Citrus Sinensis ID: 031342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MANAIALLSCNTVVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTVHVPRN
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccHHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEccccccccccccccccccccHHHHHHHHccccccccHHHHHHHccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccHEEccccccEEEEccccccHccccccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHcccHHHHHHHHHHccccccEEEEcccccEEEEccccccEEEccHHHHHHHccccHHHHHHHHHHHHHHHHcccEccccc
Coil and Loop (DISEMBL)
MANAIALLSCNTVVLAAQQRPQRRakklkkpntkqnnknststsssvgfgiekmeplwrcvqgcgacckldkgpdfatpeeifddpsdvELYRsligpdgwcinyekstrkcsiyperpyfcrvepaVFLSLYGINKKKFNKEAFaavipsrqytvhvprn
Flexible Loop (DISEMBL)
manaiallscntvvlaaqqrpqrrakklkkpntkqnnknststsssvgfGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEAFaavipsrqytvhvprn
Low Complexity Region (SEG)
MANAIALLSCNTVVLAAQQRPQRRAkklkkpntkqnnknststsssVGFGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGInkkkfnkeafaaVIPSRQYTVHVPRN
Disordered region (IsUnstruct)
****IALLSCNTVVLA*******************************GFGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTV*****
Disordered Region (DISOPRED)
********SC***********************************************WRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTVHV***
Disordered Region (DISEMBL)
MANAIALLSCNTVVLAAQQ***************************VGFGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTVHVPRN
Disordered Region (DISPRO)
*ANAIALLSCNTVVLAAQ**********************************KMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTVH****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANAIALLSCNTVVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTVHVPRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224088603	168	predicted protein [Populus trichocarpa]	0.850	0.815	0.662	2e-48
225439815	184	PREDICTED: uncharacterized protein LOC10	0.683	0.597	0.709	4e-44
255568492	175	conserved hypothetical protein [Ricinus	0.621	0.571	0.78	1e-42
356548184	165	PREDICTED: uncharacterized protein LOC10	0.819	0.8	0.595	5e-42
297806201	177	hypothetical protein ARALYDRAFT_487044 [	0.950	0.864	0.564	2e-41
15241920	176	uncharacterized protein [Arabidopsis tha	0.962	0.880	0.534	7e-40
21553724	174	unknown [Arabidopsis thaliana]	0.937	0.867	0.537	9e-40
449502625	156	PREDICTED: uncharacterized LOC101220204,	0.770	0.794	0.583	9e-37
449448683	162	PREDICTED: uncharacterized protein LOC10	0.614	0.611	0.696	1e-36
148907146	169	unknown [Picea sitchensis]	0.826	0.786	0.552	5e-35

>gi|224088603|ref|XP_002308492.1| predicted protein [Populus trichocarpa] gi|222854468|gb|EEE92015.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 113/145 (77%), Gaps = 8/145 (5%)

Query: 1   MANAIALLSCNTVVLAAQQRPQR-RAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWR 59
           M+ AI+L   N+V+ AA++ PQ+ + K  K P        +T   S+ GFG  K EPLWR
Sbjct: 1   MSPAISLPCFNSVIFAARRSPQKGKLKNAKVPG-------ATPKLSNTGFGTSKKEPLWR 53

Query: 60  CVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERP 119
           CV+GCGACCKL KGP FATPEEIF +PSD+ELY+SLIGPDGWCI+YEKSTRKCSIYP+RP
Sbjct: 54  CVEGCGACCKLAKGPAFATPEEIFTNPSDIELYKSLIGPDGWCIHYEKSTRKCSIYPDRP 113

Query: 120 YFCRVEPAVFLSLYGINKKKFNKEA 144
           YFCRVEP +F SLYGI KKKFNKEA
Sbjct: 114 YFCRVEPDIFESLYGITKKKFNKEA 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439815|ref|XP_002274142.1| PREDICTED: uncharacterized protein LOC100243090 [Vitis vinifera] gi|297741516|emb|CBI32648.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/110 (70%), Positives = 93/110 (84%)

Query: 35  QNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRS 94
           Q  +  +  S  +GFG ++ +P W+C+QGCGACCKLDKGP FATPEEIFDDPSDV+LYRS
Sbjct: 43  QTKQRQSRGSDGIGFGGKRNDPTWQCIQGCGACCKLDKGPSFATPEEIFDDPSDVKLYRS 102

Query: 95  LIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEA 144
           ++GPDGWCI+YEKSTR CSIY +RPYFCRVEP VF +LYGI KK+FNKEA
Sbjct: 103 MVGPDGWCIHYEKSTRTCSIYSDRPYFCRVEPNVFQTLYGIGKKRFNKEA 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568492|ref|XP_002525220.1| conserved hypothetical protein [Ricinus communis] gi|223535517|gb|EEF37186.1| conserved hypothetical protein [Ricinus communis]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 88/100 (88%)

Query: 45  SSVGFGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCIN 104
           S+ GFG ++ E LWRCV+GCGACCKLDKGP FATPEEIF DP D+ELYRSL+GPDGWC++
Sbjct: 46  SATGFGAKRPEQLWRCVEGCGACCKLDKGPSFATPEEIFTDPCDIELYRSLVGPDGWCVH 105

Query: 105 YEKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEA 144
           Y+KSTRKCSIY ERPYFCRVE  VFL LYGI +KKFNKEA
Sbjct: 106 YDKSTRKCSIYSERPYFCRVEAPVFLKLYGIPQKKFNKEA 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548184|ref|XP_003542483.1| PREDICTED: uncharacterized protein LOC100818260 [Glycine max]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 105/146 (71%), Gaps = 14/146 (9%)

Query: 1   MANAIALLS--CNTVVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLW 58
           M+ A+  LS   +  V +A +RP  R   + K   KQ          S+GFG +K E  W
Sbjct: 1   MSPALTTLSPPLSLSVTSAARRP--RLTAMVKTEKKQ----------SLGFGSDKKETKW 48

Query: 59  RCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPER 118
            CV+GCG+CCKL KGP F +PEEIFDDPSDV+LY+SLIGPDGWCI+YEKSTRKCSIYPER
Sbjct: 49  HCVEGCGSCCKLQKGPSFPSPEEIFDDPSDVQLYKSLIGPDGWCIHYEKSTRKCSIYPER 108

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEA 144
           PYFCRVEP VF SL+G+ +K F+KEA
Sbjct: 109 PYFCRVEPEVFKSLFGVKEKNFHKEA 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806201|ref|XP_002870984.1| hypothetical protein ARALYDRAFT_487044 [Arabidopsis lyrata subsp. lyrata] gi|297316821|gb|EFH47243.1| hypothetical protein ARALYDRAFT_487044 [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 110/156 (70%), Gaps = 3/156 (1%)

Query: 4   AIALLSCNTVVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQG 63
           A++    +T +++A +R Q    K KK   K  NK  T+TS+S   G    E  W+CV+G
Sbjct: 6   ALSTAPMSTTIISATRRSQVSQPKAKK--VKPENKRPTTTSTSGFSGRTTKELTWKCVEG 63

Query: 64  CGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCR 123
           CGACCK+ K   FATP+EIFD+P DVELYRS+IG DGWCINY KSTRKCSIY +RPYFCR
Sbjct: 64  CGACCKIAKDFAFATPDEIFDNPDDVELYRSMIGDDGWCINYNKSTRKCSIYSDRPYFCR 123

Query: 124 VEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTVHVP 159
           VEP VF SLYGI +KKFNKEA +  I + + T++ P
Sbjct: 124 VEPEVFKSLYGIEEKKFNKEAVSCCIDTIK-TIYGP 158

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241920|ref|NP_195891.1| uncharacterized protein [Arabidopsis thaliana] gi|7413546|emb|CAB86025.1| putative protein [Arabidopsis thaliana] gi|15450946|gb|AAK96744.1| putative protein [Arabidopsis thaliana] gi|30102908|gb|AAP21372.1| At5g02710 [Arabidopsis thaliana] gi|62318528|dbj|BAD94876.1| hypothetical protein [Arabidopsis thaliana] gi|332003125|gb|AED90508.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 111/159 (69%), Gaps = 4/159 (2%)

Query: 1   MANAIALLSCNTVVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRC 60
           M+ A++    +  +++A +R Q    K KK   K  NK  T ++S    G  K E  W+C
Sbjct: 3   MSLALSTAPMSRTIISATRRSQVSQPKAKK--VKPANKRPTMSTSGFSGGTTK-ELTWKC 59

Query: 61  VQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPY 120
           V+GCGACCK+ K   FATP+EIFD+P DVELYRS+IG DGWC+NY+K+TRKCSIY +RPY
Sbjct: 60  VEGCGACCKIAKDFSFATPDEIFDNPDDVELYRSMIGDDGWCLNYDKATRKCSIYADRPY 119

Query: 121 FCRVEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTVHVP 159
           FCRVEP VF SLYGI +KKFNKEA +  I + + T++ P
Sbjct: 120 FCRVEPEVFKSLYGIEEKKFNKEAVSCCIDTIK-TIYGP 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553724|gb|AAM62817.1| unknown [Arabidopsis thaliana]

 Score =  168 bits (425), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 108/158 (68%), Gaps = 7/158 (4%)

Query: 1   MANAIALLSCNTVVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRC 60
           M+ A++    +  +++A +R Q    K KK   K  NK  T ++S    G  K E  W+C
Sbjct: 1   MSLALSTAPMSRTIISATRRSQVSQPKAKK--VKPANKRPTMSTSGFSGGTTK-ELTWKC 57

Query: 61  VQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPY 120
           V+GCGACCK+ K   FATP+EIFD+P DVELYRS+IG DGWC+NY+K+TRKCSIY +RPY
Sbjct: 58  VEGCGACCKIAKDFSFATPDEIFDNPDDVELYRSMIGDDGWCLNYDKATRKCSIYADRPY 117

Query: 121 FCRVEPAVFLSLYGINKKKFNKEAFAAVIPSRQYTVHV 158
           FCRVEP VF SLYGI +KKFNKEA +  I    YT+  
Sbjct: 118 FCRVEPEVFKSLYGIEEKKFNKEAVSCCI----YTIKT 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502625|ref|XP_004161697.1| PREDICTED: uncharacterized LOC101220204, partial [Cucumis sativus]

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 93/132 (70%), Gaps = 8/132 (6%)

Query: 13  VVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKLDK 72
           V + A  RPQ+   K  K    +N         +VGFG ++ E LW+C++GCGACCKL K
Sbjct: 4   VTVTAAHRPQKTKTKDYKTTQGRN--------INVGFGGKRKEELWQCIEGCGACCKLAK 55

Query: 73  GPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFLSL 132
           GP FA PEEIF + SD+ELY+SLIG DGWCI+YEK+TRKCSIY +RPYFCRVE  VF  L
Sbjct: 56  GPSFAAPEEIFQNTSDIELYKSLIGVDGWCIHYEKTTRKCSIYADRPYFCRVESPVFEKL 115

Query: 133 YGINKKKFNKEA 144
           YGI + KFNK A
Sbjct: 116 YGIKENKFNKAA 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448683|ref|XP_004142095.1| PREDICTED: uncharacterized protein LOC101220204 [Cucumis sativus]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 82/99 (82%)

Query: 46  SVGFGIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINY 105
           +VGFG ++ E LW+C++GCGACCKL KGP FA PEEIF + SD+ELY+SLIG DGWCI+Y
Sbjct: 35  NVGFGGKRKEELWQCIEGCGACCKLAKGPSFAAPEEIFQNTSDIELYKSLIGVDGWCIHY 94

Query: 106 EKSTRKCSIYPERPYFCRVEPAVFLSLYGINKKKFNKEA 144
           EK+TRKCSIY +RPYFCRVE  VF  LYGI + KFNK A
Sbjct: 95  EKTTRKCSIYADRPYFCRVESPVFEKLYGIKENKFNKAA 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907146|gb|ABR16716.1| unknown [Picea sitchensis]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 88/134 (65%), Gaps = 1/134 (0%)

Query: 11  NTVVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKL 70
           NT V+   Q  +     L     K+   N T   +  GF  ++ E  W CV GCGACCKL
Sbjct: 5   NTTVIDRPQSHESGIPVLAMAKMKKKQLN-TKLKNGKGFETKQEEVTWACVSGCGACCKL 63

Query: 71  DKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAVFL 130
            KGP FA PE+IFDDP D+ LY SLIG DGWC+NY+K TR CSIY ERPYFCRV+P VF 
Sbjct: 64  AKGPSFAPPEDIFDDPDDIALYWSLIGSDGWCVNYDKVTRTCSIYNERPYFCRVKPDVFK 123

Query: 131 SLYGINKKKFNKEA 144
            LYGI++ +FNKEA
Sbjct: 124 KLYGIDENRFNKEA 137

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2151321	176	AT5G02710 "AT5G02710" [Arabido	0.546	0.5	0.707	5.2e-33
UNIPROTKB|Q4K6A0	102	PFL_5154 "Uncharacterized prot	0.416	0.656	0.361	2.1e-06
UNIPROTKB|Q481K2	96	CPS_2552 "Putative uncharacter	0.366	0.614	0.348	0.00013
TIGR_CMR|CPS_2552	96	CPS_2552 "conserved hypothetic	0.366	0.614	0.348	0.00013
UNIPROTKB|Q4K3T5	117	PFL_6040 "Uncharacterized prot	0.391	0.538	0.304	0.00027
UNIPROTKB|Q888B6	74	PSPTO_1114 "Uncharacterized pr	0.291	0.635	0.38	0.00057

TAIR|locus:2151321 AT5G02710 "AT5G02710" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 63/89 (70%), Positives = 73/89 (82%)

Query:    48 GF-GIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYE 106
             GF G    E  W+CV+GCGACCK+ K   FATP+EIFD+P DVELYRS+IG DGWC+NY+
Sbjct:    46 GFSGGTTKELTWKCVEGCGACCKIAKDFSFATPDEIFDNPDDVELYRSMIGDDGWCLNYD 105

Query:   107 KSTRKCSIYPERPYFCRVEPAVFLSLYGI 135
             K+TRKCSIY +RPYFCRVEP VF SLYGI
Sbjct:   106 KATRKCSIYADRPYFCRVEPEVFKSLYGI 134

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

UNIPROTKB|Q4K6A0 PFL_5154 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 26/72 (36%), Positives = 33/72 (45%)

Query:    55 EPLWRCVQGCGACCKLDKG--PDFATPEEIFD-DPSDVELYRSLIGPDGWCINYEKSTRK 111
             EP   C      CC+L+     D   PE   D D    E+ R L   DGWC   ++ + +
Sbjct:    12 EPAVSCSTCAACCCQLEVMLITDTGVPERFIDTDDWGGEVMRRL--DDGWCAALDRDSMR 69

Query:   112 CSIYPERPYFCR 123
             CSIY  RP  CR
Sbjct:    70 CSIYELRPLICR 81

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q481K2 CPS_2552 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/66 (34%), Positives = 31/66 (46%)

Query:    62 QGCGACCKLDKG--PDFATPEE-IFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPER 118
             Q C  CC L+     D   P+  ++ D    E    L   DGWC   ++ T  CSIY  R
Sbjct:    19 QAC--CCSLEVMLLTDTGVPDRHVYVDEYGKETM--LRFDDGWCSALDRDTLMCSIYENR 74

Query:   119 PYFCRV 124
             P+ CR+
Sbjct:    75 PWVCRI 80

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_2552 CPS_2552 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/66 (34%), Positives = 31/66 (46%)

Query:    62 QGCGACCKLDKG--PDFATPEE-IFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPER 118
             Q C  CC L+     D   P+  ++ D    E    L   DGWC   ++ T  CSIY  R
Sbjct:    19 QAC--CCSLEVMLLTDTGVPDRHVYVDEYGKETM--LRFDDGWCSALDRDTLMCSIYENR 74

Query:   119 PYFCRV 124
             P+ CR+
Sbjct:    75 PWVCRI 80

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4K3T5 PFL_6040 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query:    56 PLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIY 115
             P + CV GC  CC    GP   +PEE+   P      +     +  C++       C++Y
Sbjct:    16 PSFECVPGCHDCC----GPVTTSPEEMSRLPRKTAAEQEAAMDELNCVHL--GPNGCTVY 69

Query:   116 PERPYFCRV 124
              ERP  CR+
Sbjct:    70 DERPLICRL 78

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q888B6 PSPTO_1114 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query:    75 DFATPEEIFD-DPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYFCR 123
             D   PE   D D    E+   L   DGWC   +++T  C+IY +RP  CR
Sbjct:     6 DTGVPERYIDTDEWGGEVMLRL--DDGWCAALDRNTMMCTIYEKRPLICR 53


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.141   0.465    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       128   0.00091  102 3  11 22  0.36    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.72u 0.13s 10.85t   Elapsed:  00:00:01
  Total cpu time:  10.72u 0.13s 10.85t   Elapsed:  00:00:01
  Start:  Fri May 10 22:20:33 2013   End:  Fri May 10 22:20:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam03692	85	pfam03692, FliB, Flagellin N-methylase	2e-11
COG0727	132	COG0727, COG0727, Predicted Fe-S-cluster oxidoredu	7e-11

>gnl|CDD|217675 pfam03692, FliB, Flagellin N-methylase

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 63  GCGACCKLDKGP------DFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYP 116
           GCGACCK           +   P  + ++  D+E Y  +   DG C+  ++ T  CSIY 
Sbjct: 4   GCGACCKALGIKLTDEDTERLAPTGVAEEDEDLEEYVKV---DGRCVFLDEETCLCSIYE 60

Query: 117 ERPYFCRVEPAVFLSLYGIN 136
           ERP  CR+ P   +  +G  
Sbjct: 61  ERPLCCRLFPFSNIEEFGWL 80

This family of proteins contains 8 conserved cysteines. It is one of the complex of proteins of the flagellar Fli complex. FliB is a lysine-N-methylase that is required for post-translational methylation of lysine residues in the flagellin. It is found in a wide range of different Proteobacteria including E coli and various Salmonella spp. Length = 85

>gnl|CDD|223799 COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]

 Score = 56.2 bits (135), Expect = 7e-11
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 53  KMEPLWRCVQGCGACCKL----------DKGPDFATPEEIFDDPSDVELYRSLIGPDGWC 102
           K + ++ C +GCGACC            D+G     P +    P  +      +  +G C
Sbjct: 5   KFKFIFFCCEGCGACCCAIEVSLPEPGFDRGELKGYPADTEALPKYLRCKLLDVDINGRC 64

Query: 103 INYEKSTRKCSIYPERPYFCRVEPAVF 129
           +  +  T+ C IY  RP  CR  P V 
Sbjct: 65  VFLDGETKLCRIYEIRPLACRTFPFVE 91

Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PF03692	85	CxxCxxCC: Putative zinc- or iron-chelating domain;	99.64
COG0727	132	Predicted Fe-S-cluster oxidoreductase [General fun	99.42
PRK05170	147	hypothetical protein; Provisional	97.23
COG2983	153	Uncharacterized conserved protein [Function unknow	93.2
PF11307	183	DUF3109: Protein of unknown function (DUF3109); In	91.63

>PF03692 CxxCxxCC: Putative zinc- or iron-chelating domain; InterPro: IPR005358 This family of proteins contain 8 conserved cysteines that may form a zinc binding site

Probab=99.64  E-value=7.4e-17  Score=112.64  Aligned_cols=67  Identities=34%  Similarity=0.640  Sum_probs=50.5

Q ss_pred             CchhhhhhcCCCCCCCCcCCHHHhhcChhhHHh-----hhhhcCCCCccccccCCCCCCcccCCCCcccccCcch
Q 031342           59 RCVQGCGACCKLDKGPDFATPEEIFDDPSDVEL-----YRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAV  128 (161)
Q Consensus        59 ~C~~~CG~CC~~~~~~i~lt~~ei~~l~~~l~~-----y~~l~~~dg~C~FLd~~~~~CsIYe~RP~~CR~fPf~  128 (161)
                      +|. +||.||+..  .+.++..|+.++...+..     .......+++|+||+.++++|+||++||++||+||++
T Consensus         1 ~C~-~Cg~CC~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~C~fL~~~~~~C~Iy~~RP~~CR~~p~~   72 (85)
T PF03692_consen    1 KCR-QCGACCRGY--RVPLTPEEIERIAEHLGIEEEFFLERYAREDGPCPFLDEDNGRCSIYEVRPLICRTYPFW   72 (85)
T ss_pred             Ccc-cHhHHHcCC--CcCCCHHHHHHHHHHhcCchhhhHHHhhccCCCCcCcCCCCCccCCcCccCHhHeeCccc
Confidence            585 899999943  356799998776644321     1112236789999997667999999999999999988

The function of these proteins is unknown.

>COG0727 Predicted Fe-S-cluster oxidoreductase [General function prediction only]

Probab=99.42  E-value=2e-14  Score=108.50  Aligned_cols=77  Identities=26%  Similarity=0.433  Sum_probs=50.8

Q ss_pred             CCCCCCchhhhhhcCCCCCCCCcCCHHHhhcCh--------hhHHhhh----hhcCCCCccccccCCCCCCcccCCCCcc
Q 031342           54 MEPLWRCVQGCGACCKLDKGPDFATPEEIFDDP--------SDVELYR----SLIGPDGWCINYEKSTRKCSIYPERPYF  121 (161)
Q Consensus        54 ~~~~f~C~~~CG~CC~~~~~~i~lt~~ei~~l~--------~~l~~y~----~l~~~dg~C~FLd~~~~~CsIYe~RP~~  121 (161)
                      +...+.| ..||+||.......  ...++.++.        ..+..+.    .....+++|+||+.+++.|+||++||.+
T Consensus         7 ~~~~~~c-~~Cg~cC~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~fl~~~~~~C~Iy~~RP~~   83 (132)
T COG0727           7 KFIFFCC-EGCGACCCAIEVSL--PEPGFDRGELKGYPADTEALPKYLRCKLLDVDINGRCVFLDGETKLCRIYEIRPLA   83 (132)
T ss_pred             hhhhhhH-HHhhHHhcCCCCCc--chhhhhHHHhcCCCccceeecccceeeeecccCCCCCEEecCCCCceeecCcCchh
Confidence            3456789 59999999765322  222222221        0011121    2224556999999776789999999999


Q ss_pred             cccCcchhhhhh
Q 031342          122 CRVEPAVFLSLY  133 (161)
Q Consensus       122 CR~fPf~~~~~~  133 (161)
                      ||+||++.....
T Consensus        84 Cr~~P~~~~~~~   95 (132)
T COG0727          84 CRTFPFVEERGT   95 (132)
T ss_pred             heecceEEeccc
Confidence            999999887665

>PRK05170 hypothetical protein; Provisional

Probab=97.23  E-value=6.7e-05  Score=59.19  Aligned_cols=47  Identities=30%  Similarity=0.584  Sum_probs=32.5

Q ss_pred             CchhhhhhcCCCCCCCCcCCHHHhhcChhhHHhhhhhcCCCCccccccCCCCCCcccCCCCcc
Q 031342           59 RCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYF  121 (161)
Q Consensus        59 ~C~~~CG~CC~~~~~~i~lt~~ei~~l~~~l~~y~~l~~~dg~C~FLd~~~~~CsIYe~RP~~  121 (161)
                      -| .|||.||...     +..+|-          ..+.-.+..|.+||.++.+|++|+.|-..
T Consensus        23 LC-DgCG~CCl~K-----leDedt----------gei~~T~vaC~lLD~~T~~C~~Y~~R~~~   69 (147)
T PRK05170         23 LC-DGCGKCCLHK-----LEDEDT----------GEIYYTNVACRLLDIKTCQCSDYENRFEF   69 (147)
T ss_pred             Hh-hhhhHHhcee-----eeccCC----------CcEEEcceecccccCCCCCCCChhhhccc
Confidence            49 6999999853     222221          01122467999999888999999999653

>COG2983 Uncharacterized conserved protein [Function unknown]

Probab=93.20  E-value=0.0098  Score=47.06  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=17.7

Q ss_pred             ccccccCCCCCCcccCCCCc
Q 031342          101 WCINYEKSTRKCSIYPERPY  120 (161)
Q Consensus       101 ~C~FLd~~~~~CsIYe~RP~  120 (161)
                      .|.+||.++.+|+.|+.|-.
T Consensus        54 aC~lLd~etcrC~~Y~~Rf~   73 (153)
T COG2983          54 ACELLDPETCRCKDYENRFK   73 (153)
T ss_pred             eeeecCccccccccHHhhhc
Confidence            79999988999999998854

>PF11307 DUF3109: Protein of unknown function (DUF3109); InterPro: IPR021458 This bacterial family of proteins has no known function

Probab=91.63  E-value=0.098  Score=42.81  Aligned_cols=78  Identities=24%  Similarity=0.356  Sum_probs=47.1

Q ss_pred             CCCCCc-hhhh-hhcCCCCCCCCcCCHHHhhcChhhH---Hhhhh----------------hcC-------CCCcccccc
Q 031342           55 EPLWRC-VQGC-GACCKLDKGPDFATPEEIFDDPSDV---ELYRS----------------LIG-------PDGWCINYE  106 (161)
Q Consensus        55 ~~~f~C-~~~C-G~CC~~~~~~i~lt~~ei~~l~~~l---~~y~~----------------l~~-------~dg~C~FLd  106 (161)
                      ...|.| +..| |+||-....--+|+.+|+..+.+.+   ..|++                ..+       ..+.|.|.-
T Consensus        15 ~~~F~CdL~~CkG~CCvEGd~GAPl~~~E~~~le~~~~~v~~~L~~~~~~~I~~qG~~~~d~~Gd~~T~~v~g~eCvf~~   94 (183)
T PF11307_consen   15 EEKFVCDLSACKGACCVEGDAGAPLEEEEIAILEEIYPKVKPYLSPEGIAAIERQGVAYEDEDGDLVTPIVNGKECVFTC   94 (183)
T ss_pred             hhcccCchhcCCCCCccCCCcCCCCCHHHHHHHHHHhHHHhhhcCHHHHHHHHHcCceEEecCCCEEeeeEcCCeeEEEE
Confidence            456777 2488 9999743333557888885544322   11210                001       234799985


Q ss_pred             C-CCC--CCcccC---------CCCcccccCcchhhhh
Q 031342          107 K-STR--KCSIYP---------ERPYFCRVEPAVFLSL  132 (161)
Q Consensus       107 ~-~~~--~CsIYe---------~RP~~CR~fPf~~~~~  132 (161)
                      - ++|  .|.|-.         .+|..|++||--....
T Consensus        95 ~~e~G~~~CaiE~Ay~~G~~~~~KPISChLYPIRv~~~  132 (183)
T PF11307_consen   95 YDENGICLCAIEKAYREGKIDFKKPISCHLYPIRVKKY  132 (183)
T ss_pred             EccCCEEEEHHHHHHHcCCCCCCCCceEeecceEEEee
Confidence            3 333  788754         7999999999544433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00