  E-value=0.41  Score=36.07  Aligned_cols=31  Identities=16%  Similarity=0.247  Sum_probs=25.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      .+.|.|++|++|+.+++.+. ..|.+++....
T Consensus        27 ~alITGas~GIG~aiA~~la-~~Ga~Vii~~r   57 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLS-SLGAQCVIASR   57 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEEEEEC
Confidence            37788999999999999987 67899775443

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=87.88  E-value=0.31  Score=36.16  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=26.2

Q ss_pred             eeEEEE-cCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           36 IKVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        36 ikV~Vi-Ga~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +.|+|+ |+++++|+++++.+. ..|.+++....+
T Consensus         2 ~pVAlITGas~GIG~aiA~~la-~~Ga~V~i~~~~   35 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLH-AEGYAVCLHYHR   35 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCC
Confidence            456655 999999999999987 678998765554

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.81  E-value=0.78  Score=30.32  Aligned_cols=100  Identities=14%  Similarity=0.068  Sum_probs=50.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCH--HHHHhcccccCCccEEEEcc
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVIDFT  114 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl--~~~l~~~~~~~~~DVVIDfT  114 (161)
                      |.|+| .|++|+.+++.+...   +++ +++.+..  ......    ..++.+ +.|.  .+.|.+ +.-.+++.+|-.+
T Consensus         3 ivI~G-~g~~g~~l~~~L~~~---~i~-vi~~d~~--~~~~~~----~~~~~~i~Gd~~~~~~L~~-a~i~~A~~vi~~~   70 (129)
T d2fy8a1           3 VVICG-WSESTLECLRELRGS---EVF-VLAEDEN--VRKKVL----RSGANFVHGDPTRVSDLEK-ANVRGARAVIVNL   70 (129)
T ss_dssp             EEEES-CCHHHHHHHHTSCGG---GEE-EEESCTT--HHHHHH----HTTCEEEESCTTSHHHHHH-TTCTTCSEEEECC
T ss_pred             EEEEC-CCHHHHHHHHHHcCC---CCE-EEEcchH--HHHHHH----hcCccccccccCCHHHHHH-hhhhcCcEEEEec
Confidence            78999 699999999987533   444 5564321  111111    234433 3332  233322 0114677888444


Q ss_pred             CchhH-HHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHH
Q 031341          115 DASTV-YDNVKQATA--FGMRSVVYVPHIQLETVSALSAF  151 (161)
Q Consensus       115 ~p~~~-~~~~~~al~--~g~~vVigttg~~~e~~~~L~~~  151 (161)
                      .-+.. ...+..+.+  ...++++-.  .+++..+.|.++
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~  108 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEA--ERYENIEQLRMA  108 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEEC--SSGGGHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEE--cCHHHHHHHHHC
Confidence            33322 222233333  345666644  455666666665

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=86.27  E-value=0.57  Score=33.85  Aligned_cols=35  Identities=17%  Similarity=0.394  Sum_probs=30.0

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      +++|||+++| ++..+..+++.|.+ .+.++++|+..
T Consensus         1 ~~~mKI~f~G-~~~~~~~~L~~L~~-~~~~i~~Vit~   35 (206)
T d1fmta2           1 SESLRIIFAG-TPDFAARHLDALLS-SGHNVVGVFTQ   35 (206)
T ss_dssp             CCCCEEEEEE-CSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCcEEEEEC-CCHHHHHHHHHHHh-CCCCEEEEEeC
Confidence            4679999999 79999999998874 58999999963

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.59  E-value=0.51  Score=33.16  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=25.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEe
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAID   68 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd   68 (161)
                      |||.|+|+ |..|-+++..+.+ .++.++. +++
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~-v~~   32 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQ-WYE   32 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEE-EEE
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEE-EEe
Confidence            79999995 9999999999875 4777876 444

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=0.51  Score=34.57  Aligned_cols=30  Identities=17%  Similarity=0.201  Sum_probs=25.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      +.|.|+++++|+.+++.+. ..|++++.+..
T Consensus         8 alITGas~GIG~aia~~la-~~G~~V~~~~r   37 (248)
T d2o23a1           8 AVITGGASGLGLATAERLV-GQGASAVLLDL   37 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTCEEEEEEC
T ss_pred             EEEeCCCCHHHHHHHHHHH-HCCCEEEEEeC
Confidence            5789999999999999997 67899765443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.03  E-value=0.41  Score=34.47  Aligned_cols=30  Identities=33%  Similarity=0.537  Sum_probs=24.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavv   67 (161)
                      .+.|.|+++++|+.+++.+. ..|.+++...
T Consensus         3 ~alITGas~GIG~aiA~~la-~~Ga~V~i~~   32 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALK-ARGYRVVVLD   32 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HHTCEEEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEEEE
Confidence            36778999999999999997 5688876443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.74  E-value=0.43  Score=35.72  Aligned_cols=31  Identities=35%  Similarity=0.475  Sum_probs=26.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      ++.|.|+++++|+.+++.+. ..|.+|+.+..
T Consensus        16 ~alITGassGIG~aiA~~la-~~G~~Vil~~r   46 (269)
T d1xu9a_          16 KVIVTGASKGIGREMAYHLA-KMGAHVVVTAR   46 (269)
T ss_dssp             EEEESSCSSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEEC
Confidence            58899999999999999998 56898776554

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=84.68  E-value=0.7  Score=33.92  Aligned_cols=32  Identities=13%  Similarity=0.225  Sum_probs=24.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      -+.|.|++|.+|+.+++.+.+. +..-+.++.+
T Consensus        11 t~lVTGgs~GIG~a~a~~la~~-Ga~~vvl~~R   42 (259)
T d2fr1a1          11 TVLVTGGTGGVGGQIARWLARR-GAPHLLLVSR   42 (259)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-TCSEEEEEES
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeC
Confidence            4899999999999999999854 5532334443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.50  E-value=0.74  Score=28.89  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      |-+|+|+| +|..||+++.... .=|+++. ++|+
T Consensus         1 ~k~vgIlG-~GQLgrMl~~Aa~-~LG~~v~-vldp   32 (78)
T d3etja2           1 MKQVCVLG-NGQLGRMLRQAGE-PLGIAVW-PVGL   32 (78)
T ss_dssp             CEEEEEEB-CSHHHHHHHHHHG-GGTEEEE-EECT
T ss_pred             CCEEEEEc-CCHHHHHHHHHHH-HcCCEEE-EEcC
Confidence            45899999 5999999998776 4478765 5554

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=84.42  E-value=1.9  Score=32.36  Aligned_cols=67  Identities=13%  Similarity=0.065  Sum_probs=42.7

Q ss_pred             CCCeeeeCCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCC--cEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASM  157 (161)
Q Consensus        85 ~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~--~vVigttg~~~e~~~~L~~~A~~~~V  157 (161)
                      +.|+.+++|..++.+      ++|+||-+.+ ++...+.+....++-.  .+|+-++..+.....++.+..++.++
T Consensus       126 e~Gv~v~~d~~Eav~------~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi  195 (242)
T d2b0ja2         126 DVGLKVTSDDREAVE------GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL  195 (242)
T ss_dssp             GGTCEEESCHHHHHT------TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTS
T ss_pred             HCCCEEECCHHHHHh------cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCC
Confidence            356788899999985      8999995553 3334455544443322  25554544667777888777776654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.32  E-value=0.5  Score=29.50  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=28.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~   70 (161)
                      -+|.|.|++|.+|...++.+. .-++++++...++
T Consensus        33 ~~vlI~gasGgVG~~aiQlak-~~G~~Vi~~t~s~   66 (77)
T d1o8ca2          33 GEIVVTGASGGVGSTAVALLH-KLGYQVVAVSGRE   66 (77)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCG
T ss_pred             CcEEEEeCCCcHHHHHHHHHH-HcCCeEEEEECCH
Confidence            579999999999999988654 6799998888753

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=83.07  E-value=0.64  Score=33.28  Aligned_cols=105  Identities=17%  Similarity=0.153  Sum_probs=59.8

Q ss_pred             eeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCC
Q 031341           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (161)
Q Consensus        27 ~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~  106 (161)
                      +.++---.--++.|+| +|..||.+++.+... +.. |-|++.++. +.+...     -.|..+ .++++++.      .
T Consensus        15 r~t~~~laGk~vvV~G-YG~vGrG~A~~~rg~-Ga~-V~V~E~DPi-~alqA~-----mdGf~v-~~~~~a~~------~   78 (163)
T d1v8ba1          15 RATDFLISGKIVVICG-YGDVGKGCASSMKGL-GAR-VYITEIDPI-CAIQAV-----MEGFNV-VTLDEIVD------K   78 (163)
T ss_dssp             HHHCCCCTTSEEEEEC-CSHHHHHHHHHHHHH-TCE-EEEECSCHH-HHHHHH-----TTTCEE-CCHHHHTT------T
T ss_pred             HHhCceecCCEEEEec-ccccchhHHHHHHhC-CCE-EEEEecCch-hhHHHH-----hcCCcc-CchhHccc------c
Confidence            3444333335899999 899999999998754 554 446664321 111111     124454 58888885      7


Q ss_pred             ccEEEEcc-CchhH-HHHHHHHHHcCCcEEEeCCC-CCHH-HHHHHHH
Q 031341          107 RAVVIDFT-DASTV-YDNVKQATAFGMRSVVYVPH-IQLE-TVSALSA  150 (161)
Q Consensus       107 ~DVVIDfT-~p~~~-~~~~~~al~~g~~vVigttg-~~~e-~~~~L~~  150 (161)
                      .|++|=.| .++.. .++.+ .++.|  .|+...| |+.| +.+.|.+
T Consensus        79 aDi~vTaTGn~~vI~~~h~~-~MKdg--aIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          79 GDFFITCTGNVDVIKLEHLL-KMKNN--AVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             CSEEEECCSSSSSBCHHHHT-TCCTT--CEEEECSSTTTSBCHHHHHT
T ss_pred             CcEEEEcCCCCccccHHHHH-HhhCC--eEEEeccccchhhhhHHHHh
Confidence            99999666 33433 44444 34444  3455544 5433 3445544

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.53  E-value=0.4  Score=35.66  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=24.4

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ..|.|+++.+|+.+++.+. ..|.+++ +.++
T Consensus         3 AlVTGas~GiG~aiA~~la-~~Ga~V~-i~~r   32 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLS-EAGHTVA-CHDE   32 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHH-HTTCEEE-ECCG
T ss_pred             EEEECCCCHHHHHHHHHHH-HCCCEEE-EEEC
Confidence            5789999999999999887 6788865 4554

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=81.26  E-value=2.9  Score=30.18  Aligned_cols=103  Identities=16%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCC-------------CCcchhhhhcCCCCCC---eeeeCCHHHH
Q 031341           36 IKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHS-------------VGEDIGMVCDMEQPLE---IPVMSDLTMV   97 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~-------------~g~~~~~~~g~~~~~~---i~v~~dl~~~   97 (161)
                      |||-|+|. |..|..++..+.+  .++.+.++ ++.+.             .|.+...-.|......   -....+.+++
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~ia-inTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~~~I   78 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVA-VNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKI   78 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEE-EESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHHHH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEE-EcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHHHHH
Confidence            68999995 9999999998875  35667654 33210             1111111111100000   0112334443


Q ss_pred             HhcccccCCccEEEEccC-----chhH-HHHHHHHHHcCCcEE-EeCCCCCHH
Q 031341           98 LGSISQSKARAVVIDFTD-----ASTV-YDNVKQATAFGMRSV-VYVPHIQLE  143 (161)
Q Consensus        98 l~~~~~~~~~DVVIDfT~-----p~~~-~~~~~~al~~g~~vV-igttg~~~e  143 (161)
                      ...+   .+.|+|+..+-     -... ...++.|.+.|+.+| +.|..|+.|
T Consensus        79 ~~~l---~~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv~ivtlPF~~E  128 (194)
T d1w5fa1          79 REVL---QDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFE  128 (194)
T ss_dssp             HHHT---TTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGG
T ss_pred             HHHh---cCCCeEEEEEecCCCcccchHHHHHHHHHHcCCceEEEEeechhhh
Confidence            2222   47898886652     2233 346678888998876 334445543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=81.23  E-value=2.4  Score=30.71  Aligned_cols=31  Identities=10%  Similarity=0.246  Sum_probs=24.0

Q ss_pred             eEEEEcCCC--HHHHHHHHHHHhcCCcEEEEEEec
Q 031341           37 KVIINGAVK--EIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        37 kV~ViGa~G--~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      ++.|.|+.|  .||+++++.+. ..|.+|+- .++
T Consensus         8 ~~lItGaag~~GIG~aiA~~la-~~Ga~Vil-~~~   40 (268)
T d2h7ma1           8 RILVSGIITDSSIAFHIARVAQ-EQGAQLVL-TGF   40 (268)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHH-HTTCEEEE-EEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH-HcCCEEEE-EeC
Confidence            688899755  49999999986 77899764 443

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.23  E-value=3.8  Score=29.86  Aligned_cols=31  Identities=13%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEE
Q 031341           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGA   66 (161)
Q Consensus        35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvav   66 (161)
                      +.||.|+|. |.-|..++..+.+.  ++++.+++
T Consensus        15 ~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iai   47 (209)
T d2vapa1          15 KAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAI   47 (209)
T ss_dssp             CCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred             CCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEE
Confidence            378999995 99999999988754  56776644

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=80.66  E-value=0.81  Score=32.72  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=26.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (161)
Q Consensus        34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~   69 (161)
                      .+-||+|+|+ |-.|-+.+..+. ..+++++ +++.
T Consensus        42 ~~k~V~IIGa-GPAGL~AA~~la-~~G~~Vt-l~E~   74 (179)
T d1ps9a3          42 QKKNLAVVGA-GPAGLAFAINAA-ARGHQVT-LFDA   74 (179)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHH-TTTCEEE-EEES
T ss_pred             CCcEEEEECc-cHHHHHHHHHHH-hhccceE-EEec
Confidence            3579999995 999999998875 7788865 7774

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.56  E-value=0.62  Score=32.83  Aligned_cols=22  Identities=23%  Similarity=0.529  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc
Q 031341           36 IKVIINGAVKEIGRAAVIAVTKA   58 (161)
Q Consensus        36 ikV~ViGa~G~mGr~i~~~l~~~   58 (161)
                      |||+|+|+ |-+|-..+-.|++.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~   22 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHER   22 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH
T ss_pred             CEEEEECc-hHHHHHHHHHHHHC
Confidence            79999996 99999999988753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=1  Score=31.86  Aligned_cols=35  Identities=34%  Similarity=0.461  Sum_probs=27.6

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (161)
Q Consensus        31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd   68 (161)
                      |+.+.-||+|||+ |--|-..+..|. ..|++++ |++
T Consensus         1 p~~~~~kViVIGa-G~aGL~aA~~L~-~~G~~V~-VlE   35 (449)
T d2dw4a2           1 PTKKTGKVIIIGS-GVSGLAAARQLQ-SFGMDVT-LLE   35 (449)
T ss_dssp             CSSCCCEEEEECC-BHHHHHHHHHHH-HTTCEEE-EEC
T ss_pred             CCCCCCcEEEECC-CHHHHHHHHHHH-hCCCCEE-EEe
Confidence            4556689999995 999999888886 5688854 777

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=80.44  E-value=1.2  Score=29.65  Aligned_cols=30  Identities=30%  Similarity=0.395  Sum_probs=24.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031341           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (161)
Q Consensus        37 kV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd   68 (161)
                      ||.|+|+ |..|-+++..|.+. ++.+++ +++
T Consensus         4 rivIvGg-G~~G~e~A~~l~~~~~~~~Vt-lie   34 (186)
T d1fcda1           4 KVVVVGG-GTGGATAAKYIKLADPSIEVT-LIE   34 (186)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCTTSEEE-EEC
T ss_pred             cEEEECc-cHHHHHHHHHHHHcCCCCcEE-EEE
Confidence            8999995 99999999999864 567876 455