Citrus Sinensis ID: 031361
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 161 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Z2E3 | 911 | Serine/threonine-protein | yes | no | 0.776 | 0.137 | 0.305 | 5e-05 |
| >sp|Q9Z2E3|ERN2_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Mus musculus GN=Ern2 PE=2 SV=2 | Back alignment and function desciption |
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Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 5 LIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS 64
L FLL L +L L P PES L V+TL+G++H ++ + G+ +W+ I
Sbjct: 14 LGFLLQLVTLLGKLGPQVQSVRPES--LLFVSTLDGSLHALNKQTGDLKWTVKDDPIIQG 71
Query: 65 SFTRNDPDFYVDVGEDWKLYF--HRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEK 122
+ F D D LY +K G MK P + E + P DG G ++
Sbjct: 72 PMYVTEMAFLSDPA-DGSLYVLGTQKQQGLMKLP-FTIPELVHASPCRSSDGVFYTGRKQ 129
Query: 123 TSVFFVDAKSG 133
+ F VD +SG
Sbjct: 130 DAWFVVDPESG 140
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Role in expression of the DDIT3 transcription factor, required for the unfolded-protein response, growth arrest and apoptosis. Has no effect on 28S ribosomal RNA cleavage, unlike the corresponding human protein. Mus musculus (taxid: 10090) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 161 | ||||||
| 255539280 | 720 | conserved hypothetical protein [Ricinus | 0.931 | 0.208 | 0.372 | 2e-26 | |
| 296082563 | 332 | unnamed protein product [Vitis vinifera] | 0.745 | 0.361 | 0.438 | 4e-21 | |
| 225438442 | 957 | PREDICTED: uncharacterized protein LOC10 | 0.726 | 0.122 | 0.440 | 4e-20 | |
| 224074275 | 822 | predicted protein [Populus trichocarpa] | 0.732 | 0.143 | 0.423 | 7e-19 | |
| 449434428 | 898 | PREDICTED: uncharacterized protein LOC10 | 0.664 | 0.119 | 0.426 | 5e-18 | |
| 449491419 | 831 | PREDICTED: uncharacterized LOC101215649 | 0.720 | 0.139 | 0.412 | 6e-18 | |
| 297745578 | 827 | unnamed protein product [Vitis vinifera] | 0.875 | 0.170 | 0.375 | 1e-17 | |
| 225457602 | 925 | PREDICTED: uncharacterized protein LOC10 | 0.875 | 0.152 | 0.375 | 1e-17 | |
| 255561453 | 911 | kinase, putative [Ricinus communis] gi|2 | 0.708 | 0.125 | 0.406 | 1e-16 | |
| 357484205 | 904 | Serine/threonine protein kinase/endoribo | 0.658 | 0.117 | 0.407 | 8e-14 |
| >gi|255539280|ref|XP_002510705.1| conserved hypothetical protein [Ricinus communis] gi|223551406|gb|EEF52892.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 38/188 (20%)
Query: 1 MRRSLIFLLLLTVILSSL----------PPTSPRASPE-------------SGDLALVAT 37
MRR LI LL V+L L P+ P S + D+ALVA
Sbjct: 1 MRRYLILLLFKLVMLIPLIRSISGSAISQPSIPDESSQISKLYKSFLPPKPKQDVALVAA 60
Query: 38 LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD---------------FYVDVGEDWK 82
L+GTV+ VDT + RWSFS G PIYSS+ N D +Y+D G+DW+
Sbjct: 61 LDGTVYFVDTNSRKVRWSFSSGSPIYSSYQANPNDDEDRHNSGSELSNDLYYIDCGDDWE 120
Query: 83 LYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142
LY H K GK++K ++ E+++ PH+ +DG + LG ++T+ F VDAK+G ++ ++ D
Sbjct: 121 LYVHSKRFGKLQKLALSPEEYVKMTPHISEDGEITLGFKRTTAFLVDAKTGRVVRTYGFD 180
Query: 143 NSASTLGS 150
NS ST G+
Sbjct: 181 NSTSTFGA 188
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082563|emb|CBI21568.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 80/130 (61%), Gaps = 10/130 (7%)
Query: 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-----NDPD----FYVDV 77
P D ALVA LNGT+HLV++ + WSF+ G IYSS+ N D F+VD
Sbjct: 55 PNKNDTALVAALNGTIHLVESNSMKVLWSFTSGPSIYSSYQAPLDQDNATDWGSGFFVDC 114
Query: 78 GEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMIC 137
GEDW+LY H + GK+K P + EF+ PHV +DG ++LG ++T+VF ++AK+G +I
Sbjct: 115 GEDWELYMHGRHFGKVKLP-MTAEEFISSTPHVSEDGGVILGSKQTTVFLLNAKTGKLIH 173
Query: 138 SHESDNSAST 147
S+ S S T
Sbjct: 174 SYRSLESPPT 183
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438442|ref|XP_002275036.1| PREDICTED: uncharacterized protein LOC100249111 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 79/127 (62%), Gaps = 10/127 (7%)
Query: 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-----NDPD----FYVDVGED 80
D ALVA LNGT+HLV++ + WSF+ G IYSS+ N D F+VD GED
Sbjct: 89 NDTALVAALNGTIHLVESNSMKVLWSFTSGPSIYSSYQAPLDQDNATDWGSGFFVDCGED 148
Query: 81 WKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140
W+LY H + GK+K P + EF+ PHV +DG ++LG ++T+VF ++AK+G +I S+
Sbjct: 149 WELYMHGRHFGKVKLP-MTAEEFISSTPHVSEDGGVILGSKQTTVFLLNAKTGKLIHSYR 207
Query: 141 SDNSAST 147
S S T
Sbjct: 208 SLESPPT 214
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074275|ref|XP_002304333.1| predicted protein [Populus trichocarpa] gi|222841765|gb|EEE79312.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 87/137 (63%), Gaps = 19/137 (13%)
Query: 34 LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF---TRNDPD----------FYVDVGED 80
LVA LNGT++ D G+ WSFS G P YSS+ ++D D F++D G+D
Sbjct: 1 LVALLNGTIYFKDKISGKILWSFSSGGPTYSSYQAPAKHDSDKEKGPGGLTGFFLDYGDD 60
Query: 81 WKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140
W+LY H K G MK P +++ +F++ PH+ +DGA++LG +KT+VF V+AK+G +I + +
Sbjct: 61 WQLYAHYKYSGGMKLP-MNIEDFIKITPHMSEDGAVMLGSKKTTVFVVEAKTGRLIRTFK 119
Query: 141 SDNSASTL-----GSGL 152
S +S S+L GSGL
Sbjct: 120 SPDSPSSLQSFEEGSGL 136
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434428|ref|XP_004134998.1| PREDICTED: uncharacterized protein LOC101215649 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 15/122 (12%)
Query: 33 ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---DPD----------FYVDVGE 79
AL+A L+G +HLVD+ + WSFS G PIYSS+ N +P+ F+ D G+
Sbjct: 60 ALIAALDGAIHLVDSNSMKIIWSFSSGPPIYSSYQANINHEPNQENASGVGSSFFFDCGD 119
Query: 80 DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139
DW+LY H + GKMK PS + E +R P++++DGA++ G KT+VF VD +G +I +H
Sbjct: 120 DWELYIHTEH-GKMKLPST-IDEVVRNTPYIFEDGAVMTGSRKTAVFEVDLVTGELIRNH 177
Query: 140 ES 141
S
Sbjct: 178 MS 179
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491419|ref|XP_004158890.1| PREDICTED: uncharacterized LOC101215649 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 15/131 (11%)
Query: 33 ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---DPD----------FYVDVGE 79
AL+A L+G +HLVD+ + WSFS G PIYSS+ N +P+ F+ D G+
Sbjct: 60 ALIAALDGAIHLVDSNSMKIIWSFSSGPPIYSSYQANINHEPNQENASGVGSSFFFDCGD 119
Query: 80 DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139
DW+LY H + GKMK PS + E +R P++++DGA++ G KT+VF VD +G +I +H
Sbjct: 120 DWELYIHTEH-GKMKLPST-IDEVVRNTPYIFEDGAVMTGSRKTAVFEVDLVTGELIRNH 177
Query: 140 ESDNSASTLGS 150
S +S L +
Sbjct: 178 MSKFLSSGLSN 188
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745578|emb|CBI40743.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 35/176 (19%)
Query: 1 MRRSLIFLLLLTVI-----LSSLPPTS------------------PRASPESGDLALVAT 37
M+RSLIFLL I +S+ P TS P+A D+ALVA
Sbjct: 1 MKRSLIFLLWFISISGVLAISTKPETSLLNLDSKGFDILKANSIVPQAP--KNDIALVAA 58
Query: 38 LNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-----NDP----DFYVDVGEDWKLYFHRK 88
L+GT++LV+ + WSF+ G IYSS+ ND DF++D G+DW+LY H
Sbjct: 59 LDGTIYLVEASSRKILWSFASGSSIYSSYQAFLDGDNDKQLSTDFFIDCGDDWELYRHNI 118
Query: 89 GIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144
GK +K + +++ P+V DG + +G +KT+VF VDAKSG +I + SD S
Sbjct: 119 SFGKREKLLLTPEKYVEGAPYVSKDG-VTVGSKKTTVFLVDAKSGTIINTFRSDAS 173
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457602|ref|XP_002272934.1| PREDICTED: uncharacterized protein LOC100247854 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 35/176 (19%)
Query: 1 MRRSLIFLLLLTVI-----LSSLPPTS------------------PRASPESGDLALVAT 37
M+RSLIFLL I +S+ P TS P+A D+ALVA
Sbjct: 1 MKRSLIFLLWFISISGVLAISTKPETSLLNLDSKGFDILKANSIVPQAP--KNDIALVAA 58
Query: 38 LNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-----NDP----DFYVDVGEDWKLYFHRK 88
L+GT++LV+ + WSF+ G IYSS+ ND DF++D G+DW+LY H
Sbjct: 59 LDGTIYLVEASSRKILWSFASGSSIYSSYQAFLDGDNDKQLSTDFFIDCGDDWELYRHNI 118
Query: 89 GIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144
GK +K + +++ P+V DG + +G +KT+VF VDAKSG +I + SD S
Sbjct: 119 SFGKREKLLLTPEKYVEGAPYVSKDG-VTVGSKKTTVFLVDAKSGTIINTFRSDAS 173
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561453|ref|XP_002521737.1| kinase, putative [Ricinus communis] gi|223539128|gb|EEF40724.1| kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 78/128 (60%), Gaps = 14/128 (10%)
Query: 34 LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFT---RNDPD----------FYVDVGED 80
LVA LNGT++ +T WSFS G PIYSS+ D D F++D G+D
Sbjct: 66 LVALLNGTIYFQETNSERVFWSFSSGAPIYSSYQASFNQDNDGENEFGPSTGFFIDYGDD 125
Query: 81 WKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140
W+LY H K MK S+++ +FM PHV +DGA++LG + T+VF V+AK+G ++ +++
Sbjct: 126 WQLYAHGKHSSGMKL-SMNIEDFMIITPHVSEDGAVILGSKITTVFVVEAKTGRLVQTYK 184
Query: 141 SDNSASTL 148
S + S+L
Sbjct: 185 SLDPPSSL 192
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357484205|ref|XP_003612390.1| Serine/threonine protein kinase/endoribonuclease IRE1 [Medicago truncatula] gi|355513725|gb|AES95348.1| Serine/threonine protein kinase/endoribonuclease IRE1 [Medicago truncatula] | Back alignment and taxonomy information |
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Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 33 ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDF-YVDVGEDWKLYFHRKGIG 91
ALVA L+GT++LV++ G WSFS G PIY S P ++ G+DW+L FH G
Sbjct: 66 ALVAGLDGTIYLVESASGRVIWSFSSGSPIYHSSANTPPSSGLIECGDDWELIFHDPHFG 125
Query: 92 KMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139
K + V +++ P V DGA++LG ++++VF VDAK+G ++ S+
Sbjct: 126 KTRLKE-SVADYVAVTPIVSKDGAVILGSKRSTVFEVDAKTGKLLRSY 172
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 161 | ||||||
| TAIR|locus:2053928 | 841 | IRE1A [Arabidopsis thaliana (t | 0.726 | 0.139 | 0.296 | 2.6e-05 | |
| ZFIN|ZDB-GENE-090312-15 | 950 | ern2 "endoplasmic reticulum to | 0.720 | 0.122 | 0.295 | 8.2e-05 | |
| UNIPROTKB|F1PHS1 | 930 | ERN2 "Uncharacterized protein" | 0.639 | 0.110 | 0.302 | 0.00021 |
| TAIR|locus:2053928 IRE1A [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 111 (44.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 37/125 (29%), Positives = 58/125 (46%)
Query: 24 RASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKL 83
R P + LV +G V L + WSFS G P++S + + + E +
Sbjct: 52 REPPTEPNTKLVVDRDGKVFLKQQPKETPYWSFSTGSPMHSLYQAPANNNTENATEITRP 111
Query: 84 YFHRKGIGKMKKPS-ID------VGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136
+ + + K + +D V EF R+ P V DDG + LG E TS + VD +SG +I
Sbjct: 112 HIIVEYLNNSKAATTVDGYHNWTVQEFFRQKPLVTDDG-VTLGSETTSAYLVDGRSGRLI 170
Query: 137 CSHES 141
++S
Sbjct: 171 HVYKS 175
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| ZFIN|ZDB-GENE-090312-15 ern2 "endoplasmic reticulum to nucleus signaling 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Score = 107 (42.7 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 36/122 (29%), Positives = 57/122 (46%)
Query: 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYF- 85
PES L V+TL+G++H V + G+ +W+ I +P F D D LY
Sbjct: 26 PES--LLFVSTLDGSLHAVSKQTGDIKWTLKEDPIIQVPEYFQEPGFLPDPN-DGSLYVL 82
Query: 86 -HRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144
++ G MK P + E ++ P DG L G ++ + F VD ++G S + +S
Sbjct: 83 GGKRKEGLMKLP-FTIQELVQSSPCRSSDGVLYTGKKQDTWFVVDPQTGEKQTSLSTSSS 141
Query: 145 AS 146
S
Sbjct: 142 DS 143
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| UNIPROTKB|F1PHS1 ERN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Score = 103 (41.3 bits), Expect = 0.00021, P = 0.00021
Identities = 33/109 (30%), Positives = 51/109 (46%)
Query: 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYF- 85
PES L LV+TL+G++H ++ + G+ +W+ I + F D D LY
Sbjct: 38 PES--LLLVSTLDGSLHALNKQTGDLKWTLKDDPIIQGPMYVTETAFLSDPA-DGSLYVL 94
Query: 86 -HRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSG 133
+K G MK P + E + P DG G ++ + F VD +SG
Sbjct: 95 GTQKQQGLMKLP-FTIPELVHASPCRSSDGVFYTGRKQDAWFVVDPESG 142
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 161 141 0.00091 102 3 11 22 0.44 31
30 0.47 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 591 (63 KB)
Total size of DFA: 152 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.09u 0.08s 14.17t Elapsed: 00:00:02
Total cpu time: 14.09u 0.08s 14.17t Elapsed: 00:00:02
Start: Fri May 10 23:01:19 2013 End: Fri May 10 23:01:21 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.III.709.1 | hypothetical protein (822 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 161 | |||
| cd09213 | 312 | cd09213, Luminal_IRE1_like, The Luminal domain, a | 3e-18 | |
| cd09769 | 295 | cd09769, Luminal_IRE1, The Luminal domain, a dimer | 6e-07 |
| >gnl|CDD|188873 cd09213, Luminal_IRE1_like, The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins | Back alignment and domain information |
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Score = 79.1 bits (195), Expect = 3e-18
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 11/130 (8%)
Query: 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS--FTRND------PDFYVDVGEDWKL 83
L LVATL+GT++ VD GE +WSF G P+YSS +R+ + D L
Sbjct: 1 LLLVATLDGTIYAVDASSGEIQWSFDGGGPLYSSYQSSRDGNAESSSTMLIPSLDGDGNL 60
Query: 84 YFHRKGIGKMKKPSIDVGEFMRRMPHVWD---DGALLLGHEKTSVFFVDAKSGGMICSHE 140
Y H KG G +++ + + + + P V D D +++G ++TSVF +DAK+G +I ++
Sbjct: 61 YQHDKGHGSLQRLPLTIEDLVEASPLVSDTNEDDVVVVGSKRTSVFALDAKTGKIIKTYR 120
Query: 141 SDNSASTLGS 150
+D ST GS
Sbjct: 121 ADGLPSTGGS 130
|
The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), eukaryotic translation Initiation Factor 2-Alpha Kinase 3 (EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are serine/threonine protein kinases (STKs) and are type I transmembrane proteins that are localized in the endoplasmic reticulum (ER). They are kinase receptors that are activated through the release of BiP, a chaperone bound to their luminal domains under unstressed conditions. This results in dimerization through their luminal domains, allowing trans-autophosphorylation of their kinase domains and activation. They play roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), contains an endoribonuclease domain in its cytoplasmic side and acts as an ER stress sensor. It is the oldest and most conserved component of the UPR in eukaryotes. Its activation results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. EIF2AK3, also called PKR-like Endoplasmic Reticulum Kinase (PERK), phosphorylates the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. It functions as the central regulator of translational control during the UPR pathway. In addition to the eIF-2 alpha subunit, EIF2AK3 also phosphorylates Nrf2, a leucine zipper transcription factor which regulates cellular redox status and promotes cell survival during the UPR. Length = 312 |
| >gnl|CDD|188875 cd09769, Luminal_IRE1, The Luminal domain, a dimerization domain, of the Serine/Threonine protein kinase, Inositol-requiring protein 1 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-07
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPI-----YSSFTRNDPDFYVDVGEDWKLYF 85
DL LV+T++G +H VD K G+ WS P+ +S+ + + P F V+ D LY
Sbjct: 2 DLLLVSTVDGGLHAVDRKTGKILWSLKAEDPLVEVPHHSTLSIDGPTFIVE-PRDGSLYV 60
Query: 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSA 145
G +KK + + ++ P DG L G ++T+ + VD ++G I
Sbjct: 61 LNPGNEGLKKLPFTIPQLVQSSPCRSSDGILYTGSKQTTWYTVDPRTGEKI--------- 111
Query: 146 STLGSG 151
LGSG
Sbjct: 112 QVLGSG 117
|
The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), a serine/threonine protein kinase (STK) and a type I transmembrane protein that is localized in the endoplasmic reticulum (ER). IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), is a kinase receptor that also contains an endoribonuclease domain in the cytoplasmic side. It plays roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1 acts as an ER stress sensor and is the oldest and most conserved component of the UPR in eukaryotes. During ER stress, IRE1 dimerizes through its luminal domain and forms oligomers, allowing the kinase domain to undergo trans-autophosphorylation. This leads to a conformational change that stimulates its endoribonuclease activity and results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. Mammals contain two IRE1 proteins, IRE1alpha (or ERN1) and IRE1beta (or ERN2). IRE1alpha is expressed in all cells and tissues while IRE1beta is found only in intestinal epithelial cells. Length = 295 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 161 | |||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.88 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.86 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 99.81 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.81 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 99.8 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 99.78 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 99.78 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.77 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.74 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 99.7 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.68 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 99.67 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 99.67 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 99.63 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.48 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.16 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 99.03 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 98.92 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 98.87 | |
| COG4993 | 773 | Gcd Glucose dehydrogenase [Carbohydrate transport | 98.79 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 98.72 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 98.67 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 98.66 | |
| COG4993 | 773 | Gcd Glucose dehydrogenase [Carbohydrate transport | 98.56 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 98.49 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.18 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.97 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.74 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.65 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 97.57 | |
| PTZ00421 | 493 | coronin; Provisional | 97.35 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 97.22 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.19 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.15 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.14 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 96.98 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.95 | |
| PF05567 | 335 | Neisseria_PilC: Neisseria PilC beta-propeller doma | 96.85 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 96.83 | |
| PTZ00420 | 568 | coronin; Provisional | 96.83 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 96.78 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 96.73 | |
| PTZ00420 | 568 | coronin; Provisional | 96.66 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.63 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.63 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 96.6 | |
| PTZ00421 | 493 | coronin; Provisional | 96.58 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.48 | |
| PF05567 | 335 | Neisseria_PilC: Neisseria PilC beta-propeller doma | 96.45 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 96.42 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 96.4 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.37 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 96.23 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 96.2 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 96.18 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 96.18 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 96.15 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 96.09 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.07 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 96.03 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 95.91 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 95.88 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 95.77 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 95.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.73 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 95.72 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 95.71 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 95.68 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 95.6 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.6 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 95.16 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 95.12 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 95.11 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 95.09 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 95.02 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 94.98 | |
| KOG2103 | 910 | consensus Uncharacterized conserved protein [Funct | 94.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 94.92 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 94.87 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.79 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 94.79 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 94.76 | |
| COG3419 | 1036 | PilY1 Tfp pilus assembly protein, tip-associated a | 94.71 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 94.62 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 94.56 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 94.51 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 94.48 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 94.29 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 94.2 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.17 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 94.13 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.11 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 94.09 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 93.95 | |
| KOG2103 | 910 | consensus Uncharacterized conserved protein [Funct | 93.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 93.86 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 93.85 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 93.79 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 93.79 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 93.65 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 93.6 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.53 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 93.47 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 93.35 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.28 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 93.05 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 92.84 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 92.76 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.74 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.65 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.15 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 91.96 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 91.79 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 91.66 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 91.55 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 91.35 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 91.3 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 91.26 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 91.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 90.93 | |
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 90.82 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 90.71 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 90.69 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 90.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 90.53 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 90.51 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 89.96 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 89.81 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 89.54 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.45 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 89.39 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 89.38 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 89.24 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 89.06 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 89.02 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 88.65 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 88.53 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 88.34 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 88.02 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 87.79 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 86.63 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 86.63 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 86.62 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 86.21 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 86.02 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 86.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 85.94 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 85.78 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 85.69 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 85.6 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 85.56 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 85.15 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 84.82 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 84.74 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 84.51 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 84.41 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 84.35 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 82.71 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 82.59 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 82.49 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 81.98 | |
| cd00028 | 116 | B_lectin Bulb-type mannose-specific lectin. The do | 81.89 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 81.48 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 81.32 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 80.59 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 80.38 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 80.09 |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=169.46 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=102.0
Q ss_pred CC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-----------CeecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 26 SP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-----------PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 26 s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----------~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
+| +.+++||+++.+|.|||+|++||+++|+++... .+.++|.+.++.+|+++. +|.|||+|++||++
T Consensus 64 sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~g~l~ald~~tG~~ 142 (394)
T PRK11138 64 HPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-KGQVYALNAEDGEV 142 (394)
T ss_pred ccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-CCEEEEEECCCCCC
Confidence 45 478999999999999999999999999998765 344567777888888774 56999999999999
Q ss_pred eccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 94 KKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 94 ~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+|++++...+.++|++.+ +.||+++.++.+||+|++||+++|+++...
T Consensus 143 -~W~~~~~~~~~ssP~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 143 -AWQTKVAGEALSRPVVSD-GLVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred -cccccCCCceecCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 999999999999999996 889999999999999999999999998763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=161.11 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=105.9
Q ss_pred CC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 26 SP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 26 s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
+| +.++.+|+++.+|.|||+|+.||+++|+++.+.++.++|.+.++.+|++.. ++.|||+|+.||++ +|+..++..+
T Consensus 60 ~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~-~g~l~ald~~tG~~-~W~~~~~~~~ 137 (377)
T TIGR03300 60 QPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTE-KGEVIALDAEDGKE-LWRAKLSSEV 137 (377)
T ss_pred ceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcC-CCEEEEEECCCCcE-eeeeccCcee
Confidence 44 578999999999999999999999999999999999999888888888875 45999999999999 9999999999
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
.++|++.+ +.||+++.++.+||+|++||+++|+++....
T Consensus 138 ~~~p~v~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 138 LSPPLVAN-GLVVVRTNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred ecCCEEEC-CEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence 99999986 8899999999999999999999999987553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=160.09 Aligned_cols=119 Identities=13% Similarity=0.229 Sum_probs=98.7
Q ss_pred CCCCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-------eec-ceEeeC-CCeEEecCCCCEEEEEECCCC
Q 031361 22 SPRASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-------IYS-SFTRND-PDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 22 ~~~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-------i~s-sp~~~d-~~~~V~~~ddg~Lyald~~tG 91 (161)
..+.+| +.++.||+++.||.|||+|++||+++|++++..+ +.+ .+.+.+ +.+|++.. +|.|||+|++||
T Consensus 52 ~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~g~v~AlD~~TG 130 (488)
T cd00216 52 GQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-DGRLVALDAETG 130 (488)
T ss_pred CcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-CCeEEEEECCCC
Confidence 345667 5799999999999999999999999999988664 111 122335 66777765 569999999999
Q ss_pred CeeccccCcccc------eecceeEeeCCeEEEEee---------CCEEEEEECCCCcEEEEecCCC
Q 031361 92 KMKKPSIDVGEF------MRRMPHVWDDGALLLGHE---------KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 92 ~~~~w~~~~~~~------V~ssP~v~~dg~VyvGs~---------d~~lyalDa~TG~~~W~~~~~~ 143 (161)
++ +|++++... +.++|.+.+ +.||+|+. ++.+||||++||+++|+++...
T Consensus 131 ~~-~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~ 195 (488)
T cd00216 131 KQ-VWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTE 195 (488)
T ss_pred CE-eeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccC
Confidence 99 999998876 789999997 88999974 6789999999999999998853
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=155.53 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=100.3
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc----
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF---- 103 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~---- 103 (161)
+.++.||+++.+|.|||+|++||+++|++++++++.++|.+.++.+|+... ++.|||+|++||++ +|+++....
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~-~g~l~ald~~tG~~-~W~~~~~~~~~~~ 195 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTS-NGMLQALNESDGAV-KWTVNLDVPSLTL 195 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECC-CCEEEEEEccCCCE-eeeecCCCCcccc
Confidence 368999999999999999999999999999999999999998888888775 45999999999999 999987643
Q ss_pred -eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 104 -MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 104 -V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
..++|++.+ +.||+++.++.++|+|++||+++|+++..
T Consensus 196 ~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~ 234 (394)
T PRK11138 196 RGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRIS 234 (394)
T ss_pred cCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccc
Confidence 247999986 78999999999999999999999998753
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=157.97 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=97.1
Q ss_pred CC-CEEEEEecCCeEEEEeCCCCceeEEEecCCC------eecceEeeCCCeEEecC--------CCCEEEEEECCCCCe
Q 031361 29 SG-DLALVATLNGTVHLVDTKRGESRWSFSMGKP------IYSSFTRNDPDFYVDVG--------EDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~-~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~------i~ssp~~~d~~~~V~~~--------ddg~Lyald~~tG~~ 93 (161)
.+ ++||+++.||.|||+|++||+++|+++++.+ +.++|.+.++.+|++.. .+|.|||+|+.||++
T Consensus 108 ~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 108 WDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred ccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 46 9999999999999999999999999999877 78899998887888753 357999999999999
Q ss_pred eccccCcc---------------------cceecceeEe-eCCeEEEEeeCC------------------EEEEEECCCC
Q 031361 94 KKPSIDVG---------------------EFMRRMPHVW-DDGALLLGHEKT------------------SVFFVDAKSG 133 (161)
Q Consensus 94 ~~w~~~~~---------------------~~V~ssP~v~-~dg~VyvGs~d~------------------~lyalDa~TG 133 (161)
+|++++. ..+.++|++. .+++||+|+.++ ++||||++||
T Consensus 188 -~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 -LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred -eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 9998774 2255678875 348899999775 8999999999
Q ss_pred cEEEEecCCC
Q 031361 134 GMICSHESDN 143 (161)
Q Consensus 134 ~~~W~~~~~~ 143 (161)
+++|+++...
T Consensus 267 ~~~W~~~~~~ 276 (488)
T cd00216 267 KVKWFYQTTP 276 (488)
T ss_pred CEEEEeeCCC
Confidence 9999998654
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=161.65 Aligned_cols=117 Identities=17% Similarity=0.290 Sum_probs=94.5
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc--------------------------eEeeCCCeEEe
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS--------------------------FTRNDPDFYVD 76 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss--------------------------p~~~d~~~~V~ 76 (161)
+.+| +.+|++|++|.++.|+|+|++||+++|+|+.+.++.+. |+..++.+|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~ 266 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP 266 (764)
T ss_pred ccCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEe
Confidence 4456 57999999999999999999999999999987664321 22233456776
Q ss_pred cCCCCEEEEEECCCCCeeccccCccc----------------ceecceeEeeCCeEEEEee----------CCEEEEEEC
Q 031361 77 VGEDWKLYFHRKGIGKMKKPSIDVGE----------------FMRRMPHVWDDGALLLGHE----------KTSVFFVDA 130 (161)
Q Consensus 77 ~~ddg~Lyald~~tG~~~~w~~~~~~----------------~V~ssP~v~~dg~VyvGs~----------d~~lyalDa 130 (161)
.. |++|||+|++||++ .|.|..+. .+.++|++.+ ++||+|+. +|.++|+|+
T Consensus 267 T~-Dg~LiALDA~TGk~-~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 267 TS-DARLIALDADTGKL-CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred cC-CCeEEEEECCCCCE-EEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEEEEEEC
Confidence 65 66999999999999 88776543 2468899997 88999975 689999999
Q ss_pred CCCcEEEEecCCC
Q 031361 131 KSGGMICSHESDN 143 (161)
Q Consensus 131 ~TG~~~W~~~~~~ 143 (161)
+||+++|+|+..+
T Consensus 344 ~TGkl~W~~~~g~ 356 (764)
T TIGR03074 344 NTGALVWAWDPGN 356 (764)
T ss_pred CCCcEeeEEecCC
Confidence 9999999999753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-18 Score=155.38 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=97.5
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCee-----------cceEeeCCCeEEecCCCCEEEEEECCCC
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY-----------SSFTRNDPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~-----------ssp~~~d~~~~V~~~ddg~Lyald~~tG 91 (161)
+.+| +.+++||+++.+|.|||+|++||+++|+++...+.. ..+++.++.+|+... +++|+|+|++||
T Consensus 62 ~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg~l~ALDa~TG 140 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DARLVALDAKTG 140 (527)
T ss_pred ccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CCEEEEEECCCC
Confidence 4566 579999999999999999999999999998754311 223455667787765 559999999999
Q ss_pred CeeccccCccc-----ceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCCCC
Q 031361 92 KMKKPSIDVGE-----FMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 92 ~~~~w~~~~~~-----~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
++ .|++.+.+ .+.++|++.+ ++||+|+. ++.++|+|++||+++|++.+...
T Consensus 141 k~-~W~~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 141 KV-VWSKKNGDYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred CE-EeecccccccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 99 99887653 4778999997 88999975 68999999999999999998654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-18 Score=144.72 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=99.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce---
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM--- 104 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V--- 104 (161)
+.++.+|+++.||.|||+|+.||+++|++++++++.++|.+.++.+|+.+. +|.||++|+++|++ +|+++.....
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~-~g~l~a~d~~tG~~-~W~~~~~~~~~~~ 180 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTN-DGRLTALDAATGER-LWTYSRVTPALTL 180 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECC-CCeEEEEEcCCCce-eeEEccCCCceee
Confidence 468999999999999999999999999999999999999888777887764 56999999999999 9988776532
Q ss_pred --ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 105 --RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 105 --~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.++|++.+ +.+|+|+.++.++++|++||+++|+++..
T Consensus 181 ~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 181 RGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred cCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 36888886 78999999999999999999999997643
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-17 Score=127.43 Aligned_cols=112 Identities=23% Similarity=0.332 Sum_probs=94.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc-Ccc-----c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI-DVG-----E 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~-~~~-----~ 102 (161)
.++.+|+++.+|.|||+|+.||+++|+++.++++...|...++.+|+...++ .||++|..||++ .|+. ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~-~l~~~d~~tG~~-~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDG-SLYALDAKTGKV-LWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTS-EEEEEETTTSCE-EEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccccee-eeEecccCCcce-eeeecccccccccc
Confidence 7999999999999999999999999999999998888888888888888544 999999999999 8884 333 1
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
....+|.+.+ +.+|++..++.++++|++||+++|++....
T Consensus 113 ~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 113 RSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp B--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 2334555664 789999999999999999999999998843
|
... |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=134.65 Aligned_cols=114 Identities=22% Similarity=0.364 Sum_probs=97.4
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC--CeecceE-eeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-c
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFT-RNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-F 103 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~-~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~ 103 (161)
..+++||+++.||.|+|+|+.+|+.+|++.+.. ...++|. ..++.+|++..++ ++||+|+++|.+ +|.+++.. +
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~-~W~~~~~~~~ 143 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTL-VWSRNVGGSP 143 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc-eEEEEECCCCcE-EEEEecCCCe
Confidence 479999999999999999999999999999875 4444454 4578889888655 999999999999 99999998 4
Q ss_pred -eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 104 -MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 104 -V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+.+.|++. |+.||+++.++++||||+.||+++|+++....
T Consensus 144 ~~~~~~v~~-~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 144 YYASPPVVG-DGTVYVGTDDGHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred EEecCcEEc-CcEEEEecCCCeEEEEEccCCcEEEEEecCCc
Confidence 44455555 59999999999999999999999999988763
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-16 Score=121.67 Aligned_cols=102 Identities=25% Similarity=0.400 Sum_probs=84.8
Q ss_pred cCCeEEEEeCCCCceeEEEecCCCeecce---EeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCC
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGKPIYSSF---TRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDG 114 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~~i~ssp---~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg 114 (161)
.+|.|+|+|+.+|+++|++..+.++.+.+ ...++.+|+.. .++.||++|+.||++ .|+++..+.+...|.+.+ +
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~-~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKV-LWRFDLPGPISGAPVVDG-G 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEE-EEEEECSSCGGSGEEEET-T
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCE-EEEeeccccccceeeecc-c
Confidence 48999999999999999998854444333 33566677774 566999999999999 999999999999997775 8
Q ss_pred eEEEEeeCCEEEEEECCCCcEEEEe-cCC
Q 031361 115 ALLLGHEKTSVFFVDAKSGGMICSH-ESD 142 (161)
Q Consensus 115 ~VyvGs~d~~lyalDa~TG~~~W~~-~~~ 142 (161)
.||+++.++.+|++|++||+++|+. ...
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred ccccccceeeeEecccCCcceeeeecccc
Confidence 8999999999999999999999994 554
|
... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-16 Score=140.03 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=93.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-----CeecceEeeCCCeEEecC-----CCCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDPDFYVDVG-----EDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----~i~ssp~~~d~~~~V~~~-----ddg~Lyald~~tG~~~~w~ 97 (161)
+.+++||+++.||.|+|+|++||+++|+++... .+.++|.+.++.+|++.. .+|.|+|+|++||++ +|+
T Consensus 118 v~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~-lW~ 196 (527)
T TIGR03075 118 LYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL-VWR 196 (527)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce-eEe
Confidence 467999999999999999999999999998642 467889888888888753 257999999999999 887
Q ss_pred cCccc--------------------------------ceecceeEee-CCeEEEEeeC-----C-----------EEEEE
Q 031361 98 IDVGE--------------------------------FMRRMPHVWD-DGALLLGHEK-----T-----------SVFFV 128 (161)
Q Consensus 98 ~~~~~--------------------------------~V~ssP~v~~-dg~VyvGs~d-----~-----------~lyal 128 (161)
+.+.. .+..+|.+.. .+.||+|+.+ + +++||
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 75531 2333445543 3789999833 2 89999
Q ss_pred ECCCCcEEEEecCCCC
Q 031361 129 DAKSGGMICSHESDNS 144 (161)
Q Consensus 129 Da~TG~~~W~~~~~~~ 144 (161)
|++|||++|.|+...|
T Consensus 277 d~~TG~~~W~~Q~~~~ 292 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPH 292 (527)
T ss_pred ccccCCEEEeeeCCCC
Confidence 9999999999998554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-16 Score=131.92 Aligned_cols=110 Identities=21% Similarity=0.332 Sum_probs=94.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC--CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc----c
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV----G 101 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~----~ 101 (161)
..+|++|+++.||.+||+|.++|+++|+++... .+.+.+...++.+|+.. +++++||+|+.||++ +|.++. .
T Consensus 109 ~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~-~W~~~~~~~~~ 186 (370)
T COG1520 109 GSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTL-KWTYETPAPLS 186 (370)
T ss_pred EeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcE-EEEEecCCccc
Confidence 357999999999999999999999999999988 34455556667777776 677999999999999 998665 4
Q ss_pred cceecceeEeeCCeEEEEee--CCEEEEEECCCCcEEEEec
Q 031361 102 EFMRRMPHVWDDGALLLGHE--KTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~--d~~lyalDa~TG~~~W~~~ 140 (161)
..+.++|.+.+ +.||+++. ++.+||+|+++|..+|+.+
T Consensus 187 ~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 187 LSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cccccCceeec-ceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 56888899775 88999998 8899999999999999954
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-15 Score=139.09 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=90.6
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe----------------ecceEeeCCCeEEecC--C-------CCE
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI----------------YSSFTRNDPDFYVDVG--E-------DWK 82 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i----------------~ssp~~~d~~~~V~~~--d-------dg~ 82 (161)
+.++.||+++.||+|||+|++||+++|+|.+++.+ .++|.+.++.+||+.. | +|.
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 56889999999999999999999999999876543 4778888888998753 1 579
Q ss_pred EEEEECCCCCeeccccCcccceecc------------e------eEe-eCCeEEEEe------------------eCCEE
Q 031361 83 LYFHRKGIGKMKKPSIDVGEFMRRM------------P------HVW-DDGALLLGH------------------EKTSV 125 (161)
Q Consensus 83 Lyald~~tG~~~~w~~~~~~~V~ss------------P------~v~-~dg~VyvGs------------------~d~~l 125 (161)
++|+|++||++ +|++.+.++.... | .++ +.+.||++. ..+++
T Consensus 338 I~A~Da~TGkl-~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 338 IRAFDVNTGAL-VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEECCCCcE-eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 99999999999 9999875432221 1 111 125678754 34789
Q ss_pred EEEECCCCcEEEEecCCCC
Q 031361 126 FFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 126 yalDa~TG~~~W~~~~~~~ 144 (161)
+|||++|||++|.|++..|
T Consensus 417 vALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHH 435 (764)
T ss_pred EEEeCCCCceEEEecccCC
Confidence 9999999999999998554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=114.24 Aligned_cols=119 Identities=21% Similarity=0.233 Sum_probs=104.9
Q ss_pred CCCCC--C---CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc
Q 031361 23 PRASP--E---SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 23 ~~~s~--~---~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~ 97 (161)
+++|| + ...+||+||..|.+-|+|+.+|+++|+-..+..|..++.+.++-+.++|..+ .||.++.+||.+ .|+
T Consensus 11 VDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g-~lYfl~~~tGs~-~w~ 88 (354)
T KOG4649|consen 11 VDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSG-GLYFLCVKTGSQ-IWN 88 (354)
T ss_pred ccCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccC-cEEEEEecchhh-eee
Confidence 35666 2 2479999999999999999999999999999999999888777788899866 899999999999 999
Q ss_pred cCcccceecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 98 IDVGEFMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 98 ~~~~~~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|.+-+.|..+|..+-+ +.+|.||.|+++||||+++=+-+|+-+-++
T Consensus 89 f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 89 FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred eeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 9999999999997433 789999999999999999999999966443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=97.29 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=104.5
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccCcc
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
|-|+ +.+|.|.+|-..|.||-++.+||+..|.|.+-+.+...++..-....|||+ .|+++||+|.++=+- .|+.+.+
T Consensus 56 E~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-Vykskcg 134 (354)
T KOG4649|consen 56 ECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCG 134 (354)
T ss_pred eeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccC
Confidence 5566 789999999999999999999999999999999999988876445555554 477999999998887 8899999
Q ss_pred cceecceeEee-CCeEEEEeeCCEEEEEECCCC--cEEEEecCCC
Q 031361 102 EFMRRMPHVWD-DGALLLGHEKTSVFFVDAKSG--GMICSHESDN 143 (161)
Q Consensus 102 ~~V~ssP~v~~-dg~VyvGs~d~~lyalDa~TG--~~~W~~~~~~ 143 (161)
+-+-.+|++.. ++.+|+.+..|.+.|+..+++ ...|.+....
T Consensus 135 G~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~ 179 (354)
T KOG4649|consen 135 GGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFG 179 (354)
T ss_pred CceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCC
Confidence 99999999976 688999999999999999999 8899887544
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-10 Score=67.51 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=34.5
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceE
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFT 67 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~ 67 (161)
|.||+++.||.|||+|++||+.+|+|+++.++.++|.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p~ 37 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSPI 37 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCBE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCcC
Confidence 6899999999999999999999999999999888774
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-09 Score=100.64 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=94.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceeccee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
+...++.|.| .++|.+.++|...|+.. +.|+.++|.....-.+.-.-.+|+||.+-- ...+.+.+|++.+.+..+|+
T Consensus 27 e~~~~~stid-~l~a~s~~~g~~~~~l~-~~pvv~~~~~~~~~~fl~~p~dgsly~l~~-~~sL~Klpftipelv~~~pc 103 (903)
T KOG1027|consen 27 ENLLLVSTID-SLHAPSSETGFIKWTLS-DDPVVASPDGVLQPAFLPDPRDGSLYTLGN-NLSLTKLPFTIPELVNASPC 103 (903)
T ss_pred cccccccccc-cccCccccccceeeeec-cCccccCCccccccccCCCccccceeeccC-CCccccCCccchhhhccCcc
Confidence 4888999999 99999999999999984 556776676554444444446789998865 45666999999999999999
Q ss_pred EeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 110 VWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 110 v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
-..||.+|.|++++..|.||++||+..|+|.+..
T Consensus 104 rssdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~ 137 (903)
T KOG1027|consen 104 RSSDGILYSGSKQDIWYLVDPKTGEIDYTFNTAE 137 (903)
T ss_pred cCCCCeEEecccccceEEecCCccceeEEEecCC
Confidence 9888999999999999999999999999999876
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-09 Score=65.38 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=29.0
Q ss_pred CCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCC
Q 031361 91 GKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 91 G~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~T 132 (161)
|++ +|+++++..+.++|++.+ +.||+|+.|+++||||++|
T Consensus 1 G~~-~W~~~~~~~~~~~~~v~~-g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKV-LWSYDTGGPIWSSPAVAG-GRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-E-EEEEE-SS---S--EECT-SEEEEE-TTSEEEEEETT-
T ss_pred Cce-eEEEECCCCcCcCCEEEC-CEEEEEcCCCEEEEEeCCC
Confidence 567 999999999999999986 8999999999999999986
|
|
| >COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-08 Score=90.02 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=86.0
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe------e------CCC------eEEecCCCCEEE
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR------N------DPD------FYVDVGEDWKLY 84 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~------~------d~~------~~V~~~ddg~Ly 84 (161)
|.+| ..+|++|+.+.--+++|+|+.||+++|+|+..-+..-.++. + +.. +|.... |.+|.
T Consensus 207 e~tPLkvgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~-DarlI 285 (773)
T COG4993 207 EVTPLKVGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTA-DARLI 285 (773)
T ss_pred cccceEECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecC-CceEE
Confidence 5566 68999999999999999999999999999875443322221 1 222 565554 55999
Q ss_pred EEECCCCCeeccccCccc---------------ceeccee-EeeCCeEEEEeeC---------CEEEEEECCCCcEEEEe
Q 031361 85 FHRKGIGKMKKPSIDVGE---------------FMRRMPH-VWDDGALLLGHEK---------TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 85 ald~~tG~~~~w~~~~~~---------------~V~ssP~-v~~dg~VyvGs~d---------~~lyalDa~TG~~~W~~ 139 (161)
|+|++|||+ -|.|..++ ++.+||- +...+.|+-|+-+ +-+.+.|..||+++|.+
T Consensus 286 ALdA~tGkv-c~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~ 364 (773)
T COG4993 286 ALDADTGKV-CWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAG 364 (773)
T ss_pred EEeCCCCcE-eheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEcc
Confidence 999999999 88886553 3444444 4443433444422 35789999999999999
Q ss_pred cCCCCC
Q 031361 140 ESDNSA 145 (161)
Q Consensus 140 ~~~~~~ 145 (161)
+..+.-
T Consensus 365 D~gnpD 370 (773)
T COG4993 365 DPGNPD 370 (773)
T ss_pred CCCCCC
Confidence 987653
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-08 Score=60.45 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=29.7
Q ss_pred CeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 114 GALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 114 g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
|+||+++.++.|||||++||+++|+|+......
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~ 33 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVD 33 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGG
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCc
Confidence 469999999999999999999999999876543
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-08 Score=59.41 Aligned_cols=40 Identities=35% Similarity=0.589 Sum_probs=28.0
Q ss_pred CceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCC
Q 031361 50 GESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 50 G~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~t 90 (161)
|+++|++++++++.++|++.++.+|+... +|+|||+|++|
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS---S--EECTSEEEEE-T-TSEEEEEETT-
T ss_pred CceeEEEECCCCcCcCCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 89999999999999999998888998886 56999999875
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-08 Score=55.84 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=28.9
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
|.+..|+.+|+++.++.|||+|++||+++|+++
T Consensus 1 ~~~~~~~~v~~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred CcEEECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence 455556899999999999999999999999974
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-07 Score=84.98 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=81.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc----------------eEeeCCCeEEecC---------CCCEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS----------------FTRNDPDFYVDVG---------EDWKL 83 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss----------------p~~~d~~~~V~~~---------ddg~L 83 (161)
-...||..+.|.+|-|+|++||++.|+|..++.++-. |.+....++++.. ..|-+
T Consensus 271 c~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVi 350 (773)
T COG4993 271 CPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVI 350 (773)
T ss_pred CceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccc
Confidence 3456999999999999999999999999876653321 1221222222221 12456
Q ss_pred EEEECCCCCeeccccCcccceeccee------------E-----ee--CCeEEEEeeC------------------CEEE
Q 031361 84 YFHRKGIGKMKKPSIDVGEFMRRMPH------------V-----WD--DGALLLGHEK------------------TSVF 126 (161)
Q Consensus 84 yald~~tG~~~~w~~~~~~~V~ssP~------------v-----~~--dg~VyvGs~d------------------~~ly 126 (161)
.++|..+|++ .|.++.+.+-..+|. . +| -+.||++-.+ .++.
T Consensus 351 r~fdv~tG~l-~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssiv 429 (773)
T COG4993 351 RGFDVLTGKL-TWAGDPGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIV 429 (773)
T ss_pred cccccccCce-EEccCCCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeE
Confidence 7789999999 999988766544443 1 11 2679987544 5899
Q ss_pred EEECCCCcEEEEecCCCC
Q 031361 127 FVDAKSGGMICSHESDNS 144 (161)
Q Consensus 127 alDa~TG~~~W~~~~~~~ 144 (161)
|+|+.||+++|.|++..|
T Consensus 430 AlD~~TG~~kW~yQtvhh 447 (773)
T COG4993 430 ALDATTGKLKWVYQTVHH 447 (773)
T ss_pred EecCCCcceeeeeeccCc
Confidence 999999999999998765
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-07 Score=53.50 Aligned_cols=29 Identities=31% Similarity=0.601 Sum_probs=26.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS 57 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~ 57 (161)
.++.+|+++.||.|||+|+++|+++|+++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence 46799999999999999999999999974
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.8e-05 Score=59.12 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=74.9
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
++++.++.||.|+.+|..+|+.+.+++....+.+ .... |+. +|+-+.+++.++.+|..+|+. ...+..+..+. ..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~-l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~-~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRG-ITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGPDPE-LF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCc-eEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCCCcc-EE
Confidence 5667788999999999999999999986554432 2332 443 556666677999999999987 33333332222 22
Q ss_pred eEeeC-CeEEEEe-eCCEEEEEECCCCcEEEEecC
Q 031361 109 HVWDD-GALLLGH-EKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 109 ~v~~d-g~VyvGs-~d~~lyalDa~TG~~~W~~~~ 141 (161)
.+..| +.+|+.+ .++.++.+|.++++.+.++..
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 33333 4477654 578999999999999888764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00027 Score=53.86 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=74.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceec
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRR 106 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~s 106 (161)
+..++.++.||.|+..|..+++++.+++... ++.. .... ++..++.+..++.++.+|..+++. .-.++.. +.+.+
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~ 224 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS-VAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNS 224 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccce-EEECCCcCEEEEecCCCcEEEEECCCCce-ecchhhcCCceEE
Confidence 5666777779999999999999999998654 3433 2332 343454555577999999998877 4444222 23332
Q ss_pred ceeEeeCCeEEE-EeeCCEEEEEECCCCcEEEEec
Q 031361 107 MPHVWDDGALLL-GHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~dg~Vyv-Gs~d~~lyalDa~TG~~~W~~~ 140 (161)
.....++.+++ ++.++.++..|..+++....+.
T Consensus 225 -~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 225 -VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred -EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 33333344554 5559999999999999998887
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00042 Score=52.81 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~s 106 (161)
.+..+++++.||.++..|..+++...++.... ++..-....++..++.+..++.++.+|..+++. ...+.... .+.+
T Consensus 62 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~ 140 (289)
T cd00200 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNS 140 (289)
T ss_pred CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEE
Confidence 34689999999999999999999999987544 444322222445666666678999999988877 44444222 2322
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
--...++..++.|+.++.++..|..+++.+..+...
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 222222244555666999999999999999888743
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00063 Score=59.56 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=77.3
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.||.. .+|.|.-+|..|.+++-++++++..+...... |+. +||-+ .||.+..+|..++++ .-..+++..-.+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~~-v~~i~~G~~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGKV-VATIKVGGNPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSSE-EEEEE-SSEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCcccE-EEEEecCCCcce
Confidence 45666655 58999999999999999999988777655544 443 66655 467999999999998 666777755444
Q ss_pred ceeEeeCCeEEEEe-eCCEEEEEECCCCcEEEEecCCCCC
Q 031361 107 MPHVWDDGALLLGH-EKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 107 sP~v~~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
--+..++..+|++. ..+.+..+|++|.+++.+..+....
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeeccccccc
Confidence 33333334577776 6889999999999999998776543
|
... |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00038 Score=58.73 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCe-EEecCCCCEEEEEECCCCCeeccccCcc----c
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDF-YVDVGEDWKLYFHRKGIGKMKKPSIDVG----E 102 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~-~V~~~ddg~Lyald~~tG~~~~w~~~~~----~ 102 (161)
+.+-.++.||.||+++-.|.+.|++-=-+ .+.||.+.....|+.- .+++. |+.|.-+|..||++ .-.++-. .
T Consensus 153 v~~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l-~stlrLlDk~tGkl-L~sYkGhkn~ey 229 (307)
T KOG0316|consen 153 VAEHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSL-DSTLRLLDKETGKL-LKSYKGHKNMEY 229 (307)
T ss_pred ecccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeec-cceeeecccchhHH-HHHhccccccee
Confidence 36777889999999999999999875443 5677776555556654 45555 55999999999998 4444322 2
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCC--CCcCCCCCceeee
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSA--STLGSGLPMKKSF 158 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~--~~~~~~~~~~~~~ 158 (161)
.+.+.-.-++ -.|+-||+||.+|.-|..+++++-++...... ..+.-|..|.+-+
T Consensus 230 kldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 230 KLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFI 286 (307)
T ss_pred eeeeeecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcccee
Confidence 3555544454 77999999999999999999999999877665 3444455554443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.005 Score=48.93 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCC-CEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED-WKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~dd-g~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.+|+++ .|+.|+.+|..+++.+.+++.+....+-....|+..++.+.++ ..++.+|..+++. ......+... .
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-~ 160 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVLVDQRP-R 160 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEEcCCCc-c
Confidence 455677664 5899999999999999988765443331112355555544443 3466678887766 3222222211 1
Q ss_pred ceeEeeCCe-EEEEe-eCCEEEEEECCCCcEEEEec
Q 031361 107 MPHVWDDGA-LLLGH-EKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~dg~-VyvGs-~d~~lyalDa~TG~~~W~~~ 140 (161)
+.....|+. +++++ .++.++.+|.++|+.+-++.
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 223343444 65665 58999999999999876654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.01 Score=54.03 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=73.5
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCc-------eeEEEecCC-CeecceEee-C-CCeEEecCCCCEEEEEECCCCCeecc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGE-------SRWSFSMGK-PIYSSFTRN-D-PDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~-------~~W~f~t~~-~i~ssp~~~-d-~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
|..+..++.|+.||+|+..|..++. ++-++.... ++. ..... + +..++-++.|+.+...|..+|+. .-
T Consensus 85 P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~ 162 (493)
T PTZ00421 85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDVERGKA-VE 162 (493)
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EE
Confidence 4456789999999999999987763 333343221 222 12222 2 24555556788999999998876 33
Q ss_pred ccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 97 SIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 97 ~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.+... +.|.+--...+...++.|+.|+++...|+++|+.+.++...
T Consensus 163 ~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 163 VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 33322 23433222233345778999999999999999998877543
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0042 Score=53.14 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred cCCeEEEEeCCCCceeEEEecCCC-------------eecceEeeCCCeEE-------------e-c----CCCCEEEEE
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGKP-------------IYSSFTRNDPDFYV-------------D-V----GEDWKLYFH 86 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~~-------------i~ssp~~~d~~~~V-------------~-~----~ddg~Lyal 86 (161)
-.|.++.+|. +.+++|++....+ .+.--...+++..| + + .-|+.++-+
T Consensus 23 g~G~~~~lD~-~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~Ei 101 (299)
T PF14269_consen 23 GYGSYVILDS-SYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEI 101 (299)
T ss_pred ccceEEEECC-CCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEe
Confidence 3477999999 6999999988772 33222223444444 0 1 124578889
Q ss_pred ECCCCCeeccccCcccceecceeE---------------------------eeCCeEEEEeeC-CEEEEEECCCCcEEEE
Q 031361 87 RKGIGKMKKPSIDVGEFMRRMPHV---------------------------WDDGALLLGHEK-TSVFFVDAKSGGMICS 138 (161)
Q Consensus 87 d~~tG~~~~w~~~~~~~V~ssP~v---------------------------~~dg~VyvGs~d-~~lyalDa~TG~~~W~ 138 (161)
|..||++ .|.+.+-+-+...+.. .++|.+++.++. ..+|.||++||+++|+
T Consensus 102 Di~Tgev-lfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~ 180 (299)
T PF14269_consen 102 DIETGEV-LFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWR 180 (299)
T ss_pred ccCCCCE-EEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEE
Confidence 9999999 8887766544322211 123556676644 4899999999999999
Q ss_pred ecCC
Q 031361 139 HESD 142 (161)
Q Consensus 139 ~~~~ 142 (161)
....
T Consensus 181 lgG~ 184 (299)
T PF14269_consen 181 LGGK 184 (299)
T ss_pred eCCC
Confidence 9765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0041 Score=53.73 Aligned_cols=103 Identities=16% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
...+.+++++=||.|.-.|..+-+++=+|+.+.|+....-+.+...++++.|+ .+..+|..+|.. ----+=.+.|.+-
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg-~vr~~Dln~~~~-~~igth~~~i~ci 100 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDG-QVRRYDLNTGNE-DQIGTHDEGIRCI 100 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCc-eEEEEEecCCcc-eeeccCCCceEEE
Confidence 45688899999999999999999999999999999987666566788888755 999999888876 2111222345554
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~T 132 (161)
-....++.|+-||||.++-..|+++
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccc
Confidence 4444457799999999999999984
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.01 Score=52.12 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=72.3
Q ss_pred CCCCCCEEEEEecCCeEEEEe-----CCCCceeEEEecCCCe-------ecce-Eee--CCCeEEecC---------CCC
Q 031361 26 SPESGDLALVATLNGTVHLVD-----TKRGESRWSFSMGKPI-------YSSF-TRN--DPDFYVDVG---------EDW 81 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd-----~~tG~~~W~f~t~~~i-------~ssp-~~~--d~~~~V~~~---------ddg 81 (161)
++..+..+|+..+ |+||.+| .... ..|..-+.+.. --.+ +.. .+.+||-.. .+.
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 4445666666665 9999999 5554 44554332211 1111 222 235777432 124
Q ss_pred EEEEEECCCCCeeccccCcccceecceeEeeCC-eEEEEe-eCCEEEEEECCCCcEEEEecC
Q 031361 82 KLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDG-ALLLGH-EKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 82 ~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg-~VyvGs-~d~~lyalDa~TG~~~W~~~~ 141 (161)
++..+|..|++. .-++.+++.+.+--+.-|+. .+|+-+ .++.+..+|+++||.+.+...
T Consensus 280 ~V~ViD~~t~kv-i~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 280 FLFVVDAKTGKR-LRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEEEEECCCCeE-EEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 899999999999 77777777665544444434 677777 467799999999999999833
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=51.88 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=78.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe-cCCCee---cceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIY---SSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~-t~~~i~---ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+.++-.|..+|.|.-.+..+|..+|++. ..+.|. =+|.+ ..+..+.+||+++.....++.+.+....-...+
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a---~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA---HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc---cEEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence 45566678999999999999999999996 333332 33322 445555578899999888754423333322233
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.+--++-+.+++..|..|+++.+-|++||.+.-+.+..+
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 333333333678999999999999999999999988544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.015 Score=49.66 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=86.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+..++-.+.|++|+.-|.+||+..=++.+..++.+--...|++++.- .+++.+-.+|+++=.+ .-.+++..-|.++-
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~-lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGL-LKSYKMPCNVESAS 231 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEE-ecCceeEEeccccccc-eeeccCcccccccc
Confidence 456666669999999999999999999999998887555556655433 3566888899988777 66788888888887
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
+.-+.+..+.|..|..+|..|-.||+.+=.|
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 7665454446899999999999999998876
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.023 Score=53.85 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.+..+..++.||.|+..|..+++.+.+++.. ++|.+ .... +++.++-++.|+.+...|..+|.. .-.+.....+.
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~-l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~~~v~ 621 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWS-IDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTKANIC 621 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEE-EEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecCCCeE
Confidence 4678889999999999999999999998653 34443 2332 456677777788999999988866 33333333333
Q ss_pred cceeEeeC-CeEEEEeeCCEEEEEECCCCcE
Q 031361 106 RMPHVWDD-GALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 106 ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~ 135 (161)
+.-....+ ..+.+|+.|+.++..|.++++.
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 33222222 4567899999999999988763
|
|
| >PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0075 Score=52.35 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCEEEEEecCCeEEEE-----eCCCCceeEEEecCCC---------------ee---------------cceEee----C
Q 031361 30 GDLALVATLNGTVHLV-----DTKRGESRWSFSMGKP---------------IY---------------SSFTRN----D 70 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAv-----d~~tG~~~W~f~t~~~---------------i~---------------ssp~~~----d 70 (161)
+..++||+-||.|||+ |.++|++.|.|-...- +. .+|.+. +
T Consensus 13 g~~~~vGANDGmLHaF~~~~~d~~~g~E~~a~iP~~~~~~~~~~~~~~~~~~l~~l~~~~y~~h~y~vDG~~~~~d~~~~ 92 (335)
T PF05567_consen 13 GAYLAVGANDGMLHAFNANDGDGRTGEEKFAFIPGELLRELLAAQPSAVLPNLKNLTDPDYSGHRYYVDGSPTVGDVDTG 92 (335)
T ss_dssp -SHHHEE-STT-EEEE---ESSS----EEEEE--------------HHHHCH-----------HHHHHH---EEEEEEET
T ss_pred CCeeEEEccCceEEEEEecCCCCccccceEEEcCCccccccchhhhhhhhhhhhhhccCCCcCcceeecCCeEEEEeecC
Confidence 3355689999999999 4456799999965210 00 111110 1
Q ss_pred C---CeEEecC-C-CCEEEEEECC-----CCC--eecc-ccC---------cccceecceeEee--CC--eEEEEee---
Q 031361 71 P---DFYVDVG-E-DWKLYFHRKG-----IGK--MKKP-SID---------VGEFMRRMPHVWD--DG--ALLLGHE--- 121 (161)
Q Consensus 71 ~---~~~V~~~-d-dg~Lyald~~-----tG~--~~~w-~~~---------~~~~V~ssP~v~~--dg--~VyvGs~--- 121 (161)
+ .+.|+.. . +..+||||.. +.. ..+| ... ++ +..+.|.+.. ++ .++||+-
T Consensus 93 ~~wktilvggmg~GG~~~yALDVT~~d~~~p~~~~l~~~~~~~~~~~~~~~LG-~t~s~P~I~~~~~g~w~~i~g~Gy~~ 171 (335)
T PF05567_consen 93 GSWKTILVGGMGRGGRGYYALDVTNPDSDDPTSPSLLDVKNDGSDGADDSDLG-QTWSKPQIAKVKNGKWVVIFGSGYNS 171 (335)
T ss_dssp TEEEEEEEEE-TTS-SEEEEEE-S-----SCCC-EEETT-TT------------B--S--EEEEETTSSEEEEEE--BS-
T ss_pred CCceEEEEeCCCCCcceEEEEecccccccCCCccccEecccCccccccccccC-ccccCCEEEEccCCcEEEEEccCCCC
Confidence 1 2233322 2 3479999987 332 1122 211 22 4567888743 33 3667642
Q ss_pred --------CCEEEEEECCC-CcEEEEecCCCCC
Q 031361 122 --------KTSVFFVDAKS-GGMICSHESDNSA 145 (161)
Q Consensus 122 --------d~~lyalDa~T-G~~~W~~~~~~~~ 145 (161)
...||.+|++| |+++|++......
T Consensus 172 ~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~~~~ 204 (335)
T PF05567_consen 172 DDVDSSSGGAALYILDADTTGALIKKIDVPGGS 204 (335)
T ss_dssp TT-------EEEEEEETTT---EEEEEEE--ST
T ss_pred CcccccCCCcEEEEEECCCCCceEEEEecCCCC
Confidence 36899999999 9999999865543
|
PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.017 Score=52.26 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCCCEEEEEe----cCCeEEEEeCCCCceeEEEecCCCeecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 28 ESGDLALVAT----LNGTVHLVDTKRGESRWSFSMGKPIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 28 ~~~~~V~vgs----~DG~lyAvd~~tG~~~W~f~t~~~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
..+++.++.. ..+..|++|. +|.++|.+.....-... -...++.+++... ..++.+|. .|++ .|.+++.+
T Consensus 112 ~~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v-~~~~~l~~ 186 (477)
T PF05935_consen 112 MEDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKV-IWEYDLPG 186 (477)
T ss_dssp -TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--E-EEEEE--T
T ss_pred cCCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCE-EEeeecCC
Confidence 4555555555 5889999999 69999999776544333 2344566666554 58888886 5887 77777665
Q ss_pred ce---ecceeEeeCCe-EEEEee-------------CCEEEEEECCCCcEEEEecCCCCCC
Q 031361 103 FM---RRMPHVWDDGA-LLLGHE-------------KTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 103 ~V---~ssP~v~~dg~-VyvGs~-------------d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
.. ...=....+|. ++.++. +..++-|| .||+++|.++..+++.
T Consensus 187 ~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld 246 (477)
T PF05935_consen 187 GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLD 246 (477)
T ss_dssp TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-
T ss_pred cccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCC
Confidence 22 22222233444 344552 45799999 9999999999888873
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.05 Score=50.61 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=70.6
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCce--------eEEEecC-CCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeec
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGES--------RWSFSMG-KPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~--------~W~f~t~-~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
|..+..+..|+.||+|+..|..++.. ..++... ..|. +.... ++. +++-++.|+.+...|..+|+. .
T Consensus 84 P~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~ 161 (568)
T PTZ00420 84 PCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-A 161 (568)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEEECCCCcE-E
Confidence 33567899999999999999887532 2233221 1222 11222 233 334555677999999999887 4
Q ss_pred cccCcccceecceeEeeCCeEE-EEeeCCEEEEEECCCCcEEEEecC
Q 031361 96 PSIDVGEFMRRMPHVWDDGALL-LGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 96 w~~~~~~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
..+.....|.+.= ...||.++ .++.|+.++..|+++|+.+.++..
T Consensus 162 ~~i~~~~~V~Sls-wspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 162 FQINMPKKLSSLK-WNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEecCCcEEEEE-ECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 4444343343322 22235554 577899999999999999887754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0061 Score=51.59 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=78.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-----------------------------------CC-
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-----------------------------------DP- 71 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-----------------------------------d~- 71 (161)
..+...-.+.-|-.++-.|-.||++.-+|..-..-..+.+++ |+
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence 344455566778899999999999999887643322222221 11
Q ss_pred -------CeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 72 -------DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 72 -------~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.-+|.++-||++..+|.+.|.+ -..-++++|.+.-+.-+.+-+.+|+-|+++..||..|||++..|+.
T Consensus 149 ~Si~v~~heIvaGS~DGtvRtydiR~G~l--~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGSVDGTVRTYDIRKGTL--SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred eEEEecccEEEeeccCCcEEEEEeeccee--ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 2366666788999999998877 2334556676665554435578999999999999999999987765
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.046 Score=49.41 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=67.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe---ecceEee-CCCeEEecC--------------CCCEEEEEECCC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI---YSSFTRN-DPDFYVDVG--------------EDWKLYFHRKGI 90 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i---~ssp~~~-d~~~~V~~~--------------ddg~Lyald~~t 90 (161)
.+|.+++++. ..++.+|. .|+++|.++..+.- +.....- +++.++-.. +| .++-+| .+
T Consensus 157 ~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~t 232 (477)
T PF05935_consen 157 PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEVD-PT 232 (477)
T ss_dssp TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE--TT
T ss_pred CCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEEC-CC
Confidence 5677777776 99999999 59999999987743 3333222 334333221 45 688899 99
Q ss_pred CCeeccccCcccceeccee---------------------------E-eeCCeEEEEeeCC-EEEEEECCCCcEEEEecC
Q 031361 91 GKMKKPSIDVGEFMRRMPH---------------------------V-WDDGALLLGHEKT-SVFFVDAKSGGMICSHES 141 (161)
Q Consensus 91 G~~~~w~~~~~~~V~ssP~---------------------------v-~~dg~VyvGs~d~-~lyalDa~TG~~~W~~~~ 141 (161)
|++ .|.+.+.+.+..... . ..|+.+++.++.. .++.||.+||+++|....
T Consensus 233 G~v-v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 233 GEV-VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp S-E-EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCE-EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 999 888888876521110 1 1146688888755 999999999999999998
Q ss_pred CCCCCCc
Q 031361 142 DNSASTL 148 (161)
Q Consensus 142 ~~~~~~~ 148 (161)
....+.-
T Consensus 312 ~~~w~~~ 318 (477)
T PF05935_consen 312 PGGWNGT 318 (477)
T ss_dssp STT--TT
T ss_pred CCCCCcc
Confidence 7655443
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.077 Score=49.38 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=71.9
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeE
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV 110 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v 110 (161)
..+..++.||+|.-.|.++|+.++++.....|.+-.--.++..++.+..|+.+..+|+++|+. .-.+..++....+-.+
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-i~tl~gH~g~~~s~~v 217 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNTKNI 217 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-EEEEecccCCceeEEE
Confidence 344578999999999999999999987665555422223667776666777999999999987 4444444321111111
Q ss_pred ------eeCCeEEEEeeCC----EEEEEECCC-CcEEEEecCCC
Q 031361 111 ------WDDGALLLGHEKT----SVFFVDAKS-GGMICSHESDN 143 (161)
Q Consensus 111 ------~~dg~VyvGs~d~----~lyalDa~T-G~~~W~~~~~~ 143 (161)
.+++.+..++.+. .+..-|.++ ++++-.+..+.
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 2334455555443 688888774 66666554433
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.068 Score=46.98 Aligned_cols=113 Identities=14% Similarity=0.025 Sum_probs=82.9
Q ss_pred CCCEEEEEecC-----CeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecC---------CCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLN-----GTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVG---------EDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~D-----G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~---------ddg~Lyald~~tG~~ 93 (161)
....|||-+.. |++|-+|..+++.+=+++++..-+.- ...|+ .+||-+. ++..+-.+|+.|+++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 55678988886 89999999999999999987644432 23344 5788777 666899999999999
Q ss_pred eccccCcccc----eeccee---EeeCC-eEEEEe-e-CCEEEEEECCCCcEEEEecCCC
Q 031361 94 KKPSIDVGEF----MRRMPH---VWDDG-ALLLGH-E-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 94 ~~w~~~~~~~----V~ssP~---v~~dg-~VyvGs-~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.....+++- +...|. ++.|| .+||.. . ++.+-.||..+++.+-+....+
T Consensus 90 -~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 90 -IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred -EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 655555322 222332 23344 588876 3 6899999999999999998754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.096 Score=49.67 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=73.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe--eCCCeEEecCCCCEEEEEECCCCCeeccccCcc-ccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR--NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~--~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ 105 (161)
.+..++.|+.||+|+..|..+|+.+=+++....+... .. .++..++-+..|+.++.+|..+++.....+..+ ..|.
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v-~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~ 665 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV-QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE-EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE
Confidence 4568889999999999999999988777765544432 22 235566666678899999988776412122222 2343
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCC------cEEEEec
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSG------GMICSHE 140 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG------~~~W~~~ 140 (161)
.--+. +...++.|+.|+++...|..++ +.+.++.
T Consensus 666 ~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 666 YVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred EEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 33332 3366788999999999998753 4555554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.038 Score=47.46 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=81.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee---------------------------------C-----
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---------------------------------D----- 70 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~---------------------------------d----- 70 (161)
....++.|+.|-++..-|-+||+++-+++++.++...--.. +
T Consensus 63 ~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 63 DSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred CcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 45678899999999999999999998888876644221000 0
Q ss_pred ----------------CCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecceeEeeCCeEE-EEeeCCEEEEEECCC
Q 031361 71 ----------------PDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMPHVWDDGALL-LGHEKTSVFFVDAKS 132 (161)
Q Consensus 71 ----------------~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~T 132 (161)
++.+|.+.++|++-.+|+++|++..-.-+... .|..--. +.|.+.| .||+|++-..+|..|
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~-s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF-SRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc-cCCcceEEecccCccceeeeccc
Confidence 13467777888999999999977222222111 1111111 2235554 699999999999999
Q ss_pred CcEEEEecCCCCCCC
Q 031361 133 GGMICSHESDNSAST 147 (161)
Q Consensus 133 G~~~W~~~~~~~~~~ 147 (161)
=+.+.+|.++...+.
T Consensus 222 l~v~Kty~te~PvN~ 236 (327)
T KOG0643|consen 222 LEVLKTYTTERPVNT 236 (327)
T ss_pred eeeEEEeeecccccc
Confidence 999999998876543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.12 Score=47.16 Aligned_cols=112 Identities=10% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-eecceEe-eCCCeEEec----CCCCEEEEEECCCCCeeccccCccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSSFTR-NDPDFYVDV----GEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ssp~~-~d~~~~V~~----~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
.+..++.++.||+|+..|.++|+++.++..... ....... .+++.++-+ ..|+.+...|.++.....-......
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 567888999999999999999999988865332 2211221 233444432 2466888888876543111112121
Q ss_pred -ceecceeEeeCC-eEEEEee-CCEEEEEECCCCcEEEEec
Q 031361 103 -FMRRMPHVWDDG-ALLLGHE-KTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 103 -~V~ssP~v~~dg-~VyvGs~-d~~lyalDa~TG~~~W~~~ 140 (161)
.....|+...|+ .+|+|++ |++++..|..+|++.-...
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 233456665444 5677775 9999999999999876543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.094 Score=46.75 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=65.4
Q ss_pred CCC-EEEEEecCCe--EEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC---CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGD-LALVATLNGT--VHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~-~V~vgs~DG~--lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+. ++|..+.+|. ||.+|..+|++. ++.....+...|... |+..+++..+ ..++|.+|..+|+.++..+...
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 344 4556777885 999999888653 333333344555543 5554444332 2479999999998866554322
Q ss_pred cceecceeEeeCC-eEEEEeeC-C--EEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEK-T--SVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d-~--~lyalDa~TG~~~W 137 (161)
-..+|..+.|| .+++.+.+ + ++|.+|.++|++.-
T Consensus 351 --~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 351 --QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred --CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 23457766444 45555443 3 78999999998643
|
|
| >PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.013 Score=50.85 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=43.5
Q ss_pred CCeEEEEeCCC-CceeEEEecCC--CeecceEeeC--CCe---EEecCC-CCEEEEEECCCCCeeccc----cCccccee
Q 031361 39 NGTVHLVDTKR-GESRWSFSMGK--PIYSSFTRND--PDF---YVDVGE-DWKLYFHRKGIGKMKKPS----IDVGEFMR 105 (161)
Q Consensus 39 DG~lyAvd~~t-G~~~W~f~t~~--~i~ssp~~~d--~~~---~V~~~d-dg~Lyald~~tG~~~~w~----~~~~~~V~ 105 (161)
...||.+|+++ |+++|++.+.. ...+.|...| .|. ++|.+| +|+||.+|..+.....|. +...++|.
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~~~~~~~~~~~~~~g~~PIt 259 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSSANPSSWSVRTIFSGTQPIT 259 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--TTSTT-GG-EESGGG-----
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCCCCcccceeeecccCcCCeE
Confidence 46899999999 99999998644 3445666543 332 445554 689999998654333453 33347899
Q ss_pred cceeEeeC---CeEEEEee
Q 031361 106 RMPHVWDD---GALLLGHE 121 (161)
Q Consensus 106 ssP~v~~d---g~VyvGs~ 121 (161)
+.|.+..+ ..||||+-
T Consensus 260 ~aP~v~~~~~~~~V~fGTG 278 (335)
T PF05567_consen 260 AAPAVVRDPDGRWVFFGTG 278 (335)
T ss_dssp S--EEEE-TTSSEEEEE--
T ss_pred ecceEEecCCCCEEEEEeC
Confidence 99998532 46888864
|
PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A. |
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=56.90 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=63.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
..+|.+|.|+.++..|.+|.+||+..|+|.+..||.....+. .+-| .+...|..+-.. +|..+-.+.+...
T Consensus 105 ssdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~~~~v~~g-rt~y-------tv~m~d~~~~~~-~wn~t~~dy~a~~ 175 (903)
T KOG1027|consen 105 SSDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPIKQLVYLG-RTNY-------TVTMYDKNVRGK-TWNTTFGDYSAQY 175 (903)
T ss_pred CCCCeEEecccccceEEecCCccceeEEEecCCcchhheecc-ccee-------EEecccCcccCc-eeeccccchhccC
Confidence 378999999999999999999999999999999887654332 1111 111112222233 5555555444443
Q ss_pred eeEee-CCeEEEEe-eCCEEEEEECCCCcEEEEecC
Q 031361 108 PHVWD-DGALLLGH-EKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 108 P~v~~-dg~VyvGs-~d~~lyalDa~TG~~~W~~~~ 141 (161)
|--.. .....+++ .+|-+-.+|.++|+.+|.-+-
T Consensus 176 ~~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~ 211 (903)
T KOG1027|consen 176 PSGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDL 211 (903)
T ss_pred CCccCCceeEEEeecCCccEEeccCcccceeecccc
Confidence 33111 12222222 366666688888888876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.11 Score=45.43 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=66.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
+..+..+|+.+.||.|.-+|..+++.+-+.+++..-.+-....|+. +|+.+...+.+-.+|++|.++ .-...++..-.
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~ 123 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPV 123 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-T
T ss_pred cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccc
Confidence 3456789999999999999999999999999988655533334554 566776777999999999888 33344332211
Q ss_pred cceeEeeCCe--EEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 106 RMPHVWDDGA--LLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 106 ssP~v~~dg~--VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
..|- .+ -++.+.....|.++.+....+|..+..+
T Consensus 124 ~~~~----~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 124 DGPE----SRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp TTS-------EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cccC----CCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 0000 11 1234445555555555544556555433
|
... |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0034 Score=56.90 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=95.1
Q ss_pred CCCCCEEEEEecCCeEEEEeCCC-CceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 27 PESGDLALVATLNGTVHLVDTKR-GESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~t-G~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
|...-+++-++.||.||..|..+ |+.+=+|.--. ||...--..++.-|.-++-|..+--.|.+||+. .-+|..+..+
T Consensus 224 p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~-~~~f~~~~~~ 302 (503)
T KOG0282|consen 224 PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV-LSRFHLDKVP 302 (503)
T ss_pred cceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE-EEEEecCCCc
Confidence 34677899999999999999887 88888886543 444433334566777777777888889999999 8888888665
Q ss_pred ecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCceeee
Q 031361 105 RRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMKKSF 158 (161)
Q Consensus 105 ~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~ 158 (161)
.+-=.--+| +.+++|..|+.|...|.++|+++..|+..--+.+--+=.|-.+-|
T Consensus 303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 543333333 667789999999999999999998887655554444434433333
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.35 Score=41.48 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCEEEEEecC---CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-C--CCCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-G--EDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~--ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+.+ ..||.+|..+|+..--....+... ++... |+..+++. . +...+|.+|..+|+.+.+.. .
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--~ 276 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--G 276 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC--C
Confidence 34455555443 479999999997654333333222 34433 55544332 2 23469999999887744432 2
Q ss_pred cceecceeEeeCC-eEEEEeeCC---EEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEKT---SVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d~---~lyalDa~TG~~~W 137 (161)
.....+|....|+ .+++.+..+ .+|.+|..+|+...
T Consensus 277 ~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 277 PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR 316 (417)
T ss_pred CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 2345567765455 466665432 79999999888653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.19 Score=43.52 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=48.4
Q ss_pred CCCEEEE--EecCCeEEEEeCCCCceeEEEecCCC---e-ecceEeeCCCeEEecCCC-----------CEEEEEECCCC
Q 031361 29 SGDLALV--ATLNGTVHLVDTKRGESRWSFSMGKP---I-YSSFTRNDPDFYVDVGED-----------WKLYFHRKGIG 91 (161)
Q Consensus 29 ~~~~V~v--gs~DG~lyAvd~~tG~~~W~f~t~~~---i-~ssp~~~d~~~~V~~~dd-----------g~Lyald~~tG 91 (161)
.++.+|+ |..+..++.+|....+-.|+.-..-| - ..+....++.+||-++.+ ..+|++|+.+.
T Consensus 37 ~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 37 DNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred ECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 5778887 33344578888766556787533222 1 112234477788755432 25888998764
Q ss_pred CeeccccCc--ccceecceeEe-eCCeEE-EEeeC
Q 031361 92 KMKKPSIDV--GEFMRRMPHVW-DDGALL-LGHEK 122 (161)
Q Consensus 92 ~~~~w~~~~--~~~V~ssP~v~-~dg~Vy-vGs~d 122 (161)
+ |.+... ........++. .|+.|| +|..+
T Consensus 117 ~--W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 117 S--WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred E--EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 2 333321 12222222222 347787 56653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.17 Score=44.55 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=66.1
Q ss_pred CCCEE-EEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC-C--CEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLA-LVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE-D--WKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V-~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d-d--g~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+ +..+.+| .||.+|..+|+.. ++.....+..+|... |+..+++..+ + .++|.++..+|+.++..+.-
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g- 335 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG- 335 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-
Confidence 34444 4556777 5999999988753 443333344455544 5555555443 2 36999999888876655432
Q ss_pred cceecceeEeeCC-eEEEEeeCC---EEEEEECCCCcEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEKT---SVFFVDAKSGGMI 136 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d~---~lyalDa~TG~~~ 136 (161)
....+|..+.|| .+++.+.++ .++.+|..+|+..
T Consensus 336 -~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 336 -NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred -CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 234467776554 455554333 6999999999876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.22 Score=43.86 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=66.7
Q ss_pred CCCCEEEEEecCC------eEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecC---CCCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNG------TVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVG---EDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG------~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~---ddg~Lyald~~tG~~~~w~ 97 (161)
+..-++|+....| .|+..|...++++.-....+++. +|.. .|+..+++.. ++..+|.+|..+|+.+...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~ 242 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG 242 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee
Confidence 4455666665555 89999997766654333334444 4554 4666544432 3468999999999774432
Q ss_pred cCcccceecceeEeeCCe-E-EEEeeCC--EEEEEECCCCcEEE
Q 031361 98 IDVGEFMRRMPHVWDDGA-L-LLGHEKT--SVFFVDAKSGGMIC 137 (161)
Q Consensus 98 ~~~~~~V~ssP~v~~dg~-V-yvGs~d~--~lyalDa~TG~~~W 137 (161)
. .. ....+|..+.||. + |..++++ .+|.+|.++|+...
T Consensus 243 ~-~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 243 N-FP-GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred c-CC-CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence 1 22 2445788776664 4 4455544 59999999988654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.2 Score=43.64 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCEE-EEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC---CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLA-LVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V-~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+ |..+.+| .||.+|..+|+.. ++.....+..+|... |+..+++..+ ..++|.++..+|+.++..+..
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~- 330 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG- 330 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-
Confidence 34444 4556666 6999999988754 343333345556554 5554444332 347999999999876665432
Q ss_pred cceecceeEeeCC-eEEEEee-CC--EEEEEECCCCcEEEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHE-KT--SVFFVDAKSGGMICS 138 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~-d~--~lyalDa~TG~~~W~ 138 (161)
.....|..+.|| .+++.+. ++ .+|.+|.++|+...-
T Consensus 331 -~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 331 -NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred -CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence 234466665443 4555443 32 699999999987543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.34 Score=42.63 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=65.0
Q ss_pred CCCEEEEEec---CCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-CC--CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATL---NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-GE--DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~---DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~d--dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+. +..||..|..+|+.. ++.........+... |++.++.. .. ..++|.+|..+|+.++... .
T Consensus 212 DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--~ 288 (435)
T PRK05137 212 NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD--S 288 (435)
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC--C
Confidence 4444444432 468999999998764 332222222334443 56544332 22 2469999999998755432 3
Q ss_pred cceecceeEeeCCe-EEEEee-C--CEEEEEECCCCcEEEEe
Q 031361 102 EFMRRMPHVWDDGA-LLLGHE-K--TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~-d--~~lyalDa~TG~~~W~~ 139 (161)
..+..+|..+.||. +++.+. + ..+|.+|+.+|+...-.
T Consensus 289 ~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 289 PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence 34667788776654 666653 2 37999999888765443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.14 Score=41.16 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=56.0
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc--cc---c
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV--GE---F 103 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~--~~---~ 103 (161)
++.+|+.+ ..|.||.+|..+++.. .+....|.-......++.+||.... .++.+|..+|+.+.. .+. ++ .
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~-~~~~~~~~~~~ 86 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVL-ADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEE-EEEETTCSCTE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEE-eeccCCCcccC
Confidence 45566655 4677888888766553 2333332222111124556665543 344448888876333 222 11 1
Q ss_pred eecceeEeeCCeEEEEeeC---------CEEEEEECCCCcEEEEec
Q 031361 104 MRRMPHVWDDGALLLGHEK---------TSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d---------~~lyalDa~TG~~~W~~~ 140 (161)
--.--++..+|.+|++... +.+|.+++. |+......
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 1112234556889998754 579999988 77555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.18 Score=44.69 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=63.3
Q ss_pred CCCEEE-EEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCC---CEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLAL-VATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGED---WKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~-vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~dd---g~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..++ +.+.+| .||.+|.++|+.. ++..+......|... |+..+++..+. .++|.+|..+|+.++.....
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~- 330 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG- 330 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-
Confidence 444444 446666 5999999988764 232222233445543 56656555543 37999999988775543332
Q ss_pred cceecceeEeeCC-eEEE-EeeC--CEEEEEECCCCcEE
Q 031361 102 EFMRRMPHVWDDG-ALLL-GHEK--TSVFFVDAKSGGMI 136 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~Vyv-Gs~d--~~lyalDa~TG~~~ 136 (161)
....+|..+.|| .+++ +..+ ..+|.+|.++|+..
T Consensus 331 -~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 331 -SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred -CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 234567765555 3444 4333 46999999999865
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.043 Score=46.78 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCCEEEEEecCCeEEEEeC------CCCceeEEEecCCCe--ecceEee-------CCCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLNGTVHLVDT------KRGESRWSFSMGKPI--YSSFTRN-------DPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~------~tG~~~W~f~t~~~i--~ssp~~~-------d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
+++.++.+. ||.+|+..= .-=|+.|..+..-.. ..-|.++ +|.++..+ .|+.+|..|.++|+.
T Consensus 71 ~d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i 148 (325)
T KOG0649|consen 71 HDDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRI 148 (325)
T ss_pred ehhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEE
Confidence 455555554 588888742 233567776542211 1112221 23444444 567999999999999
Q ss_pred eccccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 94 KKPSIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 94 ~~w~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
++- +.-+ ++|.+--.-..++-|+-|++||++..-|.+|+|-+.....-.+.+
T Consensus 149 ~r~-~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 149 QRE-YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN 201 (325)
T ss_pred EEE-EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh
Confidence 444 4433 455543332334679999999999999999999998887655443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.38 Score=41.97 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCCEE-EEEecC--CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-CC--CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLA-LVATLN--GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-GE--DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V-~vgs~D--G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~d--dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+ |+...+ ..||..|..+|+..--....+ ....|... |++.+++. .. ...||.+|..+|+.++. .-.
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l--t~~ 285 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV--TNH 285 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc--ccC
Confidence 44444 444443 368999998887653222222 22334443 55544332 22 24799999999987443 223
Q ss_pred cceecceeEeeCC-eEEEEeeC---CEEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEK---TSVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d---~~lyalDa~TG~~~W 137 (161)
..+..+|....|| .+++.+.. ..+|.+|..+|+...
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 4467788876554 46666643 379999999998654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.24 Score=42.94 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=49.7
Q ss_pred CeEEecCCCCEEEEEECCCCCeeccccCcccceecce---eEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 72 DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP---HVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 72 ~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP---~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
...+-+.+.+.+|.+|+-+|.+ +-.|+....=...| +..-| ..|+.|+.||++++-+.+||+++-+++..
T Consensus 200 K~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 200 KSILLSTNASFIYLLDAFDGTV-KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred CEEEEEeCCCcEEEEEccCCcE-eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 3344444667899999999997 66666553323223 23233 45677889999999999999999988874
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.67 Score=41.28 Aligned_cols=107 Identities=8% Similarity=0.030 Sum_probs=66.8
Q ss_pred CCC-EEEEEecC---CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec---CCCCEEEEEECCCCCeeccccCc
Q 031361 29 SGD-LALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV---GEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~-~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~---~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.++ .+++.+.+ ..||.+|..+|+..-=....+ ....|... |+...+.. ..+..+|.+|..+|+.+++..
T Consensus 198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~-- 274 (419)
T PRK04043 198 KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN-- 274 (419)
T ss_pred CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc--
Confidence 344 46665444 579999999998764333222 22334433 55433321 234689999999887755432
Q ss_pred ccceecceeEeeCC-eEEEEeeC---CEEEEEECCCCcEEEE
Q 031361 101 GEFMRRMPHVWDDG-ALLLGHEK---TSVFFVDAKSGGMICS 138 (161)
Q Consensus 101 ~~~V~ssP~v~~dg-~VyvGs~d---~~lyalDa~TG~~~W~ 138 (161)
...+...|..+.|| .+++.|.. ..+|.+|+.+|+...-
T Consensus 275 ~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 275 YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 23356778877666 47776633 2899999999998443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.12 Score=49.99 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=84.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC----eecceEeeCCCeE-EecCCCCEEEEEECCCCCeeccccCcc-c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRNDPDFY-VDVGEDWKLYFHRKGIGKMKKPSIDVG-E 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~----i~ssp~~~d~~~~-V~~~ddg~Lyald~~tG~~~~w~~~~~-~ 102 (161)
+=+.+.+|+.+|.+...|-++|+++-+|+.-.. |..+|+. |+. ||+ .+|.+..++.+.++. .-.|+.. +
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---DVVaiG~-~~G~ViifNlK~dki-l~sFk~d~g 245 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---DVVAIGL-ENGTVIIFNLKFDKI-LMSFKQDWG 245 (910)
T ss_pred heeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---eEEEEec-cCceEEEEEcccCcE-EEEEEcccc
Confidence 567899999999999999999999999986442 3345544 555 455 566999999999999 7778775 5
Q ss_pred ceecceeEee-CCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWD-DGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~-dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.|.+--+-.| ...+-.|++.|.|..-|.+.-+++|......
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah 287 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH 287 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc
Confidence 6665555443 1235678888999999999999999987433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.43 Score=38.35 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=58.7
Q ss_pred CCCEEEEEecC---------CeEEEEeCCCCceeEEEecCCCeecceEe-eCC-CeEEecCCCCEEEEEECC--CCCee-
Q 031361 29 SGDLALVATLN---------GTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDP-DFYVDVGEDWKLYFHRKG--IGKMK- 94 (161)
Q Consensus 29 ~~~~V~vgs~D---------G~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~-~~~V~~~ddg~Lyald~~--tG~~~- 94 (161)
.+|.+|+++.. |.||.++.. |+...-...- ........ .|+ .+|+--...+.+|.++.. ++++.
T Consensus 95 ~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 95 PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred CCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-ccccceEECCcchheeecccccceeEEEeccccccceee
Confidence 35667777654 568888887 6654433221 11111112 144 356554455578887764 22110
Q ss_pred -ccccCcccceecce---eEeeCCeEEEEee-CCEEEEEECCCCcEEEEecCC
Q 031361 95 -KPSIDVGEFMRRMP---HVWDDGALLLGHE-KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 95 -~w~~~~~~~V~ssP---~v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~ 142 (161)
+...+....- ..| ++..+|.+|++.. .+.++.+|+. |+++-+....
T Consensus 173 ~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 173 RRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred eeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 1011111110 112 2455688999874 7899999988 9999888876
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.7 Score=41.21 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCEE-EEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-CCCC--EEEEEECCCCCeeccccCcc
Q 031361 29 SGDLA-LVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-GEDW--KLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V-~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~ddg--~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+ |+...+| .||.+|..+|+..--.... ....+|... |++.+++. ..+| .||.+|..+|+.++... .
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~--~ 304 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR--H 304 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc--C
Confidence 34444 4444444 6999999998864222111 222345443 55544432 2233 59999999998744432 3
Q ss_pred cceecceeEeeCCe-EEEEee---CCEEEEEECCCCcEEEE
Q 031361 102 EFMRRMPHVWDDGA-LLLGHE---KTSVFFVDAKSGGMICS 138 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~---d~~lyalDa~TG~~~W~ 138 (161)
..+...|..+.|+. +++.+. +..+|.+|.++|+...-
T Consensus 305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 34667788765553 555553 24799999999987543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.57 Score=41.44 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=60.0
Q ss_pred CCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec--CC-CCEEEEEECCCCCeeccccCcccceecceeEeeCC
Q 031361 39 NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV--GE-DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDG 114 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~--~d-dg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg 114 (161)
+..||..|..+|+..--....+ ....|... |+...+.. .+ ..+||.+|.++|+.++.... .....+|....||
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~-~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~--~~~~~~~~wSPDG 298 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG--RSNNTEPTWFPDS 298 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCC-CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC--CCCcCceEECCCC
Confidence 3479999998887654322222 22344443 55543332 22 23699999999988544322 2355678877666
Q ss_pred e-EEEEeeCC---EEEEEECCCCcEEEE
Q 031361 115 A-LLLGHEKT---SVFFVDAKSGGMICS 138 (161)
Q Consensus 115 ~-VyvGs~d~---~lyalDa~TG~~~W~ 138 (161)
. +++.+.++ .+|.+|.++|+...-
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 5 65666543 899999999876543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.35 Score=42.60 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=64.4
Q ss_pred CCCEEE-EEecCCe--EEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC---CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLAL-VATLNGT--VHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~-vgs~DG~--lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..++ ..+.||. ||.+|..+|+. -++.....+..+|... |+..+++..+ .-++|.++..+|+.++..+.-
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g- 327 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG- 327 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-
Confidence 344444 4566774 88888876653 3442233344455543 5555544433 237999998888765554432
Q ss_pred cceecceeEeeCC-eEEEEeeCC---EEEEEECCCCcEEEEe
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEKT---SVFFVDAKSGGMICSH 139 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d~---~lyalDa~TG~~~W~~ 139 (161)
.-..+|..+.|| .+++.+.++ .+|.+|..+|+...-.
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 223467776555 355555443 7999999999877543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.36 Score=43.16 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=78.1
Q ss_pred CCCEEEEEecCCeEEEEeC-CCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccc-ee
Q 031361 29 SGDLALVATLNGTVHLVDT-KRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF-MR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~-~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~-V~ 105 (161)
.+..+.-++.|++|+.-|. ..|+..=+++.-.....+..+. ++..++-+.+|+.++..|.++|+. .-.++.+.- |.
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceE
Confidence 4558889999999999999 6678888887443333333443 456777777888999999999988 666666643 33
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
+.=+-.++..+..+|+|+.+..-|..+|...
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 3322233344667999999999999999953
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.22 Score=43.80 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=70.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEE----EecCCCe--------ecceEee--CCCeEEecC-------C--CCEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWS----FSMGKPI--------YSSFTRN--DPDFYVDVG-------E--DWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~----f~t~~~i--------~ssp~~~--d~~~~V~~~-------d--dg~Lya 85 (161)
.++..|+-|-+|.||.+|....++.|. .-++... +...+.. .+.+||--. . +..++.
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 567899999999999999987776643 2221110 0000111 234555211 1 245899
Q ss_pred EECCCCCeeccccCcccceecceeEeeC-CeEEEEe-eCCEEEEEECCCCcEEEEecCCCCCCC
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDD-GALLLGH-EKTSVFFVDAKSGGMICSHESDNSAST 147 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~d-g~VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~~~ 147 (161)
+|.+|++. .-++++++.+.+--+..++ ..+|.-+ .++.|+..|+.|||++.+.+.-+..+.
T Consensus 274 ~D~~t~kr-v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~ 336 (342)
T PF06433_consen 274 YDLKTHKR-VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPT 336 (342)
T ss_dssp EETTTTEE-EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--
T ss_pred EECCCCeE-EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCce
Confidence 99999988 6677777766644443333 3455444 578999999999999999886665554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.55 Score=40.18 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=63.0
Q ss_pred cCCeEEEEeCCCCceeEEEecCCCee---cc----eE---------------------eeCCCeEEecCCCCEEEEEECC
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGKPIY---SS----FT---------------------RNDPDFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~~i~---ss----p~---------------------~~d~~~~V~~~ddg~Lyald~~ 89 (161)
.|+.++-+|..||+++|+.+.-.-+. .. +. ..+++++|-+..-..+|.+|.+
T Consensus 94 ~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~ 173 (299)
T PF14269_consen 94 LDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPS 173 (299)
T ss_pred ecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECC
Confidence 37888999999999999986532111 00 00 0033666766666789999999
Q ss_pred CCCeeccccCccc----------ce-ecceeEe----eCCeEE-E----------EeeCCEEEEEECCCCcEEEEecCC
Q 031361 90 IGKMKKPSIDVGE----------FM-RRMPHVW----DDGALL-L----------GHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 90 tG~~~~w~~~~~~----------~V-~ssP~v~----~dg~Vy-v----------Gs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
||++ .|.+.-+. +. +--|-.. +++.+- | ....+.++.||..+.+..+..+..
T Consensus 174 tG~I-~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~ 251 (299)
T PF14269_consen 174 TGKI-IWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS 251 (299)
T ss_pred CCcE-EEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee
Confidence 9999 77764330 11 1111111 222221 1 125678999999977666655443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.38 Score=44.59 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=83.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC--eecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP--IYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~--i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.-..+..|+-.|.|-+++...|+.-|++.|++- .+....-+++-+.+|+. .|.++-.++.++++. .-.+....+-.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~ 147 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV 147 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence 456677899999999999999999999998761 22222222334555543 467777788888887 66677777777
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+|=++..|+.+ .++-.+.+-.+|.+|+|++-.|.....
T Consensus 148 ~sl~is~D~~~-l~~as~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 148 SSLCISPDGKI-LLTASRQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred ceEEEcCCCCE-EEeccceEEEEEccCceEEEEecCCCc
Confidence 88888777643 344456899999999999999976543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.92 Score=39.97 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=63.1
Q ss_pred CCCEEEEEecC---CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-CCCC--EEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-GEDW--KLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~ddg--~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+.+ ..||..|..+|+..--....+ ....+... |+..++.+ ..+| +||.+|..+|+.++.. -+
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt--~~ 290 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT--SG 290 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec--cC
Confidence 44444444433 379999999997543222222 22334443 55544443 2333 5899999888774443 33
Q ss_pred cceecceeEeeCCe-EEEEe-eCC--EEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDGA-LLLGH-EKT--SVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs-~d~--~lyalDa~TG~~~W 137 (161)
.....+|....||. +++.+ .++ .+|.+|..+++...
T Consensus 291 ~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 291 AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 44667888877665 56555 333 88999988876644
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.31 Score=42.21 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
+..+..++++|..+.+|-+|+-+|.++=+|.... .+..+... .|+..++.+.+||++++.+.++|+. .-.+..
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-v~~~~~ 272 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK-VAVLRG 272 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE-eeEecC
Confidence 3478889999999999999999999999987532 22223333 4778888888999999999999988 444443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=1 Score=39.66 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCCEEEEEe-cCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecC-CC--CEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVAT-LNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVG-ED--WKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs-~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~-dd--g~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+ .+| .||.+|..+|+..--. ..+....++... |++.+++.. ++ .++|.+|..+|+.+.. +-+
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L--t~~ 378 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL--TPG 378 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC--CCC
Confidence 445555554 455 4999999888764322 122222345443 555544432 22 3699999999988433 222
Q ss_pred cceecceeEeeCCe-EEEEee---CCEEEEEECCCCcEEEEecC
Q 031361 102 EFMRRMPHVWDDGA-LLLGHE---KTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~---d~~lyalDa~TG~~~W~~~~ 141 (161)
....+|..+.||. +++.+. .+.||.+|. +|+...+...
T Consensus 379 -~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~ 420 (433)
T PRK04922 379 -SLDESPSFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRLVS 420 (433)
T ss_pred -CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEccc
Confidence 2456788876665 566654 357999997 5666666654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.19 Score=46.40 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=78.3
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeE
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV 110 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v 110 (161)
+.++.|+......-+-.--|+++|.+.+-. +.+.|+-|+.|+.+...+ .-++ .|.-.+.++++++-+.
T Consensus 349 N~iL~Gt~~~~f~~~v~gh~delwgla~hp---------s~~q~~T~gqdk~v~lW~--~~k~-~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 349 NFILQGTLENGFTLTVQGHGDELWGLATHP---------SKNQLLTCGQDKHVRLWN--DHKL-EWTKIIEDPAECADFH 416 (626)
T ss_pred ceEEEeeecCCceEEEEecccceeeEEcCC---------ChhheeeccCcceEEEcc--CCce-eEEEEecCceeEeecc
Confidence 344455555555566666678888886522 346788999998888777 4456 8988899999988886
Q ss_pred eeCCeEEEEeeCCEEEEEECCCCcEEE-----------EecCCCCCCCcCCCCC
Q 031361 111 WDDGALLLGHEKTSVFFVDAKSGGMIC-----------SHESDNSASTLGSGLP 153 (161)
Q Consensus 111 ~~dg~VyvGs~d~~lyalDa~TG~~~W-----------~~~~~~~~~~~~~~~~ 153 (161)
-. |.|.+|+-.|.++.+|.+|-.++- +|..++.+-.+|++-|
T Consensus 417 ps-g~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 417 PS-GVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred Cc-ceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 65 688899999999999999955543 3445555555555544
|
|
| >KOG2103 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.13 Score=49.59 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=71.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc--eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS--FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss--p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
....+||.|..|-|-++|.+||+..|+--.+.+-.+. +.. .+| +.|+..+++.+..+|.+ -|+.+..+....
T Consensus 46 ~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~----~~i-S~dg~~lr~wn~~~g~l-~~~i~l~~g~~~ 119 (910)
T KOG2103|consen 46 KSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLT----NTI-SVDGRYLRSWNTNNGIL-DWEIELADGFKG 119 (910)
T ss_pred CCceEEEEeccchhheecccCCcEEEEEeccCCCcccCccee----EEE-ccCCcEEEeecCCCcee-eeecccccccce
Confidence 5789999999999999999999999998665532221 111 232 23566899999999999 998888766444
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.-+....+..+++. ...+.|++.|+.....
T Consensus 120 ~~~~v~~~i~v~~g-------~~~~~g~l~w~~~~~~ 149 (910)
T KOG2103|consen 120 LLLEVNKGIAVLNG-------HTRKFGELKWVESFSI 149 (910)
T ss_pred eEEEEccceEEEcc-------eeccccceeehhhccc
Confidence 44433334344433 6778899999866543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.25 Score=47.47 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=70.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeC--CCe-EEecCCCCEEEEEECCCCCeeccccCccc-ce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRND--PDF-YVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d--~~~-~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V 104 (161)
.+..++-.|.||+|+|-|.+.++=--+|....|+.-+-.+.| +++ ..+..|-=.+|..+.+||++ .=-.+-+| +|
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPV 481 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPV 481 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcc
Confidence 678899999999999999999999999999999986666666 444 44555555677778888887 44444443 23
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEE
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalD 129 (161)
.+--.-.+...++-||||.++..=|
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEE
Confidence 3211112224577899999887655
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.4 Score=37.82 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=63.8
Q ss_pred CCCEEEEEec-CC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCC---EEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATL-NG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDW---KLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~-DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg---~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+. +| .||.+|..+|+.. ++...+.-...+... |++.+++...++ ++|.+|..+|..+....
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~--- 363 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD--- 363 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC---
Confidence 4555655554 33 6999999888753 333233222334443 556665554443 79999998886643332
Q ss_pred cceecceeEeeCC-eEEEEeeCC--EEEEEECCCCcEEEEecC
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEKT--SVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d~--~lyalDa~TG~~~W~~~~ 141 (161)
.....+|..+.|+ .+++.+.++ ..+.++..+|+..+....
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 1234567776554 466666543 334455578888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.9 Score=33.87 Aligned_cols=90 Identities=11% Similarity=0.031 Sum_probs=66.3
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceeccee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
.+.+++||.|..|+.++. .+.++++...+.+.+-... .+.-|.|+.+.|.+=.++. ..+.|+.+.+..+.+.-.
T Consensus 15 ~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~-~~~~F~Y~l~NGTVGvY~~---~~RlWRiKSK~~~~~~~~ 88 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSL-GGGRFAYALANGTVGVYDR---SQRLWRIKSKNQVTSMAF 88 (111)
T ss_pred cceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEc-CCCEEEEEecCCEEEEEeC---cceeeeeccCCCeEEEEE
Confidence 378999999999999997 4999999887766653333 3356788888888776653 455999999987766666
Q ss_pred EeeCC----eEEEEeeCCEE
Q 031361 110 VWDDG----ALLLGHEKTSV 125 (161)
Q Consensus 110 v~~dg----~VyvGs~d~~l 125 (161)
..-++ -+++|-.+|.+
T Consensus 89 ~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 89 YDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EcCCCCCceEEEEEecCCeE
Confidence 54332 47788877765
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.7 Score=38.28 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=63.6
Q ss_pred CCCEEEEEec-C--CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEe-cCCC--CEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATL-N--GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVD-VGED--WKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~-D--G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~-~~dd--g~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+. + ..||..|..+|+..= +.........|... |+..++. ...+ .++|.+|..+|..+++.. .
T Consensus 206 DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~--~ 282 (427)
T PRK02889 206 DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ--S 282 (427)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC--C
Confidence 4555555543 3 359999999997652 22111222345443 5544332 2222 369999988887644432 3
Q ss_pred cceecceeEeeCCe-EEEEeeC---CEEEEEECCCCcEEEE
Q 031361 102 EFMRRMPHVWDDGA-LLLGHEK---TSVFFVDAKSGGMICS 138 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~d---~~lyalDa~TG~~~W~ 138 (161)
..+..+|..+.||. +++.|.. ..+|.+|..+|+....
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 34667888876664 5655533 3799999888875443
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=1 Score=40.31 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=79.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+.++..|+.|++++.-|.++|+..=+++.... |.+...-.|+..++....|+.+...|..+|..+ -...+.+....+
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSA 335 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCC
Confidence 458999999999999999999999999987664 443322235556666566889999999999842 001111111111
Q ss_pred ee----EeeCC-eEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 108 PH----VWDDG-ALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 108 P~----v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
|+ ...++ .++.++.|+.+-.-|..+|+.+-.+.....
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 33 22333 467888999999999999998888776544
|
|
| >COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.16 Score=50.15 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC----------Cee--------cceEeeCC-------CeEEecC--CCC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK----------PIY--------SSFTRNDP-------DFYVDVG--EDW 81 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~----------~i~--------ssp~~~d~-------~~~V~~~--ddg 81 (161)
---.||+|--||.|||+|+.+|.++..|-... |-+ ++|.+.|. .+.++.. .+.
T Consensus 581 R~~~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~t~~~y~~h~yyVDg~p~~~da~~ng~wrsvL~g~~G~GG~ 660 (1036)
T COG3419 581 RAPVVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSLTAPGYTAHQYYVDGSPTAADAYDNGQWRSVLVGGLGAGGR 660 (1036)
T ss_pred ccceEEEecCCceeeeccCCccceeeecCcHHHHhhhhhhcCCCcccccceecCCceeehhhcCCcceEEEEeecCCCCc
Confidence 34689999999999999999999999986322 222 22222211 2344433 345
Q ss_pred EEEEEECCCC-----CeeccccCccc-----ceecceeEe--eCCe--EEEEeeCCE------EEEEECCCCcEE
Q 031361 82 KLYFHRKGIG-----KMKKPSIDVGE-----FMRRMPHVW--DDGA--LLLGHEKTS------VFFVDAKSGGMI 136 (161)
Q Consensus 82 ~Lyald~~tG-----~~~~w~~~~~~-----~V~ssP~v~--~dg~--VyvGs~d~~------lyalDa~TG~~~ 136 (161)
-|||||..+- .+ .|.....+ .+.+.|.|. +|+. |++|.-..+ ++.+|..++..-
T Consensus 661 glyALDVTdP~~~~~~~-Lw~~~~~d~~~LG~t~gkP~Iv~l~~gswavl~GNGynS~~n~~al~~~~L~t~~~~ 734 (1036)
T COG3419 661 GLYALDVTDPDFSNSNL-LWENNSNDDPDLGYTMGKPRIVPLHDGSWAVLLGNGYNSPANGAALLVLNLLTLDAT 734 (1036)
T ss_pred eeEEEEccCccccCCcc-hhcccCCCccccccccCCCeEEEcCCCceEEEEccCCCCCCCCcceEEEEeecCCcc
Confidence 6999997543 45 77766553 477888873 3453 777865444 788887777543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.5 Score=39.00 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=82.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc--Cccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI--DVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~--~~~~~V~ 105 (161)
....+-.|..|-.-|.-+..+|+..=...--+ .+....-..|+.+..-+.-+|.+..+...+|.. +|++ ++.+.+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-~~~~~~e~~dieW 153 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-QWKLDQEVEDIEW 153 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-EEEeecccCceEE
Confidence 56677777778777888888887333332111 232222223555555555578999999999999 8877 5555433
Q ss_pred c--ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCcee
Q 031361 106 R--MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMKK 156 (161)
Q Consensus 106 s--sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~ 156 (161)
- =| .. ..+..|+.||++..-.+-++.....|......-+.|--.|=-|
T Consensus 154 l~WHp--~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 154 LKWHP--RA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred EEecc--cc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence 3 33 21 4467899999999999999888888888666666665555433
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.99 Score=38.23 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=44.4
Q ss_pred cCCCCCCCCCCC-CCCCEEEEEe--cCCeEEEEeCCCCceeEEEecCCCe----ecceEeeCCCeEEecCCC--------
Q 031361 16 SSLPPTSPRASP-ESGDLALVAT--LNGTVHLVDTKRGESRWSFSMGKPI----YSSFTRNDPDFYVDVGED-------- 80 (161)
Q Consensus 16 ~~~~~~~~~~s~-~~~~~V~vgs--~DG~lyAvd~~tG~~~W~f~t~~~i----~ssp~~~d~~~~V~~~dd-------- 80 (161)
+++|.+...... +.++.||+.. ..-.++.+|....+..|+-...-|. .....+.++.+||-++.+
T Consensus 2 ~~lp~~~~~~~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~ 81 (346)
T TIGR03547 2 PDLPVGFKNGTGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSP 81 (346)
T ss_pred CCCCccccCceEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcc
Confidence 345544443444 5688888842 2246788887666667987554321 122234477788755421
Q ss_pred ---CEEEEEECCCC
Q 031361 81 ---WKLYFHRKGIG 91 (161)
Q Consensus 81 ---g~Lyald~~tG 91 (161)
..++.+|+.+.
T Consensus 82 ~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 82 QVFDDVYRYDPKKN 95 (346)
T ss_pred eecccEEEEECCCC
Confidence 25888898765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.54 Score=42.40 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=84.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce-
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP- 108 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP- 108 (161)
.-.++-|=.|++|++.|.+++...-+.+.++.|.+--...++.-..-|..|-.+-.+|..+-.+ +-.|++.++-.++-
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE-EEEeecccccccccc
Confidence 4445577789999999999999999999999777654444554444445444777778776666 77777776543322
Q ss_pred ---eEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 109 ---HVW-DDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 109 ---~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+++ ++.-|-.||.||++|.=+..|||+..+......++
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~ 432 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA 432 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence 122 22336679999999999999999999988776663
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.77 Score=44.56 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCCCCCCCCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccC
Q 031361 22 SPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 22 ~~~~s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~ 99 (161)
..+|||+. |.|-+|..||+|+-.|.+.++.+=+|+-+ ++|.+-.-..||.-.+-.+ ..|.+...|.+.-++++--..
T Consensus 207 ~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n 285 (910)
T KOG1539|consen 207 AIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN 285 (910)
T ss_pred EeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec
Confidence 35777765 67888999999999999999999999987 7777655445664333322 235677777766555222222
Q ss_pred cc-cceecceeEeeCCeEEEEeeCC--EEEEEECCCC
Q 031361 100 VG-EFMRRMPHVWDDGALLLGHEKT--SVFFVDAKSG 133 (161)
Q Consensus 100 ~~-~~V~ssP~v~~dg~VyvGs~d~--~lyalDa~TG 133 (161)
++ +.|..+-+..+...+...+.|+ .++..|.-+|
T Consensus 286 ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg 322 (910)
T KOG1539|consen 286 AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG 322 (910)
T ss_pred cccCCcccceecCCCceEeeccCCCceeEEEeeCCCC
Confidence 33 2233333333334333334454 3455564444
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.2 Score=42.96 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=91.4
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
..+..+..|..||+|.--|..+|-=.=+|.-...-+...... .+...+-..-||.+.|+|.+.++- -..|+..++++-
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~Qf 438 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQF 438 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceee
Confidence 466788899999999999999998888886544333323322 445555555577999999998888 677888888887
Q ss_pred ceeEee--CCeEEEEeeCC-EEEEEECCCCcEEEEecCCCCCCCcCCCCCc
Q 031361 107 MPHVWD--DGALLLGHEKT-SVFFVDAKSGGMICSHESDNSASTLGSGLPM 154 (161)
Q Consensus 107 sP~v~~--dg~VyvGs~d~-~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~ 154 (161)
+-+-.| ...|+.|+.|. .+|..+..||+++=.....+.+...-.-.|+
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 766544 35678899887 7899999999999877766655543333333
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.62 Score=42.23 Aligned_cols=112 Identities=15% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe-cCCCeecceEee--CCCeEEecCCCCEEEEEECC---CCCeeccccCcc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKG---IGKMKKPSIDVG- 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~-t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~---tG~~~~w~~~~~- 101 (161)
..+++.-||.|-+|-.-|..+|++.=++. .+++|.+. ... ...+.+.++-|+.+...|-+ .-.. .|++..+
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l-~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-~wk~~g~V 332 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTL-EWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK-EWKFDGEV 332 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEE-EecCCCceEEEeccccceEEeeeccCccccCc-eEEeccce
Confidence 56788899999999999999999999987 45555542 222 22455555556577666654 3333 6777766
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECC-CCcEEEEecCCCC
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAK-SGGMICSHESDNS 144 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~-TG~~~W~~~~~~~ 144 (161)
+.|.=-|.-. ...++|+.||++|-+|++ .|+.+|+....+.
T Consensus 333 Ekv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 333 EKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred EEEEecCCCc--eeEEEecCCceEEeeecCCCCCceeEEEeccC
Confidence 2233344432 447789999999999965 5699999775443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.1 Score=41.04 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCCC-ceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccC-cccc
Q 031361 26 SPESGDLALVATLNGTVHLVDTKRG-ESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSID-VGEF 103 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd~~tG-~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~-~~~~ 103 (161)
+|..+-+|+.|+-||+|..-|.++- .++-++..+.||.+--....+..++-++ |.++-..|..+|....-.+. =...
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~Kt 240 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKT 240 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccce
Confidence 3567779999999999999998887 6777777888887655555667777765 43777778876655222222 2234
Q ss_pred eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 104 MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|.+--+..+.-+++-|+-|+++-+.|..+=|.+..++..+
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~ 280 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG 280 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc
Confidence 5554444544568999999999999988888886665443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.6 Score=37.76 Aligned_cols=114 Identities=22% Similarity=0.179 Sum_probs=74.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-----------CC-------------------------
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-----------DP------------------------- 71 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-----------d~------------------------- 71 (161)
..+...+-+|-||+++--|..+|+..=+|.--..-+-+.++. |.
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 477889999999999999999999999986433211111111 11
Q ss_pred ----------CeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEE-EEeeCCEEEEEECCCCcEEEEec
Q 031361 72 ----------DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALL-LGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 72 ----------~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~~ 140 (161)
..+|-++.|..+-..|.++=++ +-.+-.+.-...+-.++-||.+. -|.+|+.++..|...||-+..++
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 1233334444555555554444 44444455556666666677765 48899999999999988877766
Q ss_pred CC
Q 031361 141 SD 142 (161)
Q Consensus 141 ~~ 142 (161)
..
T Consensus 232 a~ 233 (315)
T KOG0279|consen 232 AF 233 (315)
T ss_pred CC
Confidence 43
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.6 Score=41.70 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=63.9
Q ss_pred CCCEEEEEec-C--CeEEEEeCCCCceeEEEecCCC---eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 29 SGDLALVATL-N--GTVHLVDTKRGESRWSFSMGKP---IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~-D--G~lyAvd~~tG~~~W~f~t~~~---i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
.+..+++++. | .++|.+|..||+.. ++ |+++ ..+.....+++-++|..++.+|+++|..|+++ +--+.+.+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~-QL-Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~p~ 122 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEIT-QL-TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEVPD 122 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEE-E----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE--T
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEE-EC-ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEECCc
Confidence 4545555554 4 48999999999875 33 3322 33333334555556665556999999999998 55555554
Q ss_pred cee--cceeEeeCCeEEEEee-----------------------CCEEEEEECCCCcEEEEecCCCCCC
Q 031361 103 FMR--RMPHVWDDGALLLGHE-----------------------KTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 103 ~V~--ssP~v~~dg~VyvGs~-----------------------d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
-.. .+-++..|++.++|.. ...++.||.+||+..=.+....-..
T Consensus 123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlg 191 (386)
T PF14583_consen 123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLG 191 (386)
T ss_dssp TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EE
T ss_pred ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcccc
Confidence 433 2444455677777732 3479999999999887777655433
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.33 Score=40.50 Aligned_cols=106 Identities=15% Similarity=0.110 Sum_probs=50.3
Q ss_pred EEEEecCCeEEEEeCCCCce-eEEEecCCC---ee-cceEee-CC--C-eEEecCCCCEEEEEECCCCCeecc--ccCcc
Q 031361 33 ALVATLNGTVHLVDTKRGES-RWSFSMGKP---IY-SSFTRN-DP--D-FYVDVGEDWKLYFHRKGIGKMKKP--SIDVG 101 (161)
Q Consensus 33 V~vgs~DG~lyAvd~~tG~~-~W~f~t~~~---i~-ssp~~~-d~--~-~~V~~~ddg~Lyald~~tG~~~~w--~~~~~ 101 (161)
-++...+|.||||+. +|++ +|.-.+.+. +. ....+. .+ + -.|....+|.||+++ .+|.+.++ +....
T Consensus 85 ~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~-~dg~~~~~~~p~~~~ 162 (229)
T PF14517_consen 85 FIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT-PDGRLYRRYRPDGGS 162 (229)
T ss_dssp EEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE-TTE-EEEE---SSTT
T ss_pred EEEecCCccEEEecc-ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc-CCCceEEeCCCCCCC
Confidence 345567899999998 6886 443333222 11 111221 11 1 123444567899998 44544344 22222
Q ss_pred -cceecceeEeeCC----eEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 102 -EFMRRMPHVWDDG----ALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 102 -~~V~ssP~v~~dg----~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.....+-++.+++ ..++++-+++||+| ...|++ |++...
T Consensus 163 ~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V-~~~G~l-yr~~~p 206 (229)
T PF14517_consen 163 DRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAV-KSNGKL-YRGRPP 206 (229)
T ss_dssp --HHHH-EEEESSSGGGEEEEEE-TTS-EEEE--ETTEE-EEES--
T ss_pred CccccccceeccCCcccceEEeeCCCCcEEEE-ecCCEE-eccCCc
Confidence 2355666666544 34567889999999 467776 776654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.8 Score=43.40 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=74.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.++-...+|.|-=.|..+++++-.++. +++|.+-.....+ +.-|+| |||.+|.++..++++..-+ ... .+.
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc-ddGvl~~~s~~p~~I~~~r-~l~--rq~ 154 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC-DDGVLYDFSIGPDKITYKR-SLM--RQK 154 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec-CCceEEEEecCCceEEEEe-ecc--ccc
Confidence 588899999999999999999999988875 5567754333233 567888 4559999999999882222 211 111
Q ss_pred ceeE----eeCCe-EEEEeeCCEEEEEECCCCcEEE
Q 031361 107 MPHV----WDDGA-LLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 107 sP~v----~~dg~-VyvGs~d~~lyalDa~TG~~~W 137 (161)
+=++ ..+++ ++.||.||.+.+-|+++|..+.
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 2221 11243 8899999999999999998877
|
|
| >KOG2103 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.38 Score=46.61 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCe
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPI 62 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i 62 (161)
..++++.|.+|+|.|+|...|+..|+.-.+.+.
T Consensus 451 ~K~iIvlT~tGkiFglds~~G~i~Wkl~L~~~~ 483 (910)
T KOG2103|consen 451 RKMIIVLTSTGKIFGLDSVDGQIHWKLWLPNVQ 483 (910)
T ss_pred eeEEEEEecCceEEEEEcCCCeEEEEEecCccc
Confidence 347899999999999999999999999876654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.1 Score=39.00 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=71.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+..+++|+.||.|.-+|..+|+..=--.-+.++..---......+|-++-|..+-.+|+.+ +.+.-.++.++.|-++-
T Consensus 64 d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~~~~d~~kkVy~~~ 142 (323)
T KOG1036|consen 64 DESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVVGTFDQGKKVYCMD 142 (323)
T ss_pred CCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-cccccccccCceEEEEe
Confidence 45699999999999999999988754333344444221122335566666777888889876 33355666666677666
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
+.. ++++||..+-.+..-|.++=+.
T Consensus 143 v~g--~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 143 VSG--NRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred ccC--CEEEEeecCceEEEEEcccccc
Confidence 543 5689999999999888776543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.1 Score=39.89 Aligned_cols=123 Identities=16% Similarity=0.195 Sum_probs=86.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEeeC-CCeEEecCCCCEEEEEECCCCCeeccccC-----
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTRND-PDFYVDVGEDWKLYFHRKGIGKMKKPSID----- 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~~d-~~~~V~~~ddg~Lyald~~tG~~~~w~~~----- 99 (161)
.+..++.+|.||++..-+.+|++-.=+|+..+ ++.+-..... ...+|-|.....+|..+- .|.++| .|+
T Consensus 359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVr-sfsSGkRE 436 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVR-SFSSGKRE 436 (508)
T ss_pred CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEe-eeccCCcc
Confidence 67889999999999999999999998888644 3333222333 356777877778888774 355523 333
Q ss_pred cccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCc
Q 031361 100 VGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPM 154 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~ 154 (161)
-+++|.+.-.-. ..-+|.-.+|+.|||....+|++.......+.-.-.-+|-|-
T Consensus 437 gGdFi~~~lSpk-GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 437 GGDFINAILSPK-GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred CCceEEEEecCC-CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 334555432222 256898889999999999999999988776666555555553
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1 Score=38.71 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=69.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+|.++.-+.-+.|--.|+++=+++=+|+..--|.+...-.+...||-+++|..+|.+|-.||.. +-.+.-+ .-.|
T Consensus 194 ~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE-i~~~nkg---h~gp 269 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-IGSYNKG---HFGP 269 (334)
T ss_pred cCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCce-eeecccC---CCCc
Confidence 57777777777888888998888888888766666655555667899888999999999999988 4333111 1133
Q ss_pred eE----eeCCeEE-EEeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 109 HV----WDDGALL-LGHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 109 ~v----~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
+. +-||-+| .||.||++. +|+.....+.
T Consensus 270 VhcVrFSPdGE~yAsGSEDGTir---------lWQt~~~~~~ 302 (334)
T KOG0278|consen 270 VHCVRFSPDGELYASGSEDGTIR---------LWQTTPGKTY 302 (334)
T ss_pred eEEEEECCCCceeeccCCCceEE---------EEEecCCCch
Confidence 32 2235455 455555553 4777665554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=93.79 E-value=2.7 Score=41.89 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=62.8
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecC--------------C----CeecceE---e-eCCCeEEecCCCCEEEE
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMG--------------K----PIYSSFT---R-NDPDFYVDVGEDWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~--------------~----~i~ssp~---~-~d~~~~V~~~ddg~Lya 85 (161)
.++.+|+++. ++.|+.+|..+|+..|....+ + ....+|. + .++++||-...++.+..
T Consensus 750 dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv 829 (1057)
T PLN02919 750 DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK 829 (1057)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence 3455776655 589999999888866532110 0 0011221 1 24566776666667777
Q ss_pred EECCCCCeeccccCccc----------ceeccee---EeeCCeEEEEe-eCCEEEEEECCCCcEEEE
Q 031361 86 HRKGIGKMKKPSIDVGE----------FMRRMPH---VWDDGALLLGH-EKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~----------~V~ssP~---v~~dg~VyvGs-~d~~lyalDa~TG~~~W~ 138 (161)
+|..+|.. ......+. .-...|. +..||.+||.. .++.+..+|..+|+..-.
T Consensus 830 iD~~tg~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~ 895 (1057)
T PLN02919 830 LDPATKRV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEI 895 (1057)
T ss_pred EECCCCeE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcccee
Confidence 77777665 32222211 0012343 45567888865 677899999999986433
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.3 Score=43.85 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=66.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC----------CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK----------PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~----------~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~ 97 (161)
..+..+--|+.||.|..-|+++|+++=+--.+. |++-.| +-..+.-++.||.+...|..-|+. ...
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p---~~r~las~skDg~vrIWd~~~~~~-~~~ 242 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP---PCRRLASSSKDGSVRIWDTKLGTC-VRT 242 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC---CccceecccCCCCEEEEEccCceE-EEE
Confidence 366667789999999999999998763221111 111111 112233334454555444444433 111
Q ss_pred cCcccceeccee--E--eeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 98 IDVGEFMRRMPH--V--WDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 98 ~~~~~~V~ssP~--v--~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
...+ ..|+ + -++|.+|-||.|.++-.-++..|+....++...|-.
T Consensus 243 lsgH----T~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwv 291 (480)
T KOG0271|consen 243 LSGH----TASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWV 291 (480)
T ss_pred eccC----ccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence 1111 1222 2 236889999999999999999999998888765543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.7 Score=40.41 Aligned_cols=124 Identities=14% Similarity=0.201 Sum_probs=90.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC----eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~----i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+.+....+.||++|++|-+||+.+=.++.+.+ |++-.=..|..-++-++.|-..-..|..++++ .-.+.++..|
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl-v~t~~~~~~v 279 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL-VSTWPMGSTV 279 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce-EEEeecCCch
Confidence 578888889999999999999999999985433 33322123667777777776777778888877 4455554443
Q ss_pred ec--ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCC
Q 031361 105 RR--MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLP 153 (161)
Q Consensus 105 ~s--sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~ 153 (161)
+- --+++.++.++.-|-+|+|--+++.++++............-.+-+|
T Consensus 280 ~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 280 EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 32 34466667899999999999999999998888887766655555444
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.84 Score=42.07 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=53.0
Q ss_pred eEEEEeCCCCceeEEEecCCC---eecceEeeCCCeEEecCCC------CEEEEEECCC-CCeecccc--Ccccceecce
Q 031361 41 TVHLVDTKRGESRWSFSMGKP---IYSSFTRNDPDFYVDVGED------WKLYFHRKGI-GKMKKPSI--DVGEFMRRMP 108 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~~---i~ssp~~~d~~~~V~~~dd------g~Lyald~~t-G~~~~w~~--~~~~~V~ssP 108 (161)
.++++|+.+. .|+.-..-+ ...+.++.++.+||-++.+ ..++++|+.+ . .|.. .+........
T Consensus 433 ~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVNN--IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCCC--eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---CeeEccccCcccccce
Confidence 4788888776 587644321 2223344477777654421 2467889887 4 4532 3333333444
Q ss_pred eEeeCCeEE-EEeeCC--EEEEEECCCCcE
Q 031361 109 HVWDDGALL-LGHEKT--SVFFVDAKSGGM 135 (161)
Q Consensus 109 ~v~~dg~Vy-vGs~d~--~lyalDa~TG~~ 135 (161)
++.-++.|| +|..++ .+-+-|+.|.+.
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCcccccc
Confidence 443357888 688787 777888888764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=4.2 Score=36.11 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=60.2
Q ss_pred EEEEEecCC--eEEEEeCC--CCcee-EEEecCCCeecceEe-eCCCeEEecCC---CCEEEEEECCCCCeeccccCccc
Q 031361 32 LALVATLNG--TVHLVDTK--RGESR-WSFSMGKPIYSSFTR-NDPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 32 ~V~vgs~DG--~lyAvd~~--tG~~~-W~f~t~~~i~ssp~~-~d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~~ 102 (161)
++|+.+.+| .||.++.. +|++. -+.. +..+ ..|.. .|++.+++... ..++|.+|..+|+.+++... .
T Consensus 295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~-~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--~ 370 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNS-SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--P 370 (428)
T ss_pred EEEEECCCCCceEEEEECcccccceEEeccC-CCCc-cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--C
Confidence 344444555 57776653 23222 2221 1112 23443 35665555432 24799999999988554322 2
Q ss_pred ceecceeEeeCCe-EEEE-ee--CCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWDDGA-LLLG-HE--KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~dg~-VyvG-s~--d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.-..+|..+.||. +++. .. +..+|.+|..+|+...-+...+
T Consensus 371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g 415 (428)
T PRK01029 371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG 415 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 2345688776654 4443 32 4689999999998876665443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.35 E-value=2.8 Score=36.59 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=73.8
Q ss_pred CCCCEEEEEec---CCeEEEEeCCCCceeEEEecCC-CeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 28 ESGDLALVATL---NGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 28 ~~~~~V~vgs~---DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
..++.+|++.. ++++..+|..++++.=+...+. |... ....++ .+|+-..+++.+..+|..+-.+.++.-...-
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~-a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~ 203 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGV-AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV 203 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceE-EECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc
Confidence 36779999998 7999999999999886666664 4111 111233 3777666677999999776666223322233
Q ss_pred ceeccee---EeeCC-eEEEEeeC---CEEEEEECCCCcEEEE
Q 031361 103 FMRRMPH---VWDDG-ALLLGHEK---TSVFFVDAKSGGMICS 138 (161)
Q Consensus 103 ~V~ssP~---v~~dg-~VyvGs~d---~~lyalDa~TG~~~W~ 138 (161)
.+...|. +..|+ .+|+--.. .++..+|..+++..+.
T Consensus 204 ~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 204 GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 4555665 33333 47765444 5999999999999987
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.8 Score=37.67 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=84.5
Q ss_pred CCCCCCCEEEEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC-CC--EEEEEECCCCCeecccc
Q 031361 25 ASPESGDLALVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE-DW--KLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 25 ~s~~~~~~V~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d-dg--~Lyald~~tG~~~~w~~ 98 (161)
-||--.-+++....|| .||..|..+++ .++...+..+-.+|... |++.+++..| +| .+|..+...+..++..+
T Consensus 245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec
Confidence 3344456777778888 57999997655 88876666666666654 7777777654 22 58888888887777777
Q ss_pred CcccceecceeEeeCCe--EEEEeeCCE--EEEEECCCCcEEEEecCCCCCCCcCCCCCceeeee
Q 031361 99 DVGEFMRRMPHVWDDGA--LLLGHEKTS--VFFVDAKSGGMICSHESDNSASTLGSGLPMKKSFV 159 (161)
Q Consensus 99 ~~~~~V~ssP~v~~dg~--VyvGs~d~~--lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~~ 159 (161)
..++.. .|..+-||. +|.++.+|. +...|+.+|.- |+--+.....+.-+--|--+.++
T Consensus 324 ~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 324 SGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred cCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEE
Confidence 777655 788766665 444543454 77777877776 55554444444444444444333
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.65 Score=42.50 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCee-cceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY-SSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~-ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+-..+-++-|+.|..-|.+||+.+=+|+++.++. -.+...+...|+-++.|+++...|.++|+++.-.-.--+.|..-
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDI 348 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeee
Confidence 56778899999999999999999999999998755 22222232455544556699999999999832222222345555
Q ss_pred eeEeeCCeEEE-EeeCCEEEEEECCCCcEEE
Q 031361 108 PHVWDDGALLL-GHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 108 P~v~~dg~Vyv-Gs~d~~lyalDa~TG~~~W 137 (161)
-++.+ |.=|+ .|.|+++..-+-.++..+.
T Consensus 349 ~F~~~-g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 349 TFVDE-GRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred EEccC-CceEeeeccCccEEEEEcCCCccch
Confidence 55555 55554 5566777666655555543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.95 E-value=5.2 Score=34.03 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=69.5
Q ss_pred CCCEEEEEecC---CeEEEEeCCCCceeEEEecCCCeecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+|.+|.+|-- -.|+-+|..||+++.+.+.+....+- .++.++.+|.=.-..+..+.+|+.|-+. .-.++...
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~-~~~~~y~~-- 130 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK-IGTFPYPG-- 130 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE-EEEEE-SS--
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceE-EEEEecCC--
Confidence 56777776632 27899999999999999888765532 2344566666665666888888887655 22332221
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
++=-+..++..+++.....+||-+|++|=+++.+....
T Consensus 131 EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 131 EGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp S--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred cceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 22222244456777778889999999999998887654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.6 Score=40.05 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=56.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+..+.+....|.||.+.++|++.+=+|+..+.+...--..|+.-++-++.+|++|.+|..+-+. .-+|.-.+-|
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v 388 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC-LHRFVDDGSV 388 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-EEEEeecCcc
Confidence 56788889999999999999999999999999877654445666555565677999999877665 3344333334
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.76 E-value=2.9 Score=36.50 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.++.||-|.+.-.-|.++|+..=.|.-- +.+.+-.... +.+.||-++-|..-+..|.+.|.- +-.|..++--..
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDIN 233 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDIN 233 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce-eEeecccccccc
Confidence 6889999999999999999999999999632 2343322222 567888777777778789999977 777777765444
Q ss_pred ceeEeeCCe-EEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 107 MPHVWDDGA-LLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 107 sP~v~~dg~-VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+-...-+|. +-.||.|++....|.+....+-.|..+....
T Consensus 234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 444433454 4579999999999999999999999655443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.74 E-value=3.7 Score=35.37 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=71.5
Q ss_pred EEEEEecCCeEEEEeCCCC-ceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCe-eccccCcccceeccee
Q 031361 32 LALVATLNGTVHLVDTKRG-ESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM-KKPSIDVGEFMRRMPH 109 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG-~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~-~~w~~~~~~~V~ssP~ 109 (161)
++++--..+.||.+|+.+| +..|...-. +.+-..+.++...|.|..+ ++.++.++|.. ..+.-.-.+.-...|-
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~--~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGG--FSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCC--cccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCC
Confidence 5666777788899998877 555655332 2222223334466666555 34445565655 2222222222223342
Q ss_pred ---EeeCCeEEEEeeC------------CEEEEEECCCCcEEEEecCCCCCCCcCCCCCceeeee
Q 031361 110 ---VWDDGALLLGHEK------------TSVFFVDAKSGGMICSHESDNSASTLGSGLPMKKSFV 159 (161)
Q Consensus 110 ---v~~dg~VyvGs~d------------~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~~ 159 (161)
+.-+|.+|||+.. +++|-+|+ .|..+......-..+|.-.=+|=.|.+.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEE
Confidence 3445889998876 57999998 5777777766666666666666555443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.3 Score=39.28 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCCCEEEE-EecCC-----eEEEEeCCCCceeEEEecCCC--ee-cceEeeCCCeEEecCCC------------------
Q 031361 28 ESGDLALV-ATLNG-----TVHLVDTKRGESRWSFSMGKP--IY-SSFTRNDPDFYVDVGED------------------ 80 (161)
Q Consensus 28 ~~~~~V~v-gs~DG-----~lyAvd~~tG~~~W~f~t~~~--i~-ssp~~~d~~~~V~~~dd------------------ 80 (161)
+.+|.+|+ |..+| .+.++|..+. .|+.-..-| .. .+..+.++.+||-++.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 35667764 55544 3788888776 598744322 22 22234477777644322
Q ss_pred -----CEEEEEECCCCCeeccccC--cccc-eecceeEeeCCeEEE-EeeC------CEEEEEECCC-CcEEEEe
Q 031361 81 -----WKLYFHRKGIGKMKKPSID--VGEF-MRRMPHVWDDGALLL-GHEK------TSVFFVDAKS-GGMICSH 139 (161)
Q Consensus 81 -----g~Lyald~~tG~~~~w~~~--~~~~-V~ssP~v~~dg~Vyv-Gs~d------~~lyalDa~T-G~~~W~~ 139 (161)
..++++|+.+. .|..- +... ...+-++. ++.+|+ |..+ ..+++.|+.+ .+ |+.
T Consensus 427 ~~~~~~~ve~YDP~td---~W~~v~~m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~ 495 (557)
T PHA02713 427 DTHSSNKVIRYDTVNN---IWETLPNFWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WEL 495 (557)
T ss_pred cccccceEEEECCCCC---eEeecCCCCcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCC--eeE
Confidence 25888898876 45422 2111 22223344 477885 6543 3467888887 44 553
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.8 Score=40.94 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=48.6
Q ss_pred EEeCCCCceeEEEecCCCeecceE-------eeCCCeEEecCC---CCEEEEEECCCCCeeccccCcccceecceeE-ee
Q 031361 44 LVDTKRGESRWSFSMGKPIYSSFT-------RNDPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV-WD 112 (161)
Q Consensus 44 Avd~~tG~~~W~f~t~~~i~ssp~-------~~d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~~~V~ssP~v-~~ 112 (161)
=.|+.||..+=++ |..+..++.. ..|++-.+..++ ..+||.+|..+|+...+....++..- ..++ .+
T Consensus 14 ~~D~~TG~~VtrL-T~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~ 91 (386)
T PF14583_consen 14 WIDPDTGHRVTRL-TPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPD 91 (386)
T ss_dssp EE-TTT--EEEE--S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TT
T ss_pred EeCCCCCceEEEe-cCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecC
Confidence 3688888888776 4444433322 225554544443 67899999999998666664433222 2333 23
Q ss_pred CCeE-EEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 113 DGAL-LLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 113 dg~V-yvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+..+ |+- .+.+|++||.+|++..--|...+...
T Consensus 92 ~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 92 DRALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp SSEEEEEE-TTTEEEEEETTT--EEEEEE--TTEE
T ss_pred CCeEEEEE-CCCeEEEEECCcCcEEEEEECCcccc
Confidence 3444 454 34599999999999876666555443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.82 Score=41.45 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCC-CceeEEEecC-CCeecceEeeCC--CeEEecCCCCE--EEEEECCCCCeec-cccC
Q 031361 27 PESGDLALVATLNGTVHLVDTKR-GESRWSFSMG-KPIYSSFTRNDP--DFYVDVGEDWK--LYFHRKGIGKMKK-PSID 99 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~t-G~~~W~f~t~-~~i~ssp~~~d~--~~~V~~~ddg~--Lyald~~tG~~~~-w~~~ 99 (161)
+......++++.||+||-+|.++ |+++|+.+.- ++|.+ ...+.. ....-.+.++. |+-++..+++.++ ..+.
T Consensus 339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISg-l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISG-LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcce-EEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 34678889999999999999876 5999999874 34543 222211 11111112211 2223333332211 1223
Q ss_pred cccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 100 VGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
++.+--.++.......+-+|...+.+...|..|+..+
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3333333444444355557777777888887776554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=6.1 Score=34.78 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=59.0
Q ss_pred CCEEE-EEecCC--eEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 30 GDLAL-VATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 30 ~~~V~-vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
+..++ .++.+| .||-+|..+++.... +... + .+.. .|+..++....+ .++.+|..+|+.+.+.-. .-.
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~-~-~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~---~~~ 374 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG-Y-SAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSST---FLD 374 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC-C-CccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCC---CCC
Confidence 34344 444455 667777766655442 2211 2 2333 255555444444 577799999987443222 233
Q ss_pred cceeEeeCCe-EEEEeeCCEEEEEE--CCCCcEEEEecC
Q 031361 106 RMPHVWDDGA-LLLGHEKTSVFFVD--AKSGGMICSHES 141 (161)
Q Consensus 106 ssP~v~~dg~-VyvGs~d~~lyalD--a~TG~~~W~~~~ 141 (161)
.+|..+.||. +++++.++....++ ..+|+.+.++..
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 5787776664 66677777554443 267888888764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.66 E-value=3.3 Score=36.62 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=83.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
..+-+++.+|.|-.+-..|...|.++=++..++||.+.--.. +.+-.|-+.-...-+.++..+++...++.....-...
T Consensus 75 ~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~ 154 (405)
T KOG1273|consen 75 RDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNS 154 (405)
T ss_pred CCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccc
Confidence 478889999999999999999999999999999988643222 2223333322223555566666666666666666666
Q ss_pred cee---EeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPH---VWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~---v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+|- .... +-+|.|...|.+..+|+.|=+.+-.|+..-
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech
Confidence 665 3222 458899999999999999999998887654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.82 Score=41.64 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=33.2
Q ss_pred EecCCCCEEEEEECCCCCeeccccCccc-ceecceeEeeCCeEEEEeeCCEEEE
Q 031361 75 VDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMPHVWDDGALLLGHEKTSVFF 127 (161)
Q Consensus 75 V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP~v~~dg~VyvGs~d~~lya 127 (161)
+.+..-|+||.....||.+ .-.+..+. .|..--+..|+..++.||+||.+++
T Consensus 97 ~ag~i~g~lYlWelssG~L-L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGIL-LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred EeecccCcEEEEEeccccH-HHHHHhhccceeEEEEeCCCcEEEecCCCccEEE
Confidence 3443566899999999988 54455553 3444444444344567999998765
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.6 Score=36.77 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcee----EEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc-cCccc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESR----WSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS-IDVGE- 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~----W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~-~~~~~- 102 (161)
.+..+|++..+|.+..++...+.+. |+-.--+.=.......++++...++||+.|-+.|.+.-+...|. -+.+.
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 3455999999999998888776553 44222111111222223455556678999999998833332554 22221
Q ss_pred ---ceecceeEeeCCeEEEEeeCCEEEEEECC-CCcE
Q 031361 103 ---FMRRMPHVWDDGALLLGHEKTSVFFVDAK-SGGM 135 (161)
Q Consensus 103 ---~V~ssP~v~~dg~VyvGs~d~~lyalDa~-TG~~ 135 (161)
-|.++|- +.--|++||.|..+..+|.+ =||+
T Consensus 212 GV~SI~ss~~--~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 212 GVVSIYSSPP--KPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred ceEEEecCCC--CCceEEEeccccceeeeehhcccCc
Confidence 2444554 22358999999999999977 3444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.30 E-value=5 Score=37.22 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=77.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
-+++++.||.|.++.-=|..+|+-.=.+.....+...-.. .+...+.++-|-.+++.+..+|+.+...-.-.+.|.+.=
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc-cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 3899999999999999999999888888744332222111 223344444566888889888888444322333444433
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
. . ++.++.||.|+++-.-|+.+|+.+.....
T Consensus 339 ~-~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 339 L-D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred e-c-CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 2 3 47899999999999999999999988876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.26 E-value=3.3 Score=40.61 Aligned_cols=120 Identities=12% Similarity=0.011 Sum_probs=88.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCcee---EEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESR---WSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~---W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
...+..+.||.|+++......+|++- =+|.+ ||.-.....++...+.+++|-.+-.++..++..++---...++|
T Consensus 64 ~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl--p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 64 CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL--PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred ecccceEEeeccceEEEeeCCCCCccceeeeeec--cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 36778899999999999988888754 23322 44433333466788888888888888888887745544555666
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLG 149 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~ 149 (161)
.+--+-.+++.+-+-+.||+++..|..+|.+.-.......+++..
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 665555555667788999999999999999998888776666655
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.5 Score=39.32 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC----CeecceE-----ee--CC------------------CeEE---e
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK----PIYSSFT-----RN--DP------------------DFYV---D 76 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~----~i~ssp~-----~~--d~------------------~~~V---~ 76 (161)
.+.-||.||.|++|..-|...|+..=+...-. .+.-+|. .+ |+ +.+| .
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeee
Confidence 57889999999999999999999887653221 1111110 00 11 1111 1
Q ss_pred cCCCCEEEEEECCCCCeeccccCcccceecc------eeEeeCCeEEEEeeC-CEEEEEECCCCcEEEEecCCCCCCCcC
Q 031361 77 VGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM------PHVWDDGALLLGHEK-TSVFFVDAKSGGMICSHESDNSASTLG 149 (161)
Q Consensus 77 ~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss------P~v~~dg~VyvGs~d-~~lyalDa~TG~~~W~~~~~~~~~~~~ 149 (161)
..+| .+|....++|.+..|.++.+--.+.. -.+..+.-||..+.| +....|-.+++|-+.-|+-+++..+-.
T Consensus 368 ~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~Et 446 (460)
T KOG0285|consen 368 VNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEET 446 (460)
T ss_pred eccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCccc
Confidence 1233 24445556666666666555322222 111111225555433 456666677777776666666665544
Q ss_pred CCCCc
Q 031361 150 SGLPM 154 (161)
Q Consensus 150 ~~~~~ 154 (161)
-+++-
T Consensus 447 hPl~w 451 (460)
T KOG0285|consen 447 HPLNW 451 (460)
T ss_pred CCcCC
Confidence 44443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.27 Score=43.53 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=61.6
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCc
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTL 148 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~ 148 (161)
|+.-+.-.+.|-.+..+..++||. .-.|.-+ .+|..+-+..+...|+-.|.|+++-.-+.+|++-.-+|+..+.--.+
T Consensus 317 D~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~v 395 (508)
T KOG0275|consen 317 DNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPV 395 (508)
T ss_pred CcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccc
Confidence 444444555565777778899998 4455444 45666655555445778999999999999999999999987766666
Q ss_pred CCCCCceee
Q 031361 149 GSGLPMKKS 157 (161)
Q Consensus 149 ~~~~~~~~~ 157 (161)
++-.++.|+
T Consensus 396 nsv~~~PKn 404 (508)
T KOG0275|consen 396 NSVILLPKN 404 (508)
T ss_pred eeEEEcCCC
Confidence 665555553
|
|
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=90.82 E-value=4.3 Score=34.04 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=63.6
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEE--EecCCCeecceEeeC-----CCeEEecCCCCEEEEEECCCCCee----cc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWS--FSMGKPIYSSFTRND-----PDFYVDVGEDWKLYFHRKGIGKMK----KP 96 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~--f~t~~~i~ssp~~~d-----~~~~V~~~ddg~Lyald~~tG~~~----~w 96 (161)
+.++.+|--+.+|.||-+|..||..-.- =....++.......| +.+-|-+ ++|+=+.+++.+|... .+
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs-~~GqNlR~npdtGav~~~Dg~L 114 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVS-NTGQNLRLNPDTGAVTIVDGNL 114 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEc-cCCcEEEECCCCCCceeccCcc
Confidence 3678888888999999999999996554 222333433321111 1222222 3446666788877631 11
Q ss_pred ccCcccce-ecceeEeeCCeE----EEEee-CCEEEEEECCCCcEEEEe
Q 031361 97 SIDVGEFM-RRMPHVWDDGAL----LLGHE-KTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 97 ~~~~~~~V-~ssP~v~~dg~V----yvGs~-d~~lyalDa~TG~~~W~~ 139 (161)
.+..++.= -..|.+.. .- |-|.+ .++||.||..++.++-+-
T Consensus 115 ~y~~gd~~~G~~p~v~a--aAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 115 AYAAGDMNAGTTPGVTA--AAYTNSFAGATTSTTLYDIDTTLDALVTQN 161 (236)
T ss_pred ccCCCccccCCCCceEE--EEEecccCCCccceEEEEEecCCCeEEEec
Confidence 12111111 12566542 13 34556 789999999999988774
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=3.2 Score=38.10 Aligned_cols=126 Identities=12% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCCCCCCCCCCCCCCEEEEEecCCeEEEEeCCCCceeEEEec--C--CCeecceEee-CCCeEEecCCCCEEEEEECCCC
Q 031361 17 SLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSM--G--KPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 17 ~~~~~~~~~s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t--~--~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG 91 (161)
++|....+=.|--...+++++.--.+|..|..++++. +++. + .+......+. ++..++-.+..|.++.+.+.|+
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 3344433333433447899999999999999888764 2211 1 1122222222 4455555566779999999999
Q ss_pred CeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 92 KMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 92 ~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
.+ .-.+++.+-|...-+.++...+++-+.+|.+|..|...-+.+.+|.-++.
T Consensus 336 el-i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 336 EL-ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred hh-hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc
Confidence 88 88888888777766666534567777899999999999999888876554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=12 Score=33.37 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=64.2
Q ss_pred CCCCEEEEEecCC----eEEEEeCCCCcee-EEEecCCCeecceEee-CCC-eEEe-cCC--CCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNG----TVHLVDTKRGESR-WSFSMGKPIYSSFTRN-DPD-FYVD-VGE--DWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG----~lyAvd~~tG~~~-W~f~t~~~i~ssp~~~-d~~-~~V~-~~d--dg~Lyald~~tG~~~~w~ 97 (161)
+..-++||....| .|+..|..-.+++ ++. ++ +..+|... |++ .+.+ ..+ ...+|.+|..+|+.+++.
T Consensus 153 f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt 229 (419)
T PRK04043 153 WMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA 229 (419)
T ss_pred ceeeEEEEEEccCCCcceEEEECCCCCceeEEcc--CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe
Confidence 4556777766444 7888888655444 443 34 33445543 554 2333 222 468999999999885554
Q ss_pred cCcccceecceeEeeCC-eEEEE-ee--CCEEEEEECCCCcEEE
Q 031361 98 IDVGEFMRRMPHVWDDG-ALLLG-HE--KTSVFFVDAKSGGMIC 137 (161)
Q Consensus 98 ~~~~~~V~ssP~v~~dg-~VyvG-s~--d~~lyalDa~TG~~~W 137 (161)
. . +-....|..+-|| .+.+. +. +..+|.+|.++|+...
T Consensus 230 ~-~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 230 S-S-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred c-C-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence 3 2 2244567776555 35443 33 3689999999998554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=90.60 E-value=3.5 Score=37.90 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEE-ecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSF-SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f-~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
|-.+.++.-++.|++|.+.|..+|.++=+| +-..|+++-.-..++.....+.-||.+...+.++|++++-....+. |-
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~-If 497 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG-IF 497 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe-EE
Confidence 457788889999999999999999999999 6677888643333445555555577788777777777333222222 11
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEEC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDA 130 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa 130 (161)
.-=--.+++.|-+--+|+.+.++|.
T Consensus 498 el~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 498 ELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred EEEEcCCCCEEEEEecCCCceEEEe
Confidence 1000112233444446666666664
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.3 Score=37.92 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=42.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
.++.++++.-||.+|++|.++|+..-.|+--..-..+... +.+.-+.-+.+||.+...|.+|+|.
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce
Confidence 5677888889999999999999999999765442222221 1111222333566666667666655
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.51 E-value=11 Score=32.93 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=76.0
Q ss_pred CCCCEEEEEe-cCCeEEEEeCCCCceeEEEecCC---CeecceE---ee-CC-CeEEecCCC--CEEEEEECCCCCeecc
Q 031361 28 ESGDLALVAT-LNGTVHLVDTKRGESRWSFSMGK---PIYSSFT---RN-DP-DFYVDVGED--WKLYFHRKGIGKMKKP 96 (161)
Q Consensus 28 ~~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~---~~-d~-~~~V~~~dd--g~Lyald~~tG~~~~w 96 (161)
..+..+|+.+ .++.|+.+|. ++..+|+ .+.. ++...|. +. ++ ..|+-.... +.+..+|..++...++
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~-~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDT-SGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeC-CCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 4677788888 7889999995 6777776 4422 2222221 11 33 366665443 5899999999999777
Q ss_pred ccCcccc----eecceeEeeCCeEEEEeeC-CEEEEEECCCCcEEEEecCCCC
Q 031361 97 SIDVGEF----MRRMPHVWDDGALLLGHEK-TSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 97 ~~~~~~~----V~ssP~v~~dg~VyvGs~d-~~lyalDa~TG~~~W~~~~~~~ 144 (161)
....+.. +.-+|. ...+|+.... +.++.+|.++.++.-.+.....
T Consensus 247 ~~~~~~~~~~~v~~~p~---g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 247 DLPVGSGAPRGVAVDPA---GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred ccccccCCCCceeECCC---CCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 5665553 333332 2557887555 8999999999999998877666
|
|
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=89.96 E-value=3.2 Score=36.33 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=65.7
Q ss_pred CCCCEEEEEecCCe----EEEEeCCCCceeEEEecCCCeecceEeeCCCeEEec----CCCCEEEEEECCCCCeeccccC
Q 031361 28 ESGDLALVATLNGT----VHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDV----GEDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 28 ~~~~~V~vgs~DG~----lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~----~ddg~Lyald~~tG~~~~w~~~ 99 (161)
.++|.+|++-.||+ ||.+|+++|+.+|-.+...+ .+. ...|. .+... ..-..+.|+|..+|+.+.-.|+
T Consensus 115 P~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~-KG~-~~~D~-a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~ 191 (339)
T PF09910_consen 115 PYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL-KGT-LVHDY-ACFGINNFHKGVSGIHCLDLISGKWVIESFD 191 (339)
T ss_pred CCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc-Cce-Eeeee-EEEeccccccCCceEEEEEccCCeEEEEecc
Confidence 37899999999997 59999999999996654332 222 11111 11111 1223699999999966444556
Q ss_pred cccceecceeEeeC--------CeEEEEeeCCEEEEEECCCCcEE
Q 031361 100 VGEFMRRMPHVWDD--------GALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 100 ~~~~V~ssP~v~~d--------g~VyvGs~d~~lyalDa~TG~~~ 136 (161)
....+...|.+... +++| .=-.|-++..|+-.|+..
T Consensus 192 ~~~s~Dg~~~~~~~~G~~~s~ynR~f-aF~rGGi~vgnP~~~e~~ 235 (339)
T PF09910_consen 192 VSLSVDGGPVIRPELGAMASAYNRLF-AFVRGGIFVGNPYNGEEF 235 (339)
T ss_pred cccCCCCCceEeeccccEEEEeeeEE-EEEeccEEEeCCCCCCce
Confidence 66667777775321 2222 223456777788877664
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.4 Score=40.08 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCCCceeE
Q 031361 26 SPESGDLALVATLNGTVHLVDTKRGESRW 54 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd~~tG~~~W 54 (161)
+...+-.++.|+..|+||+-...||+++=
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~ 117 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLN 117 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHH
Confidence 34456667777799999999999999863
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=7.5 Score=34.98 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=56.3
Q ss_pred CCCEEEEEec---C----CeEEEEeCCCCceeEEEecCCC--eecc-eEeeCCCeEEecCCC--------CEEEEEECCC
Q 031361 29 SGDLALVATL---N----GTVHLVDTKRGESRWSFSMGKP--IYSS-FTRNDPDFYVDVGED--------WKLYFHRKGI 90 (161)
Q Consensus 29 ~~~~V~vgs~---D----G~lyAvd~~tG~~~W~f~t~~~--i~ss-p~~~d~~~~V~~~dd--------g~Lyald~~t 90 (161)
.++.+|+..- + ..++.+|..++ .|+....-| .... ..+.++.+||-++.+ ..++.+|+.+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 5667776432 1 35788888765 487644322 2222 233466677755421 2388899887
Q ss_pred CCeeccccCc--cc-ceecceeEeeCCeEE-EEeeC-----CEEEEEECCCCcEEEE
Q 031361 91 GKMKKPSIDV--GE-FMRRMPHVWDDGALL-LGHEK-----TSVFFVDAKSGGMICS 138 (161)
Q Consensus 91 G~~~~w~~~~--~~-~V~ssP~v~~dg~Vy-vGs~d-----~~lyalDa~TG~~~W~ 138 (161)
+ .|..-. .. ....+-++.+ +.+| +|..+ ..+++.|+++.+ |+
T Consensus 466 ~---~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~ 516 (534)
T PHA03098 466 N---KWTELSSLNFPRINASLCIFN-NKIYVVGGDKYEYYINEIEVYDDKTNT--WT 516 (534)
T ss_pred C---ceeeCCCCCcccccceEEEEC-CEEEEEcCCcCCcccceeEEEeCCCCE--EE
Confidence 6 443211 11 1222333454 6676 56543 578999988875 54
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.45 E-value=6.7 Score=35.33 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCCCEEEE-EecCC---eEEEEeCCCCceeEEEecCC--Ceecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccC-
Q 031361 28 ESGDLALV-ATLNG---TVHLVDTKRGESRWSFSMGK--PIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSID- 99 (161)
Q Consensus 28 ~~~~~V~v-gs~DG---~lyAvd~~tG~~~W~f~t~~--~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~- 99 (161)
+.+|.+|+ |..++ .+.++|+++. .|+....- |.... ..+.++.+||-++ ..-++|+.++ .|..-
T Consensus 360 ~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~---~W~~~~ 431 (480)
T PHA02790 360 SINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSN---TWTLID 431 (480)
T ss_pred EECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCC---cEeEcC
Confidence 35666665 33333 3556777654 69885432 22222 2234666776543 4455677765 55432
Q ss_pred -cccc-eecceeEeeCCeEEE-EeeC-----CEEEEEECCCCcE
Q 031361 100 -VGEF-MRRMPHVWDDGALLL-GHEK-----TSVFFVDAKSGGM 135 (161)
Q Consensus 100 -~~~~-V~ssP~v~~dg~Vyv-Gs~d-----~~lyalDa~TG~~ 135 (161)
+... ...+-++. ++.+|+ |..+ .++.+.|+++++.
T Consensus 432 ~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 432 DPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 2221 22223344 477884 6543 4677788887764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.39 E-value=4.6 Score=35.29 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecceeEeeCC--eEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMPHVWDDG--ALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP~v~~dg--~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
|+..++-|+.|-.++..|+++|+. -.+++.+. .|.+-+ ..+-| .|--||.|+++..-|.++-+.+..+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~-~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKR-IRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred CCCEEEEecCCceEEEEeccccee-eehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 667888999999999999999999 56666664 455544 33223 3556999999999999966666555
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=7.6 Score=34.93 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=54.1
Q ss_pred CCCEEEE-EecC-----CeEEEEeCCCCceeEEEecCCC--eec-ceEeeCCCeEEecCC--C----CEEEEEECCCCCe
Q 031361 29 SGDLALV-ATLN-----GTVHLVDTKRGESRWSFSMGKP--IYS-SFTRNDPDFYVDVGE--D----WKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~v-gs~D-----G~lyAvd~~tG~~~W~f~t~~~--i~s-sp~~~d~~~~V~~~d--d----g~Lyald~~tG~~ 93 (161)
.++.+|+ |..+ ..++.+|..++ .|+.-..-| -.. +....++.+||.++. + ..++.+|+.++
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-- 416 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN-- 416 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC--
Confidence 4555554 4433 24677787665 487643322 222 122346777775541 1 35888898876
Q ss_pred eccccCc--ccceecceeEeeCCeEEE-EeeC--------CEEEEEECCCCcE
Q 031361 94 KKPSIDV--GEFMRRMPHVWDDGALLL-GHEK--------TSVFFVDAKSGGM 135 (161)
Q Consensus 94 ~~w~~~~--~~~V~ssP~v~~dg~Vyv-Gs~d--------~~lyalDa~TG~~ 135 (161)
.|..-. ........++..++.+|+ |..+ ..++..|+++++.
T Consensus 417 -~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 417 -KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred -eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 443321 112222233333477774 5432 2488889888753
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.24 E-value=5.5 Score=34.89 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=78.2
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCC-CceeEE--EecCCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcc
Q 031361 26 SPESGDLALVATLNGTVHLVDTKR-GESRWS--FSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd~~t-G~~~W~--f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
||..+.++..||=||+|++-+... |...=+ ...++|+...-=..|+ .+|.++- |+.+-..|..+|+.+ .+.++
T Consensus 36 SP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~-Dk~~k~wDL~S~Q~~--~v~~H 112 (347)
T KOG0647|consen 36 SPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC-DKQAKLWDLASGQVS--QVAAH 112 (347)
T ss_pred ccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc-CCceEEEEccCCCee--eeeec
Confidence 355788888999999999866554 333221 1122333321111133 4666654 336666677777542 22332
Q ss_pred -cceecceeEeeCC--eEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCce
Q 031361 102 -EFMRRMPHVWDDG--ALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMK 155 (161)
Q Consensus 102 -~~V~ssP~v~~dg--~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~ 155 (161)
.+|.+--.+...+ -+..||+|-+|.-=|.+.-+++-+.+..+-+-.++--+||-
T Consensus 113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~ 169 (347)
T KOG0647|consen 113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMA 169 (347)
T ss_pred ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCcee
Confidence 2344433343222 35789999999999999999999998888887777777763
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.06 E-value=9.7 Score=33.06 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=76.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
+-+++-++-|++|..-|.++=+.+=.|..........++. |+..-..++.||.++-.|...|+- .-.++..+.|.+--
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~sl~ 240 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNSLC 240 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccCCCeEeeEE
Confidence 5677788999999999998888877775544444444443 667777777888888888887777 55666666555533
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+ ..+.-......++.+..-|.++++.+-.++.+..-+
T Consensus 241 f-spnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~ 277 (315)
T KOG0279|consen 241 F-SPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP 277 (315)
T ss_pred e-cCCceeEeeccCCceEEEeccchhhhhhcccccccc
Confidence 3 222223444556667777777777776666665554
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=89.02 E-value=2.7 Score=40.86 Aligned_cols=101 Identities=16% Similarity=0.302 Sum_probs=64.2
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCcee--EEEecCCCeecc-eE-----eeCCCeEEecCCCCEEEEEECCC-C-Ceeccc-
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESR--WSFSMGKPIYSS-FT-----RNDPDFYVDVGEDWKLYFHRKGI-G-KMKKPS- 97 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~--W~f~t~~~i~ss-p~-----~~d~~~~V~~~ddg~Lyald~~t-G-~~~~w~- 97 (161)
..+++.-- ....||-+|..+|+++ |+++-+.+|..- |. ..+..-|++-.+. .|+.+|++- | ++ .|.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n-~lfriDpR~~~~k~-v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDN-SLFRIDPRLSGNKL-VDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCC-ceEEeccCCCCCce-eecc
Confidence 34444432 4579999999999997 877766654421 11 1133567776544 899999864 3 33 331
Q ss_pred ---cCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCc
Q 031361 98 ---IDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 98 ---~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~ 134 (161)
+..+....+. +.+++|.|.|||.+|.+...| +.|+
T Consensus 571 ~k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd-~~g~ 608 (794)
T PF08553_consen 571 SKQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYD-RLGK 608 (794)
T ss_pred ccccccCCCceEE-EecCCceEEEEeCCCcEEeec-ccch
Confidence 2222223322 345679999999999999999 5664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=88.65 E-value=5.2 Score=37.32 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
..+..+..+.|++++.-+ .-++.|+..++.|....-.-.-+.+.++.. .|+...+|.++-.++-.+.. .+++...-
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~-~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ 454 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTA-TGRWFVLDTETQDLVTIHTD-NEQLSVVR 454 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeec-cceEEEEecccceeEEEEec-CCceEEEE
Confidence 566788899999999999 789999999998877643333344455554 44888889888555333333 33333322
Q ss_pred eEeeCCe-EEEEeeCCEEEEEEC-CCCcEEEEe
Q 031361 109 HVWDDGA-LLLGHEKTSVFFVDA-KSGGMICSH 139 (161)
Q Consensus 109 ~v~~dg~-VyvGs~d~~lyalDa-~TG~~~W~~ 139 (161)
+ +.||. +-+||.|+.+|..-. ++|+..-+.
T Consensus 455 y-sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 455 Y-SPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred E-cCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 2 22354 458999997665442 556555444
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=88.53 E-value=14 Score=31.06 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=56.8
Q ss_pred CCCEEE-EEecC-----CeEEEEeCCCCce--eEEEecCCC--ee-cceEeeCCCeEEecCC-----CCEEEEEECCCCC
Q 031361 29 SGDLAL-VATLN-----GTVHLVDTKRGES--RWSFSMGKP--IY-SSFTRNDPDFYVDVGE-----DWKLYFHRKGIGK 92 (161)
Q Consensus 29 ~~~~V~-vgs~D-----G~lyAvd~~tG~~--~W~f~t~~~--i~-ssp~~~d~~~~V~~~d-----dg~Lyald~~tG~ 92 (161)
.++.+| +|..+ ..++++|..+.+. .|+....-| .. .+..+.++.+||.++. ...++++|+.+.
T Consensus 71 ~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~- 149 (323)
T TIGR03548 71 VENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ- 149 (323)
T ss_pred ECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC-
Confidence 355554 45443 3678888877764 455433222 22 2223347777775542 136899998765
Q ss_pred eeccccC--cccceecce-eEeeCCeEE-EEeeCC----EEEEEECCCCcEEEEe
Q 031361 93 MKKPSID--VGEFMRRMP-HVWDDGALL-LGHEKT----SVFFVDAKSGGMICSH 139 (161)
Q Consensus 93 ~~~w~~~--~~~~V~ssP-~v~~dg~Vy-vGs~d~----~lyalDa~TG~~~W~~ 139 (161)
.|..- +...-+..+ ++.-++.+| +|..++ .+++.|+++.+ |+.
T Consensus 150 --~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~--W~~ 200 (323)
T TIGR03548 150 --EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ--WQK 200 (323)
T ss_pred --CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe--eEE
Confidence 44332 221122222 223347787 465543 45788988875 543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.34 E-value=6.4 Score=34.42 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=65.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..++-.+.|-+|+..|.+||+.+-+++......++-... +.....-..||+.+..+|.++-.. .-.++-+..+.+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~~kyqltA 179 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFENKYQLTA 179 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccccceeEEE
Confidence 67889999999999999999999999999988776554322 223444555777877777653222 111111111111
Q ss_pred ceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 107 MPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
-...++ .-|+.|.-|+.+-.=|++.++.....+
T Consensus 180 -v~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls 213 (338)
T KOG0265|consen 180 -VGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS 213 (338)
T ss_pred -EEecccccceeeccccCceeeeccccCcceEEee
Confidence 111111 236666666666666665555555444
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.02 E-value=2.8 Score=38.40 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=64.3
Q ss_pred EEEEecCCeEEEEeCCCCceeEEEec-CCCeecceE-eeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeE
Q 031361 33 ALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFT-RNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV 110 (161)
Q Consensus 33 V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~-~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v 110 (161)
+-.|+..|.+.-+|.++-..+-++.. ..|++..-- ..|++.++-+.||...-..|+.++.+|.--..-.++|++--..
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 33444455555555443223333332 234443221 2367788888888777777888777632223334577775555
Q ss_pred eeCC-eEEEEeeCCEEEEEECCCC-cEEEEecCCC
Q 031361 111 WDDG-ALLLGHEKTSVFFVDAKSG-GMICSHESDN 143 (161)
Q Consensus 111 ~~dg-~VyvGs~d~~lyalDa~TG-~~~W~~~~~~ 143 (161)
..++ .|+.||.||.+..-|.++= ..+-.++.+.
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 4333 5778999999988887766 5555555443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.79 E-value=3.9 Score=37.29 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=77.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc--ccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV--GEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~--~~~V~s 106 (161)
.+..|+.-+.|-.+..+++.+-..+=...+..||.+-....|+.+.+-...+..+...|.+.-++++-.+.- +.++-.
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 566777777888888888776665555666667765433334444444444445555565555553332222 223333
Q ss_pred ceeE-eeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCc
Q 031361 107 MPHV-WDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPM 154 (161)
Q Consensus 107 sP~v-~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~ 154 (161)
|=+- .++..|--||+|+.+|.=+..+|+++-.......+.|.=+--|.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 3332 23355667999999999999999999988776655555444443
|
|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
Probab=86.63 E-value=8.1 Score=27.70 Aligned_cols=84 Identities=13% Similarity=0.171 Sum_probs=47.2
Q ss_pred ecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeE
Q 031361 37 TLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGAL 116 (161)
Q Consensus 37 s~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~V 116 (161)
..||.+--.+..++.++|.=.+..|...+ ..+.-.++|+|+..+.. |.. .|.-.+.. ...+ .+
T Consensus 27 q~dgnlV~~~~~~~~~vW~snt~~~~~~~-------~~l~l~~dGnLvl~~~~-g~~-vW~S~t~~--~~~~------~~ 89 (114)
T smart00108 27 QNDYNLILYKSSSRTVVWVANRDNPVSDS-------CTLTLQSDGNLVLYDGD-GRV-VWSSNTTG--ANGN------YV 89 (114)
T ss_pred CCCEEEEEEECCCCcEEEECCCCCCCCCC-------EEEEEeCCCCEEEEeCC-CCE-EEEecccC--CCCc------eE
Confidence 35666655555447889987776654331 12222356688777654 666 55433321 0111 12
Q ss_pred EEEeeCCEEEEEECCCCcEEEE
Q 031361 117 LLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 117 yvGs~d~~lyalDa~TG~~~W~ 138 (161)
.+=-.||+|...|. .|+++|+
T Consensus 90 ~~L~ddGnlvl~~~-~~~~~W~ 110 (114)
T smart00108 90 LVLLDDGNLVIYDS-DGNFLWQ 110 (114)
T ss_pred EEEeCCCCEEEECC-CCCEEeC
Confidence 23345778887774 7889997
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.63 E-value=21 Score=31.25 Aligned_cols=112 Identities=12% Similarity=0.163 Sum_probs=67.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCC-C--CEEEEEECC--CCCee-ccccCcc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGE-D--WKLYFHRKG--IGKMK-KPSIDVG- 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~d-d--g~Lyald~~--tG~~~-~w~~~~~- 101 (161)
....++-+|.||+|---|.-|.+..=-++....=+-+-++++..-+|.|+. | =.+|-+..+ .|..+ .-.+..+
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence 456677888888887777777766554544433222222333333444432 2 134544322 34331 1123333
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.++.+--++. |+.++.||.|.+.-.=|.++|+++..|..
T Consensus 146 gylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 146 GYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred ceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecC
Confidence 2455555555 69999999999999999999999999974
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=86.62 E-value=2.9 Score=24.08 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=26.0
Q ss_pred CeEEEEe-eCCEEEEEECCCCcEEEEecCCCCC
Q 031361 114 GALLLGH-EKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 114 g~VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
+.+|+.. .++++..+|+++++++-+...+..+
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P 36 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP 36 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC
Confidence 5688866 4789999999999999998886544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.21 E-value=6.1 Score=37.39 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=73.1
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccCcccceeccee
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
|+.++| .--.||-+|...|+-+=-|++..+-.....++.-...+.|+ ++|.+-++|+++-.. .-.+.+..-|.+.|-
T Consensus 147 Dly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 147 DLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPG 224 (703)
T ss_pred cEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeecccccCCCcc
Confidence 444444 46689999999999999999886544445565556666665 478888888876443 333333333333332
Q ss_pred ------E-----eeCCe-EEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 110 ------V-----WDDGA-LLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 110 ------v-----~~dg~-VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+ .+||. |=||+.+|.+|.-|.++-++.-.-+.
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh 268 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH 268 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc
Confidence 2 33353 55899999999999999887765443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.02 E-value=13 Score=33.38 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=65.6
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
......+|.|++|...|..||+.+-++..-. =+.+......|.+++-|.||+.|...|.+++.- --...+.+.+..+-
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-mk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-MKTLEAHEHFVTSL 382 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-eeccCCCcceeEEE
Confidence 4578899999999999999999999987533 355443344678888899999999999988876 44444665555444
Q ss_pred eEeeC-CeEEEEeeCCE
Q 031361 109 HVWDD-GALLLGHEKTS 124 (161)
Q Consensus 109 ~v~~d-g~VyvGs~d~~ 124 (161)
-+..+ ..|..||=|-+
T Consensus 383 Dfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQT 399 (406)
T ss_pred ecCCCCceEEeccccce
Confidence 33221 23555665544
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.00 E-value=3.4 Score=37.37 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-------------------------------------CC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-------------------------------------DP 71 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-------------------------------------d~ 71 (161)
-+|.+|-||.|++|.--++..|+..=.++--+.=..+.+.+ .+
T Consensus 257 G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 257 GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 48999999999999999999988876654322100000000 01
Q ss_pred CeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEE-EEeeCCEEEEEECCCCcEEEEecC
Q 031361 72 DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALL-LGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 72 ~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.-.|-+.||..||..++.--+.-.-+..-++.+...-.++-|++.+ -+|.|.++..=|.+||+.+-+|+.
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 2367777888999887643332133444455555555666556433 488999999999999999888874
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.94 E-value=8.5 Score=36.93 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=55.6
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecce
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMP 108 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP 108 (161)
...+-.+-||.|.-.|. +|+.+-++.. .+=+|+-..+.++..+|-|++|+.+...+.. .. .-..+... -|.+.-
T Consensus 191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~-~q~I~lPttsiWsa~ 266 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--EC-VQVITLPTTSIWSAK 266 (745)
T ss_pred CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ce-EEEEecCccceEEEE
Confidence 36667778888888888 6666666543 3335543334466778888888766654432 11 11111111 233333
Q ss_pred eEeeCCeEEEEeeCCEEEEEE
Q 031361 109 HVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalD 129 (161)
+.. +|.|++|+.||.+|..-
T Consensus 267 ~L~-NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 267 VLL-NGDIVVGGSDGRVRVFT 286 (745)
T ss_pred Eee-CCCEEEeccCceEEEEE
Confidence 333 57899999999888654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.78 E-value=2.8 Score=36.57 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=40.4
Q ss_pred CCCCEEEEEecCCeEEEEeCC-CCceeEE---EecCC--CeecceEeeCC-CeEEecCCCCEEEEEECC
Q 031361 28 ESGDLALVATLNGTVHLVDTK-RGESRWS---FSMGK--PIYSSFTRNDP-DFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~-tG~~~W~---f~t~~--~i~ssp~~~d~-~~~V~~~ddg~Lyald~~ 89 (161)
-..++||.|+.||.|.|-|.+ .++-+|+ ..+.+ .|+++|- ++ -++.+..|+ .+..+|.+
T Consensus 176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~--~~~~I~TGsYDe-~i~~~DtR 241 (339)
T KOG0280|consen 176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP--KPTYIATGSYDE-CIRVLDTR 241 (339)
T ss_pred CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC--CCceEEEecccc-ceeeeehh
Confidence 366999999999999999998 7888887 23444 2555542 12 234455555 77777765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=85.69 E-value=19 Score=29.88 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=52.6
Q ss_pred CCCEEEEEec-CCeEEEEeCCC-C---ceeEEEecCCCeecceEeeCC-CeEEecCCCCEEEEEECCC-CCeecc-ccCc
Q 031361 29 SGDLALVATL-NGTVHLVDTKR-G---ESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGI-GKMKKP-SIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~t-G---~~~W~f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~t-G~~~~w-~~~~ 100 (161)
.+..+|+++. +|.|..+|..+ | +.+-.+......+......++ .+|+-...++.++.+|..+ |++..- ....
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence 4556777664 67777776642 3 222222211111211111133 3556666667888888765 433100 0011
Q ss_pred ccceecce---eEeeC-CeEEEEee-CCEEEEEECC--CCcEEE
Q 031361 101 GEFMRRMP---HVWDD-GALLLGHE-KTSVFFVDAK--SGGMIC 137 (161)
Q Consensus 101 ~~~V~ssP---~v~~d-g~VyvGs~-d~~lyalDa~--TG~~~W 137 (161)
.-...+.| .+..| ..+|+.+. ++++..+|.. +|++..
T Consensus 170 ~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 170 TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 11122334 23344 45788775 7777766654 666543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.60 E-value=14 Score=35.63 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=79.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.++-+|+|-+++.-+..+-+=+=.|.-. ..+.+.++. |+++||-+.=|+.+...+...-++.-| .++++.|.+
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITA 456 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITA 456 (712)
T ss_pred cCCeeEeccccccEEeecCCCcceeeEEecC-CeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhhee
Confidence 7899999999999998777776666666443 344455554 566777554465888777777777556 566776665
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.=+.=+..-.+||+.+|..+..+...=+++-++...
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 544433344889999999999998888877666543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.56 E-value=8.9 Score=36.61 Aligned_cols=110 Identities=9% Similarity=0.024 Sum_probs=65.1
Q ss_pred CCE-EEEEecCCeEEEEeCCCCceeEE--EecCCC------eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 30 GDL-ALVATLNGTVHLVDTKRGESRWS--FSMGKP------IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 30 ~~~-V~vgs~DG~lyAvd~~tG~~~W~--f~t~~~------i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.++ +..|+.||.|.+-|..+|..+=. .++++. |.=+...-.+..++-+..-|.+-..|+.+|.+ .-.+..
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTL-iqS~~~ 243 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTL-IQSHSC 243 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcch-hhhhhh
Confidence 344 88999999999999999998872 222221 11111111111222221234565566666666 444444
Q ss_pred ccceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 101 GEFMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 101 ~~~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.+.=.-+=++. ++++|+.+.-|+.++-+-..+++-.|.-.
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~ 284 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN 284 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee
Confidence 43322222333 33789999999999999988887767644
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.15 E-value=5.5 Score=37.19 Aligned_cols=99 Identities=21% Similarity=0.189 Sum_probs=66.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee------CCCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN------DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~------d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
+...-++-.++.||.|+..|-..-.++-++.- .++.|... +..++|-.+-|-++|.+|...-+ .+
T Consensus 174 ~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~---~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~------s~ 244 (673)
T KOG4378|consen 174 PSKRFLLSIASDKGAVTLWDVQGMSPIFHASE---AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA------ST 244 (673)
T ss_pred cccceeeEeeccCCeEEEEeccCCCcccchhh---hccCCcCcceecCCccceEEEecccceEEEeeccccc------cc
Confidence 44555667889999999999987777766643 22223221 33566666667789999875432 34
Q ss_pred ccceeccee----EeeCCeE-EEEeeCCEEEEEECCCCc
Q 031361 101 GEFMRRMPH----VWDDGAL-LLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 101 ~~~V~ssP~----v~~dg~V-yvGs~d~~lyalDa~TG~ 134 (161)
..++...|+ +.++|.. ..|+..|.+|+-|.+.=+
T Consensus 245 ~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 245 DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 556667776 3455654 579999999999976543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=84.82 E-value=5.1 Score=35.90 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecce------Ee-eCCCeEEecCCCCEEEEEECC-CCCeeccccCc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF------TR-NDPDFYVDVGEDWKLYFHRKG-IGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp------~~-~d~~~~V~~~ddg~Lyald~~-tG~~~~w~~~~ 100 (161)
.+..+.++..-|.+|-+|--+-.. |+ ..++.++. ++ .|+..++.+..|.++...... +-..-.|.+.
T Consensus 118 ~~~sv~v~dkagD~~~~di~s~~~-~~---~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG- 192 (390)
T KOG3914|consen 118 EDTSVLVADKAGDVYSFDILSADS-GR---CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG- 192 (390)
T ss_pred ccceEEEEeecCCceeeeeecccc-cC---cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-
Confidence 677888888889888888755333 32 33333332 22 266788888878888877532 2222123332
Q ss_pred ccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 101 GEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
+....+++.+.++-.+.=||.|+++|+=|.++|+..-.++
T Consensus 193 H~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 193 HKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 3456778888776667889999999999999999995544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=84.74 E-value=40 Score=33.81 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=60.0
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCC-------Ce-----ecce---Eee-CCC-eEEecCCCCEEEEEECCCC
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGK-------PI-----YSSF---TRN-DPD-FYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~-------~i-----~ssp---~~~-d~~-~~V~~~ddg~Lyald~~tG 91 (161)
++.+|++. .++.|+-+|..+|... .|..++ .. ...| .+. +++ +||-..+++.+..+|..+|
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 56666664 4567777887777543 222111 00 0111 111 333 5665555567777777766
Q ss_pred CeeccccC-----------cc-------cceeccee---EeeCCeEEEEe-eCCEEEEEECCCCcEEEEecCC
Q 031361 92 KMKKPSID-----------VG-------EFMRRMPH---VWDDGALLLGH-EKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 92 ~~~~w~~~-----------~~-------~~V~ssP~---v~~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.. .+... .+ +.....|. +..||.+||.. .++++..+|.++|++.....++
T Consensus 773 ~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 773 GS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred cE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 54 22110 00 00112344 44557788754 6779999999999887665543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.51 E-value=5 Score=34.75 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=63.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc-----eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS-----FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss-----p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
.++.++.|-.||.|.-.|+++|++.=.-. .++++ -...|.+.||-+..|..-..+|..+=.. .-.|.+..+
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-~Kty~te~P 233 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-LKTYTTERP 233 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeeech---hhhccccccccccCCcceEEecccCccceeeeccceee-EEEeeeccc
Confidence 78999999999999999999997754321 22322 1122668899888887888889888777 667888889
Q ss_pred eecceeEeeCCeEEEEeeC
Q 031361 104 MRRMPHVWDDGALLLGHEK 122 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d 122 (161)
|+++-..--...|+.|..+
T Consensus 234 vN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ccceecccccceEEecCCc
Confidence 8886443112336665533
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.41 E-value=12 Score=34.67 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=75.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCC-CeEEecCCCCEEEEEECCCC-CeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIG-KMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG-~~~~w~~~~~~~V~ 105 (161)
.++.++.|+.||+|-.-|..+|+.+=+++--. .+++- ++ +. ...+-+.-|+.+-+.|..++ +. .-.+.....+.
T Consensus 340 ~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl-~~-~~~~~~~Sgs~D~~IkvWdl~~~~~c-~~tl~~h~~~v 416 (537)
T KOG0274|consen 340 DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL-IV-DSENRLLSGSLDTTIKVWDLRTKRKC-IHTLQGHTSLV 416 (537)
T ss_pred cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE-Ee-cCcceEEeeeeccceEeecCCchhhh-hhhhcCCcccc
Confidence 68999999999999999999999988885422 23331 22 33 33332233457777787777 44 44444444454
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
..=... +..+.=++-|+++..=|+.+|+.+......
T Consensus 417 ~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 417 SSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred cccccc-cceeEeccccccEEEeecccCceeeeeccC
Confidence 333333 365666889999999999999999999886
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=84.35 E-value=11 Score=33.13 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=46.8
Q ss_pred ecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEee--------------------C
Q 031361 63 YSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHE--------------------K 122 (161)
Q Consensus 63 ~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~--------------------d 122 (161)
..+|.-.++.+++--...|.++++|+++|+. .--..+.++..+--.. + ...|||-. .
T Consensus 205 PhSPRWhdgrLwvldsgtGev~~vD~~~G~~-e~Va~vpG~~rGL~f~-G-~llvVgmSk~R~~~~f~glpl~~~l~~~~ 281 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRGELGYVDPQAGKF-QPVAFLPGFTRGLAFA-G-DFAFVGLSKLRESRVFGGLPIEERLDALG 281 (335)
T ss_pred CcCCcEeCCeEEEEECCCCEEEEEcCCCCcE-EEEEECCCCCccccee-C-CEEEEEeccccCCCCcCCCchhhhhhhhc
Confidence 3455555666665544556888888877766 2223333333322222 2 44555532 2
Q ss_pred CEEEEEECCCCcEEEEecCCCCCC
Q 031361 123 TSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 123 ~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
.-+-+||.+||+++--.+.++...
T Consensus 282 CGv~vidl~tG~vv~~l~feg~v~ 305 (335)
T TIGR03032 282 CGVAVIDLNSGDVVHWLRFEGVIE 305 (335)
T ss_pred ccEEEEECCCCCEEEEEEeCCcee
Confidence 458899999999887766655433
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=25 Score=29.16 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=49.3
Q ss_pred EEEEE-ecCCeEEEEeCCC-Cc--eeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECC-CCCeeccccCcccce
Q 031361 32 LALVA-TLNGTVHLVDTKR-GE--SRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKG-IGKMKKPSIDVGEFM 104 (161)
Q Consensus 32 ~V~vg-s~DG~lyAvd~~t-G~--~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~-tG~~~~w~~~~~~~V 104 (161)
.+|++ ..|+.|+.+|..+ |+ .+=++++++.... ..+. |++ +|+.+..++.++.++.. +|++.... .. ..
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~-l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~-~~--~~ 78 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQP-MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA-ES--PL 78 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCcc-EEECCCCCEEEEEECCCCcEEEEEECCCCceEEee-ee--cC
Confidence 46777 5588899999864 54 3333444322111 1222 333 57766666677666654 56542111 11 12
Q ss_pred ecceeE---eeC-CeEEEEee-CCEEEEEECC
Q 031361 105 RRMPHV---WDD-GALLLGHE-KTSVFFVDAK 131 (161)
Q Consensus 105 ~ssP~v---~~d-g~VyvGs~-d~~lyalDa~ 131 (161)
...|.. ..| ..+|+.+. ++.+..+|..
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 224441 222 34776663 6677777664
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.59 E-value=19 Score=32.45 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=73.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEE-ecCCCCEEEEEECCCCCeeccccCcccceec-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYV-DVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR- 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V-~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s- 106 (161)
.+.-...|+.|+++--.|..||+++=++.---.+.--..+.+..-|+ -|++|+.+-|.|...-+..|-.+.==..|.+
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 46677789999999999999999988874222222222333333344 5678889999998887773333221112222
Q ss_pred --ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 107 --MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 107 --sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
=|.+ .+++.|++|..+..-|.+|-..+-.+..
T Consensus 242 ~lhPTl---dvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 242 DLHPTL---DVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred eccccc---eeEEecCCcceEEEeeecccceEEEecC
Confidence 3332 5588999999999999999888877764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.49 E-value=3.4 Score=38.72 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=65.1
Q ss_pred CEEEE-EecCCeEEEEeCCCCcee--EEEecCCCee-cce-----EeeCCCeEEecCCCCEEEEEECC-CCCe-ecc---
Q 031361 31 DLALV-ATLNGTVHLVDTKRGESR--WSFSMGKPIY-SSF-----TRNDPDFYVDVGEDWKLYFHRKG-IGKM-KKP--- 96 (161)
Q Consensus 31 ~~V~v-gs~DG~lyAvd~~tG~~~--W~f~t~~~i~-ssp-----~~~d~~~~V~~~ddg~Lyald~~-tG~~-~~w--- 96 (161)
+++|. +.....||-+|..+|+.+ |+|+-+=+++ -+| +..+..-+|+-.+ -.++.+|++ .|+- .-|
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~-n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSD-NSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecC-CceEEecccccCcceeeeeec
Confidence 44442 334468999999999998 8887662222 111 1111233666544 488889874 4441 122
Q ss_pred -ccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 97 -SIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 97 -~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
.|..+.-..+--+.. +|-|.+||.+|.+..-|. .|+...+
T Consensus 425 kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKT 465 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKT 465 (644)
T ss_pred cccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhh
Confidence 344555555555544 599999999999999996 7776543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.98 E-value=5.3 Score=35.82 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=29.2
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCC-Ceec
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYS 64 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~s 64 (161)
.++..|+.||.|.--|..+-+.+|+|+... .|.+
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~G 114 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRG 114 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceee
Confidence 567889999999999999999999999866 4443
|
|
| >cd00028 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
Probab=81.89 E-value=14 Score=26.54 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=45.6
Q ss_pred CCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEE
Q 031361 39 NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLL 118 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~Vyv 118 (161)
||.+--.+...+.++|.=.+..|.... ..+.-.++|+|+..|. +|.. .|.-.+.. ...++ +.+
T Consensus 30 dgnlv~~~~~~~~~vW~snt~~~~~~~-------~~l~l~~dGnLvl~~~-~g~~-vW~S~~~~--~~~~~------~~~ 92 (116)
T cd00028 30 DYNLILYKGSSRTVVWVANRDNPSGSS-------CTLTLQSDGNLVIYDG-SGTV-VWSSNTTR--VNGNY------VLV 92 (116)
T ss_pred eEEEEEEeCCCCeEEEECCCCCCCCCC-------EEEEEecCCCeEEEcC-CCcE-EEEecccC--CCCce------EEE
Confidence 665555544347889987776652211 1122235668877765 4566 56444332 11111 222
Q ss_pred EeeCCEEEEEECCCCcEEEEe
Q 031361 119 GHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 119 Gs~d~~lyalDa~TG~~~W~~ 139 (161)
=-.||+|...|. +|+.+|+-
T Consensus 93 L~ddGnlvl~~~-~~~~~W~S 112 (116)
T cd00028 93 LLDDGNLVLYDS-DGNFLWQS 112 (116)
T ss_pred EeCCCCEEEECC-CCCEEEcC
Confidence 335778887875 58999973
|
The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=81.48 E-value=38 Score=30.06 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=54.9
Q ss_pred EEEEEecCC--eEEE--EeCCC---CceeEEEecCCCeecceEee-CCCeEEecCC-C--CEEEEEECC--CCCeecccc
Q 031361 32 LALVATLNG--TVHL--VDTKR---GESRWSFSMGKPIYSSFTRN-DPDFYVDVGE-D--WKLYFHRKG--IGKMKKPSI 98 (161)
Q Consensus 32 ~V~vgs~DG--~lyA--vd~~t---G~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d-d--g~Lyald~~--tG~~~~w~~ 98 (161)
++|+.+.+| .+|. +|..+ |+++.-......+..+|... |+..+++..+ + .++|.++.. .+..++...
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 344444444 4555 35444 45554443333344455544 5554444332 2 368888764 233423332
Q ss_pred CcccceecceeEeeCCe-EEE-EeeC--CEEEEEECCCCcEEEEe
Q 031361 99 DVGEFMRRMPHVWDDGA-LLL-GHEK--TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 99 ~~~~~V~ssP~v~~dg~-Vyv-Gs~d--~~lyalDa~TG~~~W~~ 139 (161)
.- .-..+|..+-||. +++ ...+ ..+|.+|.++|+...-.
T Consensus 325 ~~--~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 325 KY--RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT 367 (428)
T ss_pred CC--CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc
Confidence 22 2235677765554 444 4333 47999999999886544
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=81.32 E-value=16 Score=35.17 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
....+..||.|-+++--|..+|..+--|.-.. ||.+ ..+. ++....-+.+||.+...|..+|++ ...+.-+.-...
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a-l~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA-LAFSPCGRYLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIY 623 (707)
T ss_pred cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE-EEEcCCCceEeecccCCcEEEEEcCCCcc-hhhhhcccCcee
Confidence 34566778999999999999999999994322 3333 2333 444444455688999999999988 333333322233
Q ss_pred ceeEeeCCeE-EEEeeCCEEEEEECC
Q 031361 107 MPHVWDDGAL-LLGHEKTSVFFVDAK 131 (161)
Q Consensus 107 sP~v~~dg~V-yvGs~d~~lyalDa~ 131 (161)
|=.++.||.| .+|+.|+++..=|..
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEch
Confidence 3333334544 468888887766643
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.59 E-value=4.6 Score=35.63 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCCEEEEEecCC----------eEEEEeCCCCceeEEEecCCCeecceEeeCCC--eEEecCCCCEEEEEECCCCCeec
Q 031361 29 SGDLALVATLNG----------TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD--FYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 29 ~~~~V~vgs~DG----------~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~--~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
..+.+|+--..| .|-.+|.+|++.+=+++.+.++.+-....|+. +|.-...++.|+.+|+.||++++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 456777654433 25666666666666666655554322222333 44344556799999999999844
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.38 E-value=29 Score=30.51 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=65.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCC--eEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPD--FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~--~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.+.+|+.|+.|+.+.-.|..+|++. ++.+ ++|+....-+.... ..+-++-|-.|-..|.+.-.+ .-..++.+.+.
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~-~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~LPeRvY 160 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVS-QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQLPERVY 160 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCee-eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeeeccceee
Confidence 6789999999999999999999654 4433 44555433232222 334444455666667666655 55666666666
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSG 133 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG 133 (161)
+.=+.. ....|+..+-++.+.+.+++
T Consensus 161 a~Dv~~--pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 161 AADVLY--PMAVVATAERHIAVYNLENP 186 (347)
T ss_pred ehhccC--ceeEEEecCCcEEEEEcCCC
Confidence 665554 44667777777777777655
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=80.09 E-value=36 Score=28.97 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+|.+|.=| .+|..+..|+.|-+++=+|+..+.-.+ ...|++.++-+....+||.+|+++-++ .-+.++. ....
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWG--Lt~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~--~~g~ 172 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWG--LTSDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVT--DNGR 172 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--E--EEECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-E--ETTE
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEecCCcceE--EEcCCCEEEEECCccceEEECCcccce-EEEEEEE--ECCE
Confidence 455666444 678889999999888877766543222 224555444443345899999998877 4455554 3445
Q ss_pred eeE------eeCCeEEEEee-CCEEEEEECCCCcEEEEecCCC
Q 031361 108 PHV------WDDGALLLGHE-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 108 P~v------~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|+- .-||.||.==+ ...+..||++||+++-.++...
T Consensus 173 pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 173 PVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp E---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred ECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 552 12477775443 4588899999999998876543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 3e-13
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 18/138 (13%)
Query: 31 DLALVATLNGTVHLVDTKRGESRWSF------SMGKPIYSSFTRNDPDFYVDVGEDWKLY 84
D+ + A + G +H VD + G WS + + S ++ D +Y
Sbjct: 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIY 70
Query: 85 FHRKGIGKMKKP------------SIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKS 132
+ G K P + + + +D + G +T ++ ++ +
Sbjct: 71 YFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN 130
Query: 133 GGMICSHESDNSASTLGS 150
G +I + + GS
Sbjct: 131 GEIISAFGPGSKNGYFGS 148
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 4e-12
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Query: 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLY-FHR 87
L V+TL+G++H V + G +W+ + +P F D D LY
Sbjct: 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPD-PNDGSLYTLGS 66
Query: 88 KGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAST 147
K + K + E ++ P DG L +G ++ + +D +G + S + S
Sbjct: 67 KNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSL 126
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 3e-04
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 14 ILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPD 72
+L + S L + T+ + DTK E RW+ + S D
Sbjct: 114 KQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYK 173
Query: 73 FYVDVG-EDWKLY 84
V D +
Sbjct: 174 MSHFVSNGDGLVV 186
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 161 | |||
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 99.87 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.84 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.82 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.81 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.79 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.79 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.79 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.79 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.78 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.77 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.73 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.71 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.71 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.69 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.69 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.69 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.66 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.54 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.46 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 99.45 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.42 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.38 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 98.98 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.82 | |
| 3hx6_A | 570 | Type 4 fimbrial biogenesis protein PILY1; beta pro | 98.74 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.69 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 98.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.65 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.41 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.4 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.39 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.39 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.32 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.3 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.26 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.24 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.24 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.23 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.23 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.22 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.22 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.21 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.21 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.16 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.15 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.14 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.14 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.12 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.09 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.09 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.09 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.07 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.06 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.06 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.05 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.04 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.04 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.03 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.03 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.01 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.0 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.99 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 97.99 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.98 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.97 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.94 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 97.92 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.91 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.91 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.9 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.9 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.88 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.88 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.87 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.85 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.85 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.85 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.84 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.84 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.83 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.82 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.8 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.77 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.76 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.76 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.75 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.75 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.73 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.72 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.72 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.7 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.7 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.7 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.69 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.68 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.67 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.66 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.63 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.61 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.61 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.6 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.59 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.59 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.59 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.58 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.57 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.55 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.54 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.53 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.5 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.49 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.48 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.46 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.45 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.44 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.44 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.44 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.4 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.39 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.39 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.35 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 97.34 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.3 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.3 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.3 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.28 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.27 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.25 | |
| 3hx6_A | 570 | Type 4 fimbrial biogenesis protein PILY1; beta pro | 97.25 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.25 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.24 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.24 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.24 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.22 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.19 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.19 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.17 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 97.16 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.13 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.11 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.1 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.1 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.09 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.09 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.08 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.05 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.05 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.04 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.01 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.99 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 96.93 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 96.91 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 96.91 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 96.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.89 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.86 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 96.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 96.84 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 96.84 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 96.84 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.83 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 96.81 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 96.81 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.79 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.79 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.78 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 96.76 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 96.72 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 96.7 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 96.68 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 96.67 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.65 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.64 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 96.6 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 96.59 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.57 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 96.53 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.52 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 96.49 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.46 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.45 | |
| 3elq_A | 571 | Arylsulfate sulfotransferase; beta propeller, prot | 96.45 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.38 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.38 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.34 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.34 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.32 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.31 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 96.3 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 96.3 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 96.29 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.29 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.29 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 96.25 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.24 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 96.22 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.22 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.19 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 96.15 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 96.09 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 96.08 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.07 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 96.07 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 96.03 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.0 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 95.98 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 95.96 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 95.87 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 95.82 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 95.74 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.73 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 95.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 95.7 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 95.66 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 95.65 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 95.58 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 95.56 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 95.51 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 95.49 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 95.41 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 95.35 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.2 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 95.07 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 95.04 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.01 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 94.98 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 94.9 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 94.87 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 94.78 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.77 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 94.73 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 94.71 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 94.69 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 94.68 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.57 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 94.47 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 94.45 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.4 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.32 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 94.28 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 94.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 94.2 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 94.18 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.09 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 94.04 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 93.55 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 93.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 93.25 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 93.21 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 93.07 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 93.06 | |
| 2zuy_A | 620 | YESX protein; beta-propeller, lyase; 1.65A {Bacill | 93.06 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 92.88 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 92.86 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 92.44 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 92.41 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 92.33 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 92.25 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 92.16 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 92.11 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.09 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 92.06 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.95 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 91.81 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 91.8 | |
| 2zuy_A | 620 | YESX protein; beta-propeller, lyase; 1.65A {Bacill | 91.63 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 91.6 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 91.06 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 90.88 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 90.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 90.79 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 90.54 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 90.47 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 89.82 | |
| 3elq_A | 571 | Arylsulfate sulfotransferase; beta propeller, prot | 89.45 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 88.4 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 88.11 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 87.82 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 87.72 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 87.43 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 87.09 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 86.47 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 86.31 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 86.24 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 85.07 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 84.68 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 84.35 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 84.3 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 83.56 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 83.54 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 81.79 |
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-22 Score=172.93 Aligned_cols=115 Identities=18% Similarity=0.367 Sum_probs=95.6
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecC--CCeec-c-eEee-CCCeE-EecCCCCEEEEEECCCCCeeccccCcc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMG--KPIYS-S-FTRN-DPDFY-VDVGEDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~--~~i~s-s-p~~~-d~~~~-V~~~ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
..+++||++|.||.|||+|++||+++|+++++ .|+.+ + +... ++..+ +.|..||+|||+++.+|.. +|++++.
T Consensus 8 ~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~~~~~~~ 86 (339)
T 2be1_A 8 SLSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-KLPLSIR 86 (339)
T ss_dssp EEEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-EEEEEHH
T ss_pred eeCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-Eeeeccc
Confidence 35789999999999999999999999999987 33332 1 1111 33444 4556788999999999977 8999999
Q ss_pred cceecceeEe-------------eCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 102 EFMRRMPHVW-------------DDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 102 ~~V~ssP~v~-------------~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+++.+||+.. .+++||+|+++++|||||++||+++|+++...
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~ 141 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGS 141 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence 9999988882 46899999999999999999999999999874
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=151.23 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=104.3
Q ss_pred CCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEec----------CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 25 ASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSM----------GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 25 ~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t----------~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
.+| +.++.||+++.+|.|+|+|++||+++|+++. +..+.++|...++.+|+... ++.|||+|++||++
T Consensus 47 ~~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 47 LHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE-KAQVYALNTSDGTV 125 (376)
T ss_dssp CCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET-TSEEEEEETTTCCE
T ss_pred eccEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC-CCEEEEEECCCCCE
Confidence 355 5799999999999999999999999999998 45577788888888898875 55999999999999
Q ss_pred eccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 94 KKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 94 ~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
+|+++....+.++|++.+ +.||+|+.++.+|++|++||+++|++......
T Consensus 126 -~W~~~~~~~~~~~p~~~~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 126 -AWQTKVAGEALSRPVVSD-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp -EEEEECSSCCCSCCEEET-TEEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred -EEEEeCCCceEcCCEEEC-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence 999999988999999986 89999999999999999999999999876543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-21 Score=161.76 Aligned_cols=116 Identities=20% Similarity=0.323 Sum_probs=76.5
Q ss_pred CC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc--cCccc
Q 031361 26 SP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS--IDVGE 102 (161)
Q Consensus 26 s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~--~~~~~ 102 (161)
+| +.+++||+++.||.|||+|++||+++|+++. +++.++|.+.++.+|+.+..||.|||+|++||+. +|+ +..++
T Consensus 4 sP~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~ 81 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPE 81 (369)
T ss_dssp ----CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHH
T ss_pred CCeeeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCcc
Confidence 44 5799999999999999999999999999999 7888888887777777766778999999999988 555 45556
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.+.++|++.+++.||+|+.++++||+|++||+++|++....
T Consensus 82 ~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~ 122 (369)
T 2hz6_A 82 LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF 122 (369)
T ss_dssp HHTTCSCC-----CCCCEEEEEEEEECCC------------
T ss_pred ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC
Confidence 78889998445889999999999999999999999998754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=159.61 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=101.8
Q ss_pred CCCC-CCCCEEEEEec-CCeEEEEeC-CCCceeEEEecCCC-----------eecceEeeCCCeEEecCCCCEEEEEECC
Q 031361 24 RASP-ESGDLALVATL-NGTVHLVDT-KRGESRWSFSMGKP-----------IYSSFTRNDPDFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~-DG~lyAvd~-~tG~~~W~f~t~~~-----------i~ssp~~~d~~~~V~~~ddg~Lyald~~ 89 (161)
+.+| +.+++||+++. +|.|||+|+ +||+++|+++...+ +..+|.+.++.+|+... ++.|||+|++
T Consensus 55 ~~~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~l~alD~~ 133 (571)
T 2ad6_A 55 EGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-NGHLLALDAK 133 (571)
T ss_dssp CSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TSEEEEEETT
T ss_pred ccccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-CCEEEEEECC
Confidence 4556 57999999999 999999999 99999999987653 23456777888888875 5699999999
Q ss_pred CCCeeccccCccc-----ceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCCCC
Q 031361 90 IGKMKKPSIDVGE-----FMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 90 tG~~~~w~~~~~~-----~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
||++ +|++++.+ .+.++|++.+ +.||+|+. ++.+||+|++||+++|++.....
T Consensus 134 tG~~-~W~~~~~~~~~~~~~~~~P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 197 (571)
T 2ad6_A 134 TGKI-NWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGS 197 (571)
T ss_dssp TCCE-EEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred CCCE-EEEecCCCCCccceeccCCEEEC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCC
Confidence 9999 99988876 6889999986 89999987 79999999999999999998654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=143.24 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=100.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccccee--
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR-- 105 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~-- 105 (161)
+.++.||+++.||.|||+|++||+++|+++.+..+.++|.+.++.+|+... ++.||++|+.||++ +|.++....+.
T Consensus 101 ~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~-~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 101 VSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTS-NGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECT-TSEEEEEETTTCCE-EEEEECCC-----
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcC-CCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 478999999999999999999999999999999999999988888888775 55999999999999 99998876664
Q ss_pred ---cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 106 ---RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 106 ---ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
++|++.+ +.||+|+.++.++++|++||+++|++....
T Consensus 179 ~~~~~~~~~~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 179 RGESAPTTAF-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp CCCCCCEEET-TEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred cCCCCcEEEC-CEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 8899885 889999999999999999999999998653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=158.11 Aligned_cols=118 Identities=11% Similarity=0.117 Sum_probs=100.7
Q ss_pred CCCC-CCCCEEEEEec-CCeEEEEeC-CCCceeEEEecCCCe-----------ecceEe--eCCC----eEEecCCCCEE
Q 031361 24 RASP-ESGDLALVATL-NGTVHLVDT-KRGESRWSFSMGKPI-----------YSSFTR--NDPD----FYVDVGEDWKL 83 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~-DG~lyAvd~-~tG~~~W~f~t~~~i-----------~ssp~~--~d~~----~~V~~~ddg~L 83 (161)
+.+| +.+++||+++. +|.|||+|+ +||+++|+++...+. ...+.+ .++. +|+... ++.|
T Consensus 55 ~~tP~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-dg~l 133 (599)
T 1w6s_A 55 EGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-DGNV 133 (599)
T ss_dssp CSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-TSEE
T ss_pred eeccEEECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-CCEE
Confidence 4566 57999999999 999999999 999999999987542 234566 5666 888765 5699
Q ss_pred EEEECCCCCeeccccCccc-----ceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCCCC
Q 031361 84 YFHRKGIGKMKKPSIDVGE-----FMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 84 yald~~tG~~~~w~~~~~~-----~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
||+|++||++ +|++++.+ .+.++|++.+ ++||+|+. ++.+||+|++||+++|++.....
T Consensus 134 ~AlDa~TG~~-~W~~~~~~~~~~~~~~ssP~v~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 134 AALNAETGET-VWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp EEEETTTCCE-EEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEECCCCCE-EEeecCCCCCccceeecCCEEEC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 9999999999 99988876 7889999986 88999985 89999999999999999998754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=160.04 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=101.5
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-----------eecceEeeCCCeEEecCCCCEEEEEECCCC
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-----------IYSSFTRNDPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-----------i~ssp~~~d~~~~V~~~ddg~Lyald~~tG 91 (161)
+.+| +.+++||+++.+|.|||+|++||+++|+++...+ +..++.+.++.+|+... ++.|||+|+.||
T Consensus 70 ~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-dg~l~alD~~tG 148 (677)
T 1kb0_A 70 EATPVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-DGRLIALDAATG 148 (677)
T ss_dssp CCCCEEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-TSEEEEEETTTC
T ss_pred eeCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-CCEEEEEECCCC
Confidence 4556 6799999999999999999999999999998754 23456666777888865 569999999999
Q ss_pred CeeccccCcc------cceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCCCCC
Q 031361 92 KMKKPSIDVG------EFMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 92 ~~~~w~~~~~------~~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
++ +|++++. ..+.++|++.+ +.||+|+. ++.+||+|++||+++|++......
T Consensus 149 ~~-~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 212 (677)
T 1kb0_A 149 KE-VWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGD 212 (677)
T ss_dssp CE-EEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred CE-EeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCC
Confidence 99 9999887 46889999986 88999986 699999999999999999876543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=159.22 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=98.8
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-----------eecceEeeCCCeEEecCCCCEEEEEECCCC
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-----------IYSSFTRNDPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-----------i~ssp~~~d~~~~V~~~ddg~Lyald~~tG 91 (161)
+.+| +.+++||+++.+|.|||+|++||+++|+++...+ +..+|.+.++.+|+.+. ++.|||+|++||
T Consensus 63 ~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-dg~l~AlDa~TG 141 (689)
T 1yiq_A 63 EATPIVVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-DGRLEAIDAKTG 141 (689)
T ss_dssp CCCCEEETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TSEEEEEETTTC
T ss_pred eecCEEECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-CCEEEEEECCCC
Confidence 4556 5799999999999999999999999999987643 23456677778888875 569999999999
Q ss_pred CeeccccCcc------cceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCC
Q 031361 92 KMKKPSIDVG------EFMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 92 ~~~~w~~~~~------~~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~ 142 (161)
++ +|+++.. ..+.++|++.+ +.||+|+. ++.++|+|++||+++|++...
T Consensus 142 ~~-~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 202 (689)
T 1yiq_A 142 QR-AWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTV 202 (689)
T ss_dssp CE-EEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CE-eeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEeccc
Confidence 99 9998876 46888999986 88999874 689999999999999999864
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=157.38 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=98.5
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe-----------ecceEeeCCCeEEecCCCCEEEEEECCCC
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI-----------YSSFTRNDPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i-----------~ssp~~~d~~~~V~~~ddg~Lyald~~tG 91 (161)
+.+| +.+++||+++.+|.|||+|++||+++|+++...+. ..+|.+.++.+|+.+. ++.|||+|++||
T Consensus 59 ~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~l~alD~~tG 137 (668)
T 1kv9_A 59 EATPLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-DGRLIALDAKTG 137 (668)
T ss_dssp CCCCEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-TSEEEEEETTTC
T ss_pred ccCCEEECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-CCEEEEEECCCC
Confidence 4556 58999999999999999999999999999876542 2445666778888875 569999999999
Q ss_pred CeeccccCcc-----cceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCC
Q 031361 92 KMKKPSIDVG-----EFMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 92 ~~~~w~~~~~-----~~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~ 142 (161)
++ +|+++.. ..+.++|++.+ +.||+|+. ++.++|+|++||+++|++...
T Consensus 138 ~~-~W~~~~~~~~~~~~~~~~P~v~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 197 (668)
T 1kv9_A 138 KA-IWSQQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (668)
T ss_dssp CE-EEEEECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CE-eeeeccCCCCCcceecCCCEEEC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence 99 9998875 35788999986 88999976 489999999999999999864
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=153.75 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=98.4
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe---------ecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI---------YSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i---------~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
+.+| +.+++||+++.++.|||+|++||+++|++++..+. ..++.+.++.+|+... ++.|||+|++||++
T Consensus 61 ~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-dg~l~AlD~~TG~~ 139 (582)
T 1flg_A 61 ESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-DASVVALNKNTGKV 139 (582)
T ss_dssp CCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-TTEEEEEESSSCCE
T ss_pred eeccEEECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-CCEEEEEECCCCCE
Confidence 4556 67999999999777999999999999999987653 2455667788888875 55999999999999
Q ss_pred eccccCccc-----ceecceeEeeCC------eEEEEee------CCEEEEEECCCCcEEEEecCC
Q 031361 94 KKPSIDVGE-----FMRRMPHVWDDG------ALLLGHE------KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 94 ~~w~~~~~~-----~V~ssP~v~~dg------~VyvGs~------d~~lyalDa~TG~~~W~~~~~ 142 (161)
+|++++.. .+.++|++.+ + .||+|+. ++.+||+|++||+++|++...
T Consensus 140 -~W~~~~~~~~~~~~~~~sP~v~~-~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~ 203 (582)
T 1flg_A 140 -VWKKKFADHGAGYTMTGAPTIVK-DGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV 203 (582)
T ss_dssp -EEEEECSCGGGTCBCCSCCEEEE-CTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred -EeeecCCCCCcCcccccCCEEeC-CCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCC
Confidence 99988765 5788999987 6 8999975 899999999999999998764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=148.45 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=96.7
Q ss_pred CCCE----EEEEecCCeEEEEeCCCCceeEEEecCC-----CeecceEeeCCCeEEecC-----CCCEEEEEECCCCCee
Q 031361 29 SGDL----ALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDPDFYVDVG-----EDWKLYFHRKGIGKMK 94 (161)
Q Consensus 29 ~~~~----V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----~i~ssp~~~d~~~~V~~~-----ddg~Lyald~~tG~~~ 94 (161)
.+++ ||+++.||.|||+|++||+++|+++++. .+.++|.+.++.+||++. .+|.|||+|++||++
T Consensus 116 ~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~- 194 (599)
T 1w6s_A 116 GDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ- 194 (599)
T ss_dssp CCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE-
T ss_pred cCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcE-
Confidence 5788 9999999999999999999999999876 678899988888888774 367999999999999
Q ss_pred ccccCcccce--------------------------------------ecceeEe-eCCeEEEEeeC-------------
Q 031361 95 KPSIDVGEFM--------------------------------------RRMPHVW-DDGALLLGHEK------------- 122 (161)
Q Consensus 95 ~w~~~~~~~V--------------------------------------~ssP~v~-~dg~VyvGs~d------------- 122 (161)
+|++.+.... ..+|.+. +++.||+|+.+
T Consensus 195 ~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~ 274 (599)
T 1w6s_A 195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDN 274 (599)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCc
Confidence 9988776433 1244543 35889999876
Q ss_pred ---CEEEEEECCCCcEEEEecCCCC
Q 031361 123 ---TSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 123 ---~~lyalDa~TG~~~W~~~~~~~ 144 (161)
++++|||++||+++|+|+...+
T Consensus 275 ~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 275 KWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp TTSSEEEEEETTTCCEEEEEESSTT
T ss_pred cccceEEEEeCCCCceeeEeecCCC
Confidence 4899999999999999998754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=143.05 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=95.1
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-----CeecceEeeCCCeEEecCC-----CCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDPDFYVDVGE-----DWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----~i~ssp~~~d~~~~V~~~d-----dg~Lyald~~tG~~~~w~ 97 (161)
+.+++||+++.||.|||+|++||+++|+++.+. .+.++|.+.++.+|+.+.. ++.|||+|++||++ +|+
T Consensus 113 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~ 191 (571)
T 2ad6_A 113 YGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL-KWR 191 (571)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE-EEE
T ss_pred EECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE-EEE
Confidence 469999999999999999999999999999876 6788898888889998763 67999999999999 998
Q ss_pred cCcccce--------------------------------------ecceeEe-eCCeEEEEeeC----------------
Q 031361 98 IDVGEFM--------------------------------------RRMPHVW-DDGALLLGHEK---------------- 122 (161)
Q Consensus 98 ~~~~~~V--------------------------------------~ssP~v~-~dg~VyvGs~d---------------- 122 (161)
+.+.... ..++++. +++.||+|+.+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 8765432 0234443 23789999853
Q ss_pred CEEEEEECCCCcEEEEecCCC
Q 031361 123 TSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 123 ~~lyalDa~TG~~~W~~~~~~ 143 (161)
++++|||++||+++|+++...
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp TEEEEEETTTCCEEEEEESST
T ss_pred EEEEEEecCCCcEEEEecCCC
Confidence 369999999999999998764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=146.11 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=94.2
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecC------CCeecceEeeCCCeEEecCC-----CCEEEEEECCCCCeecc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMG------KPIYSSFTRNDPDFYVDVGE-----DWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~------~~i~ssp~~~d~~~~V~~~d-----dg~Lyald~~tG~~~~w 96 (161)
+.+++||+++.||.|||+|++||+++|+++.. ..+.++|.+.++.+|+++.. +|.|+|+|+.||++ +|
T Consensus 119 ~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W 197 (689)
T 1yiq_A 119 VWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE-AW 197 (689)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EE
T ss_pred EECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE-EE
Confidence 47899999999999999999999999999986 35677888888888887642 57999999999999 88
Q ss_pred ccCcc-------------------------------cceecceeEe-eCCeEEEEeeCCE-------------------E
Q 031361 97 SIDVG-------------------------------EFMRRMPHVW-DDGALLLGHEKTS-------------------V 125 (161)
Q Consensus 97 ~~~~~-------------------------------~~V~ssP~v~-~dg~VyvGs~d~~-------------------l 125 (161)
++.+. ..+.+++.+. +++.||+|+.++. +
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 87531 1122355554 2488999998864 9
Q ss_pred EEEECCCCcEEEEecCCC
Q 031361 126 FFVDAKSGGMICSHESDN 143 (161)
Q Consensus 126 yalDa~TG~~~W~~~~~~ 143 (161)
+|+|++||+++|+|+...
T Consensus 278 ~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp EEEETTTCCEEEEEESST
T ss_pred EEEEccCCceeEeeecCC
Confidence 999999999999998754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=142.06 Aligned_cols=116 Identities=14% Similarity=0.114 Sum_probs=92.6
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-----CeecceEeeCC------CeEEecC-----CCCEEEEEECCCC
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDP------DFYVDVG-----EDWKLYFHRKGIG 91 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----~i~ssp~~~d~------~~~V~~~-----ddg~Lyald~~tG 91 (161)
+.+++||+++.||.|||+|++||+++|+++... .+.++|.+.++ .+|+++. .++.|||+|+.||
T Consensus 115 ~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 115 IYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp EETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred EECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 579999999999999999999999999999876 46788887766 6777653 2679999999999
Q ss_pred CeeccccCccc-----------------------------------------ceecceeEe-eCCeEEEEee--------
Q 031361 92 KMKKPSIDVGE-----------------------------------------FMRRMPHVW-DDGALLLGHE-------- 121 (161)
Q Consensus 92 ~~~~w~~~~~~-----------------------------------------~V~ssP~v~-~dg~VyvGs~-------- 121 (161)
++ +|.....+ .+.++|++. +.+.||+|+.
T Consensus 195 ~~-~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 195 EE-IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CE-EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CE-EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 99 88765431 122345554 3488999984
Q ss_pred ------------C----CEEEEEECCCCcEEEEecCCCC
Q 031361 122 ------------K----TSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 122 ------------d----~~lyalDa~TG~~~W~~~~~~~ 144 (161)
| ++++|||++||+++|+|+...+
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~ 312 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPN 312 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTT
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCC
Confidence 2 6999999999999999987543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=143.84 Aligned_cols=116 Identities=11% Similarity=0.013 Sum_probs=95.8
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecC------CCeecceEeeCCCeEEecCC-----CCEEEEEECCCCCeecc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMG------KPIYSSFTRNDPDFYVDVGE-----DWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~------~~i~ssp~~~d~~~~V~~~d-----dg~Lyald~~tG~~~~w 96 (161)
+.++.||+++.||.|||+|++||+++|+++++ ..+.++|.+.++.+|+.... ++.|||+|+.||++ +|
T Consensus 126 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~-~W 204 (677)
T 1kb0_A 126 LWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGER-KW 204 (677)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EE
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcE-EE
Confidence 47899999999999999999999999999987 46778888888888987753 57999999999999 99
Q ss_pred ccCccccee--------------------------------cceeEe-eCCeEEEEeeCC-------------------E
Q 031361 97 SIDVGEFMR--------------------------------RMPHVW-DDGALLLGHEKT-------------------S 124 (161)
Q Consensus 97 ~~~~~~~V~--------------------------------ssP~v~-~dg~VyvGs~d~-------------------~ 124 (161)
++.+..... .+|++. +++.||+++.++ +
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 887643221 244543 347899998774 5
Q ss_pred EEEEECCCCcEEEEecCCCC
Q 031361 125 VFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 125 lyalDa~TG~~~W~~~~~~~ 144 (161)
++|||++||+++|+|+...+
T Consensus 285 v~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp EEEECTTTCCEEEEEESSTT
T ss_pred EEEEECCCCCEEEEEecCCC
Confidence 99999999999999997543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=143.55 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=94.1
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-----CeecceEeeCCCeEEecCC-----CCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDPDFYVDVGE-----DWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----~i~ssp~~~d~~~~V~~~d-----dg~Lyald~~tG~~~~w~ 97 (161)
+.+++||+++.||.|||+|++||+++|++++.. .+.++|.+.++.+|+++.. +|.|||+|++||++ +|+
T Consensus 115 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~ 193 (668)
T 1kv9_A 115 LWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL-AWR 193 (668)
T ss_dssp EEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEE
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE-EEE
Confidence 468999999999999999999999999999853 4667888888888887653 57999999999999 888
Q ss_pred cCcc--c-----------------------------ceecceeEe-eCCeEEEEeeCCE-------------------EE
Q 031361 98 IDVG--E-----------------------------FMRRMPHVW-DDGALLLGHEKTS-------------------VF 126 (161)
Q Consensus 98 ~~~~--~-----------------------------~V~ssP~v~-~dg~VyvGs~d~~-------------------ly 126 (161)
+.+. . .+.++|++. +.+.||+|+.++. ++
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 7642 1 122345654 2478999998764 99
Q ss_pred EEECCCCcEEEEecCCC
Q 031361 127 FVDAKSGGMICSHESDN 143 (161)
Q Consensus 127 alDa~TG~~~W~~~~~~ 143 (161)
|||++||+++|+++...
T Consensus 274 AlD~~tG~~~W~~~~~~ 290 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTP 290 (668)
T ss_dssp EECTTTCCEEEEEESST
T ss_pred EEcCCCCceeeEeecCC
Confidence 99999999999999763
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-17 Score=136.98 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=70.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.++.||+|+.||.|||+|++||+++|+++....+..+| .++.+|+.. .++.|+++|+++|++ +|.++... .++|
T Consensus 91 ~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p--~~~~v~~~~-~dg~v~a~d~~tG~~-~W~~~~~~--~~~~ 164 (369)
T 2hz6_A 91 SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSP--STSLLYLGR-TEYTITMYDTKTREL-RWNATYFD--YAAS 164 (369)
T ss_dssp ----CCCCEEEEEEEEECCC------------------------EEEEE-EEEEEECCCSSSSSC-CCEEEEEE--ECCB
T ss_pred cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccc--cCCEEEEEe-cCCEEEEEECCCCCE-EEeEeccc--ccCc
Confidence 68899999999999999999999999999887666666 445677765 456999999999999 99988664 3677
Q ss_pred eEeeC----CeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 109 HVWDD----GALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 109 ~v~~d----g~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
++.++ +.+|+++.++.++|+|++||+++|+++.
T Consensus 165 ~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 165 LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred cccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 77643 6799999999999999999999999984
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-14 Score=113.54 Aligned_cols=119 Identities=11% Similarity=0.180 Sum_probs=94.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-----
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE----- 102 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~----- 102 (161)
..++.++..+.+|.|+|+|++ |+++|+|..+...++++...+++.+|.+.+++.++++|+.||++ .|.+...+
T Consensus 134 ~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~ 211 (276)
T 3no2_A 134 KKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI-VRRVNANDIEGVQ 211 (276)
T ss_dssp TTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE-EEEEEGGGSBSCC
T ss_pred CCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-EEEecCCCCCCcc
Confidence 356777778889999999998 99999999987777777776778888777777999999999999 99886542
Q ss_pred c--eecceeEeeCCeEEEEeeCC-----------EEEEEECCCCcEEEEecCCCCCCCcCC
Q 031361 103 F--MRRMPHVWDDGALLLGHEKT-----------SVFFVDAKSGGMICSHESDNSASTLGS 150 (161)
Q Consensus 103 ~--V~ssP~v~~dg~VyvGs~d~-----------~lyalDa~TG~~~W~~~~~~~~~~~~~ 150 (161)
+ +.+.|... +|.+|+++.++ .+|.||+ +|+++|+|......-++-+
T Consensus 212 l~~~~~~~~~~-~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 212 LFFVAQLFPLQ-NGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp CSEEEEEEECT-TSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEEEEECCTTTSCCCCE
T ss_pred ccccccceEcC-CCCEEEEeccCccccccccCCceEEEECC-CCCEEEEecCcccccceee
Confidence 1 33344444 58899998644 5999995 9999999998877755544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.1e-13 Score=105.03 Aligned_cols=109 Identities=21% Similarity=0.382 Sum_probs=91.1
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
+.++.+|+++.+|.|+++|+. |+.+|++....++..++... ++.++++.. ++.||++|+. |+. .|.+........
T Consensus 105 ~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~-~~~l~~~d~~-g~~-~~~~~~~~~~~~ 180 (330)
T 3hxj_A 105 IFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSN-DNYLYAINPD-GTE-KWRFKTNDAITS 180 (330)
T ss_dssp EETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECT-TSEEEEECTT-SCE-EEEEECSSCCCS
T ss_pred EECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcC-CCEEEEECCC-CCE-eEEEecCCCcee
Confidence 358999999999999999998 99999999888777777665 567777764 5589999988 888 888888777888
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+|++..++.+|+|+ +.+|++| .+|+.+|++....
T Consensus 181 ~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~ 214 (330)
T 3hxj_A 181 AASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGY 214 (330)
T ss_dssp CCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSS
T ss_pred eeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCC
Confidence 88886668899999 8899999 8999999988543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=117.00 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=82.9
Q ss_pred CCCEEEEE--ecCCeEEEEeCCCCceeEEEecCCCeecceEe--------------eCCCeEEecCCCCEEEEEECCCCC
Q 031361 29 SGDLALVA--TLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR--------------NDPDFYVDVGEDWKLYFHRKGIGK 92 (161)
Q Consensus 29 ~~~~V~vg--s~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~--------------~d~~~~V~~~ddg~Lyald~~tG~ 92 (161)
.++.+|++ +.||.|||+|+.+|..+|.+.+...+.++|.. .++.+|++.. +|++||+|+.||+
T Consensus 54 ~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~-~g~l~ald~~tG~ 132 (339)
T 2be1_A 54 ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSM-RTIMYTINMLNGE 132 (339)
T ss_dssp TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEE-EEEEEEEETTTCC
T ss_pred cCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEec-CCEEEEEECCCCc
Confidence 46677776 68999999999999999999886655555544 5566777775 5599999999999
Q ss_pred eeccccCcccce-------ec-------------ceeEe----------------------------------------e
Q 031361 93 MKKPSIDVGEFM-------RR-------------MPHVW----------------------------------------D 112 (161)
Q Consensus 93 ~~~w~~~~~~~V-------~s-------------sP~v~----------------------------------------~ 112 (161)
+ +|.+.++... +. .|++. .
T Consensus 133 ~-~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~ 211 (339)
T 2be1_A 133 I-ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDGASYNVTYSTWQQNVLDVPLALQNTFSK 211 (339)
T ss_dssp E-EEEESTTCBCC--------------------CCEEEEEEEEEECEECCTTSCCCCCEEEEEECCTTTHHHHTTCSSCS
T ss_pred E-EEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEECCCCCeEEEeccccccccccccccccccccc
Confidence 9 9999876421 11 22221 1
Q ss_pred CCeEEEEeeCCEEEEEECCCCcEEE-Eec
Q 031361 113 DGALLLGHEKTSVFFVDAKSGGMIC-SHE 140 (161)
Q Consensus 113 dg~VyvGs~d~~lyalDa~TG~~~W-~~~ 140 (161)
|+.+|+++.|+.+||+|+++|+++| +.+
T Consensus 212 Dg~~~~~~~dg~v~A~d~~~G~~~W~~~~ 240 (339)
T 2be1_A 212 DGMCIAPFRDKSLLASDLDFRIARWVSPT 240 (339)
T ss_dssp SSCCEEEETTTEEEEECSTTCCEEEECCC
T ss_pred CCcEEEECCCCEEEEEECCCCcEEEEeec
Confidence 2556888999999999999999999 553
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=102.73 Aligned_cols=108 Identities=16% Similarity=0.274 Sum_probs=92.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.++.+++|+.+|.|+++|.. |+.+|+++...+...++.. .++.++++. +.||++| .+|+. .|.+........+
T Consensus 146 ~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~-~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 146 EDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE-KWNFYAGYWTVTR 219 (330)
T ss_dssp TTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE-EEEECCSSCCCSC
T ss_pred CCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE-EEEEccCCcceec
Confidence 37899999999999999999 9999999988777777766 366788877 5799999 88988 8988888777888
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|++..++.+|+|+.++.++++| .+|+.+|++....
T Consensus 220 ~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~ 254 (330)
T 3hxj_A 220 PAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGK 254 (330)
T ss_dssp CEECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSS
T ss_pred eEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCC
Confidence 8888778999999999999998 5899999998654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=104.78 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=83.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC--CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc--cee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE--FMR 105 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~--~V~ 105 (161)
+++++.++.|+.|+++|++||+++|+|+.+. ..+..+...++.+++ +. +..++++|+ +|++ .|.++.+. .+.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~-~~~V~~~d~-~G~~-~W~~~~~~~~~~~ 80 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY-SKGAKMITR-DGRE-LWNIAAPAGCEMQ 80 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC-BSEEEEECT-TSCE-EEEEECCTTCEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC-CCCEEEECC-CCCE-EEEEcCCCCcccc
Confidence 5788999999999999999999999999875 344444455777777 44 458999999 8999 99998863 444
Q ss_pred cceeEeeCCeEEEEe-e-CCEEEEEECCCCcEEEEecCCC
Q 031361 106 RMPHVWDDGALLLGH-E-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 106 ssP~v~~dg~VyvGs-~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+.+.+. ||.++++. . +++++++|+ +|+++|++....
T Consensus 81 ~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~ 118 (276)
T 3no2_A 81 TARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFET 118 (276)
T ss_dssp EEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECC
T ss_pred ccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC
Confidence 444444 46676654 4 689999996 999999998643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-08 Score=79.74 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=84.0
Q ss_pred CCCEEEEEec-------CCeEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 29 SGDLALVATL-------NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~-------DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.++.+|+++. +|.|+.+|..+|+++++++.+....+.....++. +|+....++.++.+|..+|+. .+.+..
T Consensus 51 dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~ 129 (353)
T 3vgz_A 51 QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV-KGRLVL 129 (353)
T ss_dssp TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEES
T ss_pred CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee-EEEEec
Confidence 5678999884 5689999999999999999876544432333555 777777778999999999998 666665
Q ss_pred cccee---------cceeEeeC-CeEEEEe--eCCEEEEEECCCCcEEEEecCC
Q 031361 101 GEFMR---------RMPHVWDD-GALLLGH--EKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 101 ~~~V~---------ssP~v~~d-g~VyvGs--~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+.... ....+..| +.+|+++ .++.++.+|.++|+.++.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 130 DDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred CCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence 43221 12234434 4588887 3789999999999999999833
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-07 Score=76.79 Aligned_cols=112 Identities=6% Similarity=0.020 Sum_probs=84.1
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCccc----
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE---- 102 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~---- 102 (161)
.++.+|+++. +|.|..+|++||+++.+++....... .++ .++.+||....++.++.+|+.++++ .+.++++.
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~-i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~ 129 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRY-IHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDME 129 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEE-EEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTT
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcE-EEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCcccc
Confidence 5788888887 58999999999999999965433332 233 4667788775577999999999998 66666554
Q ss_pred --ceecceeEeeCCeEEEEee--CCEEEEEECCCCcEEEEecCCCC
Q 031361 103 --FMRRMPHVWDDGALLLGHE--KTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 103 --~V~ssP~v~~dg~VyvGs~--d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
.... -++ +++.+|+... ++.++.+|++||+++++......
T Consensus 130 ~~~p~~-i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~ 173 (328)
T 3dsm_A 130 SGSTEQ-MVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ 173 (328)
T ss_dssp TCBCCC-EEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC
T ss_pred CCCcce-EEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC
Confidence 2221 123 4688999984 88999999999999999876543
|
| >3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.9e-08 Score=87.27 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=79.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC----------CCee----------cceEee----CC---CeEEecC--C
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG----------KPIY----------SSFTRN----DP---DFYVDVG--E 79 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~----------~~i~----------ssp~~~----d~---~~~V~~~--d 79 (161)
-..+||+|+-||.|||+|+. |+++|.|-.. .+-+ ++|.+. ++ .+.++.. .
T Consensus 84 R~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~G 162 (570)
T 3hx6_A 84 RAPRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAG 162 (570)
T ss_dssp CCCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTS
T ss_pred CccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCC
Confidence 35799999999999999998 9999999431 1111 233322 22 1233332 3
Q ss_pred CCEEEEEECCC---CCeeccccCcc-----cceecceeEeeC----CeEEEEee------CCEEEEEECCCCcEEEEecC
Q 031361 80 DWKLYFHRKGI---GKMKKPSIDVG-----EFMRRMPHVWDD----GALLLGHE------KTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 80 dg~Lyald~~t---G~~~~w~~~~~-----~~V~ssP~v~~d----g~VyvGs~------d~~lyalDa~TG~~~W~~~~ 141 (161)
+..+||||..+ .++ .|.++.. .+..+.|.|..- -.++||+- ...||.||++||+++|++..
T Consensus 163 G~~~yALDVT~P~~p~~-LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~ 241 (570)
T 3hx6_A 163 GKGLFALDVTDPANIKL-LWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEV 241 (570)
T ss_dssp CSEEEEEECSSGGGCEE-EEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEE
T ss_pred CcEEEEEECCCCCCCce-eEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEec
Confidence 45799999754 667 8988732 248899998642 25788884 56999999999999999987
Q ss_pred CC
Q 031361 142 DN 143 (161)
Q Consensus 142 ~~ 143 (161)
..
T Consensus 242 ~~ 243 (570)
T 3hx6_A 242 TG 243 (570)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-07 Score=71.40 Aligned_cols=112 Identities=16% Similarity=0.069 Sum_probs=82.1
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEee-CC-CeEEecCCCCEEEEEECCCCCeeccccCccc---
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE--- 102 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~~-d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~--- 102 (161)
+.++.++.||.|+.+|..+|++++++..+. .... .... |+ .+|+.+.+++.++.+|..+|+. .+.+..+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMV-PMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCC-EEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccc-eEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCccc
Confidence 468889999999999999999999998766 3332 3333 44 3567776778999999999988 55554432
Q ss_pred --ceecceeEeeCC-eEEEEe------------eCCEEEEEECCCCcEEEEecCCCC
Q 031361 103 --FMRRMPHVWDDG-ALLLGH------------EKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 103 --~V~ssP~v~~dg-~VyvGs------------~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
.-.....+..|+ .+|+++ .++.++.+|.++|+.++.+.....
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 136 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ 136 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC
Confidence 011233455445 688886 579999999999999999876443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.2e-07 Score=71.14 Aligned_cols=112 Identities=11% Similarity=0.112 Sum_probs=85.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC----eecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~----i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
.++.+|+++.||.|+.+|..+|+.+|++..+.. ......+. |+. +|+...+++.++.+|..+|+. ...+..++
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~ 273 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE 273 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-EEEEECSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC
Confidence 678899999999999999999999999987432 11112232 444 677776778999999999998 66666665
Q ss_pred ceecceeEeeCCe-EEEEe-eCCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWDDGA-LLLGH-EKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~dg~-VyvGs-~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
. ....+..|+. +|+.+ .++.++.+|.++|+++..+....
T Consensus 274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~ 314 (353)
T 3vgz_A 274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT 314 (353)
T ss_dssp C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC
Confidence 3 3345555554 88877 68999999999999999987654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-07 Score=73.48 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=82.8
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCC------CeecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccCc
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGK------PIYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~------~i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.++.+|+++ .++.|+.+|..++++.++++.+. ... ...+.++.+||... .++.++.+|..+|++ .+.+.+
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~ 170 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQYGKYVYVNCWSYQNRILKIDTETDKV-VDELTI 170 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEEETTEEEEEECTTCCEEEEEETTTTEE-EEEEEC
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEEECCEEEEEcCCCCCEEEEEECCCCeE-EEEEEc
Confidence 467999999 89999999999999999998765 222 22345667888765 366999999999988 565555
Q ss_pred ccceecceeEeeCCeEEEEeeC-----------CEEEEEECCCCcEEEEecC
Q 031361 101 GEFMRRMPHVWDDGALLLGHEK-----------TSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~VyvGs~d-----------~~lyalDa~TG~~~W~~~~ 141 (161)
+.... .-.+..||.+|+++.. +.++.+|++||+++.++..
T Consensus 171 g~~p~-~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 171 GIQPT-SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp SSCBC-CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcc-ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 43211 1123446889998864 6999999999999988765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-06 Score=68.22 Aligned_cols=109 Identities=10% Similarity=0.164 Sum_probs=80.3
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccceeccee
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
+++.++.||.|+..|..+|+.++.++....+.. .... ++. +++.+..++.++.+|..+|+. .+.+..+..+.+ ..
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~v~~-~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGSSPQG-VA 80 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEE-EEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSEEE-EE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCcce-EEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCCCccc-eE
Confidence 456778899999999999999999987776543 3333 454 456665677999999999998 666666664433 22
Q ss_pred EeeCC-eEEE-EeeCCEEEEEECCCCcEEEEecCCC
Q 031361 110 VWDDG-ALLL-GHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 110 v~~dg-~Vyv-Gs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+..|+ .+|+ ++.++.++.+|.++|+.++.+....
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 116 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK 116 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC
Confidence 33334 4665 4567999999999999999887543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.40 E-value=8.1e-06 Score=63.70 Aligned_cols=112 Identities=10% Similarity=-0.046 Sum_probs=82.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+..+++++.||.|+..|.++++.+.+++...++.+-....++..++-+..++.++.+|..+++.... ..-...|.+ .
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~v~~-~ 271 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLS-L 271 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEE-E
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE-cCCccceeE-E
Confidence 56789999999999999999999999998877776533333566666666777999999998877322 222222322 2
Q ss_pred eEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 109 HVW-DDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 109 ~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
... +...++.|+.|+.++..|..+|+.+......
T Consensus 272 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 306 (337)
T 1gxr_A 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES 306 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred EECCCCCEEEEecCCCcEEEEECCCCeEEEEecCC
Confidence 233 3345788999999999999999999776543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-06 Score=65.33 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=77.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
++.++.++.||.|+..|.++|+++.+++.. +++.+ .... ++. ++-+..||.++.+|..+|+. ...+.....-..+
T Consensus 195 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~-l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~ 271 (313)
T 3odt_A 195 DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC-IKLLPNGD-IVSCGEDRTVRIWSKENGSL-KQVITLPAISIWS 271 (313)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE-EEECTTSC-EEEEETTSEEEEECTTTCCE-EEEEECSSSCEEE
T ss_pred CCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEE-EEEecCCC-EEEEecCCEEEEEECCCCce-eEEEeccCceEEE
Confidence 455999999999999999999999999854 34443 3333 444 44555677999999999988 5555544322222
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
-....++.+++|+.|+.++..|..+++.+.......
T Consensus 272 ~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~~~~~ 307 (313)
T 3odt_A 272 VDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDEIKG 307 (313)
T ss_dssp EEECTTSCEEEEETTSCEEEEESCGGGCCC------
T ss_pred EEEccCCCEEEEeCCCcEEEEeCCCCceeehhhhhh
Confidence 333445778899999999999999998877665544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.3e-06 Score=67.14 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=82.1
Q ss_pred CCCEEE-EEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLAL-VATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~-vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..+| .++.||.|+.+|..+|+.++++..+..+..-....++. +++.+.+++.++.+|..+|+. ...+..+..+ .
T Consensus 42 dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~-~ 119 (391)
T 1l0q_A 42 DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKTGKSP-L 119 (391)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECSSSE-E
T ss_pred CCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeCCCCc-c
Confidence 445564 55689999999999999999999887665432223454 556666778999999999988 5555555444 2
Q ss_pred ceeEeeCC-eE-EEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPHVWDDG-AL-LLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~v~~dg-~V-yvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+..+..|+ .+ +.++.++.++.+|.++|+.++.+....
T Consensus 120 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 158 (391)
T 1l0q_A 120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR 158 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC
Confidence 33444344 36 467789999999999999999887643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-05 Score=66.38 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=78.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.++.+++|+.||.|+..|..+++.+.+++.......+... ++..++-+..|+.++.+|..+|+. ...+........+-
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~ 325 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGM 325 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCE-EEEEcCCcccEEEE
Confidence 5677788888888888888888888888643322222233 555555555677999999999988 55555443322222
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
... ++.++.|+.|+.++..|..+|+.+..+...
T Consensus 326 ~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 358 (445)
T 2ovr_B 326 ELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGP 358 (445)
T ss_dssp EEE-TTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred EEe-CCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence 233 477889999999999999999999998753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-05 Score=65.74 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=80.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~s 106 (161)
.++.++.|+.||.|+..|..+|+.+++++... +|.+ .... ++.++-++.||.++..|..+|+. ...+.... .|.+
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-~~~~-~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~ 204 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMR-DNIIISGSTDRTLKVWNAETGEC-IHTLYGHTSTVRC 204 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEE-EEEE-TTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEE
T ss_pred cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEE-EEec-CCEEEEEeCCCeEEEEECCcCcE-EEEECCCCCcEEE
Confidence 57889999999999999999999999997543 3432 3333 45555556677999999999987 55554433 2332
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
-... ++.++.|+.|++++..|..+|+.++.+..
T Consensus 205 -~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 237 (445)
T 2ovr_B 205 -MHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMG 237 (445)
T ss_dssp -EEEE-TTEEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred -EEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence 2223 47788999999999999999999998864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-05 Score=65.57 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=80.8
Q ss_pred CCCEEEEEe--------cCCeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccC
Q 031361 29 SGDLALVAT--------LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 29 ~~~~V~vgs--------~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~ 99 (161)
.+..+++++ .||.|+.+|..+|++++.+.....+.......++ .+|+-+..++.++.+|..+|+. ...+.
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~~ 342 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSIP 342 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEec
Confidence 456888888 4999999999999999988655444332112244 3566667788999999999988 55555
Q ss_pred cccceecceeEeeCC-eEEEEee---------------CCEEEEEECCCCcEEEEecCCC
Q 031361 100 VGEFMRRMPHVWDDG-ALLLGHE---------------KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg-~VyvGs~---------------d~~lyalDa~TG~~~W~~~~~~ 143 (161)
....+. +..+..|+ .+|+++. |+.++.+|.++|+.+..+....
T Consensus 343 ~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~ 401 (433)
T 3bws_A 343 VFDKPN-TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN 401 (433)
T ss_dssp CSSSEE-EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS
T ss_pred CCCCCC-eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC
Confidence 444433 23344344 5888876 5699999999999999987643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-05 Score=62.82 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=83.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.++.+++++.||.|+..|..+++++.++.... ++..-....++..++-+..++.++.+|..+++. ...+.....-..+
T Consensus 216 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVS 294 (425)
T ss_dssp ETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEE
T ss_pred CCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEE
Confidence 36889999999999999999999999997543 444322223556666666788999999998877 5555433222233
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
-....++.++.|+.|+.++..|..+|+.+..+...
T Consensus 295 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 295 ASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp EEEETTTEEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCEEEEEeCCCcEEEEECCCCcEeEecccC
Confidence 33444567889999999999999999999998753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-05 Score=64.33 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=79.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..++.++.||.|+..|.++|+.++++............. ++. +|+.+..++.++.+|..+|+. ...+..+..+.+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~ 258 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDKIGLPRG 258 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCCCSEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecCCCCceE
Confidence 34566677889999999999999999998544333333443 343 556666788999999999988 666665544332
Q ss_pred ceeEeeC-CeEEEEe--------eCCEEEEEECCCCcEEEEec
Q 031361 107 MPHVWDD-GALLLGH--------EKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~d-g~VyvGs--------~d~~lyalDa~TG~~~W~~~ 140 (161)
..+..| ..+++++ .|+.++..|..+|++++...
T Consensus 259 -~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~ 300 (433)
T 3bws_A 259 -LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG 300 (433)
T ss_dssp -EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred -EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence 223323 4688888 48899999999999988774
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-05 Score=63.44 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=81.1
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEec-------CCCeecceEeeCCCeEEecCCC---CEEEEEECCCCCeeccccCc-
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSM-------GKPIYSSFTRNDPDFYVDVGED---WKLYFHRKGIGKMKKPSIDV- 100 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t-------~~~i~ssp~~~d~~~~V~~~dd---g~Lyald~~tG~~~~w~~~~- 100 (161)
.+++++.||.|+..|.++++++++++. ..++.+-....++..++-+..+ +.++.+|..+++. ...+..
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~ 277 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVP 277 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-cceeccC
Confidence 999999999999999999999999987 5666543223356666655566 7999999999987 555543
Q ss_pred ------------c-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 101 ------------G-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 101 ------------~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
. ..|.+-=...++..++.|+.|+.++..|..+|+.+.++.
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred cccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 2 223221111233567889999999999999999999998
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-05 Score=61.85 Aligned_cols=110 Identities=11% Similarity=0.155 Sum_probs=75.2
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCC------CeecceEee-CCC-eEEecC-----------CCCEEEEEEC
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGK------PIYSSFTRN-DPD-FYVDVG-----------EDWKLYFHRK 88 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~------~i~ssp~~~-d~~-~~V~~~-----------ddg~Lyald~ 88 (161)
.+..+|+++ .++.|+.+|..+|++++++..+. .+. ..... |+. +|+... .++.++.+|.
T Consensus 44 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~ 122 (337)
T 1pby_B 44 GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122 (337)
T ss_dssp TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET
T ss_pred CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEecccccccccccccCceEEEEEC
Confidence 344666654 57899999999999999998654 222 22332 443 444420 3579999999
Q ss_pred CCCCeeccccCcccceecceeEeeCCe-EEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 89 GIGKMKKPSIDVGEFMRRMPHVWDDGA-LLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 89 ~tG~~~~w~~~~~~~V~ssP~v~~dg~-VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.+|+. .+.+..+..+. ...+..|+. +|++ ++.++.+|.++|+++..+....
T Consensus 123 ~~~~~-~~~~~~~~~~~-~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 123 ETLSR-RKAFEAPRQIT-MLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp TTTEE-EEEEECCSSCC-CEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred CCCcE-EEEEeCCCCcc-eeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 99988 56665554333 333444454 7887 6889999999999998887654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-05 Score=63.96 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+..++.|+.||.|+..|..+|+++.+++........... ++..++-+..||.++..|..+++. .+.......+...-
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~ 398 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL-SDKFLVSAAADGSIRGWDANDYSR-KFSYHHTNLSAITT 398 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSEEEEEETTTCCE-EEEEECTTCCCEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE-cCCEEEEEeCCCcEEEEECCCCce-eeeecCCCCccEEE
Confidence 5678999999999999999999999999765433333333 455666666788999999999887 55554443333333
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+..++..+..|+ |+.++..|.++|+++.++..
T Consensus 399 ~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~ 430 (464)
T 3v7d_B 399 FYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL 430 (464)
T ss_dssp EEECSSEEEEEE-TTEEEEEETTTCCEEESCTT
T ss_pred EEeCCCEEEEec-CCeEEEEECCCCcEEehhhc
Confidence 333324344555 99999999999999987443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.3e-05 Score=61.11 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=79.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..+++++.||.|+..|.+++++..+++.. .++.. .... ++..++-+..++.++.+|..+++. ...+.....+.+
T Consensus 152 ~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~v~~ 229 (337)
T 1gxr_A 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC-IDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQIFS 229 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEE-EEECCCCCEEEEEecCCcEEEEECCCCce-EeeecCCCceEE
Confidence 5678999999999999999999999999753 34443 2332 556666666788999999999987 555554444433
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
--...+...+++|+.++.++..|..+++....
T Consensus 230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 22222335678899999999999999987543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.2e-05 Score=63.51 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=84.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.++.+++|+.||.|+..|..+++.+.++... .++.+-....++..++-+..|+.++.+|..+|+. ...+..+.....+
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGL 357 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCCCcEEE
Confidence 4688999999999999999999999999753 3444332233556666666788999999999988 5555544332233
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
-... +..++.|+.|++++..|..+++..+.+...
T Consensus 358 ~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 391 (464)
T 3v7d_B 358 LRLS-DKFLVSAAADGSIRGWDANDYSRKFSYHHT 391 (464)
T ss_dssp EEEC-SSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred EEEc-CCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence 2333 477889999999999999999999888643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.4e-05 Score=59.02 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=80.3
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEec--CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ce
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM--GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FM 104 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t--~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V 104 (161)
..++.+++++.||.|+..| .++..-++.. ..++..-....++. ++-+..++.++.+|..+++. ...+.... .|
T Consensus 153 ~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i 228 (313)
T 3odt_A 153 FSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-LRTYEGHESFV 228 (313)
T ss_dssp TTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE-EEEEECCSSCE
T ss_pred CCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh-hhhhhcCCceE
Confidence 4688999999999999999 5677777764 33444332333555 55555677999999999988 55554332 23
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.+ -....++.++.|+.|+.++..|.++|+.+..+....
T Consensus 229 ~~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 229 YC-IKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EE-EEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EE-EEEecCCCEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 32 233445679999999999999999999999987654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-05 Score=61.74 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=72.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC--CeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccc--
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF-- 103 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~-- 103 (161)
+..++.++.|+.|+.+|..+|+.+++++.+. .... ..+. |+. +|+....++.++.+|..+|+. .+.+.....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~~~~~~~ 88 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGT-AMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANLSSVPG 88 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCE-EEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEESCCSTT
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCce-eEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEEcccccc
Confidence 3345556789999999999999999998765 3322 2333 444 566666678999999999988 555544321
Q ss_pred ----eecceeEeeCC-eEEEEeeC------------CEEEEEECCCCcE
Q 031361 104 ----MRRMPHVWDDG-ALLLGHEK------------TSVFFVDAKSGGM 135 (161)
Q Consensus 104 ----V~ssP~v~~dg-~VyvGs~d------------~~lyalDa~TG~~ 135 (161)
-.....+..|| .+|+++.+ +.++.+|.++|+.
T Consensus 89 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 89 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 12233444444 58888865 8999999999654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.15 E-value=7.8e-05 Score=61.63 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=82.1
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcc---cc
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVG---EF 103 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~---~~ 103 (161)
.++.+|+.+- ++.++.+|++|++++=+|+.+. .+-....|+ .+|+-.+ ...|+.+|+.|.++ .-..++. ++
T Consensus 95 ~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v-~~~I~V~~~g~~ 170 (262)
T 3nol_A 95 WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTP-VRTITVTAHGEE 170 (262)
T ss_dssp ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCCEEECSSCEEECCS-SSEEEEECTTTCSE-EEEEECEETTEE
T ss_pred eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC--CceEEecCCCEEEEECC-CCeEEEEcCCCCeE-EEEEEeccCCcc
Confidence 5789999985 8899999999999999999854 222233455 4555543 55899999999988 5555553 12
Q ss_pred eecc-eeEeeCCeEEEEee-CCEEEEEECCCCcEEEEecCCCCCC
Q 031361 104 MRRM-PHVWDDGALLLGHE-KTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 104 V~ss-P~v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+..- -+-..||.+|+..+ +..++.||++||+++-+.+..+-.+
T Consensus 171 ~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~ 215 (262)
T 3nol_A 171 LPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILA 215 (262)
T ss_dssp CCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGG
T ss_pred ccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcc
Confidence 2110 01222589999985 7799999999999999998865443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00012 Score=59.19 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=82.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
....+..++.||+|+..|..+|+.+.+++....-..+... .++..++-+..++.++.++..+|+. ...+........+
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILS 169 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEE
Confidence 4567889999999999999999999999865532222333 3556677777788999999999988 5555443322222
Q ss_pred eeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 108 PHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 108 P~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
-....| ..+..|+.|+.++..|.++|+.+.++...
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h 205 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc
Confidence 333333 45778999999999999999999988753
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.3e-05 Score=61.54 Aligned_cols=111 Identities=13% Similarity=0.043 Sum_probs=84.1
Q ss_pred CEEEEEec---CCeEEEEeCCCCceeEEEecCCCeec-ceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 31 DLALVATL---NGTVHLVDTKRGESRWSFSMGKPIYS-SFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 31 ~~V~vgs~---DG~lyAvd~~tG~~~W~f~t~~~i~s-sp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
+.+|+++. ++.|+.+|..||+++=++..+..... ..+..++.+|+-...++.++.+|+.|+++ .-.+..++. +.
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v-~~~i~~g~~-~g 109 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN-IKNFTHQMK-DG 109 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE-EEEEECCSS-SC
T ss_pred CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE-EEEEECCCC-Ce
Confidence 79999985 58999999999999999987653332 23334567888887888999999999988 445655411 12
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.-+..+++.+|+...+++++.||++|.+++.+...+.
T Consensus 110 ~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 110 WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC
Confidence 2233344779998888999999999999999887653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.9e-05 Score=60.51 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=81.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccce--
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM-- 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V-- 104 (161)
.+..+++|+.||.|+..| .+|+.+.++.... ++.. ... .++..++-+..++.++.+|..+|+. ...+.....-
T Consensus 119 ~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~ 195 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVS-VKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGS 195 (425)
T ss_dssp TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEE-EEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC-----
T ss_pred CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEE-EEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCcc
Confidence 577899999999999999 7899999997544 4443 333 3556666666778999999999987 5555554432
Q ss_pred -------------ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 105 -------------RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 105 -------------~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
..+-....++.+++|+.++.++..|..+++.+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 245 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG 245 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc
Confidence 2233334458899999999999999999999888764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00016 Score=56.75 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=83.3
Q ss_pred CCCEEEEEecCCeEEEEeCCC-CceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKR-GESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~t-G~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..+++++.||.|+..|..+ ++++.++.... ++.+-....++..++.+..|+.++.+|..+++. ...+.....+..
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~ 264 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV-LKKYETDCPLNT 264 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSCEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce-eeeecCCCCcee
Confidence 466899999999999999999 88888887543 444322223566666666788999999999988 665655544444
Q ss_pred ceeEeeCCeEEEEeeCC--------------EEEEEECCCCcEEEEecCC
Q 031361 107 MPHVWDDGALLLGHEKT--------------SVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~--------------~lyalDa~TG~~~W~~~~~ 142 (161)
.-...++..+++|+.++ .++..|..+|+.+..+...
T Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp EEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 33333335577888887 8999999999999888654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.09 E-value=6.4e-05 Score=61.14 Aligned_cols=114 Identities=10% Similarity=0.001 Sum_probs=82.8
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
..+..+.+|+.||.|+..|..+++.+..++. .++|..-.-..++..++-+..|+.++.+|..+|+. ...+.....-..
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 185 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVT 185 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEE
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEE
Confidence 4678899999999999999999999888743 34444322223556666666788999999999987 444443322222
Q ss_pred ceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 107 MPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+.... +...++.|+.|+.++..|.++|+.++.+...
T Consensus 186 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred EEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 23333 3345788999999999999999999999753
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.4e-05 Score=61.75 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=86.4
Q ss_pred CCCEEEEEecC-C--eEEEEeCCCCceeEEEecCCCeecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLN-G--TVHLVDTKRGESRWSFSMGKPIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~D-G--~lyAvd~~tG~~~W~f~t~~~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.++.+|+++-+ | .|+.+|.+||+++=+...+....+- .+..++.+|+-...++.++.+|++|+++ .-.++.+.
T Consensus 51 ~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~-~~ti~~~~-- 127 (262)
T 3nol_A 51 RNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ-VRSFNYDG-- 127 (262)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE-EEEEECSS--
T ss_pred ECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE-EEEEECCC--
Confidence 57899999865 4 9999999999999999887654432 2344567888877788999999999998 55555542
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+.--+..+++.+|+...++.++.+|++|.+++-+....
T Consensus 128 eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 128 EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence 44444555567888877889999999999999887764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00015 Score=58.64 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+..++.|+.||.++..|..+|+..+++........+.... ++..++-+..|+.++.+|..+|+. ...++....-..+
T Consensus 133 dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~ 211 (321)
T 3ow8_A 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRS 211 (321)
T ss_dssp TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCCCE
T ss_pred CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcccCCceeE
Confidence 56789999999999999999999999998765433333333 556666666788999999999987 4444433221222
Q ss_pred eeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 108 PHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 108 P~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
-....| ..++.|+.|+.++.-|..+++...++..
T Consensus 212 l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 233323 4577899999999999999999887764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00022 Score=56.14 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~s 106 (161)
.+..++.|+.||.|+..|..+++.+-+++... ++.......++..++-+..|+.++.+|..+++. ...+.... .|.+
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~ 154 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSA 154 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEE
Confidence 56789999999999999999999999887544 343322223556666666788999999999987 44444332 2322
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
--...+...++.|+.|+.++..|..+|+.+..+..
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 189 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec
Confidence 21112324577899999999999999999887754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00022 Score=56.08 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=81.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcc-ccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ 105 (161)
.+..++.|+.||.|+..|..+|+..-++.... ++.. ... .++..++-+..|+.+...|..+++. ...+... +.|.
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~ 111 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD-VAWSSDSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVF 111 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEE
T ss_pred CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEE-EEEcCCCCEEEEECCCCEEEEEECCCCcE-EEEEcCCCCCEE
Confidence 56789999999999999999999998886443 3433 232 3566777777888999999999987 3334332 2333
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+.-...+...++.|+.|+.++..|.++|+.+..+...
T Consensus 112 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 3222223356788999999999999999999888653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.05 E-value=9.8e-05 Score=61.31 Aligned_cols=111 Identities=10% Similarity=0.082 Sum_probs=85.1
Q ss_pred CCCEEEEEecC-CeEEEEeCCCCceeEEEecCCCeecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLN-GTVHLVDTKRGESRWSFSMGKPIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~D-G~lyAvd~~tG~~~W~f~t~~~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.+|+++-+ |.|+.+|.+||+++-+. .+....+- .+..++.+|+-...++.++.+|++|+++ .-.++... +.
T Consensus 63 ~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~-~~ti~~~~--eG 138 (268)
T 3nok_A 63 HQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-ERTTRYSG--EG 138 (268)
T ss_dssp ETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE-EEEEECSS--CC
T ss_pred ECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE-EEEEeCCC--ce
Confidence 57899988866 78999999999999999 76654432 2344567888877788999999999998 54555431 23
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.-+..+++.+|+...++.++.+|++|++++.+.....
T Consensus 139 wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 139 WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 3334555778998889999999999999999887654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=6e-05 Score=60.28 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=83.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEe--------------cCCCeecceEee-CCCeEEecCCCCEEEEEECCCC
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFS--------------MGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~--------------t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG 91 (161)
|..+..++.|+.||.|+..|..+++....+. ...+|..-.-.. ++..++-+..|+.++..|..++
T Consensus 53 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 132 (408)
T 4a11_B 53 PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132 (408)
T ss_dssp TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT
T ss_pred cCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC
Confidence 3367899999999999999999999988876 233443322122 3456666667889999999999
Q ss_pred CeeccccCcccceecceeE---eeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 92 KMKKPSIDVGEFMRRMPHV---WDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 92 ~~~~w~~~~~~~V~ssP~v---~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+. ...+...+.+.+.... .+...+++|+.++.++..|..+|+.+..+...
T Consensus 133 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 133 QT-ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp EE-EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred cc-ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence 87 5555555544433332 23236889999999999999999999888743
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00026 Score=55.35 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=83.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
...++.++.|+.|+..|..+++++-++... ++|.+ ..+ .++..++-+..|+.++..|..+++. ...+...+.|.+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~v~~~ 262 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT-VTVSPDGSLCASGGKDGQAMLWDLNEGKH-LYTLDGGDIINAL 262 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-EEECTTSSEEEEEETTCEEEEEETTTTEE-EEEEECSSCEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEE-EEECCCCCEEEEEeCCCeEEEEEeccCce-eeeecCCceEEee
Confidence 456778999999999999999999988643 34443 233 3556666666788999999999888 5556656555443
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
-. ..++.++.++.|+.++..|.+++..++++......
T Consensus 263 ~~-~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 299 (340)
T 4aow_A 263 CF-SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS 299 (340)
T ss_dssp EE-CSSSSEEEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred ec-CCCCceeeccCCCEEEEEECCCCeEEEecccccee
Confidence 33 33577889999999999999999999998765433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.8e-05 Score=62.15 Aligned_cols=115 Identities=10% Similarity=-0.050 Sum_probs=83.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec---CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc--Ccccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM---GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI--DVGEF 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t---~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~--~~~~~ 103 (161)
.+..++.|+.||.|+..|.++++++++++. .++|.+-....++..++-+..||.++.+|.++++. ...+ .-...
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 259 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL-IRSWSFGDHAP 259 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-EEEEBCTTCEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE-EEEEecCCCCc
Confidence 477899999999999999999999999986 24454422223556666666788999999999877 3333 22223
Q ss_pred eec---ceeEeeCC-eEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 104 MRR---MPHVWDDG-ALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 104 V~s---sP~v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
|.+ +|....|+ .++.|+.|+.++..|..+|+.+..+.....
T Consensus 260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 332 33333334 577899999999999999999999886543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=8.8e-05 Score=61.72 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=77.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-cee
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMR 105 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ 105 (161)
..++.++.|+.||.|+..|..+|+.++++.... +|. +... ++..++-+..||.++..|..+|+. ...+.... .|.
T Consensus 141 ~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~-~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~ 217 (435)
T 1p22_A 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY-DERVIITGSSDSTVRVWDVNTGEM-LNTLIHHCEAVL 217 (435)
T ss_dssp CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC-CSSEEEEEETTSCEEEEESSSCCE-EEEECCCCSCEE
T ss_pred ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE-CCCEEEEEcCCCeEEEEECCCCcE-EEEEcCCCCcEE
Confidence 367899999999999999999999999997543 343 2233 666666666788999999999988 54444332 222
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
+ -... ++.++.|+.|+.++..|..+++..
T Consensus 218 ~-l~~~-~~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 218 H-LRFN-NGMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp E-EECC-TTEEEEEETTSCEEEEECSSSSCC
T ss_pred E-EEEc-CCEEEEeeCCCcEEEEeCCCCCCc
Confidence 2 2223 477899999999999999998865
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.01 E-value=6.2e-05 Score=60.60 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=74.1
Q ss_pred CCCEEEEEecC---CeEEEEeCCCCceeEEEec--------------CCCeecceEeeCCCeEEecCCCCEEEEEECCCC
Q 031361 29 SGDLALVATLN---GTVHLVDTKRGESRWSFSM--------------GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 29 ~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t--------------~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG 91 (161)
.+..+++++.| |.|+..|..+++++.+++. ..++.+-....++..++-+..|+.++.+|..++
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 57889999999 9999999999999999975 334443222235566666667889999999999
Q ss_pred CeeccccC------c----------------ccceecceeEeeCC-----------eEEEEeeCCEEEEEECCCCc
Q 031361 92 KMKKPSID------V----------------GEFMRRMPHVWDDG-----------ALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 92 ~~~~w~~~------~----------------~~~V~ssP~v~~dg-----------~VyvGs~d~~lyalDa~TG~ 134 (161)
+. ...+. . ...|. +-....++ .++.|+.|+.++..|.++|+
T Consensus 324 ~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~-~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 324 ER-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EE-EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE-EEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ce-eEEEecccCcccchhhhhccccccccccCCcee-EEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 87 55554 2 22232 22334454 68889999999999988885
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00021 Score=56.25 Aligned_cols=113 Identities=11% Similarity=-0.021 Sum_probs=77.1
Q ss_pred CCEEE-EEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 30 GDLAL-VATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 30 ~~~V~-vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+.+| ..+.++.|+.+|..+|+.+.++..+..-. ...+. |+. +|+....++.++.+|..+|++.......+.....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA 87 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc
Confidence 45555 45678999999999999999988654333 33443 454 6776666779999999999862233333333333
Q ss_pred ceeEeeCCe-EEEEeeCC---EEEEEECCCCcEEEEecCCC
Q 031361 107 MPHVWDDGA-LLLGHEKT---SVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~v~~dg~-VyvGs~d~---~lyalDa~TG~~~W~~~~~~ 143 (161)
...+..|+. +|++..++ .++.+|.++|+.+..+....
T Consensus 88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 128 (331)
T 3u4y_A 88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY 128 (331)
T ss_dssp CEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT
T ss_pred ceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC
Confidence 355554554 66555553 89999999999998877644
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00021 Score=59.40 Aligned_cols=110 Identities=8% Similarity=0.045 Sum_probs=78.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecc--ccCc-cccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKP--SIDV-GEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w--~~~~-~~~V~ 105 (161)
.++.++.|+.||.|+..|..+|+.+.++.....-..+... +++.++-++.||.++..|..+++.... .+.. ...|.
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE-cCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 6789999999999999999999999999754432222333 345555566778999999888875211 1111 12233
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+-.. ++..++.|+.|+.++..|..+|+.+.++..
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 294 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC
Confidence 2222 447788999999999999999999998874
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00022 Score=58.20 Aligned_cols=112 Identities=10% Similarity=0.012 Sum_probs=87.1
Q ss_pred CCCEEEEEecC---CeEEEEeCCCCceeEEEecCCCeecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.++.+|+++-+ ..|+.+|.+||+++=+.+.+....+- .+..++.+|+-...++.++.+|++|+++ .-.++.+.
T Consensus 29 ~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~-~~ti~~~~-- 105 (243)
T 3mbr_X 29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP-RARFRYPG-- 105 (243)
T ss_dssp ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE-EEEEECSS--
T ss_pred ECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE-EEEEeCCC--
Confidence 57899999877 49999999999999998877654432 2344667888777788999999999998 55555442
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+.--+..+++.+|+...+++++.+|++|.+++.+.....
T Consensus 106 ~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 106 EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc
Confidence 333334555779999889999999999999999887754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00012 Score=62.07 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=82.7
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEE-----ecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc---
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSF-----SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG--- 101 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f-----~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~--- 101 (161)
+..+++++.||.|+..|..+|+.+.++ ....+|.+-... ++..++-+..|+.++.+|..+|+. ...+...
T Consensus 219 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~ 296 (615)
T 1pgu_A 219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQ 296 (615)
T ss_dssp CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-EEEEECCTTC
T ss_pred CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCc
Confidence 678999999999999999999999999 344555543223 666777666788999999999987 5555444
Q ss_pred --cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 102 --EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 --~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
..+.+ -...++..++.|+.++.++..|..+|+.+..+..
T Consensus 297 ~~~~~~~-~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 297 LGNQQVG-VVATGNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp GGGCEEE-EEEEETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred ccCceeE-EEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 12221 1122557789999999999999999999998865
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00014 Score=57.10 Aligned_cols=61 Identities=8% Similarity=-0.069 Sum_probs=44.9
Q ss_pred CCEEEEEECCCCCeeccccCcccceecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 80 DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 80 dg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
++.++.+|..+|+. ...+..+..+. ...+..| ..+|+++.++.++.+|.++|+++.++...
T Consensus 274 ~~~v~~~d~~~~~~-~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 274 LNRLAKYDLKQRKL-IKAANLDHTYY-CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ESEEEEEETTTTEE-EEEEECSSCCC-EEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred cCeEEEEECccCeE-EEEEcCCCCcc-ceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 55888899999887 44444443332 2334434 46899999999999999999999998765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00016 Score=58.74 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=80.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc----c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE----F 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~----~ 103 (161)
.+..++.|+.||.|+..|..+|+...+++.. .+|.+-....++..++-+..|+.++..|..+|+. ...+.... .
T Consensus 150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~ 228 (420)
T 3vl1_A 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDG 228 (420)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCC
Confidence 5678999999999999999999999999743 3444322233566666666788999999999987 55554321 1
Q ss_pred eecce--------------------eEeeCC-eEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 104 MRRMP--------------------HVWDDG-ALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 104 V~ssP--------------------~v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
|.+.. ....++ .++.|+.|+.++..|.++++...++..
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 11111 111223 577899999999999999999988865
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00016 Score=56.78 Aligned_cols=113 Identities=8% Similarity=0.053 Sum_probs=78.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCC-----CEEEEEECCCCCeeccccCcc--
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED-----WKLYFHRKGIGKMKKPSIDVG-- 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~dd-----g~Lyald~~tG~~~~w~~~~~-- 101 (161)
.+..++.++.||.|+..|..+|+.+.++....++..-....++..++.+.++ +.++.+|..++.. ...+...
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~-~~~~~~~~~ 163 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA-THELTKVSE 163 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT-TCCEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc-ceeeccccc
Confidence 5678999999999999999999999999977777654333456666666555 7888888766543 1111110
Q ss_pred c------------ceecceeEeeCCeEEEEeeCCEEEEEECCC-CcEEEEecCC
Q 031361 102 E------------FMRRMPHVWDDGALLLGHEKTSVFFVDAKS-GGMICSHESD 142 (161)
Q Consensus 102 ~------------~V~ssP~v~~dg~VyvGs~d~~lyalDa~T-G~~~W~~~~~ 142 (161)
+ .+.+.-...+...+++|+.|+.++..|..+ ++.+..+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 217 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH 217 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC
Confidence 0 111111112224688899999999999999 7888887753
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=7.3e-05 Score=58.88 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=77.3
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeecccc----Ccccc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSI----DVGEF 103 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~----~~~~~ 103 (161)
+..+++|+.||.|+..|..+|+++.+++. ..+|..-.-.. ++..++-+..||.++.+|..+++. ...+ .-...
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~ 163 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDE 163 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSC
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCc
Confidence 45899999999999999999999999984 44455422222 456666666788999999999987 4433 22233
Q ss_pred eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 104 MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
|.+--...+...++.|+.|+.++..|..+++....+
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence 333222223356788999999999999998765443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00022 Score=59.20 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=79.4
Q ss_pred CCCCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 28 ESGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 28 ~~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
+.++.+|+.+ .++.++.+|++|++++=+|+.++.-. -...|+ .+|+-.+ ++.|+.+|+.|.++ .-+.++.. .
T Consensus 103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw--GLt~Dg~~L~vSdG-s~~l~~iDp~T~~v-~~~I~V~~--~ 176 (268)
T 3nok_A 103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW--GLCYWNGKLVRSDG-GTMLTFHEPDGFAL-VGAVQVKL--R 176 (268)
T ss_dssp ECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC--CEEEETTEEEEECS-SSEEEEECTTTCCE-EEEEECEE--T
T ss_pred EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee--EEecCCCEEEEECC-CCEEEEEcCCCCeE-EEEEEeCC--C
Confidence 3678899886 47899999999999999998754311 122344 4566544 56999999999988 55555543 1
Q ss_pred ccee------EeeCCeEEEEee-CCEEEEEECCCCcEEEEecCC
Q 031361 106 RMPH------VWDDGALLLGHE-KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 106 ssP~------v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~ 142 (161)
..|+ -..||.+|+..+ +..++.||++||+++-+++..
T Consensus 177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 2221 122589999985 779999999999999888875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00033 Score=57.64 Aligned_cols=109 Identities=11% Similarity=-0.055 Sum_probs=79.5
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.+|+.+. ++.+..+|..|++++-+++.+.+ .+.-...|+ .+|+-. .++.|+.+|+.|.++ .-...+++. .
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~-~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v-~~~I~Vg~~--~ 148 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK-DGWGLATDGKILYGSD-GTSILYEIDPHTFKL-IKKHNVKYN--G 148 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSS-SCCEEEECSSSEEEEC-SSSEEEEECTTTCCE-EEEEECEET--T
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCC-CeEEEEECCCEEEEEC-CCCeEEEEECCCCcE-EEEEEECCC--C
Confidence 4689998885 67999999999999999988711 122233354 577755 466999999999988 555655531 1
Q ss_pred cee------EeeCCeEEEEee-CCEEEEEECCCCcEEEEecCC
Q 031361 107 MPH------VWDDGALLLGHE-KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~------v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~ 142 (161)
.|+ ...|+.+|+..+ ++.+..||++||+++-++...
T Consensus 149 ~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 149 HRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred cccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence 121 111588998885 689999999999999988864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00026 Score=57.98 Aligned_cols=109 Identities=12% Similarity=0.175 Sum_probs=77.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCC-------ceeEEEecCC-CeecceEee-CC-CeEEecCCCCEEEEEECCCCCeecccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRG-------ESRWSFSMGK-PIYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG-------~~~W~f~t~~-~i~ssp~~~-d~-~~~V~~~ddg~Lyald~~tG~~~~w~~ 98 (161)
.+..++.|+.||.|+..|..++ +++.++.... +|.. .... ++ ..++-+..|+.++..|..+|+. ...+
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~ 170 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI-VAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTL 170 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEE-EEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEE
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEE-EEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEE
Confidence 6789999999999999999999 5666776433 3332 2332 33 4666666788999999999987 4444
Q ss_pred --Ccc-cceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 99 --DVG-EFMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 99 --~~~-~~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
... +.|.+ -... ++..++.|+.|+.++..|.++|+.+..+.
T Consensus 171 ~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 215 (402)
T 2aq5_A 171 GPDVHPDTIYS-VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD 215 (402)
T ss_dssp CTTTCCSCEEE-EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCCceEE-EEECCCCCEEEEEecCCcEEEEeCCCCceeeeec
Confidence 222 22322 2222 33568899999999999999999999983
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.9e-05 Score=58.32 Aligned_cols=107 Identities=9% Similarity=0.029 Sum_probs=74.3
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee---CCCeEEecCCCCEEEEEECCCCCeeccccC-----
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---DPDFYVDVGEDWKLYFHRKGIGKMKKPSID----- 99 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~---d~~~~V~~~ddg~Lyald~~tG~~~~w~~~----- 99 (161)
..+..+++++.||.|+..|.++++.++......++.+-.... ++..++-+..+|.++.+|..+++. ...+.
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~ 256 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP-TKGFASVSEK 256 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET-TTEEEEEEEE
T ss_pred CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc-ccceeeeccC
Confidence 357789999999999999999999999988777776533222 455665566777999999887765 33332
Q ss_pred cc-cceecceeEeeCC--eEEEEeeCCEEEEEECCCCcEE
Q 031361 100 VG-EFMRRMPHVWDDG--ALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 100 ~~-~~V~ssP~v~~dg--~VyvGs~d~~lyalDa~TG~~~ 136 (161)
.. ..|.+ -....++ .++.|+.|+.++..|..+++..
T Consensus 257 ~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 257 AHKSTVWQ-VRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp CCSSCEEE-EEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCcCCEEE-EEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 12 22222 2223334 4778999999999998876543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00017 Score=63.60 Aligned_cols=109 Identities=12% Similarity=0.004 Sum_probs=78.3
Q ss_pred CCEEE-EEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CC-CeEEecCCCCEEEEEEC--CCCCeeccccCcccce
Q 031361 30 GDLAL-VATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVGEDWKLYFHRK--GIGKMKKPSIDVGEFM 104 (161)
Q Consensus 30 ~~~V~-vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~-~~~V~~~ddg~Lyald~--~tG~~~~w~~~~~~~V 104 (161)
++.+| .++.||+|..+|..+|+++.+++++..++. ..+. |+ .+|+.+.+ +.++.+|. .+++. .-.+..+...
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~-v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~-~~~i~~g~~p 224 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHI-SRMSASGRYLLVIGRD-ARIDMIDLWAKEPTK-VAEIKIGIEA 224 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEE-EEECTTSCEEEEEETT-SEEEEEETTSSSCEE-EEEEECCSEE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccce-EEECCCCCEEEEECCC-CeEEEEECcCCCCcE-EEEEecCCCc
Confidence 34455 556789999999999999999998877553 2232 44 35666654 79999999 88877 4445544333
Q ss_pred ecceeEe-----eCCeEEEEe-eCCEEEEEECCCCcEEEEecCC
Q 031361 105 RRMPHVW-----DDGALLLGH-EKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 105 ~ssP~v~-----~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.+- +++ ++..+|+++ .++++..+|..|++++.++...
T Consensus 225 ~~v-a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 225 RSV-ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp EEE-EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred ceE-EeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 222 233 445689988 5899999999999999998764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00032 Score=56.64 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=80.9
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRM 107 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ss 107 (161)
++.++.++.||+|+..|..+|+++-+++... ++.+-....++..++-+..|+.+...|..+|+. ...+.... .|.+-
T Consensus 154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v 232 (340)
T 1got_B 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAI 232 (340)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEE
T ss_pred CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEE
Confidence 5678999999999999999999999886433 344322223556666666788999999999987 44444332 23322
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
-+.-++..++.|+.|+++...|.++++.+..+....
T Consensus 233 ~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 268 (340)
T 1got_B 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC
Confidence 111233557789999999999999999998886543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00037 Score=57.31 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=79.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ss 107 (161)
.+..+++|+.||.|+..|..+++.+.++.....-..+... ++..++-+..||.++.+|..++......+... +.|.+-
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 5678999999999999999999999999754432223333 45566666678899999988543323333322 223221
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
-...++..+++|+.|+.++..|.++++.+.++...
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 258 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH 258 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC
Confidence 11113356788999999999999999999988653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00025 Score=58.50 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+..++.|+.||.|+..|..+++.+-.++... +|.+-.-..++..++-++.|+.++..|..+|+. ...+...+.+.+.
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~v~~~ 212 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLSIEDGVTTV 212 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEEcCCCcEEE
Confidence 56788999999999999999999988886433 444322223566677777788999999999987 5555544444432
Q ss_pred eeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 108 PHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 108 P~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
-+.. +...+..|+.|+.++..|.++|+.+.++..
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~ 247 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc
Confidence 2222 324577899999999999999999888754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00032 Score=56.57 Aligned_cols=112 Identities=8% Similarity=-0.007 Sum_probs=79.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecC-------CCeecceEee-CC-CeEEecCCCC---EEEEEECCCCCeeccc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMG-------KPIYSSFTRN-DP-DFYVDVGEDW---KLYFHRKGIGKMKKPS 97 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-------~~i~ssp~~~-d~-~~~V~~~ddg---~Lyald~~tG~~~~w~ 97 (161)
+..++.++.||.|+..|.++++.+.+++.. .++.. .... ++ ..++-+.+++ .++.+|..+++.....
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~ 256 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV-VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT 256 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE-EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE-EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence 678999999999999999999999999874 33443 2332 33 4566666776 8999999887432444
Q ss_pred cC-cccceecceeEe--eCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 98 ID-VGEFMRRMPHVW--DDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 98 ~~-~~~~V~ssP~v~--~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+. ....-..+.... +...++.|+.|+.++..|.++|+.+.++...
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 43 222212222222 3356889999999999999999999988753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00046 Score=56.29 Aligned_cols=113 Identities=18% Similarity=0.120 Sum_probs=82.7
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.+|+.+ .++.++.+|++|++++=+|+.++. +--...|+ .+|+--+ ++.|+.+|+.|.++ .-+.++.. ..
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~--Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~-~~~I~V~~--~g 146 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE--GWALTSDDSHLYMSDG-TAVIRKLDPDTLQQ-VGSIKVTA--GG 146 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC--CCEEEECSSCEEEECS-SSEEEEECTTTCCE-EEEEECEE--TT
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC--ceEEeeCCCEEEEECC-CCeEEEEeCCCCeE-EEEEEEcc--CC
Confidence 578999886 578999999999999999998652 22223344 5677654 56999999999988 55555542 11
Q ss_pred cee------EeeCCeEEEEee-CCEEEEEECCCCcEEEEecCCCCCCC
Q 031361 107 MPH------VWDDGALLLGHE-KTSVFFVDAKSGGMICSHESDNSAST 147 (161)
Q Consensus 107 sP~------v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~~~~~~ 147 (161)
.|+ -..+|.+|+..+ +..+..||++||+++-..+..+-.++
T Consensus 147 ~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~ 194 (243)
T 3mbr_X 147 RPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD 194 (243)
T ss_dssp EECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT
T ss_pred cccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc
Confidence 221 122588999885 77999999999999999987755443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00036 Score=59.10 Aligned_cols=110 Identities=14% Similarity=0.075 Sum_probs=81.8
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCC----CeecceEeeC-CCeEEecCCCCEEEEEECCCCCeecccc-----Ccc
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGK----PIYSSFTRND-PDFYVDVGEDWKLYFHRKGIGKMKKPSI-----DVG 101 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~----~i~ssp~~~d-~~~~V~~~ddg~Lyald~~tG~~~~w~~-----~~~ 101 (161)
.++.++.||.|+..|..+++.+.+++... ++..-....+ +..++-+..++.++.+|..+|+. ...+ .-.
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~ 253 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQ 253 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCC
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE-eEEecccccccC
Confidence 89999999999999999999999997543 3443222235 56666566678999999999988 4444 223
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+.|.+--.. ++..++.++.|+.++..|..+|+.+.++....
T Consensus 254 ~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 254 GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 334332222 44567889999999999999999999988763
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00068 Score=53.82 Aligned_cols=114 Identities=7% Similarity=0.035 Sum_probs=80.8
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC--CeecceEe--eCCCeEEecCCCCEEEEEECCCCCeeccccCcc-c
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTR--NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-E 102 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~~--~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~ 102 (161)
..+..+..|+.||+|+..|..++++..++..+. ++...... .++..++-++.|+.+...|..+++. ...++.+ .
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~~~~h~~ 229 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMS 229 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE-EEEEECCSS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc-ceeeCCCCC
Confidence 356789999999999999999999998887654 22221111 1345666666788999999999877 4444333 2
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.|...-+.-+...++.|+.|+++..-|.++++.+.++...
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 3333222223345778999999999999999999998754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0005 Score=54.61 Aligned_cols=111 Identities=12% Similarity=0.165 Sum_probs=80.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~s 106 (161)
.+..++.|+.||+|+.-|..+|+.+.+++... ++.......++..++-+.+|+.+...|..+|+. ...++.+. .|.+
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~h~~~v~~ 102 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-VVDFEAHPDYIRS 102 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE-EEEEeCCCCcEEE
Confidence 57789999999999999999999999987543 455433344667777777888999999999987 54454432 3333
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEE-EEec
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMI-CSHE 140 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~-W~~~ 140 (161)
--+..++..++.|+.|+++..-|.+++... ..+.
T Consensus 103 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 103 IAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred EEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 222223356788999999999999988543 4444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00023 Score=63.00 Aligned_cols=113 Identities=7% Similarity=0.066 Sum_probs=82.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC--CeecceEee---CCCeEEecCCCCEEEEEECCCCCeeccccCcccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTRN---DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~~~---d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
.+..+++++.||.|+..|..+++..+++.... ++.. .... ++..++-+.++|.++.+|..+++. ...+.....
T Consensus 152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~ 229 (814)
T 3mkq_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMS 229 (814)
T ss_dssp EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCE-EEECCSTTCCEEEEECTTSEEEEEETTTTEE-EEEEECCSS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEE-EEEEECCCCCEEEEEeCCCEEEEEECCCCcE-EEEEcCCCC
Confidence 45689999999999999999999999998764 3332 2222 556666666788999999999887 444443322
Q ss_pred eecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 104 MRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 104 V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
-..+.....+ ..++.|+.|+.++..|..+|+.++.+....
T Consensus 230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 2222333333 457889999999999999999999987653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00047 Score=56.74 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=76.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcc--c-c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVG--E-F 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~--~-~ 103 (161)
.+..++.|+.||+|+..|..+|+++-++... ++|..-....++ ..++-++.|+.+...|.++|+. ...+... . .
T Consensus 138 dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~ 216 (344)
T 4gqb_B 138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYL 216 (344)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeeeecceeecc
Confidence 5678999999999999999999999999753 344432222233 4667777788999999999987 3333221 1 1
Q ss_pred eecceeEeeCC-eEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 104 MRRMPHVWDDG-ALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 104 V~ssP~v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+.+--...+++ .+..|+.|++++..|.++|+.+.++....
T Consensus 217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~ 257 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS 257 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS
T ss_pred ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC
Confidence 22211111234 35579999999999999999999887533
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00027 Score=58.20 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=79.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-----CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-E 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-----~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~ 102 (161)
-++.++.|+.||+|+.-|..+|+....++. .++|.+-....|+..++-++.|+.+...|..+|+. ...+..+ +
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~ 170 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAA 170 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSS
T ss_pred CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCcCC
Confidence 357899999999999999999998776542 23444322223667777777788999999999988 4445433 3
Q ss_pred ceecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.|.+.-+..++ ..+..|+.|++++.-|.++|+...++....
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 212 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence 34433222222 335679999999999999999998876443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00026 Score=55.60 Aligned_cols=113 Identities=10% Similarity=0.106 Sum_probs=78.6
Q ss_pred CCEEEEEecCCeEEEEeCCC-Ccee-EEEec-CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 30 GDLALVATLNGTVHLVDTKR-GESR-WSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~t-G~~~-W~f~t-~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
+..++.|+.||.|+..|..+ ++.+ -.+.. .++|..-....++..++-+..||.++..|..+++.+. ...-...|.+
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~ 132 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKT 132 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEE
Confidence 47899999999999999998 6655 45543 3344432222355666666678899999999998743 3333334443
Q ss_pred ceeE-eeCC-eEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPHV-WDDG-ALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~v-~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
--.. ..++ .++.|+.|+.++..|..+|+.+..+....
T Consensus 133 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 133 IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 3221 2234 47889999999999999999998887654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00035 Score=55.78 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=76.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee---CCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~---d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.+..++.++.||.|+..|..+++....++...++....... ++..++.+..++.++.+|..+++. ...+.....-.
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v 189 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEI 189 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCE
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcE
Confidence 55689999999999999999999999999877766433332 334566666778999999999887 44554332222
Q ss_pred cceeEeeCC--eEEEEeeCCEEEEEECCCCc
Q 031361 106 RMPHVWDDG--ALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 106 ssP~v~~dg--~VyvGs~d~~lyalDa~TG~ 134 (161)
.+-....++ .++.|+.|+.++..|.++++
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 222233334 37789999999999998887
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00025 Score=55.48 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=69.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc------
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE------ 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~------ 102 (161)
.+..++.|+.||.|+..|..+++++..++...++..-....++.++.. ..|+.++..|.+++.. ...++...
T Consensus 226 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 303 (340)
T 4aow_A 226 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA-ATGPSIKIWDLEGKII-VDELKQEVISTSSK 303 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE-EETTEEEEEETTTTEE-EEEECCC-------
T ss_pred CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec-cCCCEEEEEECCCCeE-EEeccccceeeecc
Confidence 567899999999999999999999999998877664332223344444 4567999999888766 33332211
Q ss_pred ----ceecceeEeeC-CeEEEEeeCCEEEEEECCCCcE
Q 031361 103 ----FMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 103 ----~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~ 135 (161)
.|.+- ....| ..++.|+.|+.++.=|.+||+.
T Consensus 304 ~h~~~v~~l-~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 304 AEPPQCTSL-AWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp CCCCCEEEE-EECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred CCCCCEEEE-EECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 11111 12223 4577899999999999999863
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00092 Score=51.96 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=72.6
Q ss_pred CCCEEEEEec--CCeEEEEeCCCCceeEEEecCCC-eecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATL--NGTVHLVDTKRGESRWSFSMGKP-IYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~--DG~lyAvd~~tG~~~W~f~t~~~-i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.++.+|+++. ++.|+.+| .+|+.++++..... -.....+ .++.+||....++.++.+|+ +|+. .+.+......
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~ 163 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNV-LHKFGCSKHL 163 (286)
T ss_dssp TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCE-EEEEECTTTC
T ss_pred CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCE-EEEeCCCCcc
Confidence 4788999985 89999999 68999998865421 1111122 25567887666678999985 4655 3333221111
Q ss_pred --ecceeEeeCCeEEEEe-eCCEEEEEECCCCcEEEEecCCC
Q 031361 105 --RRMPHVWDDGALLLGH-EKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 105 --~ssP~v~~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
...-++..++.+|+.. .++.++.+|. +|+.++++...+
T Consensus 164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g 204 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEG 204 (286)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTT
T ss_pred CCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCC
Confidence 1122344458899875 5889999996 788888887643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00066 Score=53.31 Aligned_cols=111 Identities=9% Similarity=0.018 Sum_probs=78.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC------CCeecceEeeC----CCeEEecCCCCEEEEEECCCCCeecccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG------KPIYSSFTRND----PDFYVDVGEDWKLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~------~~i~ssp~~~d----~~~~V~~~ddg~Lyald~~tG~~~~w~~ 98 (161)
.+..+++++.||.|+..|..+++.+..++.- +.+.+-.-..+ +..++-+..||.++.+|..+++. ...+
T Consensus 33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~ 111 (366)
T 3k26_A 33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-IKHY 111 (366)
T ss_dssp TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-EEEE
T ss_pred CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-eeee
Confidence 4677999999999999999999998887632 33443222233 34566566778999999999988 4444
Q ss_pred Cc-ccceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 99 DV-GEFMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 99 ~~-~~~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.. .+.|.+--... +...++.|+.|+.++..|..+|+.+..+.
T Consensus 112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence 42 23333322222 33557889999999999999999999884
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00093 Score=54.86 Aligned_cols=109 Identities=9% Similarity=-0.029 Sum_probs=77.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEec--CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceec
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSM--GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRR 106 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t--~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~s 106 (161)
++.++.++.||.|+..|..+|+....+.. ..+|.+-.-..++..++-+..||.++.+|..+++. ...+... ..|.+
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~ 181 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-LRTMAGHQARVGC 181 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-EEEecCCCCceEE
Confidence 46688999999999999999999998887 34444322223556666566677999999999987 4444333 23333
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECC-CCcEEEEecC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAK-SGGMICSHES 141 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~-TG~~~W~~~~ 141 (161)
- .. ++..++.|+.|+.++..|.+ .++.+..+..
T Consensus 182 ~-~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 215 (401)
T 4aez_A 182 L-SW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG 215 (401)
T ss_dssp E-EE-ETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred E-EE-CCCEEEEEcCCCCEEEEecccCcceeeEEcC
Confidence 2 22 44778899999999999998 5666666654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.001 Score=53.62 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=79.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc---ce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE---FM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~---~V 104 (161)
.+..++.|+.||.|+..|.++|+.+-+|.... +|.+-....++..++-++.|+.+...|..+++. ...+.... .|
T Consensus 195 ~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~v 273 (340)
T 1got_B 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGI 273 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE-EEEEccCCcccce
Confidence 56688999999999999999999999887533 344322223556666667788999999988876 43333222 22
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.+--+..+...+..|+.|+.++.-|..+++.+..+..
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence 2211112224577899999999999999999888764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00048 Score=54.08 Aligned_cols=114 Identities=10% Similarity=0.042 Sum_probs=78.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCc-eeEEEecCC-Ceecce-----E-eeCCCeEEecCCCCEEEEEECCCCCeeccccCcc
Q 031361 30 GDLALVATLNGTVHLVDTKRGE-SRWSFSMGK-PIYSSF-----T-RNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~-~~W~f~t~~-~i~ssp-----~-~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
+..++.|+.||.|+..|..+++ ++.++.... ++..-. . ..++..++-+..|+.++.+|..+++.....+...
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence 6889999999999999999999 888887543 333221 1 1245566666678899999998886324334332
Q ss_pred c-----ceecce---eE-eeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 102 E-----FMRRMP---HV-WDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 102 ~-----~V~ssP---~v-~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+ .+.+.. .. .++..++.|+.|+.++..|.++++..+......
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 210 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKN 210 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCC
Confidence 1 232222 12 233557789999999999999999988766543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00062 Score=54.01 Aligned_cols=108 Identities=10% Similarity=0.098 Sum_probs=66.8
Q ss_pred CCEEE-EEecCCeEEEEeCCCCceeEEE-ecCCCeecceEeeCCCeEEecCCC----CEEEEEECCCCCeeccccCc-cc
Q 031361 30 GDLAL-VATLNGTVHLVDTKRGESRWSF-SMGKPIYSSFTRNDPDFYVDVGED----WKLYFHRKGIGKMKKPSIDV-GE 102 (161)
Q Consensus 30 ~~~V~-vgs~DG~lyAvd~~tG~~~W~f-~t~~~i~ssp~~~d~~~~V~~~dd----g~Lyald~~tG~~~~w~~~~-~~ 102 (161)
++.+| +++.+|.|+.+|..+|+..-.+ .....+.+-....++.+++....+ +.|+.+|..+++........ ..
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 45566 4678899999999999876433 223333332112356777776555 58999999888763221111 11
Q ss_pred ceecceeEeeCCeEEEEee-------CCEEEEEECCCCcEEE
Q 031361 103 FMRRMPHVWDDGALLLGHE-------KTSVFFVDAKSGGMIC 137 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~-------d~~lyalDa~TG~~~W 137 (161)
.-....++..||.+|+++. .+.+|.+|.++|+...
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP 176 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE
Confidence 1111224455688999886 3789999988887653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.001 Score=54.21 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=74.3
Q ss_pred CEEEEEecCCeEEEEeCCCCce----eEEEecCC-------------CeecceEe-eCCCeEEecCCCCEEEEEECCC-C
Q 031361 31 DLALVATLNGTVHLVDTKRGES----RWSFSMGK-------------PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGI-G 91 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~----~W~f~t~~-------------~i~ssp~~-~d~~~~V~~~ddg~Lyald~~t-G 91 (161)
..++.|+.||.|+..|.++++. ...++... ++.+ ... .++..++-+.+ +.++.+|..+ +
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~-~~v~iwd~~~~~ 317 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISD-VKFSHSGRYMMTRDY-LSVKVWDLNMEN 317 (447)
T ss_dssp TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEE-EEECTTSSEEEEEES-SEEEEEETTCCS
T ss_pred cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEE-EEECCCCCEEEEeeC-CeEEEEeCCCCc
Confidence 7999999999999999999997 77776544 3433 223 25566665556 8999999987 7
Q ss_pred CeeccccCcccceecc---------------eeEeeC-CeEEEEeeCCEEEEEECCCCcEEE
Q 031361 92 KMKKPSIDVGEFMRRM---------------PHVWDD-GALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 92 ~~~~w~~~~~~~V~ss---------------P~v~~d-g~VyvGs~d~~lyalDa~TG~~~W 137 (161)
+. ...+...+.+.+. -....| ..++.|+.|+.++..|..+|+.+.
T Consensus 318 ~~-~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 318 RP-VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp SC-SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred cc-cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 66 5555555433321 223333 457889999999999999999873
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00035 Score=60.33 Aligned_cols=113 Identities=12% Similarity=-0.031 Sum_probs=81.2
Q ss_pred CCCCCEEEEEec-----CCeEEEEeCCCCceeEEEecCCCeecceEee-CC-CeEEecC---------CCCEEEEEECCC
Q 031361 27 PESGDLALVATL-----NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVG---------EDWKLYFHRKGI 90 (161)
Q Consensus 27 ~~~~~~V~vgs~-----DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~-~~~V~~~---------ddg~Lyald~~t 90 (161)
+..+..+||.+. ++.|+.+|..|++++.+++++..-. ..+. |+ .+||-.. +++.+..+|..|
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~--va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN--PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE--EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc--EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 357899999987 7899999999999999999876432 3333 44 4677542 234799999999
Q ss_pred CCeeccccCccc----ceeccee---EeeC-CeEEEEee--CCEEEEEECCCCcEEEEecCC
Q 031361 91 GKMKKPSIDVGE----FMRRMPH---VWDD-GALLLGHE--KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 91 G~~~~w~~~~~~----~V~ssP~---v~~d-g~VyvGs~--d~~lyalDa~TG~~~W~~~~~ 142 (161)
+++ .-.+.++. .+...|. ++.| ..+|+... ++.+..||.+|++++.+....
T Consensus 119 ~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 119 LLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp CCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence 988 44444321 1222342 3334 46899874 689999999999999998754
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00066 Score=52.20 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=61.5
Q ss_pred CCEEEEEec-CCeEEEEeCCCCceeEEEecCC---CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCccc-c
Q 031361 30 GDLALVATL-NGTVHLVDTKRGESRWSFSMGK---PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-F 103 (161)
Q Consensus 30 ~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~ 103 (161)
++.+|+++. ++.|+.+|. +|+.. .+.... .+.+ ... .++.+||....++.|+.+|+ +|+...+....+. .
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~-i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~ 268 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHA-ITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAE 268 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEE-EEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCC
T ss_pred CCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCcee-EEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCc
Confidence 467888875 789999999 88754 233321 1221 122 25578887756668999998 6766444333221 1
Q ss_pred eecceeEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 104 MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
+.+- ++ .++.+|++...+.++.+|++++++
T Consensus 269 ~~~i-~~-~~g~l~v~~~~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 269 PHGI-CF-DGETIWFAMECDKIGKLTLIKDNM 298 (299)
T ss_dssp EEEE-EE-CSSCEEEEETTTEEEEEEEC----
T ss_pred cceE-Ee-cCCCEEEEecCCcEEEEEcCcccC
Confidence 2221 23 568899998788999999988764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00072 Score=56.27 Aligned_cols=113 Identities=5% Similarity=0.035 Sum_probs=79.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~s 106 (161)
.+..++.|+.||+|+..|..+|+..-+++... +|..-....++..++-++.|+.+...|..+++. ...+..+ ..|.+
T Consensus 119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~V~~ 197 (410)
T 1vyh_C 119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSS 197 (410)
T ss_dssp SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE-EECCCCCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCEEE
Confidence 46789999999999999999999998887533 343322223556666666787888888888776 3333332 22333
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
--+..++..++.|+.|++++.-|..+|+.+.++...
T Consensus 198 v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 222223356788999999999999999998888643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00074 Score=56.46 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=77.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeE----EEec-CCCeecceEeeC---CCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRW----SFSM-GKPIYSSFTRND---PDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W----~f~t-~~~i~ssp~~~d---~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.+..+++|+.||.++.+|..+++..- .+.. ..++..-....+ +..++-+..|+.++.+|..+|+...-....
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 56789999999999999999888653 3332 233443222235 556666667889999999988763221222
Q ss_pred c-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 101 G-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 101 ~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
. ..|. +..+.++..++.|+.|+.++..|..+|+.+..+..
T Consensus 240 h~~~v~-~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 240 HKHFVS-SICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp CSSCEE-EEEECSTTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred CCCceE-EEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 2 2333 33444445678899999999999999999988874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0018 Score=53.84 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=77.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~s 106 (161)
.++.++.|+.||+|+..|..+|+.+-+|............ .++..++-++.|+.+...|..+++. .-.+.... .|.+
T Consensus 203 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVEC 281 (410)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-eeEecCCCceEEE
Confidence 5678999999999999999999999888754432222222 2556677677788999999888876 33332221 1211
Q ss_pred ---ceeE-----------------eeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 107 ---MPHV-----------------WDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 107 ---sP~v-----------------~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+|-- .....++.|+.|++++..|..+|+.+..+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~ 336 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence 1210 0124578899999999999999999988764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00054 Score=59.19 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=79.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCce----eEE-Eec----CC--Ceecce-Eee--CCCeEEecCC---------CCEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGES----RWS-FSM----GK--PIYSSF-TRN--DPDFYVDVGE---------DWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~----~W~-f~t----~~--~i~ssp-~~~--d~~~~V~~~d---------dg~Lya 85 (161)
.++.+++.|.+|++|.+|..++.+ .|+ |.. .+ |--..+ .+. .+..||--.+ +.+++.
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 367777788899999999987753 255 211 00 000001 112 2356774321 247999
Q ss_pred EECCCCCeeccccCcccceecceeEeeCC--eEEEEee-CCEEEEEECCCCcEEEEecCCCCCCCc
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDDG--ALLLGHE-KTSVFFVDAKSGGMICSHESDNSASTL 148 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~dg--~VyvGs~-d~~lyalDa~TG~~~W~~~~~~~~~~~ 148 (161)
+|.+|++. .-++.++..+.+-- ++.|+ .+|+... ++.+..+|++|||++.+.....+.+.+
T Consensus 316 iD~~t~kv-~~~i~vg~~~~~la-vs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l 379 (386)
T 3sjl_D 316 LDAKTGER-LAKFEMGHEIDSIN-VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV 379 (386)
T ss_dssp EETTTCCE-EEEEEEEEEECEEE-ECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCE
T ss_pred EECCCCeE-EEEEECCCCcceEE-ECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCcee
Confidence 99999999 66777776444332 34445 4777665 889999999999999999999988865
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0013 Score=51.55 Aligned_cols=110 Identities=8% Similarity=-0.018 Sum_probs=82.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceE--eeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFT--RNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~--~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..++.++.||.|+..|..+++.+..+....++..-.- ..++..++-+..|+.++.+|..+++. ...++..+.+.+
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~ 175 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPERCYC 175 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSSCEEE
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCCCceE
Confidence 567899999999999999999999988777777765332 22445566666788999999999987 666666554433
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.-. .. ..+++++.++.++..|..++...++...
T Consensus 176 ~~~-~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 208 (368)
T 3mmy_A 176 ADV-IY-PMAVVATAERGLIVYQLENQPSEFRRIE 208 (368)
T ss_dssp EEE-ET-TEEEEEEGGGCEEEEECSSSCEEEEECC
T ss_pred EEe-cC-CeeEEEeCCCcEEEEEeccccchhhhcc
Confidence 222 33 5688999999999999988877666443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.002 Score=52.47 Aligned_cols=113 Identities=17% Similarity=0.123 Sum_probs=78.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCccc-ce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V 104 (161)
.+..++.++.||+|+..|..+|+.+=+|.... ++..--... ++..++-++.|+.++..|..+|+. ...+..++ .|
T Consensus 165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v 243 (354)
T 2pbi_B 165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDV 243 (354)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCe
Confidence 45689999999999999999999998887533 333221111 335666666788999999999987 44444332 23
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.+--+.-+...++.|+.|++++..|.++++.+-.+...
T Consensus 244 ~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~ 281 (354)
T 2pbi_B 244 NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 32111112356788999999999999999888777644
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00081 Score=55.04 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=78.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CC-CeEEecCCCCEEEEEECCCCCeeccccCc--ccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDV--GEF 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~--~~~ 103 (161)
.+..++.|+.||.|+..|..+|+++.+|+... ++.+ ..+. ++ ..++-+..|+.++..|.++|+. ...+.. .+.
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~-v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~~ 227 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC-VAACPGKDTIFLSCGEDGRILLWDTRKPKP-ATRIDFCASDT 227 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-EEECTTCSSCEEEEETTSCEEECCTTSSSC-BCBCCCTTCCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE-EEEccCCCceeeeeccCCceEEEECCCCce-eeeeeeccccc
Confidence 56788999999999999999999999997644 3433 3332 33 3566666788999999988876 322222 111
Q ss_pred eecceeEe--eCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 104 MRRMPHVW--DDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 104 V~ssP~v~--~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
...+-... ++..+..|+.|+.++..|.++|+.+..+....
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~ 269 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS 269 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc
Confidence 11111121 22346689999999999999999998886543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0016 Score=53.11 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=76.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccccee--c
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR--R 106 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~--s 106 (161)
+..++.|+.||.|+..|.++|+.+-+++... +|.+-....++..++-++.|+.+...|..+++. .-.+....... .
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-VAIYSKESIIFGAS 288 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCccccee
Confidence 5789999999999999999999998886533 344322223566777777788999999888765 22222221111 1
Q ss_pred ceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 107 MPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 107 sP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+-... +...++.|+.|++++.-|..+|+.+..+..
T Consensus 289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~ 324 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG 324 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC
Confidence 11122 224577899999999999999998877653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0011 Score=52.46 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=74.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-----CCCeecceEeeCCCeEEecCCCCEEEEEECC--------------
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKG-------------- 89 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-----~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~-------------- 89 (161)
.+..+++++.||.|+..|..+++..|.... ..++.+-....++..++-+..|+.++.+|..
T Consensus 107 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 186 (372)
T 1k8k_C 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186 (372)
T ss_dssp TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccc
Confidence 567899999999999999988886555432 1223322112255666666677899999943
Q ss_pred ----CCCeeccccCcccceecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 90 ----IGKMKKPSIDVGEFMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 90 ----tG~~~~w~~~~~~~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+|+. ...+.....-..+.....+ ..++.|+.|+.++..|.++|+.+.++...
T Consensus 187 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 187 SKMPFGEL-MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp SCCCTTCE-EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred cccchhhh-eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence 5555 3333322221122223223 46889999999999999999999998754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0013 Score=58.26 Aligned_cols=112 Identities=12% Similarity=0.132 Sum_probs=80.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+..+.+|+.||.|+-.|..+|+.+.++... +++..-.-..++..++-+++||.++.+|..+|+. ...+..+..-..+
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~v~~ 102 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-VVDFEAHPDYIRS 102 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCCEEE
Confidence 5788999999999999999999999999853 4455432233566666666788999999999987 5555433322223
Q ss_pred eeEeeCC-eEEEEeeCCEEEEEECCCC-cEEEEecC
Q 031361 108 PHVWDDG-ALLLGHEKTSVFFVDAKSG-GMICSHES 141 (161)
Q Consensus 108 P~v~~dg-~VyvGs~d~~lyalDa~TG-~~~W~~~~ 141 (161)
.....++ .+++|+.|+.+...|..++ +....+..
T Consensus 103 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 103 IAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred EEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 3333334 5889999999999999988 55555543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0022 Score=52.75 Aligned_cols=114 Identities=19% Similarity=0.224 Sum_probs=71.7
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecC--------CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc-
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMG--------KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS- 97 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~--------~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~- 97 (161)
|..+..+..|+.||.|+..|..+|+.+-++... .+|.+-....++..++-++.|+.+...|..++.. ...
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~-~~~~ 294 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-KSDS 294 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-cccc
Confidence 346778999999999999999999998887432 2233211122556666666777888888766533 111
Q ss_pred -----------cCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 98 -----------IDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 98 -----------~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+..+ +.|.+.-...++..++.|+.|+.++.-|.++|+.+..+..
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 1111 1222222222335578899999999999999999988764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00073 Score=54.51 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=75.9
Q ss_pred EEEEEecCCeEEEEeCCC----CceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcc-----
Q 031361 32 LALVATLNGTVHLVDTKR----GESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG----- 101 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~t----G~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~----- 101 (161)
.++.++.||.|+..|..+ ++.+-.+....++.+-.... ++..++-+..|+.++.+|..+++. ...+...
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK-PDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS-CSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc-cccccccccccc
Confidence 899999999999999998 77787776666666533233 556666666778999999988876 3222211
Q ss_pred ---cceec--ce-------eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 102 ---EFMRR--MP-------HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 102 ---~~V~s--sP-------~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
..+.. +| ....|+.. .|+.|+.++..|..+|+.+.++....
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred ccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC
Confidence 11111 11 11223444 77899999999999999999987543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0012 Score=59.12 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=78.5
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECC--CCCeeccccCccccee
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKG--IGKMKKPSIDVGEFMR 105 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~--tG~~~~w~~~~~~~V~ 105 (161)
++++||.. .+|.|..+|..|++++.+++++...+......|+. +|+.. +++.++.+|.. ++++ ...+.++..-.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~~~-v~~i~~G~~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTT-VAEIKIGSEAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCCE-EEEEECCSEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-CCCeEEEEECCCCCCcE-eEEEecCCCCc
Confidence 35666655 57899999999999999999987766432223554 56655 56799999985 8877 44555443221
Q ss_pred cceeEe-----eCCeEEEEe-eCCEEEEEECCCCcEEEEecCCC
Q 031361 106 RMPHVW-----DDGALLLGH-EKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 106 ssP~v~-----~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.- .++ ++..+|+++ .++++..+|.+|++++.+.....
T Consensus 244 ~i-a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~ 286 (567)
T 1qks_A 244 SI-ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 286 (567)
T ss_dssp EE-EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred ee-EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence 11 234 334688877 45899999999999999988653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0015 Score=50.22 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCce-eEEEec-CCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGES-RWSFSM-GKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~-~W~f~t-~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.++.+|+++. +|.|+.+|.. |+. .+.... ...+.+ ... .++.+|+....++.++.+|+ +|+...........-
T Consensus 66 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~-i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~ 142 (299)
T 2z2n_A 66 SDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYG-ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSY 142 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE-EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCcee-eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCC
Confidence 3577888876 7889999986 553 232221 111211 122 24577877666679999998 787744433211111
Q ss_pred ecceeEeeCCeEEEEee-CCEEEEEECCCCcEEE
Q 031361 105 RRMPHVWDDGALLLGHE-KTSVFFVDAKSGGMIC 137 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~-d~~lyalDa~TG~~~W 137 (161)
...-++..++.+|++.. ++.++.+|. +|+...
T Consensus 143 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 175 (299)
T 2z2n_A 143 PSFITLGSDNALWFTENQNNAIGRITE-SGDITE 175 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE
Confidence 11223344578999775 589999999 898775
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00073 Score=58.85 Aligned_cols=113 Identities=12% Similarity=-0.049 Sum_probs=80.6
Q ss_pred CCCCCEEEEEecC-----CeEEEEeCCCCceeEEEecCCCeecceEee-CC-CeEEecC---------CCCEEEEEECCC
Q 031361 27 PESGDLALVATLN-----GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVG---------EDWKLYFHRKGI 90 (161)
Q Consensus 27 ~~~~~~V~vgs~D-----G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~-~~~V~~~---------ddg~Lyald~~t 90 (161)
|.....+||.+.. +.|+.+|..|++++++++++..- ...+. |+ .+||... +++.+..+|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 3577899999885 69999999999999999998632 23333 44 4777652 345899999999
Q ss_pred CCeeccccCcc---cc-eeccee---EeeC-CeEEEEee--CCEEEEEECCCCcEEEEecCC
Q 031361 91 GKMKKPSIDVG---EF-MRRMPH---VWDD-GALLLGHE--KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 91 G~~~~w~~~~~---~~-V~ssP~---v~~d-g~VyvGs~--d~~lyalDa~TG~~~W~~~~~ 142 (161)
+++ .-.+.++ .. +...|. ++.| +.+|+... ++++..||.+|++++.++...
T Consensus 159 ~~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 159 FLP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp CCE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CcE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence 998 4334432 00 112232 4434 46899875 579999999999999998864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00078 Score=62.96 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=84.2
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
..+..+.+|+.||.|+..|..+|+...++.....-..+... .++..++-++.||.++..|..+|+. .....-.+.|.+
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKD 1049 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE-ECCBCCSSCEEE
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce-EEEecCCCcEEE
Confidence 36789999999999999999999999887644332222333 3566777777888999999999988 333333333433
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.- ...++.++.|+.|+.++..|..+|+...++...
T Consensus 1050 ~~-~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 1084 (1249)
T 3sfz_A 1050 FR-LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084 (1249)
T ss_dssp EE-ECSSSEEEEEESSSEEEEEETTTTCCCEEEECC
T ss_pred EE-EcCCCcEEEEECCCcEEEEECCCCceeEEEccc
Confidence 22 333588999999999999999999999888643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0017 Score=58.06 Aligned_cols=122 Identities=11% Similarity=0.122 Sum_probs=83.8
Q ss_pred CCCEEEEEecCCeEEEEeCC--CCceeEEEecCCCeecceEee-----CC-CeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 29 SGDLALVATLNGTVHLVDTK--RGESRWSFSMGKPIYSSFTRN-----DP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~--tG~~~W~f~t~~~i~ssp~~~-----d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.+..+|+++.||.|+.+|.. +++++.+++++..-.. ..+. |+ -+|+....++.+..+|..|+++ ...+.+
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~-ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~ 284 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS-IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQST 284 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE-EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEEC
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce-eEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEec
Confidence 67899999999999999996 9999999998763332 2233 44 3667666677888889888877 444443
Q ss_pred ccc---------------eecce----------------------------------------eEeeCCe-EEEEe-eCC
Q 031361 101 GEF---------------MRRMP----------------------------------------HVWDDGA-LLLGH-EKT 123 (161)
Q Consensus 101 ~~~---------------V~ssP----------------------------------------~v~~dg~-VyvGs-~d~ 123 (161)
+.. +..|| .++.|++ +|+.+ .++
T Consensus 285 ~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn 364 (567)
T 1qks_A 285 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN 364 (567)
T ss_dssp CEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred cccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCC
Confidence 210 00011 1122333 55655 578
Q ss_pred EEEEEECCCCcEEEEecCCCCCCCcCCCC
Q 031361 124 SVFFVDAKSGGMICSHESDNSASTLGSGL 152 (161)
Q Consensus 124 ~lyalDa~TG~~~W~~~~~~~~~~~~~~~ 152 (161)
++..||.+||++++.....+..+++|.+.
T Consensus 365 ~V~ViD~~t~kl~~~i~vgg~~Phpg~g~ 393 (567)
T 1qks_A 365 KLVVIDTKEGKLVAIEDTGGQTPHPGRGA 393 (567)
T ss_dssp EEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred eEEEEECCCCcEEEEEeccCcCCCCccce
Confidence 99999999999999998745677776554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0016 Score=50.05 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=64.9
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecC--C-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccc
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMG--K-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~--~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
.++.+|+++. ++.|+.+|.. |+.. ++... . .+.+ ... .++.+|+....++.++.+|+. |+...+.......
T Consensus 71 ~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~-i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 71 SLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYG-ITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp TTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEE-EEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred CCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCcc-ceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 4577888876 6889999998 7764 33322 1 1211 122 256788877666799999987 8774443321111
Q ss_pred eecceeEeeCCeEEEEee-CCEEEEEECCCCcEEE
Q 031361 104 MRRMPHVWDDGALLLGHE-KTSVFFVDAKSGGMIC 137 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~-d~~lyalDa~TG~~~W 137 (161)
-...-++..++.+|++.. ++.++.+|. +|+...
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 180 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE 180 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE
Confidence 111222344577998876 678999998 887764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00096 Score=53.79 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=75.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CCC-eEEecCCCCEEEEEECCC----CCeeccccCcc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGI----GKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~t----G~~~~w~~~~~ 101 (161)
.+..++.|+.||.|+..|. +|+++.++.... +|.+ .... ++. .++-+..|+.++.+|..+ +.. ...+.-.
T Consensus 174 ~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~ 250 (383)
T 3ei3_B 174 SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH-AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY-IAEMPHE 250 (383)
T ss_dssp TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE-EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE-EEEEECS
T ss_pred CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE-EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce-EEEecCC
Confidence 5779999999999999999 799999997543 3443 3333 444 566666788999999887 444 2222222
Q ss_pred cceecceeEe--eCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 102 EFMRRMPHVW--DDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 102 ~~V~ssP~v~--~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
..|.+ .... +...++.|+.|+.++..|.++++...++.
T Consensus 251 ~~v~~-~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 251 KPVNA-AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp SCEEE-EEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred CceEE-EEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 22322 2222 33457789999999999999998876665
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0011 Score=51.84 Aligned_cols=111 Identities=7% Similarity=-0.042 Sum_probs=73.0
Q ss_pred CCCEEEEEecCCeEEEEeCCC-CceeEEEe---cCCCeecceEee--CCCeEEecCCCCEEEEEECCCC------Ceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKR-GESRWSFS---MGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIG------KMKKP 96 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~t-G~~~W~f~---t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG------~~~~w 96 (161)
..+.+++++.||.|+..|.++ ++...... ...++.. .... ++..++-+..+|.++..+..++ +. ..
T Consensus 159 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~ 236 (342)
T 1yfq_A 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD-VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK-RF 236 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE-EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT-CE
T ss_pred cCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeE-EEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc-ce
Confidence 345599999999999999998 77543332 2333433 2332 4566666667778888777665 33 44
Q ss_pred ccCccc----------ceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 97 SIDVGE----------FMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 97 ~~~~~~----------~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.+.... .|.+. ... +...++.|+.|+.++..|..+|+.+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSI-EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEE-EECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred eeecccccccccccceeEEEE-EEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 443332 22221 222 3355889999999999999999999987753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00024 Score=55.75 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=77.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCc----eeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEEC-CCCCeeccccC-cc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGE----SRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRK-GIGKMKKPSID-VG 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~----~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~-~tG~~~~w~~~-~~ 101 (161)
.+..+++++.||.|+..|..+++ ++..+....++..-....++. .++-+..+|.++.+|. .+++.+.+.-. -.
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 101 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN 101 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCC
Confidence 56789999999999999999998 777776666666543344667 5555556779999999 88877443320 22
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECCC---------CcEEEEec
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAKS---------GGMICSHE 140 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~T---------G~~~W~~~ 140 (161)
+.|.+--... ++.++.|+.|+.++..|.++ ++.+.++.
T Consensus 102 ~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 102 LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 2333321112 47788999999999999887 76555444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0026 Score=48.76 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=65.3
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecCCCee--cceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMGKPIY--SSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~~i~--ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.++.+|+++. ++.|+.+|.. |+... +....... ..... .++.+|+....++.++.+|+. |+.+.+.......-
T Consensus 29 ~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~ 105 (300)
T 2qc5_A 29 EDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSG 105 (300)
T ss_dssp TTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCC
T ss_pred CCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCC
Confidence 3678888884 7999999998 77653 43322111 11122 245678876666789999988 87744433211111
Q ss_pred ecceeEeeCCeEEEEee-CCEEEEEECCCCcEE
Q 031361 105 RRMPHVWDDGALLLGHE-KTSVFFVDAKSGGMI 136 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~-d~~lyalDa~TG~~~ 136 (161)
...-++..++.+|++.. ++.++.+|++ |+..
T Consensus 106 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 106 PYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred CccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence 11122344588999876 7899999988 8876
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0012 Score=52.97 Aligned_cols=110 Identities=12% Similarity=0.046 Sum_probs=73.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC--CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc--ccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG--KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV--GEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~--~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~--~~~V 104 (161)
.+..++.++.||+|+..|..+|+....+... .++.+-....++..++-+..||.++.+|.++|+.....++. ...|
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v 217 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCE
Confidence 5678888999999999999999997766433 23433222235566666667889999999999873244544 2333
Q ss_pred ecceeEeeCCe-EEEEeeCCEEEEEECCCCcEEEEec
Q 031361 105 RRMPHVWDDGA-LLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 105 ~ssP~v~~dg~-VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.+-= ...++. +..|+ ++.++.-|.++++....+.
T Consensus 218 ~~l~-fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 218 KEVK-FADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp EEEE-ECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred EEEE-EeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence 3222 233344 55666 6699999999998765443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.003 Score=51.70 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=77.3
Q ss_pred CCCCEEEEEecCCeEEEEeCC-CCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc---
Q 031361 28 ESGDLALVATLNGTVHLVDTK-RGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE--- 102 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~-tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~--- 102 (161)
..++.++.|+.||+|+..|.+ +++.+-++... ++|.+-....++..++-+++|+.+...|..+|+. ...+....
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~ 294 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRN 294 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE-EEEECCCCSSS
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE-EEEeccccccc
Confidence 367889999999999999987 55777666542 3344322223567777777888999999999876 32222211
Q ss_pred ----ceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 103 ----FMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 103 ----~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
....+-... +...++.|+.|+.++.-|..+|+.+.++..
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 338 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence 011222222 235578899999999999999999988743
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0021 Score=52.46 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEe--c-CCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeecccc-Ccccce
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFS--M-GKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSI-DVGEFM 104 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~--t-~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~-~~~~~V 104 (161)
...++.++.||.|+..|..+|+.+.++. . ..+|.+ ... .++..++-+..|+.++.+|.++|+. ...+ ...+..
T Consensus 144 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~ 221 (402)
T 2aq5_A 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYS-VDWSRDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGT 221 (402)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEE-EEECTTSSCEEEEETTSEEEEEETTTTEE-EEEEECSSCSS
T ss_pred CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEE-EEECCCCCEEEEEecCCcEEEEeCCCCce-eeeeccCCCCC
Confidence 3689999999999999999999999994 2 233443 233 2556666666788999999999987 4443 222211
Q ss_pred -ecceeEeeCCe-EEEE---eeCCEEEEEECCCCcE
Q 031361 105 -RRMPHVWDDGA-LLLG---HEKTSVFFVDAKSGGM 135 (161)
Q Consensus 105 -~ssP~v~~dg~-VyvG---s~d~~lyalDa~TG~~ 135 (161)
..+-....|+. +++| +.|+.++..|..+++.
T Consensus 222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 22223333454 4567 6899999999999875
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.002 Score=51.76 Aligned_cols=108 Identities=9% Similarity=0.026 Sum_probs=65.7
Q ss_pred EEEEecCCeEEEE---------eCCCCceeEEEecC--CCeecceEee--CCCeEEecCCCCEEEEEECCCCCeecccc-
Q 031361 33 ALVATLNGTVHLV---------DTKRGESRWSFSMG--KPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSI- 98 (161)
Q Consensus 33 V~vgs~DG~lyAv---------d~~tG~~~W~f~t~--~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~- 98 (161)
++.++.||++... |..+++.+.++..+ ++|..-.... ++..++-++.|+.++..|..+|+..+...
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 5666666666666 44456655555543 2333321122 45667766678899999999998733221
Q ss_pred CcccceecceeEeeCC-eEEEEeeCCEEEEEECCCCcEE-EEecC
Q 031361 99 DVGEFMRRMPHVWDDG-ALLLGHEKTSVFFVDAKSGGMI-CSHES 141 (161)
Q Consensus 99 ~~~~~V~ssP~v~~dg-~VyvGs~d~~lyalDa~TG~~~-W~~~~ 141 (161)
.....+.+. .+..|+ .+..|+.|+.++..|.++|+.. .++..
T Consensus 168 ~~~~~i~~~-~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~ 211 (343)
T 3lrv_A 168 KSDVEYSSG-VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV 211 (343)
T ss_dssp CSSCCCCEE-EECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC
T ss_pred CCCCceEEE-EECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec
Confidence 222223322 222234 4567999999999999999987 77765
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0036 Score=58.50 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=81.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCccc-cee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ 105 (161)
.+..+..|+.||+|+-.|..+|+.+.+++... +|.+ ... .++..++-++.|+.+...|..+|+. ...+..+. .|.
T Consensus 626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~ 703 (1249)
T 3sfz_A 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC-CAFSSDDSYIATCSADKKVKIWDSATGKL-VHTYDEHSEQVN 703 (1249)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEE-EEEecCCCEEEEEeCCCeEEEEECCCCce-EEEEcCCCCcEE
Confidence 56788899999999999999999999997533 3443 333 3556666666788999999999988 44444332 222
Q ss_pred cceeEe---eCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 106 RMPHVW---DDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 106 ssP~v~---~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+ -... +...++.|+.|+.++..|..+|+.+..+...
T Consensus 704 ~-~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h 742 (1249)
T 3sfz_A 704 C-CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742 (1249)
T ss_dssp E-EEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC
T ss_pred E-EEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC
Confidence 2 2222 2235678999999999999999999887643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0039 Score=51.02 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=75.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC------CeecceEee--CCCeEEecCCCCEEEEEECCCC-CeeccccC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK------PIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIG-KMKKPSID 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~------~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG-~~~~w~~~ 99 (161)
.+..++.|+.||+|+..|..+|+.+-.|.... ++.+ .... ++..++-++.|+.+...|.+.+ +. ...+.
T Consensus 169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~-~~~~~ 246 (380)
T 3iz6_a 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS-LSINSLNANMFISGSCDTTVRLWDLRITSRA-VRTYH 246 (380)
T ss_dssp SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE-EEECSSSCCEEEEEETTSCEEEEETTTTCCC-CEEEC
T ss_pred CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE-EEeecCCCCEEEEEECCCeEEEEECCCCCcc-eEEEC
Confidence 35679999999999999999999998884322 2222 1121 4566766677889998897643 33 33333
Q ss_pred ccc-ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 100 VGE-FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 100 ~~~-~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.++ .|.+--+.-+...++.|+.|+++..-|..+|+.+..+....
T Consensus 247 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 222 23221111132457789999999999999999998887643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0025 Score=48.00 Aligned_cols=99 Identities=10% Similarity=0.135 Sum_probs=66.6
Q ss_pred ecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCC-CCeeccccCcccceecceeEeeCCe
Q 031361 37 TLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGI-GKMKKPSIDVGEFMRRMPHVWDDGA 115 (161)
Q Consensus 37 s~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~t-G~~~~w~~~~~~~V~ssP~v~~dg~ 115 (161)
+.|+.|+..|..+|+++..+.....+.+.....|+..++.+. ++.++.+|..+ |+.+.............+....|+.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 97 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA 97 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence 468999999999999997776666665432233666665554 55999999999 8774443222223334566654554
Q ss_pred -EEEEe----eCCEEEEEECCCCcEE
Q 031361 116 -LLLGH----EKTSVFFVDAKSGGMI 136 (161)
Q Consensus 116 -VyvGs----~d~~lyalDa~TG~~~ 136 (161)
+++++ ....+|.+|..+++..
T Consensus 98 ~l~~~~~~~~~~~~l~~~~~~~~~~~ 123 (297)
T 2ojh_A 98 LYAISDKVEFGKSAIYLLPSTGGTPR 123 (297)
T ss_dssp EEEEEECTTTSSCEEEEEETTCCCCE
T ss_pred EEEEEEeCCCCcceEEEEECCCCceE
Confidence 55666 2579999999888754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.003 Score=51.82 Aligned_cols=112 Identities=10% Similarity=0.002 Sum_probs=74.7
Q ss_pred CCCEEEEEecCCeEEEEeCC---CCceeEEEecC-------------CCeecceE-e-eCCCeEEecCCCCEEEEEECCC
Q 031361 29 SGDLALVATLNGTVHLVDTK---RGESRWSFSMG-------------KPIYSSFT-R-NDPDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~---tG~~~W~f~t~-------------~~i~ssp~-~-~d~~~~V~~~ddg~Lyald~~t 90 (161)
.+..++.|+.||.|+..|.. +|+..-.++.. ..+..... . .++..++-+..|+.++.+|..+
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 56789999999999999884 66655443311 11111110 1 1345666666788999999999
Q ss_pred CCeeccccCc---ccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 91 GKMKKPSIDV---GEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 91 G~~~~w~~~~---~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
++. ...+.. ...|.+--+..+...++.|+.|+.++..|.++|+.+.++..
T Consensus 202 ~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 202 LER-LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp CCE-EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred Cee-eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence 988 555544 23333322222335578899999999999999999998864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0023 Score=51.36 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=68.9
Q ss_pred CCCEEEEEec-CC--eEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCccc-c
Q 031361 29 SGDLALVATL-NG--TVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-F 103 (161)
Q Consensus 29 ~~~~V~vgs~-DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~ 103 (161)
.+..+++.+. || .||.+|..+|+++-...........+.. .|+..+++...+..+|.+|..+|+. +.-++... .
T Consensus 46 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~ 124 (388)
T 3pe7_A 46 DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE-NVVYQVPAEW 124 (388)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE-EEEEECCTTE
T ss_pred CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc-eeeeechhhc
Confidence 4555666665 77 5999999999987654333222212333 3666666666677999999999987 33233222 2
Q ss_pred eecce-eEeeCCeEEEE-----------------------eeCCEEEEEECCCCcEEEEecC
Q 031361 104 MRRMP-HVWDDGALLLG-----------------------HEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 104 V~ssP-~v~~dg~VyvG-----------------------s~d~~lyalDa~TG~~~W~~~~ 141 (161)
+.... ....|+..+++ ..+..+|.+|.++|+...-...
T Consensus 125 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 186 (388)
T 3pe7_A 125 VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE 186 (388)
T ss_dssp EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred ccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence 22111 12334555543 2457899999999987765543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0019 Score=51.03 Aligned_cols=104 Identities=9% Similarity=-0.020 Sum_probs=72.2
Q ss_pred CCCEEEEEecCCeEEEEe------------------CCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEEC
Q 031361 29 SGDLALVATLNGTVHLVD------------------TKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRK 88 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd------------------~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~ 88 (161)
.+..+++|+.||.|+..| ..+|+.+-++.... ++.+ ... .++..++-+..|+.++.+|.
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG-VCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE-EEECSSSSEEEEEETTTEEEEEEG
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE-EEECCCCCEEEEEeCCCEEEEEEC
Confidence 567899999999999999 45788888886433 3433 333 35556666667889999999
Q ss_pred CCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCC--Cc
Q 031361 89 GIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKS--GG 134 (161)
Q Consensus 89 ~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~T--G~ 134 (161)
.+++. ...+.....-..+.....++.+++.+.|+.++..|..+ |+
T Consensus 232 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 232 DKKMA-VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGK 278 (372)
T ss_dssp GGTTE-EEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTE
T ss_pred CCCce-eEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCce
Confidence 99987 55554443222233344457666666899999988888 64
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0054 Score=53.93 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=74.7
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecCCC-----------eecceEee-CC-CeEEecCCCCEEEEEECCCCCee
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMGKP-----------IYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKMK 94 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~~-----------i~ssp~~~-d~-~~~V~~~ddg~Lyald~~tG~~~ 94 (161)
.+..+|+++. |++|..+|..|++++.++++.+. -..+..+. ++ .+|+-..+++.+..+|..+++..
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l 315 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 315 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 6778999995 89999999999999999987421 01111122 23 45666667789999998877642
Q ss_pred c-cccCcccceecceeEeeCCe-EEEEe-eCCEEEEEECCCCcEEEEecCC
Q 031361 95 K-PSIDVGEFMRRMPHVWDDGA-LLLGH-EKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 95 ~-w~~~~~~~V~ssP~v~~dg~-VyvGs-~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+ .....+..+.. -.++-|+. +|+++ .++++..+|.+||+++..+...
T Consensus 316 ~~~~i~~~~~~~~-~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 316 TVTSIGAAPFLHD-GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp EEEEEECCSSCCC-EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred eeEEeccCcCccC-ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 2 12222222211 12333454 67665 5789999999999999998754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0058 Score=50.93 Aligned_cols=110 Identities=8% Similarity=-0.045 Sum_probs=73.3
Q ss_pred CCCEE-EEEecCCeEEEEeCC--CCceeEEEec---CCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeec-c--cc
Q 031361 29 SGDLA-LVATLNGTVHLVDTK--RGESRWSFSM---GKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKK-P--SI 98 (161)
Q Consensus 29 ~~~~V-~vgs~DG~lyAvd~~--tG~~~W~f~t---~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~-w--~~ 98 (161)
.+..+ +.|+.||.|+..|.. +|+.+-.+.. ...+.+ ... .++..++-+..+|.++.++..+++... . .+
T Consensus 113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~ 191 (450)
T 2vdu_B 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA-ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPI 191 (450)
T ss_dssp TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEE-EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCS
T ss_pred CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceE-EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceee
Confidence 45554 788899999999998 8988887752 233333 222 255555555567899999988887622 0 22
Q ss_pred Ccc-cceecceeEeeC---C-eEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 99 DVG-EFMRRMPHVWDD---G-ALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 99 ~~~-~~V~ssP~v~~d---g-~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
... ..|.+ -....| + .++.|+.|++++..|..+|+.+.++.
T Consensus 192 ~~h~~~v~~-~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 192 LGHVSMLTD-VHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp EECSSCEEE-EEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred ecccCceEE-EEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 222 12222 223333 4 57789999999999999999888754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0035 Score=49.12 Aligned_cols=107 Identities=10% Similarity=-0.025 Sum_probs=64.4
Q ss_pred CCC-EEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGD-LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~-~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++ ++++++.+|.|+.+|..+|...|. ........... .++.+++....++.++.+|+.+|+.+.........-..
T Consensus 38 ~g~~l~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 115 (296)
T 3e5z_A 38 ARSAVIFSDVRQNRTWAWSDDGQLSPEM--HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLN 115 (296)
T ss_dssp GGTEEEEEEGGGTEEEEEETTSCEEEEE--SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEE--CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCC
Confidence 344 677788899999999998833333 22221122222 25677877766678999999999873321111111111
Q ss_pred ---ceeEeeCCeEEE-----Ee-------------eCCEEEEEECCCCcEEEE
Q 031361 107 ---MPHVWDDGALLL-----GH-------------EKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 107 ---sP~v~~dg~Vyv-----Gs-------------~d~~lyalDa~TG~~~W~ 138 (161)
.-++..||.+|+ |+ ..+.+|.+|+. |+....
T Consensus 116 ~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (296)
T 3e5z_A 116 SPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP 167 (296)
T ss_dssp CCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred CCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence 223445688888 54 24689999877 775543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0027 Score=50.00 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=71.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCc--eeEEEecC-CCeecceEee-C--CCeEEecCCCCEEEEEECCCCCee-ccccCcc-
Q 031361 30 GDLALVATLNGTVHLVDTKRGE--SRWSFSMG-KPIYSSFTRN-D--PDFYVDVGEDWKLYFHRKGIGKMK-KPSIDVG- 101 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~--~~W~f~t~-~~i~ssp~~~-d--~~~~V~~~ddg~Lyald~~tG~~~-~w~~~~~- 101 (161)
+..++.|+.||.|+..|..+|+ ....+... .++.. .... + +..++-+..|+.++.+|..++... ...+...
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNS-VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE-EEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEE-EEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 7899999999999999999997 66766543 34443 2332 3 456666667889999998887431 1112111
Q ss_pred cceecceeEe--------------eCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 102 EFMRRMPHVW--------------DDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 102 ~~V~ssP~v~--------------~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
..|.+ .... +...++.|+.|+.++..|.++++..+.
T Consensus 148 ~~v~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 197 (379)
T 3jrp_A 148 IGVNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 197 (379)
T ss_dssp TCEEE-EEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred CceEE-EEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee
Confidence 12222 2221 235688999999999999988875543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0055 Score=49.06 Aligned_cols=102 Identities=8% Similarity=0.089 Sum_probs=60.4
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCC--CCEEEEEECCCCCeeccccCccc-ce
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGE--DWKLYFHRKGIGKMKKPSIDVGE-FM 104 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~d--dg~Lyald~~tG~~~~w~~~~~~-~V 104 (161)
++.+|+.+ .++.|+.+|..+ +..-.+..++...+ ..+ .++.+||.... ...++.++..+|++... ....+ ..
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~g-ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~-~~~~~~~~ 118 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSG-LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL-LTLPDAIF 118 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEE-EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE-EECTTCSC
T ss_pred CCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCcee-EEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE-EeCCCccc
Confidence 56677776 678888888864 44333444332222 122 25567775432 33699999899987332 22211 12
Q ss_pred ecceeEeeCCeEEEEe-eCCEEEEEECCCCc
Q 031361 105 RRMPHVWDDGALLLGH-EKTSVFFVDAKSGG 134 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs-~d~~lyalDa~TG~ 134 (161)
...+++..++.+|+.. .++.+|.+|..+|+
T Consensus 119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 2233444456688776 48899999998875
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.007 Score=46.37 Aligned_cols=110 Identities=8% Similarity=0.033 Sum_probs=71.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEE----ec-CCCeecceEee---CCCeEEecCCCCEEEEEECCCCCee------
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSF----SM-GKPIYSSFTRN---DPDFYVDVGEDWKLYFHRKGIGKMK------ 94 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f----~t-~~~i~ssp~~~---d~~~~V~~~ddg~Lyald~~tG~~~------ 94 (161)
.+..++.|+.||.|+..|..+++..|+. +. ..+|.+ .... |+..++-+..|+.++..|..+++..
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 100 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVA-IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW 100 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEE-EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEE-EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence 5678999999999999999998766655 22 334443 2332 3566666667889999998887420
Q ss_pred --ccccCc-ccceecceeEee--CCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 95 --KPSIDV-GEFMRRMPHVWD--DGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 95 --~w~~~~-~~~V~ssP~v~~--dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
...+.. ...|.+--...+ +..++.|+.|+.++..|..+++.+..+
T Consensus 101 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 101 NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence 112221 122222222222 355889999999999999999865443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0034 Score=50.85 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=62.1
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc----ceec
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE----FMRR 106 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~----~V~s 106 (161)
.++++...++.|+.+|..+|+.. .+..+..+.+-....++.++|.+ ++ .||.+|..+|+..... .... .-..
T Consensus 62 ~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~-~~~~~~~~~~~~ 137 (326)
T 2ghs_A 62 TAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA-ELESDLPGNRSN 137 (326)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE-CSSTTCTTEEEE
T ss_pred EEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe-eCCCCCCCCCCC
Confidence 34455557889999999988764 23334444432223466777776 34 5999999999874332 2111 0112
Q ss_pred ceeEeeCCeEEEEee-------CCEEEEEECCCCcEEE
Q 031361 107 MPHVWDDGALLLGHE-------KTSVFFVDAKSGGMIC 137 (161)
Q Consensus 107 sP~v~~dg~VyvGs~-------d~~lyalDa~TG~~~W 137 (161)
..++..+|.+|+++. .+.+|.+| +|+...
T Consensus 138 ~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~ 173 (326)
T 2ghs_A 138 DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK 173 (326)
T ss_dssp EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE
T ss_pred CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE
Confidence 334555688999885 36899998 576543
|
| >3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0047 Score=56.10 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=72.9
Q ss_pred CEEEEEecC---CeEEEEeCCC---CceeEEEecCC-----CeecceEee---CCCe--EEecC-----CCCEEEEEECC
Q 031361 31 DLALVATLN---GTVHLVDTKR---GESRWSFSMGK-----PIYSSFTRN---DPDF--YVDVG-----EDWKLYFHRKG 89 (161)
Q Consensus 31 ~~V~vgs~D---G~lyAvd~~t---G~~~W~f~t~~-----~i~ssp~~~---d~~~--~V~~~-----ddg~Lyald~~ 89 (161)
.++++|+.- ..+||||..+ .+++|+|.... -..+.|++. ++.+ +++.+ +...||.+|+.
T Consensus 152 rtvLvggmg~GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~ 231 (570)
T 3hx6_A 152 HTVLIGSLRAGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDME 231 (570)
T ss_dssp EEEEEEECTTSCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETT
T ss_pred eEEEEEecCCCCcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECC
Confidence 345566542 2799999765 89999998432 355777654 3444 33333 35689999999
Q ss_pred CCCeeccccCccc-----ceecceeEee-C-----CeEEEEeeCCEEEEEECCCCcE
Q 031361 90 IGKMKKPSIDVGE-----FMRRMPHVWD-D-----GALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 90 tG~~~~w~~~~~~-----~V~ssP~v~~-d-----g~VyvGs~d~~lyalDa~TG~~ 135 (161)
+|.+ .|++++.. -..++|.+.| | ..+|+|...|+|+.+|..+...
T Consensus 232 tG~l-i~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~ 287 (570)
T 3hx6_A 232 TGAI-TRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV 287 (570)
T ss_dssp TCCE-EEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred CCce-EEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence 9999 78776642 2346777653 1 3699999999999999888765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0062 Score=53.87 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=82.1
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
..++.|+.||+|+..|..+++.+-++.... +|.+ ... .++..++-++.|+.+...|..+|+. ...+.....|.+-
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~-v~~spdg~~l~sg~~Dg~i~iwd~~~~~~-~~~~~~~~~v~~~- 608 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVST-VAVSPDGSLCASGGKDGVVLLWDLAEGKK-LYSLEANSVIHAL- 608 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-EEECTTSSEEEEEETTSBCEEEETTTTEE-EECCBCSSCEEEE-
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCce-EEEecCCCcEEEE-
Confidence 578999999999999999999998886433 3433 333 3567777777788999999999987 5555555444432
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
....++.+++++.++.++.-|.++++++.++...
T Consensus 609 ~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 609 CFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp EECSSSSEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred EEcCCCcEEEEEcCCCEEEEECCCCCChhhhccc
Confidence 2334577888888999999999999999888654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0078 Score=50.43 Aligned_cols=105 Identities=14% Similarity=0.179 Sum_probs=68.9
Q ss_pred CCCEEEEEecCC---eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEE-ecCC--CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATLNG---TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYV-DVGE--DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~DG---~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V-~~~d--dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++++.|+ .|+..|..+|+.+- +........++... |+..++ -... +..+|.+|..+|+.++. ...
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l--~~~ 265 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV--TDG 265 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC--CCC
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC--cCC
Confidence 566777788775 99999999999874 33322233344544 555443 2222 34699999999987333 223
Q ss_pred cceecceeEeeCCe-EEEEeeC-C--EEEEEECCCCcEE
Q 031361 102 EFMRRMPHVWDDGA-LLLGHEK-T--SVFFVDAKSGGMI 136 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~d-~--~lyalDa~TG~~~ 136 (161)
.....+|....||. +++++.+ + .+|.+|..+|+..
T Consensus 266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~ 304 (415)
T 2hqs_A 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ 304 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE
Confidence 33455677765664 7777754 3 8999999999854
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.012 Score=45.01 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=72.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCC---------ceeEEEecC-CCeecceEeeC--CCeEEecCCCCEEEEEECCCCCeecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRG---------ESRWSFSMG-KPIYSSFTRND--PDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG---------~~~W~f~t~-~~i~ssp~~~d--~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
.+..++.|+.||.|+..|..++ ++..++... .++.+-....+ +..++-+..|+.++.+|..+++. ..
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~ 148 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD-LR 148 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-TT
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-hc
Confidence 3788999999999999999998 456666543 33443222223 56666666788999999988876 43
Q ss_pred ccCcccceec-----------------ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 97 SIDVGEFMRR-----------------MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 97 ~~~~~~~V~s-----------------sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.+.....+.. +|.-.+...+.+|+.++.+...+..+++.......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL 210 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec
Confidence 3332221111 11111236678899999998888888887444333
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0031 Score=51.56 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CC-CeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.+.++..|+.||.|+..|.++++++-+++... +|.+ ..+. ++ .+++-+++|+.++..|..+|++ ...+.-.+.|.
T Consensus 238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~lasgs~D~~i~iwd~~~~~~-~~~~~H~~~V~ 315 (357)
T 4g56_B 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG-LAYSYHSSPFLASISEDCTVAVLDADFSEV-FRDLSHRDFVT 315 (357)
T ss_dssp STTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE-EEECSSSSCCEEEEETTSCEEEECTTSCEE-EEECCCSSCEE
T ss_pred ccceEEEeecccceeEEECCCCcEeEEEeccceeEEE-EEEcCCCCCEEEEEeCCCEEEEEECCCCcE-eEECCCCCCEE
Confidence 45678889999999999999999999987543 4443 3333 44 4555566788999999999988 33333334444
Q ss_pred cceeE-eeCCeEEEEeeCCEEEEEECCC
Q 031361 106 RMPHV-WDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 106 ssP~v-~~dg~VyvGs~d~~lyalDa~T 132 (161)
+-=.- .+...+..|+.|++++.=|..+
T Consensus 316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 32111 2324566799999998877543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0021 Score=51.78 Aligned_cols=105 Identities=9% Similarity=0.000 Sum_probs=72.5
Q ss_pred CCEEEEEecCC---eEEEEeCCCC-ceeEEEe-c-CCCeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCcc
Q 031361 30 GDLALVATLNG---TVHLVDTKRG-ESRWSFS-M-GKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 30 ~~~V~vgs~DG---~lyAvd~~tG-~~~W~f~-t-~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
...++.++.|| .|+..|.+++ +++..+. . ..++.+ .... ++..++-+..|+.++.+|..+++. ...+...
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-~~~~~~~ 304 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS-LDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-LSQFPAR 304 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE-EEECSSCSSCEEEEESSSEEEEECSSSCCE-EEEEECS
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE-EEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-ceeecCC
Confidence 35899999999 9999999997 6777776 2 334443 3332 556666666788999999999987 4444433
Q ss_pred cceecceeEeeCC--eEEEEeeCCEEEEEECCCCcEE
Q 031361 102 EFMRRMPHVWDDG--ALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 102 ~~V~ssP~v~~dg--~VyvGs~d~~lyalDa~TG~~~ 136 (161)
..-..+-....++ .++.|+.|+.++..|..+++..
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 2222233333333 6778999999999999888743
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.011 Score=45.45 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=69.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
++++-+ ..|++|+.-|..||+.+-.++..+ .|.+-....++..++-++.|+.+...|..+|+. ...++.+.....
T Consensus 36 ~~~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-~~~~~~h~~~~~ 113 (318)
T 4ggc_A 36 GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LRNMTSHSARVG 113 (318)
T ss_dssp TSEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEE
T ss_pred CCEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-EEEecCccceEE
Confidence 455555 469999999999999998887543 243322223556666666788999999999988 444544433222
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
+.... ...+..|+.++.+...+..++...
T Consensus 114 ~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~ 142 (318)
T 4ggc_A 114 SLSWN-SYILSSGSRSGHIHHHDVRVAEHH 142 (318)
T ss_dssp EEEEE-TTEEEEEETTSEEEEEETTSSSCE
T ss_pred EeecC-CCEEEEEecCCceEeeecCCCcee
Confidence 22222 355778888888888887776443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0058 Score=46.56 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=62.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
++.+|+++.++.|+.+|.. |+..+.+...+ .-.....+. ++.+||....++.++.++..++.. ......+..-...
T Consensus 77 ~g~l~v~~~~~~i~~~d~~-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~ 154 (270)
T 1rwi_B 77 AGTVYVTDFNNRVVTLAAG-SNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDG 154 (270)
T ss_dssp TCCEEEEETTTEEEEECTT-CSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCC
T ss_pred CCCEEEEcCCCEEEEEeCC-CceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCcee
Confidence 5678998889999999986 45556654332 111111222 556777665566898887655544 2211111000111
Q ss_pred eeEeeCCeEEEEee-CCEEEEEECCCCcEEE
Q 031361 108 PHVWDDGALLLGHE-KTSVFFVDAKSGGMIC 137 (161)
Q Consensus 108 P~v~~dg~VyvGs~-d~~lyalDa~TG~~~W 137 (161)
-++..++.+|++.. ++.++.+|..+++...
T Consensus 155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 185 (270)
T 1rwi_B 155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVV 185 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEEecCCCceEe
Confidence 12343577998875 6799999988776543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0081 Score=46.51 Aligned_cols=62 Identities=6% Similarity=0.059 Sum_probs=40.4
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeec--ceEe-eCCCeEEecCCCC-EEEEEECCCCCe
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYS--SFTR-NDPDFYVDVGEDW-KLYFHRKGIGKM 93 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~s--sp~~-~d~~~~V~~~ddg-~Lyald~~tG~~ 93 (161)
++.+|+++ .++.|+.+|. +|+.++++...+.... ...+ .++.+||....++ .++.+|+ +|+.
T Consensus 174 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~ 240 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL 240 (286)
T ss_dssp SSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE
T ss_pred CCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCE
Confidence 56788875 4899999997 7888888865432211 1122 2456777665554 8888885 4655
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.011 Score=46.20 Aligned_cols=100 Identities=14% Similarity=0.034 Sum_probs=61.0
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCce-eEEEecCCCeecceEee-CCCeEEecCCC-C--EEEEEECCCCCeeccccCccc
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGES-RWSFSMGKPIYSSFTRN-DPDFYVDVGED-W--KLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~-~W~f~t~~~i~ssp~~~-d~~~~V~~~dd-g--~Lyald~~tG~~~~w~~~~~~ 102 (161)
.+..+|+++. ++.|+.+|..+|++ ..++..+.......... |+..++-..++ + .++.+|..+|+. ...+..+.
T Consensus 50 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~ 128 (331)
T 3u4y_A 50 DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPIPY 128 (331)
T ss_dssp SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEECCT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEECCC
Confidence 4556888877 89999999999998 77777665444323333 44433322223 3 899999999987 44444433
Q ss_pred ceecceeEeeCC-eEEEEeeC-CE-EEEEEC
Q 031361 103 FMRRMPHVWDDG-ALLLGHEK-TS-VFFVDA 130 (161)
Q Consensus 103 ~V~ssP~v~~dg-~VyvGs~d-~~-lyalDa 130 (161)
.. ....+..|| .+|+.+.+ +. ++..|.
T Consensus 129 ~~-~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 129 DA-VGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp TE-EEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred Cc-cceEECCCCCEEEEEecCCCceEEEEEE
Confidence 22 344455455 37766543 55 554443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.017 Score=46.04 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc---e
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF---M 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~---V 104 (161)
.+..++.|+.||+|+..|..+|+.+-+|.... +|.+-....++..++-++.|+.+...|.+...+... ..-.+. +
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~-~~h~~~v~~~ 154 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL-LGHNDWVSQV 154 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE-CCCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-eccCCcEEEE
Confidence 56789999999999999999999998887533 344322222456666666777888888764433111 111112 2
Q ss_pred ecceeEe---eCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 105 RRMPHVW---DDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 105 ~ssP~v~---~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.-+|... +...++.|+.|+.+..-|..+++....+..
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 194 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC
Confidence 2233221 223578899999999999999998887764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.01 Score=48.94 Aligned_cols=112 Identities=6% Similarity=-0.039 Sum_probs=74.9
Q ss_pred CCCCCEEEE--EecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEE-ec-CCCCEEEEEECCCCCeeccccCccc
Q 031361 27 PESGDLALV--ATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYV-DV-GEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 27 ~~~~~~V~v--gs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V-~~-~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
|.....+.+ |+.||+|+..|..+|+...++.....+.+.....++..++ .. ..|+.++.+|..+|+. ...++.+.
T Consensus 286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~-v~~l~gH~ 364 (420)
T 4gga_A 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELKGHT 364 (420)
T ss_dssp TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEECCCS
T ss_pred CCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE-EEEEcCCC
Confidence 335566655 4689999999999999999999988777654444554443 33 3577999999999988 55555432
Q ss_pred -ceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 103 -FMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 103 -~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.|.+- .+. ++..++.|+.|+++..=|..+.....+.+
T Consensus 365 ~~V~~l-~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 365 SRVLSL-TMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp SCEEEE-EECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred CCEEEE-EEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 23332 222 32457789999999988877665554443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.014 Score=48.82 Aligned_cols=111 Identities=13% Similarity=-0.000 Sum_probs=74.0
Q ss_pred CCCCEEEEEec--CC---eEEEEeCCCCceeEEEecCCCeecceEee-CC-CeEEecC---------CCCEEEEEECCCC
Q 031361 28 ESGDLALVATL--NG---TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVG---------EDWKLYFHRKGIG 91 (161)
Q Consensus 28 ~~~~~V~vgs~--DG---~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~-~~~V~~~---------ddg~Lyald~~tG 91 (161)
.....+|+.+. .+ +|+.+|..+|+++=+++++..- ...+. |+ .+||-.. .++.++.+|..++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 45688999885 33 8899999999999888876532 33333 44 3566531 2457899999998
Q ss_pred CeeccccCcc---cc----eecceeEeeC-CeEEEEee--CCEEEEEECCCCcEEEE-ecCC
Q 031361 92 KMKKPSIDVG---EF----MRRMPHVWDD-GALLLGHE--KTSVFFVDAKSGGMICS-HESD 142 (161)
Q Consensus 92 ~~~~w~~~~~---~~----V~ssP~v~~d-g~VyvGs~--d~~lyalDa~TG~~~W~-~~~~ 142 (161)
++ .-...++ +. --....++.| ..+|+.+. ++++..+| +||+++.+ ....
T Consensus 108 ~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~ 167 (373)
T 2mad_H 108 LP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP 167 (373)
T ss_pred cE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC
Confidence 87 3333332 00 0112345434 56898875 47899999 99999988 6553
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.10 E-value=0.011 Score=45.95 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=63.1
Q ss_pred CCCEEEEE--------ecCCeEEEEeCCCCceeEEEec------CCCeecceEeeC-CCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVA--------TLNGTVHLVDTKRGESRWSFSM------GKPIYSSFTRND-PDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vg--------s~DG~lyAvd~~tG~~~W~f~t------~~~i~ssp~~~d-~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
.++.+|++ +.+|.|+.+|..+|+.. ++.. ...+.+-..-.+ +.+||....+ .|+.+|.+ |+.
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~ 103 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTF 103 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCE
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCE
Confidence 35678887 78999999999899875 2322 111221111124 5567766544 79999988 877
Q ss_pred eccccCccc-ce---ecceeEeeCCeEEEEeeC----------------CEEEEEECCCCcEEEE
Q 031361 94 KKPSIDVGE-FM---RRMPHVWDDGALLLGHEK----------------TSVFFVDAKSGGMICS 138 (161)
Q Consensus 94 ~~w~~~~~~-~V---~ssP~v~~dg~VyvGs~d----------------~~lyalDa~TG~~~W~ 138 (161)
......... .- ...-++..+|.+|+++.. +.+|.+|.+ |+....
T Consensus 104 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 332022111 10 112234446889998753 589999977 776543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0044 Score=48.19 Aligned_cols=110 Identities=12% Similarity=-0.003 Sum_probs=62.1
Q ss_pred CCEEEEEecC----------------CeEEEEeCCCCceeEEEecCCCeecceEee-----CC-CeEEecCCCCEEEEEE
Q 031361 30 GDLALVATLN----------------GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-----DP-DFYVDVGEDWKLYFHR 87 (161)
Q Consensus 30 ~~~V~vgs~D----------------G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-----d~-~~~V~~~ddg~Lyald 87 (161)
++.+|+++.. +.|+.+|.. |+............ ..... ++ .+|+....++.++.++
T Consensus 127 ~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~-~i~~~~~~d~dg~~l~v~~~~~~~i~~~~ 204 (314)
T 1pjx_A 127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAETPTKKLWSYD 204 (314)
T ss_dssp TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcc-eEEEecccCCCCCEEEEEECCCCeEEEEE
Confidence 5677777753 678888886 77654433221111 11222 23 2455554556888887
Q ss_pred CC-CCCee----ccccCccc-ceecceeEeeCCeEEEEe-eCCEEEEEECCCCcEEEEecC
Q 031361 88 KG-IGKMK----KPSIDVGE-FMRRMPHVWDDGALLLGH-EKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 88 ~~-tG~~~----~w~~~~~~-~V~ssP~v~~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~ 141 (161)
.. +|+.. ...+.... .....-++..+|.+|++. .++.++.+|++||+.+..+..
T Consensus 205 ~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~ 265 (314)
T 1pjx_A 205 IKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC 265 (314)
T ss_dssp EEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred CCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC
Confidence 65 55431 11111110 011112345568899987 468999999999998777654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.015 Score=44.66 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=69.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ss 107 (161)
.+..++.|+.||+|+..|..+|+.+.+++.......... .++...+-+..++.+...+..++......+.... .+...
T Consensus 78 ~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~-~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (318)
T 4ggc_A 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS-WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 156 (318)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE-EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee-cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEE
Confidence 677899999999999999999999999976543332222 2344555455666777777666544222222222 22222
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
-...++..++.|+.|+.++.-|.++|+.
T Consensus 157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 157 RWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred EEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 2223335577899999999999998874
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0089 Score=47.38 Aligned_cols=103 Identities=12% Similarity=0.025 Sum_probs=60.7
Q ss_pred CCEEE-EEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 30 GDLAL-VATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 30 ~~~V~-vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
++.+| +...++.||.+|..+|+.. .+.....+.+-....++.+++.. +..|+.+|.++|+.+.........-...|
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 100 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRF 100 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCC
Confidence 34444 4556789999999988763 33444444332222356777765 34899999999987333211111111122
Q ss_pred ---eEeeCCeEEEEee------------CCEEEEEECCCCcEE
Q 031361 109 ---HVWDDGALLLGHE------------KTSVFFVDAKSGGMI 136 (161)
Q Consensus 109 ---~v~~dg~VyvGs~------------d~~lyalDa~TG~~~ 136 (161)
++..||.+|+|+. .+.+|.+|+. |+..
T Consensus 101 ~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~ 142 (297)
T 3g4e_A 101 NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK 142 (297)
T ss_dssp EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE
T ss_pred CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE
Confidence 2344688999873 3589999874 5554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0041 Score=48.93 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=69.1
Q ss_pred CCCEEEEEecCCeEEEEeCC--CCceeEEEecC-CCeecceEe-eC--CCeEEecCCCCEEEEEECCCCCee-ccccCcc
Q 031361 29 SGDLALVATLNGTVHLVDTK--RGESRWSFSMG-KPIYSSFTR-ND--PDFYVDVGEDWKLYFHRKGIGKMK-KPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~--tG~~~W~f~t~-~~i~ssp~~-~d--~~~~V~~~ddg~Lyald~~tG~~~-~w~~~~~ 101 (161)
.+..++.|+.||.|+..|.. +++.+.++... .+|.. ... .+ +..++-+..||.++..|..+|+.. ...+...
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 100 (379)
T 3jrp_A 22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH 100 (379)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE-EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEE-EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC
Confidence 56789999999999999887 66777777643 34443 333 23 566666667789999998888621 2222222
Q ss_pred -cceecceeEee--CCeEEEEeeCCEEEEEECCCCc
Q 031361 102 -EFMRRMPHVWD--DGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 102 -~~V~ssP~v~~--dg~VyvGs~d~~lyalDa~TG~ 134 (161)
..|.+--...+ ...+++|+.|+.++..|..+++
T Consensus 101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 22322211122 2568899999999999999884
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.017 Score=45.14 Aligned_cols=73 Identities=11% Similarity=-0.017 Sum_probs=44.3
Q ss_pred CCCeEEecCCCCEEEEEECC-CCCe-ec-cccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 70 DPDFYVDVGEDWKLYFHRKG-IGKM-KK-PSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~-tG~~-~~-w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
|+..++....++.++.++.. +|++ .. -.+......-..-++..||.+|++. ++.++.+|+. |+.+.++.....
T Consensus 182 dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 182 SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC
T ss_pred CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC
Confidence 44444444455688888865 5654 10 0111111111233455578899999 8999999986 999888876543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0058 Score=56.96 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=76.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+.++.+|+.||.|+..|..+++..-++....+|..- .+..+..++-+.+|+.+...|..+|+. ...+...+.|.+--
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l-~fspg~~L~S~s~D~~v~lWd~~~~~~-~~~~~~~~~V~~v~ 105 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEM-RFVKGIYLVVINAKDTVYVLSLYSQKV-LTTVFVPGKITSID 105 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEE-EEETTTEEEEEETTCEEEEEETTTCSE-EEEEECSSCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEE-EEcCCCEEEEEECcCeEEEEECCCCcE-EEEEcCCCCEEEEE
Confidence 5678999999999999999999888776655555542 333355555566788999999999887 44443333333322
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
+.-+...+++|+.|++++..|.+++++.
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 2223356889999999999999999874
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.017 Score=50.60 Aligned_cols=110 Identities=8% Similarity=0.001 Sum_probs=76.3
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccC-------cc
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSID-------VG 101 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~-------~~ 101 (161)
..+..|+.||+++..|..+++.+-++.... .|.+ ..+ .|+..++-++.|+.+...|..+|+. .-.+. .+
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~-v~fspdg~~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS-VRYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAH 238 (611)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSS
T ss_pred eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEE-EEECCCCCEEEEEECCCcEEEEECCCCcE-eeeecccccccccc
Confidence 368999999999999999999888876433 3433 333 3566777777788999999988876 32221 11
Q ss_pred -cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 102 -EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 102 -~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+.|.+--..-+...+..|+.|+++..-|..+|+.+.++...
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 22222111113245778999999999999999998887643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0068 Score=49.31 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=50.1
Q ss_pred CCCEEEEEecCCe-EEEEeCCCCceeEEEec---CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLNGT-VHLVDTKRGESRWSFSM---GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG~-lyAvd~~tG~~~W~f~t---~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
.+..+..|+.||+ |+-.|..+|+.+-+++. ..+|.+-.-..|+..++-+++|+.+...|..++..
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 6778999999998 99999999999999983 44555432223566777777888999999877654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.011 Score=49.58 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=65.8
Q ss_pred CCEEEEEecC------CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCC---CEEEEEECCCCCeeccccC
Q 031361 30 GDLALVATLN------GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGED---WKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 30 ~~~V~vgs~D------G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~dd---g~Lyald~~tG~~~~w~~~ 99 (161)
++.+++.+.+ +.|+..|..+++++--.....++.+ +... |+..++++..+ ..+|.+|..+|+.+...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~-~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-- 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-- 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEE-EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCccee-eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee--
Confidence 4555555554 7999999976555433333444443 4443 66666665544 48999999999884322
Q ss_pred cccceecceeEeeCCe-EE-EEeeCC--EEEEEECCCCcEE
Q 031361 100 VGEFMRRMPHVWDDGA-LL-LGHEKT--SVFFVDAKSGGMI 136 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg~-Vy-vGs~d~--~lyalDa~TG~~~ 136 (161)
....-..+|....||. ++ .++.++ .+|.+|.++|+..
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~ 260 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 260 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE
Confidence 2222455677766664 44 566554 5999999999874
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.011 Score=47.28 Aligned_cols=102 Identities=11% Similarity=-0.067 Sum_probs=65.4
Q ss_pred CCeEEEEeCCCCceeEEEecCCCeecc-----eEe-eCCCeEEecCC-CC--EEEEEECCCCCeeccccCcccceeccee
Q 031361 39 NGTVHLVDTKRGESRWSFSMGKPIYSS-----FTR-NDPDFYVDVGE-DW--KLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~~i~ss-----p~~-~d~~~~V~~~d-dg--~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
+-.++ +|..+|+..-++........+ |.. .|+..+++..+ ++ +||.+|..+|+.+.. .........+|.
T Consensus 10 ~~~~~-~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~ 87 (388)
T 3pe7_A 10 TFDTY-QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-TEGRGDNTFGGF 87 (388)
T ss_dssp CCEEE-ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-CCSSCBCSSSCE
T ss_pred cceEE-ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-eeCCCCCccceE
Confidence 34444 577888888776443322222 443 36665555544 55 699999999988433 333333333567
Q ss_pred EeeCC-eEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 110 VWDDG-ALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 110 v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.+.|+ .+++++.+..+|.+|..+|+....+...
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeeeech
Confidence 76555 5888888999999999999987655443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.013 Score=52.92 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=69.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC---------CCeecceEeeCCC-eEEecCCCCEEEEEECCCCCeecccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG---------KPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~---------~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~ 98 (161)
.++.+++||.+|-|+.+|..+++..+-.... ..|.+-..-.++. ++|+..++ -|+.+|.++|+.+....
T Consensus 366 ~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~-Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 366 KDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG-GLSILHRNSGQVENFNQ 444 (795)
T ss_dssp TTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT-EEEEEETTTCCEEEECT
T ss_pred CCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC-ceeEEeCCCCcEEEeec
Confidence 4688999999999999999998766532211 1233322223567 88887544 69999999998744433
Q ss_pred Ccc----cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEE
Q 031361 99 DVG----EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 99 ~~~----~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W 137 (161)
... ..|. +-+...+|.+++|+. +-|+.+|.++|+...
T Consensus 445 ~~~~l~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 445 RNSQLVNENVY-AILPDGEGNLWLGTL-SALVRFNPEQRSFTT 485 (795)
T ss_dssp TTSCCSCSCEE-EEEECSSSCEEEEES-SCEEEEETTTTEEEE
T ss_pred CCCCcCCCeeE-EEEECCCCCEEEEec-CceeEEeCCCCeEEE
Confidence 211 1121 112233588999998 569999999987643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.021 Score=50.27 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=71.3
Q ss_pred CCCCEEEEEec-CC-----eEEEEeCCCCceeEEEecCCCe------------------------ecceEee-CCCeEEe
Q 031361 28 ESGDLALVATL-NG-----TVHLVDTKRGESRWSFSMGKPI------------------------YSSFTRN-DPDFYVD 76 (161)
Q Consensus 28 ~~~~~V~vgs~-DG-----~lyAvd~~tG~~~W~f~t~~~i------------------------~ssp~~~-d~~~~V~ 76 (161)
..+..+++++. || .|+..|..+|+.+-.+...... ..++... |+..++.
T Consensus 46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~ 125 (741)
T 2ecf_A 46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLF 125 (741)
T ss_dssp TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEE
T ss_pred cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEE
Confidence 35677888887 88 9999999999987666432111 2233433 5665555
Q ss_pred cCCCCEEEEEECCCC---CeeccccCcccceecceeEeeCCe-EEEEeeCCEEEEEECCCCcEEEEe
Q 031361 77 VGEDWKLYFHRKGIG---KMKKPSIDVGEFMRRMPHVWDDGA-LLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 77 ~~ddg~Lyald~~tG---~~~~w~~~~~~~V~ssP~v~~dg~-VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
+.+ +.+|.+|..+| +.+.. .....-...|..+-||. +.+++ ++.+|.+|..+|+.....
T Consensus 126 ~~~-~~i~~~d~~~~~~~~~~~l--~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 126 PLG-GELYLYDLKQEGKAAVRQL--THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EET-TEEEEEESSSCSTTSCCBC--CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred EeC-CcEEEEECCCCCcceEEEc--ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 544 69999999998 55332 22222344566666666 55555 679999999999876543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.032 Score=44.36 Aligned_cols=111 Identities=9% Similarity=0.023 Sum_probs=78.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
+..++.++.||.|+..|..+++..-++... .+|.+-....++..++-++.|+.++..|..+++. ...+...+.|.+--
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~ 244 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA-MYTLSAQDEVFSLA 244 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-EEEEECCSCEEEEE
T ss_pred ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCcEEEEE
Confidence 447999999999999999999988877543 3444322223566777677788999999999887 55555555444322
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
...|+..+..+.++.+...+..++..+..+...
T Consensus 245 -~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 245 -FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp -ECSSSSEEEEEETTEEEEEEETTEEEEEEECCC
T ss_pred -EcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcc
Confidence 233466666666777888888888888777643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=96.90 E-value=0.011 Score=48.64 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=67.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCcee----EEEecCCC-----eecc---eEee-C-CCeEEecC-C---------CCEEEE
Q 031361 30 GDLALVATLNGTVHLVDTKRGESR----WSFSMGKP-----IYSS---FTRN-D-PDFYVDVG-E---------DWKLYF 85 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~----W~f~t~~~-----i~ss---p~~~-d-~~~~V~~~-d---------dg~Lya 85 (161)
++.+++.+.+|.+|.+|..+++.. |+...... .... ..+. | +.+||... + ...++.
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 457788889999999999766532 44322100 0000 1222 3 34676542 1 247999
Q ss_pred EECCCCCeeccccCcccceecceeEeeC-CeEEEEeeCCEEEEEECCCC--cEEEEec
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDD-GALLLGHEKTSVFFVDAKSG--GMICSHE 140 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG--~~~W~~~ 140 (161)
+|..+++. .-.+.++. .. +=+++.| ..+|+++. ++++.+|++|| +++-+..
T Consensus 291 iD~~t~~~-v~~i~~~~-p~-~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 291 MDTKTKQR-VARIPGRD-AL-SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp EETTTTEE-EEEEECTT-CC-EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET
T ss_pred EECCCCcE-EEEEecCC-ee-EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec
Confidence 99999988 55566665 22 2233434 45777776 99999999999 9998864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.015 Score=45.16 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCEEEEE-ecCCeEEEEeCC-CC--ceeEEEecCCCeecceEe-eCCC-eEEecCCCCEEEEEECC--CCCeecc-ccCc
Q 031361 30 GDLALVA-TLNGTVHLVDTK-RG--ESRWSFSMGKPIYSSFTR-NDPD-FYVDVGEDWKLYFHRKG--IGKMKKP-SIDV 100 (161)
Q Consensus 30 ~~~V~vg-s~DG~lyAvd~~-tG--~~~W~f~t~~~i~ssp~~-~d~~-~~V~~~ddg~Lyald~~--tG~~~~w-~~~~ 100 (161)
+..+|++ +.||.|+.+|.. +| +.+..+..+..+.. ... .++. +|+.+.+++.+..++.. +|+.+.. .+..
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQP-MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCC-EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCce-EEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 4567877 779999999884 55 44555655544332 222 2444 56666555788776654 7765222 2222
Q ss_pred ccceecceeEeeCCe-EEEEee-CCEEEEEEC---CCCcEEEEecCCC
Q 031361 101 GEFMRRMPHVWDDGA-LLLGHE-KTSVFFVDA---KSGGMICSHESDN 143 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~-VyvGs~-d~~lyalDa---~TG~~~W~~~~~~ 143 (161)
...+ ....+..|+. +|+++. ++.++.+|. .+++.+..+....
T Consensus 83 ~~~~-~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 129 (343)
T 1ri6_A 83 PGSL-THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 129 (343)
T ss_dssp SSCC-SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT
T ss_pred CCCC-cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC
Confidence 2211 1222343454 777765 788999998 4555666655433
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0053 Score=55.49 Aligned_cols=108 Identities=10% Similarity=0.153 Sum_probs=69.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec----CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccC-c-cc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM----GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSID-V-GE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t----~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~-~-~~ 102 (161)
.++.+++||.++-|+.+|..+++..+-... ...|.+-..-.++.++|+..++ -|+.++.++|+.++.... . ..
T Consensus 372 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~-Gl~~~~~~~~~~~~~~~~~~~~~ 450 (781)
T 3v9f_A 372 GQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLG-NISYYNTRLKKFQIIELEKNELL 450 (781)
T ss_dssp TTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTE-EEEEECSSSCEEEECCSTTTCCC
T ss_pred CCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccC-CEEEEcCCCCcEEEeccCCCCCC
Confidence 358999999999999999987765542111 1123322112256788876544 699999999987544332 1 11
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
.|. +-+...++.+++|+. +-|+.+|.++++.....
T Consensus 451 ~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 451 DVR-VFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHY 485 (781)
T ss_dssp CEE-EEEECTTSEEEEEET-TEEEEEESSSSSCCEEE
T ss_pred eEE-EEEECCCCCEEEEEC-CceEEEeCCCCeEEecc
Confidence 222 122333588999998 67999999999876544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.015 Score=46.70 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=68.4
Q ss_pred CCEEEEEe--cCCeEEEEeCCCCceeEEEecCCCe-------ecce---Eee-C-CCeEEecCCCCEEEEEECCCCCeec
Q 031361 30 GDLALVAT--LNGTVHLVDTKRGESRWSFSMGKPI-------YSSF---TRN-D-PDFYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 30 ~~~V~vgs--~DG~lyAvd~~tG~~~W~f~t~~~i-------~ssp---~~~-d-~~~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
++.+|+++ .++.|+.+| .+|+.++++...+.- ...| ++. + +.+||-...++.+..++..+|+. .
T Consensus 154 ~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~ 231 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-V 231 (329)
T ss_dssp TCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E
T ss_pred CCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-E
Confidence 68888888 489999999 589999998643210 1112 222 3 46677666666888888887877 3
Q ss_pred cccCccc---c---eecce--eEeeCCeEEEE-eeCCEEEEEECCCCcEEEEecC
Q 031361 96 PSIDVGE---F---MRRMP--HVWDDGALLLG-HEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 96 w~~~~~~---~---V~ssP--~v~~dg~VyvG-s~d~~lyalDa~TG~~~W~~~~ 141 (161)
..+.... . +.-+| ++..++.+|++ +.+.+++.+|..+|+++..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~ 286 (329)
T 3fvz_A 232 REIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP 286 (329)
T ss_dssp EEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred EEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence 3332211 1 11223 11112445543 3445899999999999998864
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0092 Score=51.41 Aligned_cols=103 Identities=16% Similarity=0.084 Sum_probs=62.2
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCC----CEEEEEECCCCCeeccccCcccceec
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGED----WKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~dd----g~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+|+...++.+...|..+|++.--..... .++.. .|+..++...++ ..+|.+|..+|+.+.. ........
T Consensus 124 ~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l--~~~~~~~~ 198 (582)
T 3o4h_A 124 VVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF--DSGEGSFS 198 (582)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE--CCSSCEEE
T ss_pred EEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe--ecCCCccc
Confidence 44444444444444555554432222111 23333 366666644433 6799999999988433 33334457
Q ss_pred ceeEeeCCe-EEEEeeCC--EEEEEECCCCcEEEEec
Q 031361 107 MPHVWDDGA-LLLGHEKT--SVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~dg~-VyvGs~d~--~lyalDa~TG~~~W~~~ 140 (161)
+|..+.||. ++.++.++ ++|..|.++|+.. ...
T Consensus 199 ~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~ 234 (582)
T 3o4h_A 199 SASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE 234 (582)
T ss_dssp EEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred cceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence 888887776 55566777 8999999999988 443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.03 Score=48.95 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=75.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec--------CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM--------GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t--------~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.+..+..|+.||+|+..|..+|+.+-++.. .++|.+-.-..|+..++-++.|+.+...|..+|+. .-.+..
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-~~~~~~ 279 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPV 279 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-eeeecC
Confidence 567888999999999999999999887742 22343321223566777777788999999998877 333333
Q ss_pred ccceecce--eEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 101 GEFMRRMP--HVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 101 ~~~V~ssP--~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
+..+.... +..++..+..++.|+.+...|..+|+....+.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 32222111 12234668889999999999999887665543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.03 Score=44.91 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=60.1
Q ss_pred eEEEEeCCCCceeEEEecCCCeec--ceEee-CCCeEEecCCCCEEEEEECCCCCe-eccccCcc------cceeccee-
Q 031361 41 TVHLVDTKRGESRWSFSMGKPIYS--SFTRN-DPDFYVDVGEDWKLYFHRKGIGKM-KKPSIDVG------EFMRRMPH- 109 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~~i~s--sp~~~-d~~~~V~~~ddg~Lyald~~tG~~-~~w~~~~~------~~V~ssP~- 109 (161)
+|+.+|..+|+.+..+..+. +.. ..++. ++.+||-...++.++.+|.. |+. ....+... +.-...|.
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~-~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNL-FYLPHGLSIDTDGNYWVTDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CEEEECTTTCCEEEEECTTT-CSSEEEEEECTTSCEEEEETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred cEEEEECCCCeEEeccCCCc-cCCceEEEECCCCCEEEEECCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcE
Confidence 79999999999987664322 111 11222 45677766556688888764 331 12222110 01112343
Q ss_pred --Eee-CCeEEEEe--eCCEEEEEECCCCcEEEEecCCC
Q 031361 110 --VWD-DGALLLGH--EKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 110 --v~~-dg~VyvGs--~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+.. ++.+|+.. .++.++.+| .+|+.++.+...+
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g 185 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEES 185 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEEC
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCC
Confidence 342 58899877 489999999 7899999987543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.014 Score=44.39 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=57.9
Q ss_pred CCCEEEE-E-ecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALV-A-TLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~v-g-s~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.++.+|+ + +.++.|+.+|..+++. +.+.... .-.....+. ++.+||... ++.++.+|..++....+ .....
T Consensus 33 ~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~--~~~~~- 107 (270)
T 1rwi_B 33 SAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL--PFDGL- 107 (270)
T ss_dssp TTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC--CCCSC-
T ss_pred CCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee--ecCCc-
Confidence 3567888 7 6788999999866553 3332221 111112222 456787766 66899999876554222 21110
Q ss_pred ecce---eEeeCCeEEEEe-eCCEEEEEECCCCcEEE
Q 031361 105 RRMP---HVWDDGALLLGH-EKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 105 ~ssP---~v~~dg~VyvGs-~d~~lyalDa~TG~~~W 137 (161)
..| ++..+|.+|++. .++.++.+|..+++...
T Consensus 108 -~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 108 -NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 143 (270)
T ss_dssp -SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred -CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence 123 234357799875 56789999877766544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.012 Score=53.19 Aligned_cols=106 Identities=9% Similarity=0.006 Sum_probs=67.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe---cCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc-----
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS---MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV----- 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~---t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~----- 100 (161)
.++.+++|+.++.|+.+|..+|+...-.. ....|.+-..-.++.++|+.. + -|+.+|..+++........
T Consensus 416 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~ 493 (781)
T 3v9f_A 416 SEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-A-GVFVIDLASKKVIHHYDTSNSQLL 493 (781)
T ss_dssp TTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-T-EEEEEESSSSSCCEEECTTTSSCS
T ss_pred CCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-C-ceEEEeCCCCeEEecccCcccccc
Confidence 47899999999999999999987553221 112233221122456778775 3 6999999988763322111
Q ss_pred ccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEE
Q 031361 101 GEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W 137 (161)
...|. +-+...+|.+++|+.++-||.+|+++++...
T Consensus 494 ~~~i~-~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 529 (781)
T 3v9f_A 494 ENFVR-SIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK 529 (781)
T ss_dssp CSCEE-EEEECTTCCEEEEESSSCEEEECTTCCEEEE
T ss_pred cceeE-EEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE
Confidence 11222 1223445889999987779999998886543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.021 Score=44.99 Aligned_cols=110 Identities=11% Similarity=-0.067 Sum_probs=63.2
Q ss_pred CCEEEEEec-------CCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCC-CCeeccccC
Q 031361 30 GDLALVATL-------NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGI-GKMKKPSID 99 (161)
Q Consensus 30 ~~~V~vgs~-------DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~t-G~~~~w~~~ 99 (161)
++.+|+++. ++.||.+|..+|+..--...... ....... |+. +|+....++.++.+|..+ |+. ...+.
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-~~~~~ 222 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV-ANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-IQPFG 222 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS-EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-EEEEE
T ss_pred CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc-ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-ccccc
Confidence 567888876 37889998877765432211111 1122222 444 566554456899998763 543 11111
Q ss_pred ------ccc-ceecceeEeeCCeEEEEee-CCEEEEEECCCCcEEEEecCC
Q 031361 100 ------VGE-FMRRMPHVWDDGALLLGHE-KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 100 ------~~~-~V~ssP~v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~ 142 (161)
... .....-++..+|.+|++.. ++.++.+|+ +|+.+..+...
T Consensus 223 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 223 ATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp EEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred ceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 000 0111123455688999875 578999998 78888888654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.026 Score=47.26 Aligned_cols=108 Identities=15% Similarity=0.070 Sum_probs=68.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCce----eEEEecCCCe-------ecc-eEee-C-CCeEEecCC---------CCEEEEE
Q 031361 30 GDLALVATLNGTVHLVDTKRGES----RWSFSMGKPI-------YSS-FTRN-D-PDFYVDVGE---------DWKLYFH 86 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~----~W~f~t~~~i-------~ss-p~~~-d-~~~~V~~~d---------dg~Lyal 86 (161)
++.+++.+.+|.++.+|..++.. .|.+.++... ... ..+. | +.+||...+ ++.++.+
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 45666667899999999987643 3444332110 000 0111 2 356775431 3479999
Q ss_pred ECCCCCeeccccCcccceecceeEeeCC--eEEEEe-eCCEEEEEECCCCcEEEEe
Q 031361 87 RKGIGKMKKPSIDVGEFMRRMPHVWDDG--ALLLGH-EKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 87 d~~tG~~~~w~~~~~~~V~ssP~v~~dg--~VyvGs-~d~~lyalDa~TG~~~W~~ 139 (161)
|..++++ .-.+.+++. -....++.|| .+|++. .++.++.+|++|++++-+.
T Consensus 304 D~~t~~v-v~~i~~g~~-p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 304 TGLVGQT-SSQISLGHD-VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCEE-EEEEECCCC-cCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999988 444455542 2233344455 478877 4899999999999999884
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.016 Score=44.88 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=62.4
Q ss_pred CCCEEEEEecC-CeEEEEeCC--CCce--eEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCee--ccccC
Q 031361 29 SGDLALVATLN-GTVHLVDTK--RGES--RWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMK--KPSID 99 (161)
Q Consensus 29 ~~~~V~vgs~D-G~lyAvd~~--tG~~--~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~--~w~~~ 99 (161)
.+..+|+++.+ |.|+..|.. +|+. +-++.....+.. .... ++. +|+...+++.++.+|..+|... ...+.
T Consensus 48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 126 (343)
T 1ri6_A 48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH-ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 126 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE-EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcE-EEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc
Confidence 56678888887 899886655 7763 355554442222 2222 444 5566666778888887444321 22222
Q ss_pred cccceecceeEeeCC-eEEEEe-eCCEEEEEECCC-CcEE
Q 031361 100 VGEFMRRMPHVWDDG-ALLLGH-EKTSVFFVDAKS-GGMI 136 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg-~VyvGs-~d~~lyalDa~T-G~~~ 136 (161)
....+ ....+..|+ .+|+++ .++.++.+|..+ |++.
T Consensus 127 ~~~~~-~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 127 GLDGC-HSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CCTTB-CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CCCCc-eEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 22222 223344344 588887 899999999888 8764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.79 E-value=0.027 Score=44.52 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=42.2
Q ss_pred eEEecCCCCEEEEEEC--CCCCeec--cccCcccceecce---eEeeCCeEEEEee-CCEEEEEECCCCcEEEEecCC
Q 031361 73 FYVDVGEDWKLYFHRK--GIGKMKK--PSIDVGEFMRRMP---HVWDDGALLLGHE-KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 73 ~~V~~~ddg~Lyald~--~tG~~~~--w~~~~~~~V~ssP---~v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~ 142 (161)
+|+....++.++.++. .+|++.. ...+... -...| ++..+|.+|++.. ++.++.+|++||+++-.+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 4554444557877764 6775411 0111110 01223 3455688999986 467999999999999888765
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.03 Score=46.13 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
++++-+| .|++||.-|..||+..-.++..+ .|.+ ... .|+..++-+..||.+...|..+|+. ...+..+..-.
T Consensus 116 ~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~s-v~fspdg~~lasgs~Dg~v~iWd~~~~~~-~~~~~~h~~~v 192 (420)
T 4gga_A 116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISS-VAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LRNMTSHSARV 192 (420)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCE
T ss_pred CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEE-EEECCCCCEEEEEECCCeEEEEEcCCCcE-EEEEeCCCCce
Confidence 4555555 59999999999999998887543 2433 333 3566666566778999999999988 44444433222
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCc
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~ 134 (161)
.+ +..+...+..|+.|+.++..|..+..
T Consensus 193 ~~-~s~~~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 193 GS-LSWNSYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp EE-EEEETTEEEEEETTSEEEEEETTSSS
T ss_pred EE-EeeCCCEEEEEeCCCceeEeeecccc
Confidence 22 22333557789999999999977644
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.015 Score=51.19 Aligned_cols=107 Identities=11% Similarity=0.045 Sum_probs=69.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCC---ceeEEEecC-CCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRG---ESRWSFSMG-KPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG---~~~W~f~t~-~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
.+..+++++. +.|+.+|..+| +.. ++... ..+. .+.. .|+..+++..++ .+|.+|..+|+.++....-.+.
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~-~~~~SPDG~~la~~~~~-~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFAT-DAKLSPKGGFVSFIRGR-NLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEE-EEEECTTSSEEEEEETT-EEEEEETTTTEEEECCCCCCSS
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccc-cccCCCCCCEEEEEeCC-cEEEEecCCCCEEEeccCCccc
Confidence 5556666664 99999999998 543 33222 3333 3343 366666666544 9999999999875543332222
Q ss_pred e---------------ecceeEeeCCe-EEEEeeCC---------------------------------EEEEEECCC-C
Q 031361 104 M---------------RRMPHVWDDGA-LLLGHEKT---------------------------------SVFFVDAKS-G 133 (161)
Q Consensus 104 V---------------~ssP~v~~dg~-VyvGs~d~---------------------------------~lyalDa~T-G 133 (161)
+ ..++..+-||. +++++.|+ .++.+|..+ |
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 2 25566665554 77777665 899999999 8
Q ss_pred cEEEEe
Q 031361 134 GMICSH 139 (161)
Q Consensus 134 ~~~W~~ 139 (161)
+.....
T Consensus 275 ~~~~~~ 280 (741)
T 2ecf_A 275 QTQWID 280 (741)
T ss_dssp CCEEEC
T ss_pred ceEEec
Confidence 876543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.021 Score=49.57 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=74.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCc----eeEEEecCCCeec--c------eEee-C-CCeEEecCC---------CCEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGE----SRWSFSMGKPIYS--S------FTRN-D-PDFYVDVGE---------DWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~----~~W~f~t~~~i~s--s------p~~~-d-~~~~V~~~d---------dg~Lya 85 (161)
.++.+++.+..|++|.+|..+++ ..|+..+...+.. . ..+. | +.+||...+ ++.+..
T Consensus 275 dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV 354 (426)
T 3c75_H 275 RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV 354 (426)
T ss_dssp TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence 45778888999999999997765 3466543222110 0 1111 2 346775421 247999
Q ss_pred EECCCCCeeccccCcccceecceeEeeCC--eEEEEe-eCCEEEEEECCCCcEEEEecCCCCCCC
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDDG--ALLLGH-EKTSVFFVDAKSGGMICSHESDNSAST 147 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~dg--~VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~~~ 147 (161)
+|..|++. .-++.+++.-.+- .+..|+ .+|+.. .++.+..||.+|++++.+....+..++
T Consensus 355 ID~~T~kv-v~~I~vg~~P~gi-a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~ 417 (426)
T 3c75_H 355 LNAETGER-INKIELGHEIDSI-NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQ 417 (426)
T ss_dssp EETTTCCE-EEEEEEEEEECEE-EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCC
T ss_pred EECCCCeE-EEEEECCCCcCeE-EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCc
Confidence 99999998 5556665532222 233344 578887 489999999999999999844444333
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=48.52 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=72.9
Q ss_pred CCCCEEEEEe------cCCeEEEEeCCCCceeEEEecCCCeecceEee-CC-CeEEecC---------CCCEEEEEECCC
Q 031361 28 ESGDLALVAT------LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVG---------EDWKLYFHRKGI 90 (161)
Q Consensus 28 ~~~~~V~vgs------~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~-~~~V~~~---------ddg~Lyald~~t 90 (161)
.....+|+.+ .|+.+|.+|..+|+++=+++.+..- ..++. |+ .+|+... .++.+..+|..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3557899986 4789999999999998888765421 22333 33 3566431 244699999999
Q ss_pred CCeeccccCccc--c-eeccee---EeeC-CeEEEEee--CCEEEEEECCCCcEEEE-ecC
Q 031361 91 GKMKKPSIDVGE--F-MRRMPH---VWDD-GALLLGHE--KTSVFFVDAKSGGMICS-HES 141 (161)
Q Consensus 91 G~~~~w~~~~~~--~-V~ssP~---v~~d-g~VyvGs~--d~~lyalDa~TG~~~W~-~~~ 141 (161)
++. .-.+.+.. . ....|. ++.| ..+|+.+. ++++..+|.++++++.+ ...
T Consensus 91 ~~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 91 LTF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp CCE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred CcE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 887 33333321 0 112232 3333 46898875 57899999999999887 543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.067 Score=45.08 Aligned_cols=108 Identities=12% Similarity=0.178 Sum_probs=71.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcc-ccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ 105 (161)
.+..+..++.||.|+..|. +|+.+.++.... ++.+ ... .|+..++-+.+|+.++..|. +|+. ...+... ..|.
T Consensus 396 dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~-~~~s~d~~~l~~~~~d~~v~~w~~-~~~~-~~~~~~~~~~v~ 471 (577)
T 2ymu_A 396 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG-VAFSPDDQTIASASDDKTVKLWNR-NGQL-LQTLTGHSSSVR 471 (577)
T ss_dssp TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEE-EEECTTSSEEEEEETTSEEEEEET-TSCE-EEEEECCSSCEE
T ss_pred CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEE-EEECCCCCEEEEEcCCCEEEEEEC-CCCE-EEEEcCCCCCEE
Confidence 4667889999999999995 788888876543 3433 233 35566666667889988885 5555 2233222 2232
Q ss_pred cceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 106 RMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 106 ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+ -.+..| ..+..|+.|+.++.-| .+|+.+.++...
T Consensus 472 ~-~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h 507 (577)
T 2ymu_A 472 G-VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 507 (577)
T ss_dssp E-EEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECC
T ss_pred E-EEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCC
Confidence 2 122223 4567899999999999 689999888653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.033 Score=44.90 Aligned_cols=110 Identities=15% Similarity=0.020 Sum_probs=62.7
Q ss_pred CCEEEEEec-------CCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECC--CC-Cee---
Q 031361 30 GDLALVATL-------NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKG--IG-KMK--- 94 (161)
Q Consensus 30 ~~~V~vgs~-------DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~--tG-~~~--- 94 (161)
++.+|+++. .+.||.+| +|+..--.. +.......... |+. +|+....++.++.++.. +| ++.
T Consensus 144 ~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~ 220 (326)
T 2ghs_A 144 SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 220 (326)
T ss_dssp TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCce
Confidence 566788875 37889888 576543221 11122222332 443 55554456689999875 77 431
Q ss_pred cc-ccCcccceecceeEeeCCeEEEEee-CCEEEEEECCCCcEEEEecCCC
Q 031361 95 KP-SIDVGEFMRRMPHVWDDGALLLGHE-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 95 ~w-~~~~~~~V~ssP~v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.+ .+.........-++..+|.+|++.. ++.++.+|+ +|+.+..+....
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC
Confidence 11 1110111111223455688999986 478999998 799888776543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.016 Score=48.08 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCc----c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDV----G 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~----~ 101 (161)
.+..++.|+.||.|+..|.+ |+.+++++.. .+|.+ .... ++. .++-++.|+.+..+|..+++. .-.+.. .
T Consensus 220 ~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~-v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~ 296 (435)
T 4e54_B 220 SSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH-VALNPCCDWFLATASVDQTVKIWDLRQVRG-KASFLYSLPHR 296 (435)
T ss_dssp TTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE-EEECTTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBCCBCS
T ss_pred CCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEe-eeecCCCceEEEEecCcceeeEEecccccc-cceEEEeeecc
Confidence 56789999999999999984 7788887653 34443 3332 333 455556777888889887765 222211 1
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
..|.+--+--++..++.|+.|+.++.-|..+|+.......
T Consensus 297 ~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp SCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred ccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence 2233221112335678899999999999999998777643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.016 Score=52.47 Aligned_cols=109 Identities=10% Similarity=0.144 Sum_probs=69.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-------CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-------KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV- 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-------~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~- 100 (161)
.++.+++||.+|-|+.+|..+++..+-.... ..|.+-..-.++.++|+..++ -|+.++..+++.+......
T Consensus 319 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~-Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 319 SQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDG-GLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp TTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSS-CEEEECTTTCCEEEECCC--
T ss_pred CCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCC-CeEEEcCCCCcEEEEecCCC
Confidence 4788999999999999999877654322211 112221111245788887544 5899999988774433221
Q ss_pred ------c-cceecceeEeeCCe-EEEEeeCCEEEEEECCCCcEEEEec
Q 031361 101 ------G-EFMRRMPHVWDDGA-LLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 101 ------~-~~V~ssP~v~~dg~-VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
. ..|. +-+...++. +++|+.++-|+.+|.++|+.. .+.
T Consensus 398 ~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~ 443 (795)
T 4a2l_A 398 ESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFN 443 (795)
T ss_dssp ----CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTTCCEE-EEC
T ss_pred CcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-Eee
Confidence 1 1121 222344588 999999899999999998754 443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.025 Score=49.57 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=70.8
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCC-----CCeeccccCcccce
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGI-----GKMKKPSIDVGEFM 104 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~t-----G~~~~w~~~~~~~V 104 (161)
+.++++ .|+.|+..|..+|+++-.......+. ++... |+..+++. .+++||.+|..+ |+.++....-...+
T Consensus 93 ~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 93 GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred CeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 555555 57999999999998865554444443 34443 66666665 456999999998 88744433322223
Q ss_pred -------------ecceeEeeCCe-EEEEe---------------------------------eCCEEEEEECCCCcEEE
Q 031361 105 -------------RRMPHVWDDGA-LLLGH---------------------------------EKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 105 -------------~ssP~v~~dg~-VyvGs---------------------------------~d~~lyalDa~TG~~~W 137 (161)
..++..+.||. +++++ .+..++.+|.++|+..+
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 35666665554 66666 34689999999999876
Q ss_pred Ee
Q 031361 138 SH 139 (161)
Q Consensus 138 ~~ 139 (161)
..
T Consensus 250 ~~ 251 (706)
T 2z3z_A 250 LQ 251 (706)
T ss_dssp CC
T ss_pred ec
Confidence 54
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.066 Score=45.13 Aligned_cols=108 Identities=11% Similarity=0.143 Sum_probs=72.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcc-ccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ 105 (161)
.+..+..++.||.|+..|. +|+.+-++.... ++.+ ..+ .|+..++-+.+|+.++..|. +|+. ...+..+ ..|.
T Consensus 437 d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~-~~~spd~~~las~~~d~~i~iw~~-~~~~-~~~~~~h~~~v~ 512 (577)
T 2ymu_A 437 DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG-VAFSPDGQTIASASDDKTVKLWNR-NGQL-LQTLTGHSSSVR 512 (577)
T ss_dssp TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE-EEECTTSCEEEEEETTSEEEEEET-TSCE-EEEEECCSSCEE
T ss_pred CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE-EEEcCCCCEEEEEeCCCEEEEEcC-CCCE-EEEEeCCCCCEE
Confidence 5678889999999999996 788888776533 3433 233 35666666667889998884 6766 3334332 2232
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+--+..+...+..|+.|+.++.-| .+|+.+.++..
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd-~~~~~~~~~~~ 547 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 547 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEECcCEEEEEe-CCCCEEEEEcC
Confidence 211112324577899999999999 58998888764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.017 Score=49.77 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=67.5
Q ss_pred CCCEEEEEecC----CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCC--EEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATLN----GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDW--KLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~D----G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg--~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++++.| +.||.+|..+|+++ ++........+|... |+..++.+..++ .||.+|..+|+. + .+.-.
T Consensus 160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~-~-~~~~~ 236 (582)
T 3o4h_A 160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV-E-DLELP 236 (582)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE-E-ECCCS
T ss_pred CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE-E-EccCC
Confidence 56667777777 78999999999987 443333333555554 566555555666 899999999988 4 33333
Q ss_pred cceeccee--------EeeCCeEE-EEeeCCEEEEEECCCCcEE
Q 031361 102 EFMRRMPH--------VWDDGALL-LGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 102 ~~V~ssP~--------v~~dg~Vy-vGs~d~~lyalDa~TG~~~ 136 (161)
+.-..+|. .+.||.++ .++.++++...+. |+..
T Consensus 237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 22233455 66666554 5778888777776 6554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.57 E-value=0.06 Score=44.63 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=66.9
Q ss_pred CCEEEEEecCCeEEEEeCCCCce-eEE------EecC-CCeecceEee--CCCeEEecCCCCEEEEEECCCCC---eecc
Q 031361 30 GDLALVATLNGTVHLVDTKRGES-RWS------FSMG-KPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGK---MKKP 96 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~-~W~------f~t~-~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~---~~~w 96 (161)
.+.++.|+.||.|+..|..++.. .+. +... .++.. .... ++..++-+.+++.++.+|.+++. . ..
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~-~~ 271 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED-VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP-SH 271 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEE-EEECSSCTTEEEEEETTSEEEEEETTCSCSSSC-SE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEee-eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc-ee
Confidence 44899999999999999988543 222 2211 22322 2222 34566666678899999998873 3 33
Q ss_pred ccCccc-ceecceeEeeCC--eEEEEeeCCEEEEEECCC-CcEEEEecC
Q 031361 97 SIDVGE-FMRRMPHVWDDG--ALLLGHEKTSVFFVDAKS-GGMICSHES 141 (161)
Q Consensus 97 ~~~~~~-~V~ssP~v~~dg--~VyvGs~d~~lyalDa~T-G~~~W~~~~ 141 (161)
.+.... .|.+ -....++ .++.|+.|+.++..|.++ ++.+..+..
T Consensus 272 ~~~~~~~~v~~-i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 272 TVDAHTAEVNC-LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp EEECCSSCEEE-EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred EeecCCCCeEE-EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence 332221 2222 1122223 466899999999999998 555666553
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.025 Score=44.77 Aligned_cols=103 Identities=11% Similarity=-0.037 Sum_probs=59.6
Q ss_pred EEEEEecCCeEEEEeCCCCc-eeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec---
Q 031361 32 LALVATLNGTVHLVDTKRGE-SRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR--- 106 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~-~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s--- 106 (161)
+++++..+|.|+.+|. +|+ ..|... ......... .++.+++....++.|+.++.. |+...........-..
T Consensus 59 l~~~d~~~~~i~~~~~-~g~~~~~~~~--~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRE-DGTVDVLLDA--TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp EEEEETTTTEEEEEET-TSCEEEEEES--CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred EEEEECCCCEEEEEeC-CCCEEEEeCC--CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 5566667888888888 455 333332 221222222 255677765555689888875 7763332111111111
Q ss_pred ceeEeeCCeEEE-----Eee-------------CCEEEEEECCCCcEEEE
Q 031361 107 MPHVWDDGALLL-----GHE-------------KTSVFFVDAKSGGMICS 138 (161)
Q Consensus 107 sP~v~~dg~Vyv-----Gs~-------------d~~lyalDa~TG~~~W~ 138 (161)
..++..||.+|+ |+. .+.+|.+|+++|+....
T Consensus 135 ~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 135 DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 234555688999 553 36899999999987643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.037 Score=45.85 Aligned_cols=108 Identities=15% Similarity=0.020 Sum_probs=66.8
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-ee-cceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcc-c
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IY-SSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-E 102 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~-ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~ 102 (161)
|..+..++.|+.||+|...|.+++........... +. .+... .++..++-+..||.++.+|... +. ...+... +
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~-~~~~~~h~~ 251 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KE-LWNLRMHKK 251 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CB-CCCSBCCSS
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ce-eEEEecccc
Confidence 34567999999999999999987766554433221 11 12222 2556666666788999999764 44 3334332 2
Q ss_pred ceecceeE-eeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 103 FMRRMPHV-WDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 103 ~V~ssP~v-~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
.|.+--+. .++..+..|+.|+.+..-|..+++..
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~ 286 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 286 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEeccccccc
Confidence 33321111 11234667999999999998887644
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=96.49 E-value=0.14 Score=40.84 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=69.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc---Ccccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI---DVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~---~~~~~V 104 (161)
.+..++.|+.||+|+..|.++|+.+-++... .+|.+-....++..++-++.|+.+...|...... .... .-.+.|
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v 165 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDWV 165 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSCE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCcee
Confidence 4678889999999999999999999988753 3444322223556666666777888888763222 1111 011112
Q ss_pred e---cceeEe-------eCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 105 R---RMPHVW-------DDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 105 ~---ssP~v~-------~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
. -+|... ....+..|+.|++++..| .+++....+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~ 211 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKA 211 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEEC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcC
Confidence 1 122210 013577899999999999 56666666543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.46 E-value=0.06 Score=44.61 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=66.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCC---ceeEEEecCC-CeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRG---ESRWSFSMGK-PIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG---~~~W~f~t~~-~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
..+..++.++.||.|+..|.+++ +++++++... ++. +.... ++. .++-+..||.+..+|.++++.....+..+
T Consensus 242 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 242 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN-CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE-EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE-EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 35678889999999999999998 6888886543 333 23333 333 56555677899999988754313333322
Q ss_pred -cceecceeEeeCC--eEEEEeeCCEEEEEECCC
Q 031361 102 -EFMRRMPHVWDDG--ALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 102 -~~V~ssP~v~~dg--~VyvGs~d~~lyalDa~T 132 (161)
..|.+ -....++ .+..|+.|+.++..|..+
T Consensus 321 ~~~v~~-i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 321 KDEIFQ-VQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp SSCEEE-EEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCEEE-EEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 22222 1222223 466788999999999877
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.061 Score=40.21 Aligned_cols=105 Identities=12% Similarity=0.038 Sum_probs=63.0
Q ss_pred CCCEEEEEecCCeEEEEeCCC-CceeEEEecCC-CeecceEee-CCCeEEecC----CCCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATLNGTVHLVDTKR-GESRWSFSMGK-PIYSSFTRN-DPDFYVDVG----EDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~t-G~~~W~f~t~~-~i~ssp~~~-d~~~~V~~~----ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..++++ .++.|+.+|..+ |++.-.+.... .....+... |+..++.+. ....||.++..+++.+.+...
T Consensus 52 dg~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 128 (297)
T 2ojh_A 52 DGKYLLLN-SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-- 128 (297)
T ss_dssp TSSEEEEE-ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS--
T ss_pred CCCEEEEE-cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC--
Confidence 44555555 499999999999 87764443321 222233433 555555444 246899999888876443322
Q ss_pred cceecceeEeeCCe-EE-EEeeCC--EEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDGA-LL-LGHEKT--SVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-Vy-vGs~d~--~lyalDa~TG~~~W 137 (161)
.. ...+....|+. ++ .++.++ .+|.+|..+|+...
T Consensus 129 ~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 129 LP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp SS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CC-ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 22 33445554453 44 677777 78888888887653
|
| >3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.037 Score=50.24 Aligned_cols=108 Identities=8% Similarity=0.045 Sum_probs=70.6
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCC---eecceEe-eCCCeEE--e-------------cCCCCEEEEEECCC
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKP---IYSSFTR-NDPDFYV--D-------------VGEDWKLYFHRKGI 90 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~---i~ssp~~-~d~~~~V--~-------------~~ddg~Lyald~~t 90 (161)
++.+.+++. ..++-+|. .|+++|+++.... .+..... .+++..| . ..+| .++-+| .|
T Consensus 217 nG~l~~g~G-~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD-~I~EVD-~t 292 (571)
T 3elq_A 217 RGTFTAVQG-QHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRD-HILEVD-KS 292 (571)
T ss_dssp TSCEEEEEB-TEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSC-EEEEEC-TT
T ss_pred CCCEEEecC-cEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceecc-EEEEEC-CC
Confidence 344444432 35899999 7999999988653 2222322 2444433 1 1133 788999 99
Q ss_pred CCeeccccCcccceec---------------------------c-----ee-----------------Ee---eCCeEEE
Q 031361 91 GKMKKPSIDVGEFMRR---------------------------M-----PH-----------------VW---DDGALLL 118 (161)
Q Consensus 91 G~~~~w~~~~~~~V~s---------------------------s-----P~-----------------v~---~dg~Vyv 118 (161)
|++ .|.+.+.+-+.. + |+ +. +|+.+++
T Consensus 293 GeV-v~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~li 371 (571)
T 3elq_A 293 GRV-VDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIIL 371 (571)
T ss_dssp SCE-EEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEE
T ss_pred CCE-EEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEE
Confidence 999 887766543321 0 11 11 2356889
Q ss_pred EeeCCEEEEEECCCCcEEEEecCCC
Q 031361 119 GHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 119 Gs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.++...+++||. ||+++|+.....
T Consensus 372 SsR~~~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 372 SSRHQGVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp EETTTEEEEEET-TSCEEEEESCST
T ss_pred ECCccEEEEEcC-CCcEEEEECCCC
Confidence 998889999996 999999998775
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.12 Score=45.66 Aligned_cols=113 Identities=14% Similarity=0.073 Sum_probs=74.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccC--c-ccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSID--V-GEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~--~-~~~V 104 (161)
.+..++.|+.||+|+..|..+|+...++... .+|.+-....++..++-++.|+.+...|............ . ...|
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 5678999999999999999999999988653 3444322223556666666777888887654332111110 0 1112
Q ss_pred ecceeEee--CCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 105 RRMPHVWD--DGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 105 ~ssP~v~~--dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.+.-...+ ...++.|+.|++++.-|..+++....+..
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~ 559 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG 559 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 22111111 13578899999999999999999888764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.026 Score=45.04 Aligned_cols=106 Identities=10% Similarity=0.070 Sum_probs=61.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCce-eEEEecCC---------------Ceecce---Eee--CCCeEEecCCCCEEEEEEC
Q 031361 30 GDLALVATLNGTVHLVDTKRGES-RWSFSMGK---------------PIYSSF---TRN--DPDFYVDVGEDWKLYFHRK 88 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~-~W~f~t~~---------------~i~ssp---~~~--d~~~~V~~~ddg~Lyald~ 88 (161)
+.++|+++.+|.|+.+|..+++. .|...... +....| .+. ++.+||..... .++.+|.
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~-~i~~~d~ 108 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYY-HLSVVGS 108 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTT-EEEEECT
T ss_pred CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCC-CEEEEeC
Confidence 34599999999999999987754 35432110 000112 222 34567664443 4888887
Q ss_pred CCCCeeccccCcccceecce---eEee-CCeEEEEeeC------------------CEEEEEECCCCcEE
Q 031361 89 GIGKMKKPSIDVGEFMRRMP---HVWD-DGALLLGHEK------------------TSVFFVDAKSGGMI 136 (161)
Q Consensus 89 ~tG~~~~w~~~~~~~V~ssP---~v~~-dg~VyvGs~d------------------~~lyalDa~TG~~~ 136 (161)
.+|+...+.-...+.-...| ++.. +|.+||+... +.+|.+|+++|+..
T Consensus 109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 77755222111111101123 2444 6889998643 78999999988764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=52.36 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=69.0
Q ss_pred CCCEEEEEecCCeEEEEeCC--CCceeEEEecC-CCeecceEe-eC--CCeEEecCCCCEEEEEECCCCCee-ccccC-c
Q 031361 29 SGDLALVATLNGTVHLVDTK--RGESRWSFSMG-KPIYSSFTR-ND--PDFYVDVGEDWKLYFHRKGIGKMK-KPSID-V 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~--tG~~~W~f~t~-~~i~ssp~~-~d--~~~~V~~~ddg~Lyald~~tG~~~-~w~~~-~ 100 (161)
.+..++.|+.||.|+..|.. +++...++... ++|.+ ... .+ +..++-++.||.++..|..+|+.. ...+. -
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~-l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h 98 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH 98 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEE-EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEE-EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC
Confidence 46789999999999999887 56677777643 34443 233 34 566666667889999998888520 12222 1
Q ss_pred ccceecceeEee--CCeEEEEeeCCEEEEEECCCCc
Q 031361 101 GEFMRRMPHVWD--DGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 101 ~~~V~ssP~v~~--dg~VyvGs~d~~lyalDa~TG~ 134 (161)
...|.+-=...+ ...+++|+.|+.++..|..+++
T Consensus 99 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 222332211122 3568899999999999999883
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0029 Score=50.62 Aligned_cols=107 Identities=10% Similarity=0.024 Sum_probs=59.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCC--ceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCC---eeccccCccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRG--ESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGK---MKKPSIDVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG--~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~---~~~w~~~~~~ 102 (161)
.+..++.|+.||.|+..|..++ +.+-+++.. .+|..-....++..++-+..|+.++..|..+++ .......-.+
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence 5678888999999999999988 566666532 334432222355666666677889988988877 1011111122
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
.|.+-=...++..++.|+.|+.++..|.++++.
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred ceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 222211111335688999999999999998873
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0064 Score=48.53 Aligned_cols=105 Identities=11% Similarity=0.020 Sum_probs=60.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCce---eEEEec--CCCeecceEeeCCCeEEecCCCCEEEEEECCCCC-----------
Q 031361 29 SGDLALVATLNGTVHLVDTKRGES---RWSFSM--GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGK----------- 92 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~---~W~f~t--~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~----------- 92 (161)
.+..++.++.||.|+..|..+++. .=++.. ..++.+-....++..++-+..|+.++.+|..+++
T Consensus 111 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 190 (377)
T 3dwl_C 111 NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWG 190 (377)
T ss_dssp TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSC
T ss_pred CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccc
Confidence 567899999999999999999885 334443 2334332112255666666677788888875332
Q ss_pred -------eeccccCcccceecceeEeeC-CeEEEEeeCCEEEEEECCCCcE
Q 031361 93 -------MKKPSIDVGEFMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 93 -------~~~w~~~~~~~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~ 135 (161)
. ...+.-...|.+ -....| ..++.|+.|+.++..|..+|+.
T Consensus 191 ~~~~~~~~-~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 191 SRLPFNTV-CAEYPSGGWVHA-VGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SCCCEEEE-EECCCCSSSEEE-EEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred cccchhhh-hhcccCCceEEE-EEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 2 111111111222 122223 4578899999999999999986
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.072 Score=49.59 Aligned_cols=112 Identities=12% Similarity=-0.021 Sum_probs=75.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc--------Cc-
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI--------DV- 100 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~--------~~- 100 (161)
+..++.++.||+|+.-|..+|+.+-++...+++.+-....+++.++-+..||.++.+|..++++..... ..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~ 148 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA 148 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence 557999999999999999999999998755555432222245555444567799999999887631111 00
Q ss_pred -c-cceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 101 -G-EFMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 101 -~-~~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+ ..|.+--..- +.+.+.+|+.|+.+ .-|.++++.+..+...
T Consensus 149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence 0 1122211111 12468899999999 9999999999888754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=51.41 Aligned_cols=110 Identities=11% Similarity=0.024 Sum_probs=71.2
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCC---eecceEee-CCCeEEecCC---------CCEEEEEECCCCCeeccc
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKP---IYSSFTRN-DPDFYVDVGE---------DWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~---i~ssp~~~-d~~~~V~~~d---------dg~Lyald~~tG~~~~w~ 97 (161)
+..++.+.||+|+..|..+|+..-.+..... -..++.+. |+..++.+.+ ++.+|..|..+|+.+...
T Consensus 28 g~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 107 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD 107 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred CcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc
Confidence 3344458899999999999999877754332 02334443 6666655543 268999999999863333
Q ss_pred cCcc-cceecceeEeeCC-eEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 98 IDVG-EFMRRMPHVWDDG-ALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 98 ~~~~-~~V~ssP~v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
...+ ..-..+|..+-|| .+.+++. +.+|.+|..+|+.......
T Consensus 108 ~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 108 PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 2211 1123456666556 4666664 7999999999988765543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.02 Score=46.50 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=66.2
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEE---------------------------------------Eec--CCCeecceEee
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWS---------------------------------------FSM--GKPIYSSFTRN 69 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~---------------------------------------f~t--~~~i~ssp~~~ 69 (161)
..++.++.||.|+..|..+++.... +.. ..+|.+-.-..
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 6899999999999999887665421 111 11222211112
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeecc-------ccCcccceecceeEeeC--CeEEEEeeCCEEEEEECCCCcE----E
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKP-------SIDVGEFMRRMPHVWDD--GALLLGHEKTSVFFVDAKSGGM----I 136 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w-------~~~~~~~V~ssP~v~~d--g~VyvGs~d~~lyalDa~TG~~----~ 136 (161)
++..++-+ +|+.++..|..++....- .+.....-..+-....+ ..++.|+.|+.++..|.++|+. +
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 45566655 677888888874433111 11111111112222323 4688999999999999999997 6
Q ss_pred EEecCCC
Q 031361 137 CSHESDN 143 (161)
Q Consensus 137 W~~~~~~ 143 (161)
..+....
T Consensus 267 ~~~~~~~ 273 (447)
T 3dw8_B 267 KLFEEPE 273 (447)
T ss_dssp EEECCC-
T ss_pred eEeccCC
Confidence 6666543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=96.29 E-value=0.096 Score=41.82 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=67.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
+..+..++.||.|+..| .+++.+.+++... ++.+ ... .++..++-++.|+.++..|..+.......+..+..|.+-
T Consensus 184 ~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~-~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v 261 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNH-LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI 261 (343)
T ss_dssp CCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEE-EEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEE
T ss_pred CCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceE-EEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEE
Confidence 46889999999999999 5678888876533 3443 233 356666666678899999984433213333333333322
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEE
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W 137 (161)
....++.++.++.|+.++..|..+++...
T Consensus 262 -~~sp~~~~la~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 262 -AFNPKLQWVAVGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp -EECSSSCEEEEEESSCEEEEESSSCCSCS
T ss_pred -EECCCCCEEEEECCCCEEEEEeCCCCCCc
Confidence 22334656667778889999988887544
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.013 Score=51.60 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=69.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC---eecceEee-CCCeEEecCC---------CCEEEEEECCCCCeec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP---IYSSFTRN-DPDFYVDVGE---------DWKLYFHRKGIGKMKK 95 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~---i~ssp~~~-d~~~~V~~~d---------dg~Lyald~~tG~~~~ 95 (161)
-++.+++.+.||+|+..|..+|+++=.+..... -..++... |+..++.+.+ ++.+|..|..+|+. .
T Consensus 25 ~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~-~ 103 (719)
T 1z68_A 25 SGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF-V 103 (719)
T ss_dssp SSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-C
T ss_pred CCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc-c
Confidence 355677777899999999999998755532211 02234443 6665555543 57899999999987 2
Q ss_pred cccCcccceecceeEeeCCe-EEEEeeCCEEEEEECCCCcEEE
Q 031361 96 PSIDVGEFMRRMPHVWDDGA-LLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 96 w~~~~~~~V~ssP~v~~dg~-VyvGs~d~~lyalDa~TG~~~W 137 (161)
....+.+. ..+|..+-||. +.++ .++++|..|..+|+.+.
T Consensus 104 ~~~~l~~~-~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 104 RGNELPRP-IQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp CSSCCCSS-BCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred cceecCcc-cccceECCCCCEEEEE-ECCeEEEEeCCCCCcEE
Confidence 11222222 35677766664 4455 58899999999998753
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.03 Score=45.44 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=60.4
Q ss_pred EecCCeEEEEeCCCCce----------------eEEEecC-CCeecceEe-eCCCeEEecCCCCE-EEEEECCCCCeecc
Q 031361 36 ATLNGTVHLVDTKRGES----------------RWSFSMG-KPIYSSFTR-NDPDFYVDVGEDWK-LYFHRKGIGKMKKP 96 (161)
Q Consensus 36 gs~DG~lyAvd~~tG~~----------------~W~f~t~-~~i~ssp~~-~d~~~~V~~~ddg~-Lyald~~tG~~~~w 96 (161)
|+.||.|+..|..+++. +-+++.. ++|.+ ... .|+..++-++.|+. +...|..+|+. ..
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~-~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~-~~ 232 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKM-VRLNRKSDMVATCSQDGTIIRVFKTEDGVL-VR 232 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEE-EEECTTSSEEEEEETTCSEEEEEETTTCCE-EE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEE-EEECCCCCEEEEEeCCCCEEEEEECCCCcE-EE
Confidence 68899999999988761 3444432 23332 222 25667777778887 99999999987 44
Q ss_pred ccC---cccceecceeEeeCCeEEEEeeCCEEEEEECCCCc
Q 031361 97 SID---VGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 97 ~~~---~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~ 134 (161)
.+. -...|.+--.--+...+..|+.|++++.-|.+++.
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 443 12233322111232456789999999999988774
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.09 Score=42.91 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCCEEEEEe--cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccC-cc-cce
Q 031361 29 SGDLALVAT--LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSID-VG-EFM 104 (161)
Q Consensus 29 ~~~~V~vgs--~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~-~~-~~V 104 (161)
.+..+.++| .||+|+-.|.++|+++.+++..++|.+-.-..|+..++.+.++ .+..++..+|+....... .+ ..|
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCE
Confidence 345555555 7899999999999999999988877653222366677666655 677788888876332221 11 223
Q ss_pred ecceeEeeCCeEEEEeeCC----EEEEEECCCCc
Q 031361 105 RRMPHVWDDGALLLGHEKT----SVFFVDAKSGG 134 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~----~lyalDa~TG~ 134 (161)
.+--+.-++..+..++.++ .+...|..+++
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~ 256 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGN 256 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence 3322223323355677665 45556655544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.21 Score=38.51 Aligned_cols=107 Identities=9% Similarity=0.036 Sum_probs=58.9
Q ss_pred CCEEEEEecC---CeEEEEeCCCCceeEEEecCC-CeecceEee-C-CCeEEecCCCCEEEEEECCCCCeeccccCcccc
Q 031361 30 GDLALVATLN---GTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-D-PDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 30 ~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d-~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
++.+|+.+.. +.|+.++.. |+..=.+.... ......++. + +.+|+-....+.++.+|...+..+.. ...
T Consensus 133 ~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-~~~--- 207 (267)
T 1npe_A 133 RGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV-LEG--- 207 (267)
T ss_dssp TTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE-EEC---
T ss_pred CCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE-ecC---
Confidence 5677777653 567766653 33221121111 111111222 2 24566555556788888765433121 111
Q ss_pred eeccee---EeeCCeEEEEee-CCEEEEEECCCCcEEEEecCCC
Q 031361 104 MRRMPH---VWDDGALLLGHE-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 104 V~ssP~---v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
...|. +. ++.+|+... ++.++.+|.++|+.+-++....
T Consensus 208 -~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~ 249 (267)
T 1npe_A 208 -LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK 249 (267)
T ss_dssp -CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred -CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccc
Confidence 12232 34 578999875 4799999999999998887543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.091 Score=41.52 Aligned_cols=103 Identities=11% Similarity=-0.010 Sum_probs=55.9
Q ss_pred EEEEEecCC------eEEEEeCCCCceeE-EEecCCCeecceEee-CCCeEEecC--CCCEEEEEECCCCCeeccccCcc
Q 031361 32 LALVATLNG------TVHLVDTKRGESRW-SFSMGKPIYSSFTRN-DPDFYVDVG--EDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 32 ~V~vgs~DG------~lyAvd~~tG~~~W-~f~t~~~i~ssp~~~-d~~~~V~~~--ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+|+|+..+ .++.+|..+|+... +......-....++. |+.+|+... +++.++.++..+|+.+......
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~- 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV- 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-
Confidence 678886543 37888888998765 222111111112222 445555443 2568888888777652222100
Q ss_pred cceecce---eEeeCCe-EEEEe-eCCEEEEEEC-CCCcEE
Q 031361 102 EFMRRMP---HVWDDGA-LLLGH-EKTSVFFVDA-KSGGMI 136 (161)
Q Consensus 102 ~~V~ssP---~v~~dg~-VyvGs-~d~~lyalDa-~TG~~~ 136 (161)
.....| ++..|+. +|+++ .++.+..+|. .+|+..
T Consensus 83 -~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 83 -APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp -EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred -cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 012233 3344554 88877 6788888887 455543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0095 Score=48.60 Aligned_cols=92 Identities=14% Similarity=0.010 Sum_probs=48.5
Q ss_pred ecCCeEEEEeCCCCceeEEEecCC---Ce--ecceEe------------eCCCeEEecCCCCEEEEEECC-CCCeecccc
Q 031361 37 TLNGTVHLVDTKRGESRWSFSMGK---PI--YSSFTR------------NDPDFYVDVGEDWKLYFHRKG-IGKMKKPSI 98 (161)
Q Consensus 37 s~DG~lyAvd~~tG~~~W~f~t~~---~i--~ssp~~------------~d~~~~V~~~ddg~Lyald~~-tG~~~~w~~ 98 (161)
.-||.|||+ .+|+ +|+.+... .+ .+...+ .|.+.++|...||.||.+++. +|.. .|
T Consensus 49 ~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~-~W-- 122 (236)
T 1tl2_A 49 SPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTD-NW-- 122 (236)
T ss_dssp CTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTC-CH--
T ss_pred CCCccEEEE--eCCe-EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCC-ce--
Confidence 338888888 5665 67765422 00 111122 233333332244566666542 3333 44
Q ss_pred CcccceecceeEee----CCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 99 DVGEFMRRMPHVWD----DGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 99 ~~~~~V~ssP~v~~----dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+..++.|-+ +=..++..-+|.|||++ +|++.+....
T Consensus 123 -----l~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P 162 (236)
T 1tl2_A 123 -----IARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPP 162 (236)
T ss_dssp -----HHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCC
T ss_pred -----eccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCC
Confidence 223455432 12356777899999999 8886554444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.033 Score=50.30 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=68.9
Q ss_pred CCEEEEEecCCeEEEEeCCCCc--eeEEEec-CCCeecceEeeC--CCeEEecCCCCEEEEEECCCCCee-ccccCc-cc
Q 031361 30 GDLALVATLNGTVHLVDTKRGE--SRWSFSM-GKPIYSSFTRND--PDFYVDVGEDWKLYFHRKGIGKMK-KPSIDV-GE 102 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~--~~W~f~t-~~~i~ssp~~~d--~~~~V~~~ddg~Lyald~~tG~~~-~w~~~~-~~ 102 (161)
+..++.|+.||.|+..|..+|+ ...++.. ..+|.+-....+ +..++-++.||.++.+|..++... ...+.. ..
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 7899999999999999999997 5555543 334443222223 556666667889999998887431 111111 11
Q ss_pred ceec---ceeE----------eeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 103 FMRR---MPHV----------WDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 103 ~V~s---sP~v----------~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
.|.+ +|.. .++..+++|+.|+.++..|..+++..
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~ 193 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc
Confidence 2222 2310 02356889999999999999888543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.032 Score=48.44 Aligned_cols=109 Identities=15% Similarity=0.042 Sum_probs=67.6
Q ss_pred CCCCEEEEEecC----------CeEEEEeCCC------CceeEEEe-cCCCeecceEee-CCCeEEecC-C-------CC
Q 031361 28 ESGDLALVATLN----------GTVHLVDTKR------GESRWSFS-MGKPIYSSFTRN-DPDFYVDVG-E-------DW 81 (161)
Q Consensus 28 ~~~~~V~vgs~D----------G~lyAvd~~t------G~~~W~f~-t~~~i~ssp~~~-d~~~~V~~~-d-------dg 81 (161)
..+..+++++.| ..||.+|..+ |++. ++. .+.....++... |+..++... + ..
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~ 217 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGT 217 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCE
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCc
Confidence 356678888877 6899999988 6654 332 333344445544 555444333 2 24
Q ss_pred EEEEEECC-CC---CeeccccCcc-cceecceeEeeCCeEEE-EeeCC--EEEEEECCCCcEEEEe
Q 031361 82 KLYFHRKG-IG---KMKKPSIDVG-EFMRRMPHVWDDGALLL-GHEKT--SVFFVDAKSGGMICSH 139 (161)
Q Consensus 82 ~Lyald~~-tG---~~~~w~~~~~-~~V~ssP~v~~dg~Vyv-Gs~d~--~lyalDa~TG~~~W~~ 139 (161)
.||.+|.. +| +.++. ..+ +....+|..+.||.+|+ ++.++ ++|.+|.++|+.....
T Consensus 218 ~i~~~d~~~~g~~~~~~~l--~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~ 281 (662)
T 3azo_A 218 ELKTARVTEDGRFADTRTL--LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC 281 (662)
T ss_dssp EEEEEEECTTSCEEEEEEE--EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred EEEEEEECCCCcccccEEe--CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc
Confidence 79999998 68 33222 222 23455777765676655 55566 8999999999865433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.044 Score=43.38 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=54.5
Q ss_pred CeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCC-----CCEEEEEECCCCCeec--cccCcccceecceeE
Q 031361 40 GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGE-----DWKLYFHRKGIGKMKK--PSIDVGEFMRRMPHV 110 (161)
Q Consensus 40 G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~d-----dg~Lyald~~tG~~~~--w~~~~~~~V~ssP~v 110 (161)
+.||.+|..+|+..--..... ....... |+. +|+.... ...++.++...+.+.. -........-..-++
T Consensus 169 ~~v~~~d~~~g~~~~~~~~~~--p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMADLDH--PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV 246 (305)
T ss_dssp EEEEEECSSSCCCEEEEEESS--EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred CeEEEEcCCCCcEEEEecCCC--CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence 678888887776543221111 1111222 333 5554333 2467777765432200 000111001112234
Q ss_pred eeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCC
Q 031361 111 WDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAST 147 (161)
Q Consensus 111 ~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~ 147 (161)
..+|.+|+++.+ .++.+|+ +|+.+.++.....+.+
T Consensus 247 d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~~~~~~ 281 (305)
T 3dr2_A 247 DRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTPGTASN 281 (305)
T ss_dssp CTTSCEEECCSS-EEEEECT-TSCEEEEEECSSCCCE
T ss_pred CCCCCEEEecCC-cEEEECC-CCCEEEEEECCCceeE
Confidence 556889999955 5999998 7999988887654433
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.067 Score=42.48 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=62.8
Q ss_pred EEEeCCCCceeEEEecCCCe-----ecceEee-CCCeEEecCC---CCEEEEEECCCCCeeccccCcccceecceeEeeC
Q 031361 43 HLVDTKRGESRWSFSMGKPI-----YSSFTRN-DPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDD 113 (161)
Q Consensus 43 yAvd~~tG~~~W~f~t~~~i-----~ssp~~~-d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~d 113 (161)
--+|..+|+.+-++...... ...+... |+..+++..+ +..||.+|..+|+.++... ........|..+.|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCC
Confidence 35688899888777543322 2334443 5555444322 3479999999998744432 22233344666555
Q ss_pred C-eEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 114 G-ALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 114 g-~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
| .+++.+.+..+|.+|..+|+....+..
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~ 120 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTV 120 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEec
Confidence 5 477888888999999999998766653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.06 Score=47.11 Aligned_cols=106 Identities=12% Similarity=-0.012 Sum_probs=65.1
Q ss_pred CCCEEEEEecCCeEEEEeCCC-----CceeEEEecCCC-e-------------ecceEee-CCCeEEecC----------
Q 031361 29 SGDLALVATLNGTVHLVDTKR-----GESRWSFSMGKP-I-------------YSSFTRN-DPDFYVDVG---------- 78 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~t-----G~~~W~f~t~~~-i-------------~ssp~~~-d~~~~V~~~---------- 78 (161)
.+..+++ +.|+.||..|..+ |+.+-....+.. + ..++... |+..++.+.
T Consensus 131 dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~ 209 (706)
T 2z3z_A 131 VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP 209 (706)
T ss_dssp TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence 4445555 5799999999998 887643333222 2 1233333 555544432
Q ss_pred -----------------------CCCEEEEEECCCCCeeccccC-cccceecceeEeeCCe-EEEEeeCC-----EEEEE
Q 031361 79 -----------------------EDWKLYFHRKGIGKMKKPSID-VGEFMRRMPHVWDDGA-LLLGHEKT-----SVFFV 128 (161)
Q Consensus 79 -----------------------ddg~Lyald~~tG~~~~w~~~-~~~~V~ssP~v~~dg~-VyvGs~d~-----~lyal 128 (161)
.+..+|.+|..+|+.++.... ..+.-..++..+.||. +++++.+. .++.+
T Consensus 210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 345799999999987333221 1222334455555564 78887775 99999
Q ss_pred ECCCCcE
Q 031361 129 DAKSGGM 135 (161)
Q Consensus 129 Da~TG~~ 135 (161)
|+.+|+.
T Consensus 290 d~~~g~~ 296 (706)
T 2z3z_A 290 DAETGRF 296 (706)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 9999943
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.048 Score=43.33 Aligned_cols=102 Identities=8% Similarity=-0.098 Sum_probs=61.3
Q ss_pred ecCCeEEEEeCCCCceeEEEecCCCeecceEeeC--CCeEEecCCC------CEEEEEECCCCCeeccccCcccceecce
Q 031361 37 TLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRND--PDFYVDVGED------WKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 37 s~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d--~~~~V~~~dd------g~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
..+..||.+|..+|+..........+. .+.... +..+++..++ ..||.+|..+++.+...-.........|
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIHQDTAWLG-HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred CCcceEEEEECCCCcEEeeccCCcccc-cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 356789999999999877665444333 344433 3333333221 4799999887765333221112234456
Q ss_pred eEeeCCe-EEEEeeC-----CEEEEEECCCCcEEEEe
Q 031361 109 HVWDDGA-LLLGHEK-----TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 109 ~v~~dg~-VyvGs~d-----~~lyalDa~TG~~~W~~ 139 (161)
..+.||. +++.+.+ +.+|.+|.++|+.....
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 7665554 6666544 45999999999876543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.12 Score=43.52 Aligned_cols=105 Identities=12% Similarity=0.004 Sum_probs=61.7
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCC-EEEEEECCCCCeecccc----C-
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDW-KLYFHRKGIGKMKKPSI----D- 99 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg-~Lyald~~tG~~~~w~~----~- 99 (161)
.++.+|+.+. ++.|+.+|..+|+..-......... +... +++ +|+...+++ .+|.++..++.. .... .
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~~~g~~~~~ 216 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PTRIGQLGST 216 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EEEEEECCTT
T ss_pred CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCce-eEEeeeccch
Confidence 3566777765 4788888888877764443332222 3333 333 455554443 899999877654 1111 0
Q ss_pred cccceecceeEee-CCeEEEEeeCCEEEEEECCCCcEEE
Q 031361 100 VGEFMRRMPHVWD-DGALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 100 ~~~~V~ssP~v~~-dg~VyvGs~d~~lyalDa~TG~~~W 137 (161)
...... .-++.. ++.+|+...++.+|.+|.++++...
T Consensus 217 ~~~~p~-~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~ 254 (409)
T 3hrp_A 217 FSGKIG-AVALDETEEWLYFVDSNKNFGRFNVKTQEVTL 254 (409)
T ss_dssp SCSCCC-BCEECTTSSEEEEECTTCEEEEEETTTCCEEE
T ss_pred hcCCcE-EEEEeCCCCeEEEEECCCcEEEEECCCCCEEE
Confidence 111111 112333 5889998788899999999887544
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.13 Score=41.20 Aligned_cols=108 Identities=6% Similarity=0.035 Sum_probs=65.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCce--eEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeec--cccCcc-c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGES--RWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKK--PSIDVG-E 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~--~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~--w~~~~~-~ 102 (161)
.+..++.|+.||.++..|..+++. +-+++.. .+|.+-.-..++..++-++.|+.++..|..++.... ..+... +
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 567899999999999998887753 4445432 234332112356677777778888888877764311 111111 1
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
.|.+--..-+...+..|+.|+++...|..+++..
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~ 185 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWV 185 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE
Confidence 2222111112345788999999999998888654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.093 Score=41.80 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=60.7
Q ss_pred CCEEEEEecC------------------CeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECC
Q 031361 30 GDLALVATLN------------------GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 30 ~~~V~vgs~D------------------G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~ 89 (161)
++.+|+++.. |.||.+|..+|+..-..... ......++. |+. +||.....+.++.++..
T Consensus 137 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 137 TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL-HVPGGAEVSADSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE-SCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred CCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC-ccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 5678887643 77888888777654222110 001111222 333 66654445588888876
Q ss_pred CCCeeccccCcccceeccee---EeeCCeEEEEeeC-----------CEEEEEECCCCcEEEEecCC
Q 031361 90 IGKMKKPSIDVGEFMRRMPH---VWDDGALLLGHEK-----------TSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 90 tG~~~~w~~~~~~~V~ssP~---v~~dg~VyvGs~d-----------~~lyalDa~TG~~~W~~~~~ 142 (161)
+++...... ..+ ... |- +..+|.+|++... +.++.+|+ +|+++-.+...
T Consensus 216 ~~~~~~~~~-~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~ 278 (322)
T 2fp8_A 216 GPKKGTAEV-LVK-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP 278 (322)
T ss_dssp STTTTCEEE-EEE-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred CCcCCccce-EEe-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC
Confidence 432100000 001 112 43 4556889998764 67999997 59998888754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.017 Score=49.13 Aligned_cols=111 Identities=7% Similarity=-0.067 Sum_probs=68.1
Q ss_pred CCCEEE----EEecCCeEEEEeCCCC--------ceeEEEec----CCCeecceEee-C-CCeEEecCCCCEEEEEECCC
Q 031361 29 SGDLAL----VATLNGTVHLVDTKRG--------ESRWSFSM----GKPIYSSFTRN-D-PDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 29 ~~~~V~----vgs~DG~lyAvd~~tG--------~~~W~f~t----~~~i~ssp~~~-d-~~~~V~~~ddg~Lyald~~t 90 (161)
.+..++ .|+.||.|+..|..++ +++.+++. ..++.+ .... + +..++-+..||.++..|.++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~~p~~~~~las~s~Dg~v~iwD~~~ 181 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVID-MKWNPTVPSMVAVCLADGSIAVLQVTE 181 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEE-EEECSSCTTEEEEEETTSCEEEEEESS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEE-EEECCCCCCEEEEEECCCeEEEEEcCC
Confidence 455666 4678999999998776 55555554 233332 2222 2 45666666788999999888
Q ss_pred CCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 91 GKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 91 G~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+....-...-...|.+-=..-+...+++|+.|++++..|.+ |+....+..
T Consensus 182 ~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~ 231 (434)
T 2oit_A 182 TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC 231 (434)
T ss_dssp SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence 85522111112233321111123568899999999999998 777766543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.034 Score=48.93 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=56.9
Q ss_pred CCCEEEEEec---------CCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeecccc
Q 031361 29 SGDLALVATL---------NGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 29 ~~~~V~vgs~---------DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~ 98 (161)
.+..+++++. |+.|+..|..+|+.+...+....+. .+.. .|+..+++.. +++||..+..+|+.++...
T Consensus 70 Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~-~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 70 DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQ-YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBC-CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC
T ss_pred CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccc-cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec
Confidence 5666777766 7999999999998743222223333 3343 3666666665 4599999999988754433
Q ss_pred Ccccc-ee----------------cceeEeeCCe-EEEEeeC
Q 031361 99 DVGEF-MR----------------RMPHVWDDGA-LLLGHEK 122 (161)
Q Consensus 99 ~~~~~-V~----------------ssP~v~~dg~-VyvGs~d 122 (161)
.-... |. .+|..+-||. +++++.|
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 22211 11 3677766654 6667655
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.056 Score=50.40 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=69.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCC-eecceEeeCCCeEEecCCCCEEE-EEECCCCCeeccccCcccceecc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSSFTRNDPDFYVDVGEDWKLY-FHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ssp~~~d~~~~V~~~ddg~Ly-ald~~tG~~~~w~~~~~~~V~ss 107 (161)
+..+.+++ ++.|+.+|..+|+.+- +..... -...+...|+..++++.++..++ .++..+++.+... ....-..+
T Consensus 308 G~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~ 383 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFA 383 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEE
T ss_pred CCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEec--CCccceee
Confidence 34455555 8999999998887653 222111 12223333445556666677899 8899888774443 22223345
Q ss_pred eeEeeCC-eEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 108 PHVWDDG-ALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 108 P~v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
+..+.|| .+++++.++.++.+|.++|++.....
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~ 417 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 417 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence 6666555 47789999999999999999887763
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.085 Score=49.20 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCEEEEEecCCeEE-EEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 30 GDLALVATLNGTVH-LVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 30 ~~~V~vgs~DG~ly-Avd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
+..+++++.++.++ .+|..+|++. ++.....-...+... |+..++.+.+++.++.+|..+|+.+.. ...+..-..+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~-~~~~~~~v~~ 425 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-ERSREAMITD 425 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSSCCCC
T ss_pred CCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe-ccCCCCCccc
Confidence 34567777788999 8898877654 332111112233333 666676666778999999999988333 3222222345
Q ss_pred eeEeeCCe-EEEEeeC----------CEEEEEECCCCcE
Q 031361 108 PHVWDDGA-LLLGHEK----------TSVFFVDAKSGGM 135 (161)
Q Consensus 108 P~v~~dg~-VyvGs~d----------~~lyalDa~TG~~ 135 (161)
+..+.||. +.+++.+ +.+|..|.++|++
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 66665665 5555554 4999999999983
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.25 Score=38.94 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=56.2
Q ss_pred CCCEEEEEe-cCCeEEEEeCC-CCce--eEEEecCC--C--------eecceEe-eCCCeEEecCCCCEEEEEECC-CCC
Q 031361 29 SGDLALVAT-LNGTVHLVDTK-RGES--RWSFSMGK--P--------IYSSFTR-NDPDFYVDVGEDWKLYFHRKG-IGK 92 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~-tG~~--~W~f~t~~--~--------i~ssp~~-~d~~~~V~~~ddg~Lyald~~-tG~ 92 (161)
.+..+|+++ .+|.++.+|.. +|+. +.++...+ | +.. ... .|+.+|+....++.++.++.. +|+
T Consensus 96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY-TDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE-EEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE-EEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 466788888 67888888874 4443 34443322 1 111 122 255566666666678888776 666
Q ss_pred eeccccCcccceecce---eEeeCCe-EEEE-eeCCEEEEE--ECCCCcEE
Q 031361 93 MKKPSIDVGEFMRRMP---HVWDDGA-LLLG-HEKTSVFFV--DAKSGGMI 136 (161)
Q Consensus 93 ~~~w~~~~~~~V~ssP---~v~~dg~-VyvG-s~d~~lyal--Da~TG~~~ 136 (161)
+... ..........| ++..||. +|+. ..++.++.+ |..+|++.
T Consensus 175 ~~~~-~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 175 LSEQ-SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEEE-EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEe-eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 5221 11111111123 4454565 7764 456665554 45468753
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.085 Score=41.48 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=61.4
Q ss_pred CCCEEEEEecC---C--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecC-C----------------------
Q 031361 29 SGDLALVATLN---G--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVG-E---------------------- 79 (161)
Q Consensus 29 ~~~~V~vgs~D---G--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~-d---------------------- 79 (161)
.+..+++.+.+ + .||.+|..+|+.+--..... ...+... |+..+++.. +
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 146 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF 146 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence 44555555543 3 49999999888765554443 3344443 555444432 1
Q ss_pred ----CCEEEEEECCCCCe-eccccCcccceecceeEeeCCeEEEEee---------CCEEEEEECCCCcEEEE
Q 031361 80 ----DWKLYFHRKGIGKM-KKPSIDVGEFMRRMPHVWDDGALLLGHE---------KTSVFFVDAKSGGMICS 138 (161)
Q Consensus 80 ----dg~Lyald~~tG~~-~~w~~~~~~~V~ssP~v~~dg~VyvGs~---------d~~lyalDa~TG~~~W~ 138 (161)
...||.+|..+|+. +.... . -...+....||.+|.++. ...+|.+| +|+...-
T Consensus 147 ~~~~~~~l~~~d~~~~~~~~~l~~--~--~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 213 (347)
T 2gop_A 147 FDGEKTTFWIFDTESEEVIEEFEK--P--RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKM 213 (347)
T ss_dssp ---CEEEEEEEETTTTEEEEEEEE--E--TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEE
T ss_pred ccCccceEEEEECCCCeEEeeecC--C--CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEe
Confidence 25799999999876 33322 2 334566666674455544 33799999 7776543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.19 Score=39.94 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=57.9
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEE--EecCCCe---ecceEee-CCC-eEEecCC-CCEEEE--EECCCCCeecc-
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWS--FSMGKPI---YSSFTRN-DPD-FYVDVGE-DWKLYF--HRKGIGKMKKP- 96 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~--f~t~~~i---~ssp~~~-d~~-~~V~~~d-dg~Lya--ld~~tG~~~~w- 96 (161)
.+..+|+++ .++.|+.+|..+|++... +.+...- .....+. |+. +|+...+ ++.+.. ++..+|++...
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence 455688877 588999999888866433 3222110 1122222 444 4555444 445555 44467775222
Q ss_pred ccCcccceecceeEeeCCe-EEEEe-eCCEE--EEEECCCCcEEEE
Q 031361 97 SIDVGEFMRRMPHVWDDGA-LLLGH-EKTSV--FFVDAKSGGMICS 138 (161)
Q Consensus 97 ~~~~~~~V~ssP~v~~dg~-VyvGs-~d~~l--yalDa~TG~~~W~ 138 (161)
.+..+..+ ..-.++.||. +|+++ .++.+ |.+|.+||++...
T Consensus 301 ~~~~g~~~-~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 301 YQLTGIHP-RNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEECSSCC-CEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EecCCCCC-ceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 12221111 1223444554 78877 44554 4589999998754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.3 Score=42.26 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=59.4
Q ss_pred CCCEEEEEecCC--------eEEEEeCC-CCc--eeEEEecC-CCeecceEee-CCCeEEecCCCC--EEEEEECCCCCe
Q 031361 29 SGDLALVATLNG--------TVHLVDTK-RGE--SRWSFSMG-KPIYSSFTRN-DPDFYVDVGEDW--KLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG--------~lyAvd~~-tG~--~~W~f~t~-~~i~ssp~~~-d~~~~V~~~ddg--~Lyald~~tG~~ 93 (161)
.+..+++.+.|+ .|+.+|.. +|+ ..-++..+ .....++... |+.+++-...++ +||.+|..+|+.
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence 556676676553 79999998 672 22233222 2222334443 666555554555 899999888876
Q ss_pred eccccCcccce--------ecceeEeeCCeEEE-Eee-CCEEEEEECCCCcE
Q 031361 94 KKPSIDVGEFM--------RRMPHVWDDGALLL-GHE-KTSVFFVDAKSGGM 135 (161)
Q Consensus 94 ~~w~~~~~~~V--------~ssP~v~~dg~Vyv-Gs~-d~~lyalDa~TG~~ 135 (161)
+... .....+ ..+..+..++.+++ ++. ...||.+|..+|++
T Consensus 278 ~~l~-~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 278 TQLC-RREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGEL 328 (662)
T ss_dssp EESS-CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEE
T ss_pred eecc-cccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcE
Confidence 3322 212112 12233333455554 443 45789999888874
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.29 Score=38.17 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=66.1
Q ss_pred CCCCEEEEEecCCeEEEEeCCCC--ceeEEEec-CCCeecceEee---CCCeEEecCCCCEEEEEECCCCCeec-cccCc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRG--ESRWSFSM-GKPIYSSFTRN---DPDFYVDVGEDWKLYFHRKGIGKMKK-PSIDV 100 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG--~~~W~f~t-~~~i~ssp~~~---d~~~~V~~~ddg~Lyald~~tG~~~~-w~~~~ 100 (161)
..+..+..|+.||+|+..|..++ +++=+++. .++|.+ .... ++..++-++.|+.+...|..+|+... -.+..
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~-v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~ 97 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV 97 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEE-EEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC
T ss_pred CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEE-EEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec
Confidence 35778999999999999998643 55556643 234443 2222 25667777778899999988875311 11111
Q ss_pred c-cceecceeEee--CCeEEEEeeCCEEEEEECCCCc
Q 031361 101 G-EFMRRMPHVWD--DGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 101 ~-~~V~ssP~v~~--dg~VyvGs~d~~lyalDa~TG~ 134 (161)
. ..|.+--..-+ ...+..|+.|+++...|.++++
T Consensus 98 h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 1 12222111111 2467889999999999988774
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.037 Score=46.90 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=71.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCce----eEEEecCCC----ee---cc-eEee-CC-CeEEecC-C-------CCEEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGES----RWSFSMGKP----IY---SS-FTRN-DP-DFYVDVG-E-------DWKLYFH 86 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~----~W~f~t~~~----i~---ss-p~~~-d~-~~~V~~~-d-------dg~Lyal 86 (161)
.++.+|+.+. |.++.+|..+++. .|.+.+... .. .. ..+. |+ .+||... + +.....+
T Consensus 221 ~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 221 YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence 4567777777 9999999976542 376643210 00 00 1122 33 4776543 2 2356689
Q ss_pred ECCCCCeeccccCcccceecceeEeeCC-eEEEEee--CCEEEEEECCCCcEEEEecCCCCC
Q 031361 87 RKGIGKMKKPSIDVGEFMRRMPHVWDDG-ALLLGHE--KTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 87 d~~tG~~~~w~~~~~~~V~ssP~v~~dg-~VyvGs~--d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
|..++++ .-++.+++...+-= +..|+ .+|+... ++++..||.+|++++-+......+
T Consensus 300 D~~t~~v-v~~i~vg~~p~gi~-~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 300 TASVGQT-SGPISNGHDSDAII-AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp ESSSCCE-EECCEEEEEECEEE-ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred ECCCCeE-EEEEECCCCcceEE-ECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 9999988 55666665322222 33345 4777775 899999999999999998866544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.076 Score=43.63 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=69.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC------CCeec---ceEe-----eCCCeEEecCCCCEEEEEECCCCCee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG------KPIYS---SFTR-----NDPDFYVDVGEDWKLYFHRKGIGKMK 94 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~------~~i~s---sp~~-----~d~~~~V~~~ddg~Lyald~~tG~~~ 94 (161)
....+..|+.|++|+-.|..+|+..-..... +.|.+ +|.. .|+..++-+++|+.+...|..++..+
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 4456778999999999999999876543221 12221 1111 13456677778889998898777664
Q ss_pred ccccCcccceecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 95 KPSIDVGEFMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 95 ~w~~~~~~~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.-.+.....|.+--..-++ ..+..|+.|+++..-|.++|+......
T Consensus 180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 4444445555442222122 357789999999999999998876654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.4 Score=41.01 Aligned_cols=69 Identities=7% Similarity=0.093 Sum_probs=44.7
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecc--eeEeeCCeEE-------------EEeeCCEEEEEECCCC
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRM--PHVWDDGALL-------------LGHEKTSVFFVDAKSG 133 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ss--P~v~~dg~Vy-------------vGs~d~~lyalDa~TG 133 (161)
+++.++-++.|+.+...|.+||+. ...++.+. .+.+. =++..|+..+ -|+.|.++...|++||
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred CCceEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 457788888899999999999997 55554322 11111 0223345433 3789999999999999
Q ss_pred cEEEEe
Q 031361 134 GMICSH 139 (161)
Q Consensus 134 ~~~W~~ 139 (161)
+.+..+
T Consensus 271 k~l~v~ 276 (356)
T 2w18_A 271 LSVGVM 276 (356)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987655
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.31 Score=38.69 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=37.2
Q ss_pred CCC-eEEecCCCCEEEEEECCCCCeeccccCcccce-----ecceeEeeCCe-EEEEeeC--CEEEE--EECCCCcE--E
Q 031361 70 DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM-----RRMPHVWDDGA-LLLGHEK--TSVFF--VDAKSGGM--I 136 (161)
Q Consensus 70 d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V-----~ssP~v~~dg~-VyvGs~d--~~lya--lDa~TG~~--~ 136 (161)
|+. +|+.+..++.++.++..+|++ .......... .....++.||. +|+...+ +.+.. +|.++|++ +
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 443 555554566788887777765 2211111110 11334554564 7777765 55444 66678884 4
Q ss_pred EEecC
Q 031361 137 CSHES 141 (161)
Q Consensus 137 W~~~~ 141 (161)
..+..
T Consensus 300 ~~~~~ 304 (361)
T 3scy_A 300 GYQLT 304 (361)
T ss_dssp EEEEC
T ss_pred eEecC
Confidence 44443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.58 Score=36.44 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=61.9
Q ss_pred CCEEEEEecCCeEEEEeCCCCc--eeEEEecC-CCeecceEee-C--CCeEEecCCCCEEEEEECCCCCee-ccccCcc-
Q 031361 30 GDLALVATLNGTVHLVDTKRGE--SRWSFSMG-KPIYSSFTRN-D--PDFYVDVGEDWKLYFHRKGIGKMK-KPSIDVG- 101 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~--~~W~f~t~-~~i~ssp~~~-d--~~~~V~~~ddg~Lyald~~tG~~~-~w~~~~~- 101 (161)
+..++.|+.||+|+.-|..+|+ .+=++... .++.+ .... + +..++-+..|+.+...|..++... ...+...
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~-v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNS-VQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEE-EEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeE-EEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence 5788999999999999998885 33333322 23332 2222 2 445555667779988888776421 1111111
Q ss_pred cce---ecceeEe----------eCCeEEEEeeCCEEEEEECCCCc
Q 031361 102 EFM---RRMPHVW----------DDGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 102 ~~V---~ssP~v~----------~dg~VyvGs~d~~lyalDa~TG~ 134 (161)
..| .-+|... +...+..|+.|++++.-|..+++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 112 1233210 11357789999999999988887
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.51 Score=40.33 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=67.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-eecc--eEee-CCCeE------------EecCCCCEEEEEECCCCC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSS--FTRN-DPDFY------------VDVGEDWKLYFHRKGIGK 92 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ss--p~~~-d~~~~------------V~~~ddg~Lyald~~tG~ 92 (161)
.+..+.-|+.|++|.--|.+||+.+-+++.+.. +.+. .++. |+..+ .-+..|+.+...|+.+|+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 346677789999999999999999999975432 1111 0111 33322 123456678888888887
Q ss_pred eecc---ccCccc---ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 93 MKKP---SIDVGE---FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 93 ~~~w---~~~~~~---~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
...- .+.-+. .+ +.... +..+.-|+.|++++.=|..+|+.+-++..
T Consensus 272 ~l~v~~~~~p~Gh~~~~l--sg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFL--EGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp EEEEEEECCCTTCCCCEE--EEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred EEEEEEeeccCCCcceeE--ccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 6221 111111 11 11111 13456788999999999999999999863
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.23 Score=39.99 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCCEEEEE--ecCCeEEEEeCCCCceeEEEecCCC---ee-cceEeeCCCeEEecCC----C------CEEEEEECCCCC
Q 031361 29 SGDLALVA--TLNGTVHLVDTKRGESRWSFSMGKP---IY-SSFTRNDPDFYVDVGE----D------WKLYFHRKGIGK 92 (161)
Q Consensus 29 ~~~~V~vg--s~DG~lyAvd~~tG~~~W~f~t~~~---i~-ssp~~~d~~~~V~~~d----d------g~Lyald~~tG~ 92 (161)
.++.+|+. .....++++|..+.+-.|+.-..-| -. .+..+.++.+||.++. + ..++.+|+.+.+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 47777763 2345799999987777898765433 11 2223447778876543 1 358999998863
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.38 Score=38.74 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=43.4
Q ss_pred CCEEEEEec------CCeEEEEeCCCCceeEEEecCCCee------cceEee--CCCeEEecC---CCCEEEEEECCCCC
Q 031361 30 GDLALVATL------NGTVHLVDTKRGESRWSFSMGKPIY------SSFTRN--DPDFYVDVG---EDWKLYFHRKGIGK 92 (161)
Q Consensus 30 ~~~V~vgs~------DG~lyAvd~~tG~~~W~f~t~~~i~------ssp~~~--d~~~~V~~~---ddg~Lyald~~tG~ 92 (161)
++.+|+.+. ++.|+.+|.++|+++-++.....+. ...++. ++.+||-.. .++.++.+|..+|+
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 578888774 5899999999999776666533211 112333 234666544 45689999998887
Q ss_pred eec
Q 031361 93 MKK 95 (161)
Q Consensus 93 ~~~ 95 (161)
..+
T Consensus 157 ~~r 159 (343)
T 2qe8_A 157 AAR 159 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 733
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.21 Score=39.21 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC-----CCEEEEEECCCCCeeccccCcccceecceeEee
Q 031361 39 NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE-----DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWD 112 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d-----dg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~ 112 (161)
++.|+.+|..+|+++ ++ ..+ ..|... |+..+++..+ ...||.++..+|+.++. ...+. ..+|..+.
T Consensus 42 ~~~l~~~d~~~~~~~-~l---~~~-~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-~~~~~--~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI---ENA-TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-LEAKN--IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEE-EE---ESC-EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE-EEESE--EEEEEECT
T ss_pred cceEEEEeCCCCceE-Ec---ccC-CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE-EcCCC--ccceeECC
Confidence 678999999888764 23 222 234443 5555444332 23599999998887333 22233 55666654
Q ss_pred CC-eEEEEeeC---------------------------CEEEEEECCCCcEEEEe
Q 031361 113 DG-ALLLGHEK---------------------------TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 113 dg-~VyvGs~d---------------------------~~lyalDa~TG~~~W~~ 139 (161)
|+ .+++.+.+ ..+|.+|..+|+.+..+
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l 168 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF 168 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee
Confidence 44 47776642 68999999999874443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.36 Score=38.22 Aligned_cols=103 Identities=18% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCc-eeEEEecC-------CCeecceE--eeCC-CeEEecCCCCEEEEEECCC-CCeec
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGE-SRWSFSMG-------KPIYSSFT--RNDP-DFYVDVGEDWKLYFHRKGI-GKMKK 95 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~-~~W~f~t~-------~~i~ssp~--~~d~-~~~V~~~ddg~Lyald~~t-G~~~~ 95 (161)
.++.+|+.+. +|.||.+|..+|+ .+|..... ..+. .|. ..|+ .+||-......++.++... |++..
T Consensus 126 ~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~-~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~ 204 (306)
T 2p4o_A 126 SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP-AANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGE 204 (306)
T ss_dssp SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC-SEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCC
T ss_pred CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC-cCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCc
Confidence 3556888874 8999999998775 34433210 1111 111 1122 3555544455777777653 43310
Q ss_pred cccCcccceecce---eEeeCCeEEEEee-CCEEEEEECCCCcEE
Q 031361 96 PSIDVGEFMRRMP---HVWDDGALLLGHE-KTSVFFVDAKSGGMI 136 (161)
Q Consensus 96 w~~~~~~~V~ssP---~v~~dg~VyvGs~-d~~lyalDa~TG~~~ 136 (161)
.. ...+. ..| ++..||.+|+... .+.++.+|+. |++.
T Consensus 205 ~~-~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 205 PE-IFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp CE-EEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred cE-EEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence 00 00000 223 2455678898875 5689999975 8773
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.41 Score=38.94 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=40.4
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecceeEeeCC-eEEEEeeCCEEEEEECC
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMPHVWDDG-ALLLGHEKTSVFFVDAK 131 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP~v~~dg-~VyvGs~d~~lyalDa~ 131 (161)
|+..++-++.|+.++.+|..+|+..+-..+.+. .|.+ =...-|+ .+..||.|+++...|..
T Consensus 280 dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~-v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 280 KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE-VTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE-EEECTTSCEEEEEETTSEEEEEECC
T ss_pred CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE-EEECCCCCEEEEEeCCCeEEEEEcC
Confidence 556666666788999999999987332234433 3333 2233345 46679999999998864
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.4 Score=40.64 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=66.0
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEec------CCC-eecceEee---C--CCeEEecC-------------CCCE
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSM------GKP-IYSSFTRN---D--PDFYVDVG-------------EDWK 82 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t------~~~-i~ssp~~~---d--~~~~V~~~-------------ddg~ 82 (161)
.++++|+++ ..|+|+.+|+..|.. ..... +.+ ...+-... | +.++|-.. .+..
T Consensus 23 ~~g~~~vs~l~~g~V~~~~~~~~~~-~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~ 101 (334)
T 2p9w_A 23 TRQVFYQSNLYKGRIEVYNPKTQSH-FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASS 101 (334)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCCE-EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCE
T ss_pred CCCEEEEEeccCCEEEEEcCCCCeE-EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCE
Confidence 369999999 699999999976632 23322 222 22222223 2 33454221 1457
Q ss_pred EEEEECC---CCCeeccccCcccceec-------c---e---eEeeCCeEEE-EeeC-CEEEEEECCCCc
Q 031361 83 LYFHRKG---IGKMKKPSIDVGEFMRR-------M---P---HVWDDGALLL-GHEK-TSVFFVDAKSGG 134 (161)
Q Consensus 83 Lyald~~---tG~~~~w~~~~~~~V~s-------s---P---~v~~dg~Vyv-Gs~d-~~lyalDa~TG~ 134 (161)
|+++|.. ||+. .|...+...... . | ++..+|.+|| ++.. +.|+.||+. |+
T Consensus 102 v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~ 169 (334)
T 2p9w_A 102 FHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GK 169 (334)
T ss_dssp EEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SC
T ss_pred EEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CC
Confidence 9999998 9999 887776543322 1 1 2455688998 8999 999999965 44
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.14 Score=44.85 Aligned_cols=109 Identities=11% Similarity=-0.059 Sum_probs=69.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCc-eeEEEecC-CCeecce-Eee-CC-CeEEecCCCCEEEEEECCCCCeeccccCccc--
Q 031361 30 GDLALVATLNGTVHLVDTKRGE-SRWSFSMG-KPIYSSF-TRN-DP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-- 102 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~-~~W~f~t~-~~i~ssp-~~~-d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-- 102 (161)
++.++.|+.||+|+..|..+++ +...++.. ++|.+-. ... ++ ..++-++.|+.+...|.++++. .-.+....
T Consensus 277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~ 355 (524)
T 2j04_B 277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRG 355 (524)
T ss_dssp SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSC
T ss_pred CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-cccccccccc
Confidence 4689999999999999999884 55556542 3454321 222 33 4667777788888888877764 22221111
Q ss_pred -ceecceeEeeCC-eEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 103 -FMRRMPHVWDDG-ALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 103 -~V~ssP~v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.|. +-....++ .+..|+.|+++...|.++|+...++.
T Consensus 356 ~~v~-~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 356 SNLV-PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp CSCC-CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred Cccc-ceEeCCCcCeEEEeCCCCcEEEEECcccccceeee
Confidence 111 11122223 46678899999999999998765544
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.51 Score=42.88 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=72.3
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCce-------eEEEecCC-----CeecceEeeCCCeEEecCCCCEEEEEECCCCCeec
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGES-------RWSFSMGK-----PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~-------~W~f~t~~-----~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
..+..+++|+.||+|.-.|..+|+. +-+++... .|.+-.-..|+ ++-++.|+.++..|..+++.+.
T Consensus 139 PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 139 PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP 216 (588)
T ss_dssp SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc
Confidence 5899999999999999999999863 56665433 34433222244 5555667789999988877521
Q ss_pred -c-cc-Ccc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcE-EEEecCCC
Q 031361 96 -P-SI-DVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGM-ICSHESDN 143 (161)
Q Consensus 96 -w-~~-~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~-~W~~~~~~ 143 (161)
+ .+ ..+ ..|.+--.. +..+..++ +++++.-|..+++. ..+++...
T Consensus 217 ~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~ 266 (588)
T 2j04_A 217 VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE 266 (588)
T ss_dssp CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence 1 12 122 234333333 36555555 79999999999999 66664333
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.26 Score=44.14 Aligned_cols=102 Identities=9% Similarity=0.074 Sum_probs=61.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe-cCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~-t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.++.+++||.+| |+.+|..+++..=... ....|.. ....++.++|+.. + .||.+|..+++.+..... ...+...
T Consensus 72 ~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~-i~~~~g~lWigt~-~-Gl~~~~~~~~~~~~~~~~-~~~l~~~ 146 (758)
T 3ott_A 72 DNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRT-MALQGDTLWLGAL-N-GLYTYQLQSRKLTSFDTR-RNGLPNN 146 (758)
T ss_dssp TTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEE-EEEETTEEEEEET-T-EEEEEETTTCCEEEECHH-HHCCSCS
T ss_pred CCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEE-EEecCCcEEEEcC-C-cceeEeCCCCeEEEeccC-CCCcCCC
Confidence 478999999765 8999999875321000 0011221 1223566777764 3 599999988876333111 1111111
Q ss_pred e----eEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 108 P----HVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 108 P----~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
. +...++.+++|+.+ -|+.+|.++++..
T Consensus 147 ~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEECTTCCEEEEETT-EEEEEETTTTEEE
T ss_pred eEEEEEEcCCCCEEEEeCC-CHhhCccCCCceE
Confidence 1 12335889999965 6999999988764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.26 Score=39.40 Aligned_cols=106 Identities=8% Similarity=0.067 Sum_probs=64.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe--cC--CCeecceEe-eCCCeEEecCCCCEEEEEECCCCCee-ccccCcc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS--MG--KPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMK-KPSIDVG- 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~--t~--~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~-~w~~~~~- 101 (161)
.+..+..|+.||+|+..|..+++..-+.. .+ .+|.+ ... .++..++-++.|+.+...+..++..+ ...+..+
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRK-VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEE-EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS
T ss_pred CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEE-EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC
Confidence 56788899999999999998887554432 22 23332 222 25566666666778877777666431 1122222
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
+.|.+--..-+...+..|+.|++++.-|..+++.
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 1232211111335577899999999999887753
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.32 Score=38.38 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=65.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCce--eEEEec-CCCeecceEee---CCCeEEecCCCCEEEEEECCCCCee-ccccCcc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGES--RWSFSM-GKPIYSSFTRN---DPDFYVDVGEDWKLYFHRKGIGKMK-KPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~--~W~f~t-~~~i~ssp~~~---d~~~~V~~~ddg~Lyald~~tG~~~-~w~~~~~ 101 (161)
.+..+..|+.||+|+..|..+|+. +-+++. .++|.. .... ++..++-++.|+.+...|..+|+.+ ...+..+
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~-v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h 102 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQ-VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGH 102 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEE-EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCC
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEE-EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCC
Confidence 567899999999999999988864 455553 234443 2222 2456666667888998898887431 1122211
Q ss_pred -cceecceeEee--CCeEEEEeeCCEEEEEECCCCc
Q 031361 102 -EFMRRMPHVWD--DGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 102 -~~V~ssP~v~~--dg~VyvGs~d~~lyalDa~TG~ 134 (161)
..|.+--..-+ ...+..|+.|++++..|..+++
T Consensus 103 ~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~ 138 (316)
T 3bg1_A 103 DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG 138 (316)
T ss_dssp SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence 12222111111 1357789999999999988764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.18 Score=44.26 Aligned_cols=108 Identities=9% Similarity=-0.014 Sum_probs=65.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCcee-----------EEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESR-----------WSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~-----------W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~ 97 (161)
.+++..++.||+|+..|..+++.. -++... .++. +....++..++-+..||.+...|..++......
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~ 303 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFY 303 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSSEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCCeEEEEeCCCEEEEEECCCCCCceEE
Confidence 468888999999999999887532 233222 2222 223333344555556779999999887541222
Q ss_pred cCcc-cceecce-eEeeCC--eEEEEeeCCEEEEEECCCCcEEEE
Q 031361 98 IDVG-EFMRRMP-HVWDDG--ALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 98 ~~~~-~~V~ssP-~v~~dg--~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
+..+ +.|.+-- ....++ .+..||.|+++..-|.++++....
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~ 348 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT 348 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence 3322 2343321 122234 467899999999999988875433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=94.68 E-value=0.21 Score=44.74 Aligned_cols=103 Identities=7% Similarity=-0.074 Sum_probs=63.6
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC--Ceec---ceEe-eCCCeEEecCCC---------CEEEEEECCCCCee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYS---SFTR-NDPDFYVDVGED---------WKLYFHRKGIGKMK 94 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~s---sp~~-~d~~~~V~~~dd---------g~Lyald~~tG~~~ 94 (161)
++..++.+ ||+|+..|..+|+..=.++... .... .+.. .|+..++...++ +.+|.+|..+|+.+
T Consensus 27 dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 27 DHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 44444444 9999999999999752232211 1111 1222 255544444432 57888999999874
Q ss_pred ccccCcccceecceeEeeCCe-EEEEeeCCEEEEEECCCCcEE
Q 031361 95 KPSIDVGEFMRRMPHVWDDGA-LLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 95 ~w~~~~~~~V~ssP~v~~dg~-VyvGs~d~~lyalDa~TG~~~ 136 (161)
+. .....-..+|..+-||. |.++ .++.||..|..+|+..
T Consensus 106 ~l--~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 106 TE--ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY 145 (740)
T ss_dssp CS--SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE
T ss_pred Ec--ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE
Confidence 43 22222456788776665 4444 6889999999999865
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.054 Score=44.15 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=40.6
Q ss_pred CCCEEEEEECCCCCeeccccCccc---ceecceeEeeC----CeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCC
Q 031361 79 EDWKLYFHRKGIGKMKKPSIDVGE---FMRRMPHVWDD----GALLLGHEKTSVFFVDAKSGGMICSHESDNSAST 147 (161)
Q Consensus 79 ddg~Lyald~~tG~~~~w~~~~~~---~V~ssP~v~~d----g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~ 147 (161)
-+|.|||++ .|++.|+.-.+.. ....++.+-.+ =+.++-+.++.|++++ .|++-+......-|+.
T Consensus 144 p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~~~~p~~~~~~ 215 (236)
T 1tl2_A 144 PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYEDYPPSYAYDN 215 (236)
T ss_dssp TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEEESCCCSTTCC
T ss_pred CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEEecCCccccCcc
Confidence 355888887 6666443332221 23345555421 2456788999999999 8988888666655554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.34 Score=42.22 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=42.4
Q ss_pred CCCEEEEEecC---------CeEEEEeCCCCceeEEEecCCCe---ecceEee-CCCeEEecCCCCEEEEEECCCCCeec
Q 031361 29 SGDLALVATLN---------GTVHLVDTKRGESRWSFSMGKPI---YSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 29 ~~~~V~vgs~D---------G~lyAvd~~tG~~~W~f~t~~~i---~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
.+..+++++.| +.++..|..+|+. .++.....- ..++... |+..+++..+ ++||.+|..+|+.++
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~ 148 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR 148 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE
Confidence 45666666654 7888999988886 344332211 2223333 6666666655 599999999998754
Q ss_pred cc
Q 031361 96 PS 97 (161)
Q Consensus 96 w~ 97 (161)
..
T Consensus 149 ~~ 150 (723)
T 1xfd_A 149 VV 150 (723)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=1.3 Score=39.19 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=63.2
Q ss_pred CCCEEEEEec-----CCeEEEEeCCC------CceeEEEecC--CCeecceEeeCCC-eEEecCC---CCEEEEEECCCC
Q 031361 29 SGDLALVATL-----NGTVHLVDTKR------GESRWSFSMG--KPIYSSFTRNDPD-FYVDVGE---DWKLYFHRKGIG 91 (161)
Q Consensus 29 ~~~~V~vgs~-----DG~lyAvd~~t------G~~~W~f~t~--~~i~ssp~~~d~~-~~V~~~d---dg~Lyald~~tG 91 (161)
.+..+++.+. +..||.+|..+ |+..|+--+. ..... +...+++ +++.... .++|+.+|..++
T Consensus 243 Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 4555666654 56889998877 6433432222 12222 2223444 4544432 347999999887
Q ss_pred CeeccccCc-c-c-ceecceeEeeCCeE-EEEeeCC--EEEEEECCCCcEEEEecCC
Q 031361 92 KMKKPSIDV-G-E-FMRRMPHVWDDGAL-LLGHEKT--SVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 92 ~~~~w~~~~-~-~-~V~ssP~v~~dg~V-yvGs~d~--~lyalDa~TG~~~W~~~~~ 142 (161)
....|..-+ . + ....+....+++.+ +..+.++ .|+.+|.++|+.+.+....
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 322 EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence 532232211 1 1 13334455533544 4566676 6899999899987776543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.5 Score=37.39 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=56.7
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCC-C--ee-cceEeeCCCeEEecCC-----C------CEEEEEECCCCCeecc
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGK-P--IY-SSFTRNDPDFYVDVGE-----D------WKLYFHRKGIGKMKKP 96 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~--i~-ssp~~~d~~~~V~~~d-----d------g~Lyald~~tG~~~~w 96 (161)
++++|. ..++++|..+++ |+..... | -. .+..+.++.+||.++. + ..++.+|+.+++-+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~--W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE--CYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTE--EEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCe--EecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 689999999887 9863321 1 11 2223346777775541 1 1388999988742111
Q ss_pred ccCccccee-cceeEeeCCeEE-EEeeC--------CEEEEEECCCCcEEEEec
Q 031361 97 SIDVGEFMR-RMPHVWDDGALL-LGHEK--------TSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 97 ~~~~~~~V~-ssP~v~~dg~Vy-vGs~d--------~~lyalDa~TG~~~W~~~ 140 (161)
+ .+...-. .+-++. ++.+| +|..+ ..++..|+.+++ |+--
T Consensus 83 ~-~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~ 132 (315)
T 4asc_A 83 P-PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGES 132 (315)
T ss_dssp C-CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEEC
T ss_pred C-CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeEC
Confidence 1 1111111 122334 46676 56543 469999999885 6543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.32 E-value=1.2 Score=35.15 Aligned_cols=111 Identities=7% Similarity=0.018 Sum_probs=62.2
Q ss_pred CCCEEEEEecCCeEEEEeCCC-------CceeEEEecC-CCeecceEe-eCCCeEEecCCCCEEEEEECCCC-Cee--cc
Q 031361 29 SGDLALVATLNGTVHLVDTKR-------GESRWSFSMG-KPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIG-KMK--KP 96 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~t-------G~~~W~f~t~-~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG-~~~--~w 96 (161)
.+..+..|+.||+|+..|..+ ++++-.++.. ++|.+ ... .++..++-++.|+.++..|..++ ... ..
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG-VAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEE-EEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEE-EEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 567889999999999998753 3344444322 23333 222 25566666677888988887433 210 11
Q ss_pred ccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCC--cEEEEec
Q 031361 97 SIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSG--GMICSHE 140 (161)
Q Consensus 97 ~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG--~~~W~~~ 140 (161)
.+..+ +.|.+--..-++..+..|+.|+++..-|..++ +.+..+.
T Consensus 148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~ 194 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194 (330)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence 12211 12222111113355778999999999888777 4444443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.6 Score=37.59 Aligned_cols=105 Identities=10% Similarity=-0.061 Sum_probs=58.8
Q ss_pred CCCEEEEEecCCeEEEEeCC-CCceeEEEe--cCCCeecceEe-eCCCe-EEecC--------------CCCEEEEEECC
Q 031361 29 SGDLALVATLNGTVHLVDTK-RGESRWSFS--MGKPIYSSFTR-NDPDF-YVDVG--------------EDWKLYFHRKG 89 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~-tG~~~W~f~--t~~~i~ssp~~-~d~~~-~V~~~--------------ddg~Lyald~~ 89 (161)
.+..+|+++.+ .++.+|.. +|++..... .++... ...+ .|+.. +++.. .++.+..++..
T Consensus 50 dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~ 127 (365)
T 1jof_A 50 ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS 127 (365)
T ss_dssp TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC
T ss_pred CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccC
Confidence 45678999888 99999987 898764432 222211 1122 24442 44322 35566666654
Q ss_pred -CCCeeccccCc----ccceecceeEeeCCe-EEEEee-CCEEEEEECC-CCcEE
Q 031361 90 -IGKMKKPSIDV----GEFMRRMPHVWDDGA-LLLGHE-KTSVFFVDAK-SGGMI 136 (161)
Q Consensus 90 -tG~~~~w~~~~----~~~V~ssP~v~~dg~-VyvGs~-d~~lyalDa~-TG~~~ 136 (161)
+|++. -.... ...-...+.++.||. +|+... ++.++..|.. +|++.
T Consensus 128 ~~g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 128 ETGKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp TTCCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CCCcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence 56652 11111 111122334554564 777653 6789999988 89864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.34 Score=42.95 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=61.0
Q ss_pred CCCEEEEEecCCe-------------EEEEeCCCCc----eeEEEecCCCeecceEee-CCCeEEecCCC----CEEEEE
Q 031361 29 SGDLALVATLNGT-------------VHLVDTKRGE----SRWSFSMGKPIYSSFTRN-DPDFYVDVGED----WKLYFH 86 (161)
Q Consensus 29 ~~~~V~vgs~DG~-------------lyAvd~~tG~----~~W~f~t~~~i~ssp~~~-d~~~~V~~~dd----g~Lyal 86 (161)
.+..+++++.|.. ||..+..+|+ ++.+.+.......++... |+..++....+ ..+|.+
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEE
Confidence 4557777887776 9999998887 444332222222334333 55544433322 378888
Q ss_pred ECCCCCeeccccCcccceecceeEeeCCeEEEEee----CCEEEEEECCCCc
Q 031361 87 RKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHE----KTSVFFVDAKSGG 134 (161)
Q Consensus 87 d~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~----d~~lyalDa~TG~ 134 (161)
+..+|+.++..... .-..+|+..+ +.+|+.+. +++|+.+|.++|+
T Consensus 258 ~~~~~~~~~l~~~~--~~~~~~~~~~-g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 258 RPGEKDFRLLVKGV--GAKYEVHAWK-DRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp CTTCSSCEEEEECS--SCCEEEEEET-TEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred cCCCCceEEeecCC--CceEEEEecC-CcEEEEECCCCCCCEEEEEeCCCCC
Confidence 87777654433222 2234555444 44777664 5899999998886
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.55 Score=37.81 Aligned_cols=59 Identities=14% Similarity=-0.024 Sum_probs=36.2
Q ss_pred CCEEEEEECCCCCeeccccCccccee------cceeEe-eCCeEEEEe----eCCEEEEEECCCCcEEEEe
Q 031361 80 DWKLYFHRKGIGKMKKPSIDVGEFMR------RMPHVW-DDGALLLGH----EKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 80 dg~Lyald~~tG~~~~w~~~~~~~V~------ssP~v~-~dg~VyvGs----~d~~lyalDa~TG~~~W~~ 139 (161)
+..|+.+|.++|++ ...+...+.+. ..-++. +++.+|+.. .++.++.+|.++|+.....
T Consensus 92 ~~~i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 92 VPKLVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp CCEEEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred CCeEEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 35888889888885 22222221110 112244 347899875 4789999999999864433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=94.18 E-value=0.3 Score=43.63 Aligned_cols=71 Identities=8% Similarity=-0.126 Sum_probs=47.1
Q ss_pred CCCCEEEEEecC---------CeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLN---------GTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~D---------G~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~ 97 (161)
..+..+++++.+ |.+|.+|..+|+.+- +.........|.. .|+..++++.+ ++||..+..+|+.+++.
T Consensus 71 pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEET-TEEEEESSTTSCCEECC
T ss_pred CCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEEC-CeEEEEECCCCceEEEc
Confidence 356677777776 777899999998653 3222222233444 36676667654 59999999999886665
Q ss_pred cCc
Q 031361 98 IDV 100 (161)
Q Consensus 98 ~~~ 100 (161)
..-
T Consensus 149 ~~g 151 (740)
T 4a5s_A 149 WTG 151 (740)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.75 Score=41.18 Aligned_cols=102 Identities=13% Similarity=0.182 Sum_probs=60.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC--C-----eecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK--P-----IYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~-----i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~ 99 (161)
.++.+++|+.+ -|+.+|..+++... +.... . |.+ .... ++. ++|+. ++ -|+.+|+.+++.+... .
T Consensus 155 ~~g~lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-i~~d~~~~~lWigt-~~-Gl~~~~~~~~~~~~~~-~ 228 (758)
T 3ott_A 155 KDNQIYVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNS-LLEDTTRQCVWIGT-EG-YLFQYFPSTGQIKQTE-A 228 (758)
T ss_dssp TTCCEEEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEE-EEEETTTTEEEEEE-EE-EEEEEETTTTEEEEEE-E
T ss_pred CCCCEEEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEE-EEEECCCCEEEEEE-CC-CCeEEcCCCCeEEecc-C
Confidence 37899999965 59999998887542 22211 1 211 1121 233 67877 33 5999999888662221 1
Q ss_pred cccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEE
Q 031361 100 VGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W 137 (161)
.......+=+...+|.+++|+. +-++.+|..+++...
T Consensus 229 l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~~ 265 (758)
T 3ott_A 229 FHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQH 265 (758)
T ss_dssp EEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCEE
T ss_pred CCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEEE
Confidence 1111111112334588999995 579999999887643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.4 Score=42.51 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=58.6
Q ss_pred CCCEEEEEec-CC----eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCC----------------EEEEE
Q 031361 29 SGDLALVATL-NG----TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDW----------------KLYFH 86 (161)
Q Consensus 29 ~~~~V~vgs~-DG----~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg----------------~Lyal 86 (161)
.+..+.+++. +| .||-+|..+|+.+=....+.. .+++... |++.++++..+. ++|.+
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 213 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence 4444544444 44 899999999987532111111 2334433 666655554332 39999
Q ss_pred ECCCCCee-ccccCcc--cceecceeEeeCCe-EEEEee-----CCEEEEEECCC
Q 031361 87 RKGIGKMK-KPSIDVG--EFMRRMPHVWDDGA-LLLGHE-----KTSVFFVDAKS 132 (161)
Q Consensus 87 d~~tG~~~-~w~~~~~--~~V~ssP~v~~dg~-VyvGs~-----d~~lyalDa~T 132 (161)
+..+|+.. +.-++-. .....+|.++.||. +++.+. +..+|.+|..+
T Consensus 214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 98888631 1212211 12234566766664 566665 67999999987
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=93.55 E-value=1.4 Score=36.97 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=38.7
Q ss_pred CCCEEEEEecCC--eEEEEeCCCCceeEEE----e-cCCCeecceEee--CCCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLNG--TVHLVDTKRGESRWSF----S-MGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG--~lyAvd~~tG~~~W~f----~-t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
.++.+|+++.++ .|+.+|..++...-++ . ......+ .++. ++.+|+ +..++.+|.+|..++..
T Consensus 181 ~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~-iav~p~~g~lyv-~d~~~~I~~~d~~~~~~ 252 (409)
T 3hrp_A 181 DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGA-VALDETEEWLYF-VDSNKNFGRFNVKTQEV 252 (409)
T ss_dssp TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCB-CEECTTSSEEEE-ECTTCEEEEEETTTCCE
T ss_pred CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEE-EEEeCCCCeEEE-EECCCcEEEEECCCCCE
Confidence 456788888877 7999998877653333 1 1111111 2232 345666 43466899999888876
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.44 Score=40.22 Aligned_cols=102 Identities=8% Similarity=-0.151 Sum_probs=69.8
Q ss_pred CCCCEEEEEecCC-----eEEEEeCCCCceeEEEecCCCeecceEee-CC-CeEEecC---------CCCEEEEEECCCC
Q 031361 28 ESGDLALVATLNG-----TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVG---------EDWKLYFHRKGIG 91 (161)
Q Consensus 28 ~~~~~V~vgs~DG-----~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~-~~~V~~~---------ddg~Lyald~~tG 91 (161)
.....+||.+.++ +|+-+|..|++++=+++++..- ...+. |+ .+||... +++.+..+|+.|+
T Consensus 29 ~~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 29 AISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred CCCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 4668899998754 8999999999999999988642 23333 33 5787652 3568999999999
Q ss_pred CeeccccCccc----ceeccee---EeeC-CeEEEEee--CCEEEE--EECCC
Q 031361 92 KMKKPSIDVGE----FMRRMPH---VWDD-GALLLGHE--KTSVFF--VDAKS 132 (161)
Q Consensus 92 ~~~~w~~~~~~----~V~ssP~---v~~d-g~VyvGs~--d~~lya--lDa~T 132 (161)
++ ...+.+++ .+...|. ++.| ..+|+... ++.+.. ||++|
T Consensus 107 ~v-v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 107 LP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 99 44444431 0111232 3333 46899875 356777 89988
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.91 Score=40.58 Aligned_cols=101 Identities=11% Similarity=-0.085 Sum_probs=57.1
Q ss_pred CEEEEEecCCe--------------EEEEeCCCCc----eeEEEecCCCeecceEee-CCCeEEecC-----CCCEEEEE
Q 031361 31 DLALVATLNGT--------------VHLVDTKRGE----SRWSFSMGKPIYSSFTRN-DPDFYVDVG-----EDWKLYFH 86 (161)
Q Consensus 31 ~~V~vgs~DG~--------------lyAvd~~tG~----~~W~f~t~~~i~ssp~~~-d~~~~V~~~-----ddg~Lyal 86 (161)
+.+++++.|+. ||..+..+++ +++..........++... |+..++... ....+|.+
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence 67777777664 8888887776 333321111122333333 554433322 13489999
Q ss_pred ECCCC--C-eeccccCcccceecceeEeeCCeEEEEee----CCEEEEEECCCC
Q 031361 87 RKGIG--K-MKKPSIDVGEFMRRMPHVWDDGALLLGHE----KTSVFFVDAKSG 133 (161)
Q Consensus 87 d~~tG--~-~~~w~~~~~~~V~ssP~v~~dg~VyvGs~----d~~lyalDa~TG 133 (161)
|..+| + .+... ....-...|+..+++.+|+.+. +..||.+|.+++
T Consensus 300 d~~~~~~~~~~~l~--~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 300 RVTNGKIGPVTALI--PDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEETTEECCCEEEE--CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred ECCCCCCcccEEec--CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99888 4 32222 2221223444445567888776 446999999886
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=93.21 E-value=1 Score=38.36 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=51.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCC----CCEEEEEECCCCCeeccccCcccce
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGE----DWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~d----dg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
++.+|+++..+.|+.+|..+|+..--........ ..++ .++.+||-... ...++.++...+.. . ..... -
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~-~-~~~~~--~ 226 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT-E-RLSLC--N 226 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC-C-EEEEE--E
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECCCCee-c-ccccc--c
Confidence 4889999888899999998887653322111011 1111 13344443321 11233343322211 0 00011 1
Q ss_pred ecce---eEee-CCeEEEEe-eCCEEEEEECCCCcEEEE
Q 031361 105 RRMP---HVWD-DGALLLGH-EKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 105 ~ssP---~v~~-dg~VyvGs-~d~~lyalDa~TG~~~W~ 138 (161)
...| ++.. ++.+|+.. .++.++.+|+++|+....
T Consensus 227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~ 265 (433)
T 4hw6_A 227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE 265 (433)
T ss_dssp CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE
T ss_pred cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE
Confidence 1223 2332 47788776 456788888888877433
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.74 Score=41.95 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=53.1
Q ss_pred eEEEEeCCCCc--eeEEEecCCCe--------ecceEee--CCCe---EEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 41 TVHLVDTKRGE--SRWSFSMGKPI--------YSSFTRN--DPDF---YVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 41 ~lyAvd~~tG~--~~W~f~t~~~i--------~ssp~~~--d~~~---~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.|.|.|.++|+ ++|+|.+..+- ..++.+. |+|+ +|++. . ++| ++|+. .|....+- -
T Consensus 293 ~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs---~--~iD-~dG~~-L~st~~gH--G 363 (591)
T 2zux_A 293 MLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGS---M--AVD-HDGKG-MYSTGLGH--G 363 (591)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETT---E--EEC-TTSCE-EEECSCCC--C
T ss_pred EEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEee---e--EEC-CCCCE-eeeCCCCC--C
Confidence 49999999997 59999987542 1344554 3332 44433 2 233 67888 77665431 1
Q ss_pred cceeEee-----CCe-EEEEeeC-----CEEEEEECCCCcEEEEecC
Q 031361 106 RMPHVWD-----DGA-LLLGHEK-----TSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 106 ssP~v~~-----dg~-VyvGs~d-----~~lyalDa~TG~~~W~~~~ 141 (161)
-+..+.+ .|. ||...++ +..| .|++||+++|++..
T Consensus 364 Da~hv~dldP~r~GlEv~~~~E~~~~~~G~~~-~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 364 DALHTGDLDPGRPGLEVFQVHEDKNAKYGLSF-RDAATGKILWGVYA 409 (591)
T ss_dssp SCEEEECCCTTSSSCEEEEECCCTTSSCSEEE-EETTTCCEEEEECC
T ss_pred CeeEEeecCCCCCCcEEEEEecCCCCCCccEE-EECCCCcEEEEcCC
Confidence 1122221 122 5554443 3434 79999999999865
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.71 Score=40.89 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=56.9
Q ss_pred CeEEEEeCCCCcee-EEEecCCCee-cceEee-CCCeEEecCCCCE-------------EEEEECCCCCee-ccccCc--
Q 031361 40 GTVHLVDTKRGESR-WSFSMGKPIY-SSFTRN-DPDFYVDVGEDWK-------------LYFHRKGIGKMK-KPSIDV-- 100 (161)
Q Consensus 40 G~lyAvd~~tG~~~-W~f~t~~~i~-ssp~~~-d~~~~V~~~ddg~-------------Lyald~~tG~~~-~w~~~~-- 100 (161)
..||-+|..+|+.+ =. .. ..+. .++... |+..+++...+.. +|.++..+|... +.-++.
T Consensus 147 ~~i~v~dl~tg~~~~~~-~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVD-VI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp CEEEEEETTTCCBCSSC-CB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred EEEEEEECCCCCCcCCc-cc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 47999999999864 11 01 1111 334433 6666766654433 999999888631 111221
Q ss_pred ccceecceeEeeCCe-EEEEeeCC----EEEEEECCCCcEEEE
Q 031361 101 GEFMRRMPHVWDDGA-LLLGHEKT----SVFFVDAKSGGMICS 138 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~-VyvGs~d~----~lyalDa~TG~~~W~ 138 (161)
......+|..+.||. +++.+.++ .+|.+|..+|+...-
T Consensus 225 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l 267 (695)
T 2bkl_A 225 DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL 267 (695)
T ss_dssp CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence 112344677766664 66666665 899998888875543
|
| >2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.35 Score=44.32 Aligned_cols=94 Identities=21% Similarity=0.238 Sum_probs=54.7
Q ss_pred CeEEEEeCCCCc--eeEEEecCCCe--------ecceEee--CCC---eEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 40 GTVHLVDTKRGE--SRWSFSMGKPI--------YSSFTRN--DPD---FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 40 G~lyAvd~~tG~--~~W~f~t~~~i--------~ssp~~~--d~~---~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
..|.|.|.++|+ ++|+|.+..+- ..++.+. |+| =+|++. . ++| ++|+. .|....+-
T Consensus 296 ~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs---~--~iD-~dG~~-L~st~~gH-- 366 (620)
T 2zuy_A 296 TVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA---M--AVD-HDGTG-LYSTGLGH-- 366 (620)
T ss_dssp CEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT---E--EEC-TTSSE-EEECSCCC--
T ss_pred eeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCCCceeEEEee---e--EEC-CCCCE-EeecCCCC--
Confidence 568899998884 79999986542 1334444 332 244433 2 334 67888 77765521
Q ss_pred ecceeEee-----CCeEEEEe-eC----CEEEEEECCCCcEEEEecCC
Q 031361 105 RRMPHVWD-----DGALLLGH-EK----TSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 105 ~ssP~v~~-----dg~VyvGs-~d----~~lyalDa~TG~~~W~~~~~ 142 (161)
--+..+.+ .|.-+++. ++ --....|++||+++|+....
T Consensus 367 GDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 367 GDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp CSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCc
Confidence 11122321 14344443 32 14455799999999999764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=92.88 E-value=2.3 Score=34.10 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=51.6
Q ss_pred cCCeEEEEeCC-CCceeEEEe-----cCCCeecceEee-CCC-eEEecCCCCEEEEEECC-CCCeecc-ccCcccce-ec
Q 031361 38 LNGTVHLVDTK-RGESRWSFS-----MGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKG-IGKMKKP-SIDVGEFM-RR 106 (161)
Q Consensus 38 ~DG~lyAvd~~-tG~~~W~f~-----t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~-tG~~~~w-~~~~~~~V-~s 106 (161)
.+|.++.++.. +|++.=+.. .+..++ ..... |+. +|+....+..++.++.. +|++... .+.+. . ..
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~~g~ 193 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP--DPGD 193 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS--STTC
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcce-EEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC--CCCC
Confidence 68888877775 576543332 122222 22332 454 44444445589988887 8876221 11110 1 12
Q ss_pred ce---eEeeCC-eEEEEee-CCEEEE--EECCCCcEE
Q 031361 107 MP---HVWDDG-ALLLGHE-KTSVFF--VDAKSGGMI 136 (161)
Q Consensus 107 sP---~v~~dg-~VyvGs~-d~~lya--lDa~TG~~~ 136 (161)
.| +++.|| .+|+.+. ++++.. +|.++|++.
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 24 344455 5788775 566655 466789875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=92.86 E-value=1.1 Score=36.52 Aligned_cols=110 Identities=5% Similarity=-0.095 Sum_probs=60.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEee-CC-CeEEecCCCCEEEEEECCCCCeeccccCccc---
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE--- 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~-d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~--- 102 (161)
.+.++..|+.|++|+.-|..++++.-++.. .+++.+ .... ++ ..++-+..|+.+...|..+++. .....-..
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~-~~~~~~~~~~~ 232 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGIS-VQFRPSNPNQLIVGERNGNIRIFDWTLNLS-AEENSQTELVK 232 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEE-EEEETTEEEEEEEEETTSEEEEEETTCCC-----------CS
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEE-EEECCCCCceEEecCCCCEEEEEECCCCcc-cccccccCCcc
Confidence 455777899999999999988887766544 445543 3333 33 3455556788999999988866 22211100
Q ss_pred -----------------------ceecceeE-eeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 103 -----------------------FMRRMPHV-WDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 103 -----------------------~V~ssP~v-~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.|.+--.. .+...++.++.|+++..-|..+|+....+.
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~ 294 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS 294 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe
Confidence 01110011 122457789999999999999888766554
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.44 E-value=2.7 Score=32.68 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=57.2
Q ss_pred CCEEEEEecC----CeEEEEeCCCCceeEEEecCCC--ee-cceEeeCCCeEEecCCC-----CEEEEEECCCCCeeccc
Q 031361 30 GDLALVATLN----GTVHLVDTKRGESRWSFSMGKP--IY-SSFTRNDPDFYVDVGED-----WKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 30 ~~~V~vgs~D----G~lyAvd~~tG~~~W~f~t~~~--i~-ssp~~~d~~~~V~~~dd-----g~Lyald~~tG~~~~w~ 97 (161)
+.++++|..+ ..++++|..+++ |+--..-| -. .+....++.+||.++.+ ..++.+|+.+.+-...+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER--WHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc--EeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3444555543 368999998874 88654322 12 22233467777765522 35889998877432211
Q ss_pred cCcccc-eecceeEeeCCeEE-EEeeCC-----EEEEEECCCCcEE
Q 031361 98 IDVGEF-MRRMPHVWDDGALL-LGHEKT-----SVFFVDAKSGGMI 136 (161)
Q Consensus 98 ~~~~~~-V~ssP~v~~dg~Vy-vGs~d~-----~lyalDa~TG~~~ 136 (161)
.+... ...+-++.+ +.+| +|..++ .++..|.++.+..
T Consensus 94 -~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 94 -NMRDRRSTLGAAVLN-GLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp -CCSSCCBSCEEEEET-TEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred -CCCccccceEEEEEC-CEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 11111 111222344 6676 576553 6889999887643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=92.41 E-value=1.6 Score=34.18 Aligned_cols=104 Identities=9% Similarity=-0.033 Sum_probs=60.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCc--eeEEEecC-CCeecceEee-C--CCeEEecCCCCEEEEEECCCCCee--ccccCc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGE--SRWSFSMG-KPIYSSFTRN-D--PDFYVDVGEDWKLYFHRKGIGKMK--KPSIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~--~~W~f~t~-~~i~ssp~~~-d--~~~~V~~~ddg~Lyald~~tG~~~--~w~~~~ 100 (161)
.+..++.|+.||+|+.-|.++|+ ..-++... .+|.+ .... + +..++-+..|+.++..|..++... .-.+..
T Consensus 70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~-v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNS-VCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCE-EEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEE-EEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 36789999999999999999884 44444322 23332 2222 3 345666667778888887765320 011111
Q ss_pred cc----ceecceeEe--------------eCCeEEEEeeCCEEEEEECCCC
Q 031361 101 GE----FMRRMPHVW--------------DDGALLLGHEKTSVFFVDAKSG 133 (161)
Q Consensus 101 ~~----~V~ssP~v~--------------~dg~VyvGs~d~~lyalDa~TG 133 (161)
+. .+.-+|... ....+..|+.|++++.-|..++
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 11 122233210 0134677899999888887655
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.33 E-value=1.9 Score=33.46 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=59.2
Q ss_pred CCCEEE-EEecC-----CeEEEEeCCCCc-eeEEEecCCCe--e-cceEeeCCCeEEecCCC-----CEEEEEECCCCCe
Q 031361 29 SGDLAL-VATLN-----GTVHLVDTKRGE-SRWSFSMGKPI--Y-SSFTRNDPDFYVDVGED-----WKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~-vgs~D-----G~lyAvd~~tG~-~~W~f~t~~~i--~-ssp~~~d~~~~V~~~dd-----g~Lyald~~tG~~ 93 (161)
.++.+| +|..+ ..++.+|..+++ ..|+.-..-|. . .+..+.++.+||.++.+ ..++.+|..+.+-
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 455555 45544 368999998886 55887543321 1 12223467777765421 3689999887643
Q ss_pred eccccCccccee-cceeEeeCCeEE-EEeeC-----CEEEEEECCCCcE
Q 031361 94 KKPSIDVGEFMR-RMPHVWDDGALL-LGHEK-----TSVFFVDAKSGGM 135 (161)
Q Consensus 94 ~~w~~~~~~~V~-ssP~v~~dg~Vy-vGs~d-----~~lyalDa~TG~~ 135 (161)
.... .+..... .+-++. ++.+| +|..+ ..++..|+++++.
T Consensus 141 ~~~~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 141 SMLG-DMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp EEEE-ECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred EECC-CCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 1111 1112222 222334 46677 46543 5799999998843
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.66 Score=39.33 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=51.8
Q ss_pred CCeEEEEeCC---CCceeEEEecCCCe----------ecceE--ee--CCCeEEecCCC-CEEEEEECCCCCeeccccCc
Q 031361 39 NGTVHLVDTK---RGESRWSFSMGKPI----------YSSFT--RN--DPDFYVDVGED-WKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 39 DG~lyAvd~~---tG~~~W~f~t~~~i----------~ssp~--~~--d~~~~V~~~dd-g~Lyald~~tG~~~~w~~~~ 100 (161)
+..|+++|.. ||+++|........ +..++ +. +++.||-..-. +.++.+++.--...-|..+.
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~ 178 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES 178 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence 6889999999 99999999854211 11121 11 45788844445 68998887632343343222
Q ss_pred cc---ceecce-eEeeCC-eEEEEeeCCEEEEEECC
Q 031361 101 GE---FMRRMP-HVWDDG-ALLLGHEKTSVFFVDAK 131 (161)
Q Consensus 101 ~~---~V~ssP-~v~~dg-~VyvGs~d~~lyalDa~ 131 (161)
.. .+--.- ++..|+ .+++-...+.|+++|.+
T Consensus 179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 11 000011 122123 44444347778888876
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.16 E-value=3.5 Score=32.44 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=55.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCc--eeEEEecC---CCeecceEeeCCCeEEecCCCCEEEEEECCCCCee------cccc
Q 031361 30 GDLALVATLNGTVHLVDTKRGE--SRWSFSMG---KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK------KPSI 98 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~--~~W~f~t~---~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~------~w~~ 98 (161)
.+.+..|+.||+|+..|..+++ ..-.+..+ .+|.+-.-..++..++-++.|+.+...|..++... .-.+
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 103 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII 103 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE
Confidence 3488999999999999998864 33344222 23433211225566666666778877776432210 1111
Q ss_pred Ccc-cceecceeEeeCCeEEEEeeCCEEEEEECCC
Q 031361 99 DVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 99 ~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~T 132 (161)
..+ +.|.+--..-+...+..|+.|++++.-|..+
T Consensus 104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp C----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 111 1222211111224577899999999999843
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=2.1 Score=39.02 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=63.2
Q ss_pred CeEEEEeCCCCceeEEEecCCCe-----ecceEeeC--C----CeEEecCCC---------------------------C
Q 031361 40 GTVHLVDTKRGESRWSFSMGKPI-----YSSFTRND--P----DFYVDVGED---------------------------W 81 (161)
Q Consensus 40 G~lyAvd~~tG~~~W~f~t~~~i-----~ssp~~~d--~----~~~V~~~dd---------------------------g 81 (161)
..|.|++.. |+.+|++..+..+ +.++++.| + .+++...++ .
T Consensus 151 ~~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE 229 (591)
T 2zux_A 151 VLIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE 229 (591)
T ss_dssp CEEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred cEEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence 468899995 9999999876433 34455552 2 244443322 1
Q ss_pred EEEEEECCCCCeeccccCcc---cce---------------ecceeEeeC-CeEEEEe---eCCEEEEEECCCCcE--EE
Q 031361 82 KLYFHRKGIGKMKKPSIDVG---EFM---------------RRMPHVWDD-GALLLGH---EKTSVFFVDAKSGGM--IC 137 (161)
Q Consensus 82 ~Lyald~~tG~~~~w~~~~~---~~V---------------~ssP~v~~d-g~VyvGs---~d~~lyalDa~TG~~--~W 137 (161)
.|+.+|-.||++ .+.+... ..+ .+.+.+..+ ..++++. ..+.+.|.|.++|++ +|
T Consensus 230 yL~vfdG~TG~~-l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W 308 (591)
T 2zux_A 230 YLTVFQGSTGKE-LVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLW 308 (591)
T ss_dssp EEEEEETTTCCE-EEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCCE-EecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEE
Confidence 489999999999 5554321 111 111112211 2355544 456799999999975 89
Q ss_pred EecCCCC
Q 031361 138 SHESDNS 144 (161)
Q Consensus 138 ~~~~~~~ 144 (161)
+|+....
T Consensus 309 ~~d~~~~ 315 (591)
T 2zux_A 309 TLDSSKS 315 (591)
T ss_dssp EEETTST
T ss_pred EecCCCC
Confidence 9988653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.09 E-value=3.3 Score=32.26 Aligned_cols=104 Identities=8% Similarity=-0.074 Sum_probs=59.7
Q ss_pred CCEEEEEec--CCeEEEEeCCCCceeEEEecCCCe--e-cceEeeCCCeEEecCCC----CEEEEEECCCCCeeccccCc
Q 031361 30 GDLALVATL--NGTVHLVDTKRGESRWSFSMGKPI--Y-SSFTRNDPDFYVDVGED----WKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 30 ~~~V~vgs~--DG~lyAvd~~tG~~~W~f~t~~~i--~-ssp~~~d~~~~V~~~dd----g~Lyald~~tG~~~~w~~~~ 100 (161)
+-++++|.. ...++++|..+++ |+.-..-|. . .+..+.++.+||.++.+ ..++.+|+.+++-.... .+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~-~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL-GP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTE--EEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE-CC
T ss_pred ceEEEEeCCCCCceEEEecCCCCC--EecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC-CC
Confidence 345556654 3579999998875 886543221 1 22233467777765532 47899999887431111 11
Q ss_pred ccceec-ceeEeeCCeEE-EEeeC------CEEEEEECCCCcEEEEe
Q 031361 101 GEFMRR-MPHVWDDGALL-LGHEK------TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 101 ~~~V~s-sP~v~~dg~Vy-vGs~d------~~lyalDa~TG~~~W~~ 139 (161)
...-.. +-++. ++.+| +|..+ ..++.+|..+.+ |+.
T Consensus 89 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~ 132 (306)
T 3ii7_A 89 PTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTES--WHT 132 (306)
T ss_dssp SSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEE
T ss_pred CccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEe
Confidence 211111 22234 46676 56654 469999999886 544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=1.5 Score=39.03 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=58.3
Q ss_pred CCCEEEEEec-C---CeEEEEeCCCCce-eEEEecCC--CeecceEeeCCCeEE-ecCCCC--EEEEEECCCCCeecccc
Q 031361 29 SGDLALVATL-N---GTVHLVDTKRGES-RWSFSMGK--PIYSSFTRNDPDFYV-DVGEDW--KLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 29 ~~~~V~vgs~-D---G~lyAvd~~tG~~-~W~f~t~~--~i~ssp~~~d~~~~V-~~~ddg--~Lyald~~tG~~~~w~~ 98 (161)
.++.+|+-+. | +.|+.+|..+++. .|+--+.. ... +... +++.++ ...+++ +|+.++...+..+...+
T Consensus 290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~-~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~ 367 (693)
T 3iuj_A 290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHS-GSGYLFAEYMVDATARVEQFDYEGKRVREVAL 367 (693)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEE-ETTEEEEEEEETTEEEEEEECTTSCEEEEECC
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEE-ECCEEEEEEEECCeeEEEEEECCCCeeEEeec
Confidence 3556665553 3 6899999988765 57632222 122 3222 344333 333343 68888877555433333
Q ss_pred CcccceecceeEe-eCCeEEEEeeC----CEEEEEECCCCcEEE
Q 031361 99 DVGEFMRRMPHVW-DDGALLLGHEK----TSVFFVDAKSGGMIC 137 (161)
Q Consensus 99 ~~~~~V~ssP~v~-~dg~VyvGs~d----~~lyalDa~TG~~~W 137 (161)
.-...+. .+... +++.+++...+ +++|.+|.++|+...
T Consensus 368 p~~~~~~-~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~ 410 (693)
T 3iuj_A 368 PGLGSVS-GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL 410 (693)
T ss_dssp SSSSEEE-ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred CCCceEE-eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence 2111121 12111 33557776655 899999999998653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.95 E-value=1.7 Score=33.81 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=57.6
Q ss_pred CCCEEEEE-ec-------CCeEEEEeCCCCceeEEEecCCC--eec-ceEeeCCCeEEecCCC-----CEEEEEECCCCC
Q 031361 29 SGDLALVA-TL-------NGTVHLVDTKRGESRWSFSMGKP--IYS-SFTRNDPDFYVDVGED-----WKLYFHRKGIGK 92 (161)
Q Consensus 29 ~~~~V~vg-s~-------DG~lyAvd~~tG~~~W~f~t~~~--i~s-sp~~~d~~~~V~~~dd-----g~Lyald~~tG~ 92 (161)
.++.+|+. .. -..++.+|..++ .|+.-..-| ... +..+.++.+||.++.+ ..++.+|..+++
T Consensus 154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 154 VGGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ETTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 46666653 22 235888898766 487653322 222 2233467777765432 368999998763
Q ss_pred eeccccCcccc-eecceeEeeCCeEE-EEeeC-----CEEEEEECCCCcEEEEe
Q 031361 93 MKKPSIDVGEF-MRRMPHVWDDGALL-LGHEK-----TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 93 ~~~w~~~~~~~-V~ssP~v~~dg~Vy-vGs~d-----~~lyalDa~TG~~~W~~ 139 (161)
-.... .+... ...+-++. ++.+| +|..+ ..+++.|+++.+ |+.
T Consensus 232 W~~~~-~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 232 WRQVA-DMNMCRRNAGVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp EEEEC-CCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred EeeCC-CCCCccccCeEEEE-CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 21111 11111 12222334 46676 56654 358999999885 654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=91.81 E-value=1.9 Score=36.77 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=65.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+..++++ .+|.|+.+|..+-...++... ..++.. .....++ +.-+..+|.|+.+|.+++.... ....|. +
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~-i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs-~ 167 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQ-LKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVT-S 167 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEE-EEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEE-E
T ss_pred CCCEEEEE-cCCcEEEEEchhhhccCccceeecceee-EEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCce-E
Confidence 35667777 889999999887777776543 223321 1111223 3334567799999998887632 222233 2
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcE--EEEe
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGM--ICSH 139 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~--~W~~ 139 (161)
=+.+.+| ..+|..|+++...++.+++. +.++
T Consensus 168 v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 168 FDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp EEECSSE-EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEEcCCc-eEEEEcCCcEEEEcCCCcccccccee
Confidence 2334446 78999999999999988886 5565
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.80 E-value=2.7 Score=32.56 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=57.2
Q ss_pred CCCEEEE-EecC-----CeEEEEeCCCCceeEEEecCCC--eec-ceEeeCCCeEEecCCC-----CEEEEEECCCCCee
Q 031361 29 SGDLALV-ATLN-----GTVHLVDTKRGESRWSFSMGKP--IYS-SFTRNDPDFYVDVGED-----WKLYFHRKGIGKMK 94 (161)
Q Consensus 29 ~~~~V~v-gs~D-----G~lyAvd~~tG~~~W~f~t~~~--i~s-sp~~~d~~~~V~~~dd-----g~Lyald~~tG~~~ 94 (161)
.++.+|+ |..+ ..++.+|..++ .|+.-..-| ... +....++.+||.++.+ ..++.+|..+.+-.
T Consensus 158 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 158 ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 4555554 4333 45888898776 687654322 222 2233466777765432 36899999877431
Q ss_pred ccccCcccc-eecceeEeeCCeEE-EEeeC-----CEEEEEECCCCcEE
Q 031361 95 KPSIDVGEF-MRRMPHVWDDGALL-LGHEK-----TSVFFVDAKSGGMI 136 (161)
Q Consensus 95 ~w~~~~~~~-V~ssP~v~~dg~Vy-vGs~d-----~~lyalDa~TG~~~ 136 (161)
... .+... ...+-++.+ +.+| +|..+ ..++..|+++.+..
T Consensus 236 ~~~-~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 236 TVT-SMTTPRCYVGATVLR-GRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEC-CCSSCCBSCEEEEET-TEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred ECC-CCCCcccceeEEEEC-CEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 111 11111 222333454 6666 56554 47899999987633
|
| >2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.63 E-value=2.1 Score=39.26 Aligned_cols=101 Identities=15% Similarity=0.298 Sum_probs=61.4
Q ss_pred eEEEEeCCCCceeEEEecCCCe-----ecceEeeC--C----CeEEecCCC---------------------------CE
Q 031361 41 TVHLVDTKRGESRWSFSMGKPI-----YSSFTRND--P----DFYVDVGED---------------------------WK 82 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~~i-----~ssp~~~d--~----~~~V~~~dd---------------------------g~ 82 (161)
.|.|++.. |+.+|++..+..+ +.++++.| + .+++...++ ..
T Consensus 156 ~l~aY~ld-G~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~ey 234 (620)
T 2zuy_A 156 LIDAYKLD-GTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEY 234 (620)
T ss_dssp EEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeE
Confidence 68899995 9999999876433 34555552 2 245543322 34
Q ss_pred EEEEECCCCCeeccccCc--c-c---------------ceecceeEeeC-CeEEEEe---eCCEEEEEECCCCc--EEEE
Q 031361 83 LYFHRKGIGKMKKPSIDV--G-E---------------FMRRMPHVWDD-GALLLGH---EKTSVFFVDAKSGG--MICS 138 (161)
Q Consensus 83 Lyald~~tG~~~~w~~~~--~-~---------------~V~ssP~v~~d-g~VyvGs---~d~~lyalDa~TG~--~~W~ 138 (161)
|+.+|-.||+. .+++.. . . +..+.+.+..+ ..++++. ....+.|.|.++|+ ..|+
T Consensus 235 L~vfdG~TG~~-l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~ 313 (620)
T 2zuy_A 235 LTVFKGETGEA-LTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWV 313 (620)
T ss_dssp EEEEETTTCCE-EEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEcCCCcce-eeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeE
Confidence 88899999998 554432 1 0 01111222111 2345543 45679999999995 6899
Q ss_pred ecCCC
Q 031361 139 HESDN 143 (161)
Q Consensus 139 ~~~~~ 143 (161)
|+...
T Consensus 314 ~ds~~ 318 (620)
T 2zuy_A 314 FDSNQ 318 (620)
T ss_dssp EETTS
T ss_pred ecCCC
Confidence 98764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.60 E-value=3.1 Score=32.66 Aligned_cols=93 Identities=16% Similarity=0.034 Sum_probs=54.0
Q ss_pred CeEEEEeCCCCceeEEEecCCC--eecc-eEeeCCCeEEecCC--C----CEEEEEECCCCCeeccccC--ccccee-cc
Q 031361 40 GTVHLVDTKRGESRWSFSMGKP--IYSS-FTRNDPDFYVDVGE--D----WKLYFHRKGIGKMKKPSID--VGEFMR-RM 107 (161)
Q Consensus 40 G~lyAvd~~tG~~~W~f~t~~~--i~ss-p~~~d~~~~V~~~d--d----g~Lyald~~tG~~~~w~~~--~~~~V~-ss 107 (161)
..++.+|..+++ |+.-..-| ...+ ..+.++.+||.++. + ..++.+|+.+. .|..- +..... .+
T Consensus 117 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~ 191 (315)
T 4asc_A 117 DSVMCYDRLSFK--WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF---EWKELAPMQTARSLFG 191 (315)
T ss_dssp CCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTT---EEEECCCCSSCCBSCE
T ss_pred ceEEEECCCCCc--EeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCC---eEEECCCCCCchhceE
Confidence 358999998774 88754322 2222 23346677776543 1 36899999876 34321 222221 22
Q ss_pred eeEeeCCeEE-EEeeCC-----EEEEEECCCCcEEEEec
Q 031361 108 PHVWDDGALL-LGHEKT-----SVFFVDAKSGGMICSHE 140 (161)
Q Consensus 108 P~v~~dg~Vy-vGs~d~-----~lyalDa~TG~~~W~~~ 140 (161)
-++.+ +.+| +|..++ .+++.|++++ .|+.-
T Consensus 192 ~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~ 227 (315)
T 4asc_A 192 ATVHD-GRIIVAAGVTDTGLTSSAEVYSITDN--KWAPF 227 (315)
T ss_dssp EEEET-TEEEEEEEECSSSEEEEEEEEETTTT--EEEEE
T ss_pred EEEEC-CEEEEEeccCCCCccceEEEEECCCC--eEEEC
Confidence 23444 6666 576554 6999999988 45543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.06 E-value=4.2 Score=31.96 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=55.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-C--CCee-cceEeeCCCeEEecCC----CC-------EEEEEECCCCCe
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-G--KPIY-SSFTRNDPDFYVDVGE----DW-------KLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~--~~i~-ssp~~~d~~~~V~~~d----dg-------~Lyald~~tG~~ 93 (161)
.++.+|+-.-. .++++|..+++ |+... . .+-. .+....++.+||.++. ++ .++.+|+.+++-
T Consensus 14 ~~~~i~~~GG~-~~~~yd~~~~~--W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 14 VKDLILLVNDT-AAVAYDPMENE--CYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEEEEEECSS-EEEEEETTTTE--EEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred ecchhhhcccc-ceEEECCCCCc--eecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 44555554433 48999999886 77632 1 1211 2223346677776551 11 288899887743
Q ss_pred eccccCccccee-cceeEeeCCeEE-EEeeC-------CEEEEEECCCCcE
Q 031361 94 KKPSIDVGEFMR-RMPHVWDDGALL-LGHEK-------TSVFFVDAKSGGM 135 (161)
Q Consensus 94 ~~w~~~~~~~V~-ssP~v~~dg~Vy-vGs~d-------~~lyalDa~TG~~ 135 (161)
+..+ .+...-. .+-++. ++.+| +|..+ ..++..|..+.+.
T Consensus 91 ~~~~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 139 (318)
T 2woz_A 91 VGLP-PLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139 (318)
T ss_dssp EECS-CBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE
T ss_pred EECC-CCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCE
Confidence 2221 1221111 122234 46676 56654 3689999988863
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=90.88 E-value=3.3 Score=33.65 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=61.5
Q ss_pred CCCEEEEEec--CCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCC--------------CCEEEEEECCCCC
Q 031361 29 SGDLALVATL--NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGE--------------DWKLYFHRKGIGK 92 (161)
Q Consensus 29 ~~~~V~vgs~--DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~d--------------dg~Lyald~~tG~ 92 (161)
.++.+|+.+. ++.||.++. +|....++..+.+ +....+++++.|+.+ ...||.++...+.
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~-dg~~~~~l~~~~~---~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~ 99 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNI-DGSNIHKLSNDTA---MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG 99 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEET-TSCSCEEEEEEEE---EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred eCCEEEEEeCCCCceEEEEcC-CCCCCEEccCCce---eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence 6788888763 678888887 5766777765442 233346666556542 3579999987765
Q ss_pred eeccccCcccceecceeEeeCCeEEEEe----eCCEEEEEECCCCcEEEEe
Q 031361 93 MKKPSIDVGEFMRRMPHVWDDGALLLGH----EKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 93 ~~~w~~~~~~~V~ssP~v~~dg~VyvGs----~d~~lyalDa~TG~~~W~~ 139 (161)
.++..-... ..-.+. ++.+|+-. .+..||.++..... ..+.
T Consensus 100 ~~~l~~~~~----~~~s~~-g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~l 144 (302)
T 3s25_A 100 STVLDPDPC----IYASLI-GNYIYYLHYDTQTATSLYRIRIDGEE-KKKI 144 (302)
T ss_dssp CEEEECSCE----EEEEEE-TTEEEEEEESSSSCEEEEEEETTSCC-CEEE
T ss_pred ceEeecCCc----cEEEEe-CCEEEEEeecCCCCceEEEEECCCCC-eEEE
Confidence 433322221 112234 47788765 46789999976433 3343
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=90.86 E-value=2.7 Score=37.45 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=56.1
Q ss_pred CCCEEEEE-ecCC----eEEEEeCCCCceeEEEecCCCee-cceEee-CCCeEEecCCC--------------CEEEEEE
Q 031361 29 SGDLALVA-TLNG----TVHLVDTKRGESRWSFSMGKPIY-SSFTRN-DPDFYVDVGED--------------WKLYFHR 87 (161)
Q Consensus 29 ~~~~V~vg-s~DG----~lyAvd~~tG~~~W~f~t~~~i~-ssp~~~-d~~~~V~~~dd--------------g~Lyald 87 (161)
.+..+.++ +.+| .||-+|..+|+.+=.. . ..+. +++... | +.+++...+ ..+|.++
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~ 249 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-L-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHR 249 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-E-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-C-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEE
Confidence 44444444 4444 4999999999875321 1 1111 233332 4 555554332 2488888
Q ss_pred CCCCCee-ccccCccc--ceecceeEeeCCe-EEEEeeC-----CEEEEEECCCC
Q 031361 88 KGIGKMK-KPSIDVGE--FMRRMPHVWDDGA-LLLGHEK-----TSVFFVDAKSG 133 (161)
Q Consensus 88 ~~tG~~~-~w~~~~~~--~V~ssP~v~~dg~-VyvGs~d-----~~lyalDa~TG 133 (161)
..++... +.-+...+ ....+|.++.||. +++.+.+ ..+|.+|+.+|
T Consensus 250 lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 250 LGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred CCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 8877621 11122111 1245677777774 6666654 48999999988
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=90.79 E-value=6.5 Score=32.89 Aligned_cols=64 Identities=5% Similarity=-0.092 Sum_probs=43.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCe
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
..+..+..++.||+|+..|.++++....... ...+.+ ... .++..++-+..||.++.+|.+ |+.
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~-v~wspdg~~lasgs~dg~v~iwd~~-~~~ 225 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS-VCWSPKGKQLAVGKQNGTVVQYLPT-LQE 225 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE-EEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred CCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE-EEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence 3467888999999999999999977765543 233333 222 255555545567799999987 654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.54 E-value=2.1 Score=38.89 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=65.4
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC------eecceEe-eCCCeEEecCCCCEEEEEECCCCCe------e
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP------IYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKM------K 94 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~------i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~------~ 94 (161)
..+..+-+++.||.++..|..+ .+..-.... +. +.+. .|+....-+++||.+...|..+|++ .
T Consensus 95 PdG~~LAs~s~dg~V~iwd~~~---~l~~l~~~~~~~~~sv~-svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~ 170 (588)
T 2j04_A 95 PIDDWMAVLSNNGNVSVFKDNK---MLTNLDSKGNLSSRTYH-CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYF 170 (588)
T ss_dssp SSSSCEEEEETTSCEEEEETTE---EEEECCCSSCSTTTCEE-EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCc---eeeeccCCCccccccEE-EEEEcCCCCEEEEEcCCCEEEEEECCCCcccccccee
Confidence 3778888999999999999644 444322222 33 2233 2566655556788999999988863 0
Q ss_pred ccccCcc-----cceecceeEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 95 KPSIDVG-----EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 95 ~w~~~~~-----~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
...++.+ ..|.+- +.+.|| +..++.|.+++..|..+++.
T Consensus 171 l~ti~~~~~gh~~~V~sV-awSPdg-Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 171 ESSIRLSDAGSKDWVTHI-VWYEDV-LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp EEEEECSCTTCCCCEEEE-EEETTE-EEEEETTCCEEEECCCSSSS
T ss_pred eeeeecccccccccEEEE-EEcCCc-EEEEeCCCeEEEEECCCCcc
Confidence 1122111 123332 234457 88899999999999998884
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=1.9 Score=38.37 Aligned_cols=107 Identities=12% Similarity=0.046 Sum_probs=58.2
Q ss_pred CCCEEEEEecCCe-------------EEEEeCCCCc----eeEEEec-CCCeecceEee-CCCeE-EecC---CCCEEEE
Q 031361 29 SGDLALVATLNGT-------------VHLVDTKRGE----SRWSFSM-GKPIYSSFTRN-DPDFY-VDVG---EDWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~DG~-------------lyAvd~~tG~----~~W~f~t-~~~i~ssp~~~-d~~~~-V~~~---ddg~Lya 85 (161)
.++.+++++.|.. ||..+..++. ++.+.+. ......++... |+..+ +... ....+|.
T Consensus 184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 4566777777643 6666665553 2332211 11112223332 45433 2222 2358999
Q ss_pred EECCCCCeeccccCcccceecceeEeeCCeEEEEee----CCEEEEEECCCCcE
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHE----KTSVFFVDAKSGGM 135 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~----d~~lyalDa~TG~~ 135 (161)
+|..++.....++........+|+..+++.+|+-+. +.+|+.+|.++|+.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred EECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 998877532333443433445565555567776554 36899999998864
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.82 E-value=2.6 Score=34.51 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGE 51 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~ 51 (161)
-++.+||+..+|.|+.++ +|+
T Consensus 40 pdG~l~V~e~~g~I~~i~--~g~ 60 (352)
T 2ism_A 40 PDGGMLIAERPGRIRLFR--EGR 60 (352)
T ss_dssp TTSCEEEEETTTEEEEEE--TTE
T ss_pred CCCeEEEEeCCCeEEEEE--CCC
Confidence 467799999999999999 564
|
| >3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=7 Score=35.34 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=25.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecC
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMG 59 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~ 59 (161)
+|.+++.+..-.|+++|+ +|+++|++-..
T Consensus 366 dd~~liSsR~~~I~~Id~-tG~V~W~LGg~ 394 (571)
T 3elq_A 366 DDSIILSSRHQGVVKIGR-DKQVKWILAPS 394 (571)
T ss_dssp TTEEEEEETTTEEEEEET-TSCEEEEESCS
T ss_pred CCEEEEECCccEEEEEcC-CCcEEEEECCC
Confidence 568899999999999997 99999998543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=88.40 E-value=5.3 Score=31.27 Aligned_cols=103 Identities=11% Similarity=0.008 Sum_probs=56.6
Q ss_pred CCCEEEEE-ecC-----CeEEEEeCCCCceeEEEecCCC--eec-ceEeeCCCeEEecCCC-----CEEEEEECCCCCee
Q 031361 29 SGDLALVA-TLN-----GTVHLVDTKRGESRWSFSMGKP--IYS-SFTRNDPDFYVDVGED-----WKLYFHRKGIGKMK 94 (161)
Q Consensus 29 ~~~~V~vg-s~D-----G~lyAvd~~tG~~~W~f~t~~~--i~s-sp~~~d~~~~V~~~dd-----g~Lyald~~tG~~~ 94 (161)
.++.+|+- ..+ ..++.+|..++ .|+.-..-| ... +..+.++.+||.++.+ ..++.+|..+.
T Consensus 120 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--- 194 (308)
T 1zgk_A 120 IDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERN--- 194 (308)
T ss_dssp ETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT---
T ss_pred ECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCC---
Confidence 45666654 222 35788888765 477644322 222 2233466777765422 35899998876
Q ss_pred ccccC--ccccee-cceeEeeCCeEE-EEeeC-----CEEEEEECCCCcEEEEe
Q 031361 95 KPSID--VGEFMR-RMPHVWDDGALL-LGHEK-----TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 95 ~w~~~--~~~~V~-ssP~v~~dg~Vy-vGs~d-----~~lyalDa~TG~~~W~~ 139 (161)
.|..- +...-. .+-++.+ +.+| +|..+ ..++.+|+++.+ |+-
T Consensus 195 ~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 245 (308)
T 1zgk_A 195 EWRMITAMNTIRSGAGVCVLH-NCIYAAGGYDGQDQLNSVERYDVETET--WTF 245 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred eEeeCCCCCCccccceEEEEC-CEEEEEeCCCCCCccceEEEEeCCCCc--EEE
Confidence 34321 111111 1223444 6676 56554 579999999874 554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.11 E-value=7.8 Score=30.04 Aligned_cols=106 Identities=9% Similarity=0.083 Sum_probs=58.8
Q ss_pred CCCEEEE-EecC----CeEEEEeCCCCceeEEEecCCC--eec-ceEeeCCCeEEecCCC------CEEEEEECCCCCee
Q 031361 29 SGDLALV-ATLN----GTVHLVDTKRGESRWSFSMGKP--IYS-SFTRNDPDFYVDVGED------WKLYFHRKGIGKMK 94 (161)
Q Consensus 29 ~~~~V~v-gs~D----G~lyAvd~~tG~~~W~f~t~~~--i~s-sp~~~d~~~~V~~~dd------g~Lyald~~tG~~~ 94 (161)
.++.+|+ |..+ ..++.+|..++ .|+.-..-| -.. +..+.++.+||.++.+ ..++.+|..+.+-.
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKD--SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTT--EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCC--eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 4555554 4433 67889999877 577644322 222 2223477777765422 35899999877421
Q ss_pred ccccCcccceec-ceeEeeCCeEE-EEee---------CCEEEEEECCCCcEEEEec
Q 031361 95 KPSIDVGEFMRR-MPHVWDDGALL-LGHE---------KTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 95 ~w~~~~~~~V~s-sP~v~~dg~Vy-vGs~---------d~~lyalDa~TG~~~W~~~ 140 (161)
... .+...... +-++. ++.+| +|.. -..++..|+++.+ |+--
T Consensus 132 ~~~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~ 184 (306)
T 3ii7_A 132 TKP-SMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTEL 184 (306)
T ss_dssp EEC-CCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEE
T ss_pred eCC-CCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEEC
Confidence 111 12222222 22334 46777 4543 4569999999984 5533
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=87.82 E-value=8.4 Score=30.09 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=56.5
Q ss_pred CCCEEEE-EecC-----CeEEEEeCCCCceeEEEecCCC--ee-cceEeeCCCeEEecCCC-----CEEEEEECCCCCee
Q 031361 29 SGDLALV-ATLN-----GTVHLVDTKRGESRWSFSMGKP--IY-SSFTRNDPDFYVDVGED-----WKLYFHRKGIGKMK 94 (161)
Q Consensus 29 ~~~~V~v-gs~D-----G~lyAvd~~tG~~~W~f~t~~~--i~-ssp~~~d~~~~V~~~dd-----g~Lyald~~tG~~~ 94 (161)
.++.+|+ |..+ ..++.+|..+. .|+....-| .. .+..+.++.+||.++.+ ..++.+|..+.
T Consensus 167 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--- 241 (308)
T 1zgk_A 167 LNRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE--- 241 (308)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT---
T ss_pred ECCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC---
Confidence 4555554 3333 45888888765 587643322 11 12233466777765422 36899999876
Q ss_pred cccc--Ccccc-eecceeEeeCCeEE-EEee-----CCEEEEEECCCCcEE
Q 031361 95 KPSI--DVGEF-MRRMPHVWDDGALL-LGHE-----KTSVFFVDAKSGGMI 136 (161)
Q Consensus 95 ~w~~--~~~~~-V~ssP~v~~dg~Vy-vGs~-----d~~lyalDa~TG~~~ 136 (161)
.|.. .+... ...+-++.+ +.+| +|.. -..+++.|+++.+..
T Consensus 242 ~W~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 242 TWTFVAPMKHRRSALGITVHQ-GRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEET-TEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred cEEECCCCCCCccceEEEEEC-CEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 3432 11111 122333454 6666 5654 357899999987643
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=87.72 E-value=9.8 Score=32.33 Aligned_cols=109 Identities=14% Similarity=0.207 Sum_probs=68.7
Q ss_pred EEEEEecCCeEEEEeC-------CCCceeEEEecCCCeecceEeeCC--CeEEecCCCCEEEEEECC-----CCCeeccc
Q 031361 32 LALVATLNGTVHLVDT-------KRGESRWSFSMGKPIYSSFTRNDP--DFYVDVGEDWKLYFHRKG-----IGKMKKPS 97 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~-------~tG~~~W~f~t~~~i~ssp~~~d~--~~~V~~~ddg~Lyald~~-----tG~~~~w~ 97 (161)
.+|+...+|.+.-++. .+++++.+|+.++.+.+. ++.+. .+||.--+ -.++.++++ ++++ ...
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egc-vvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~-v~~ 221 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGM-AADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTV-IDR 221 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEE-EEETTTTEEEEEETT-TEEEEEECSTTSCSCCEE-EEE
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceE-EEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceE-EEE
Confidence 5889999998865333 456888999998866654 34333 46665544 459999965 4555 333
Q ss_pred cCccc---ceecceeEee-C--CeEEEEe-eCCEEEEEECC-CCcEEEEecCCC
Q 031361 98 IDVGE---FMRRMPHVWD-D--GALLLGH-EKTSVFFVDAK-SGGMICSHESDN 143 (161)
Q Consensus 98 ~~~~~---~V~ssP~v~~-d--g~VyvGs-~d~~lyalDa~-TG~~~W~~~~~~ 143 (161)
+..+. -++.--+... + +.+++.| .++++..+|+. +.+.+-+|....
T Consensus 222 ~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 222 ADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred ecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecC
Confidence 33332 2333333322 2 3466666 46689999996 899999996443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=87.43 E-value=11 Score=31.71 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=17.3
Q ss_pred CCEEEEEecCCeEEEEeCCCCcee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESR 53 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~ 53 (161)
++.+|+.+..+.|+.+|..++++.
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~ 172 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVS 172 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEE
T ss_pred CCeEEEEeCCCcEEEEECCCCEEE
Confidence 477787777777888888766543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.09 E-value=9.2 Score=29.92 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=51.2
Q ss_pred eEEEEeCCCCceeEEEecCC--Ceecce-EeeCCCeEEecCC------CCEEEEEECCCCCeeccccC--cccceec-ce
Q 031361 41 TVHLVDTKRGESRWSFSMGK--PIYSSF-TRNDPDFYVDVGE------DWKLYFHRKGIGKMKKPSID--VGEFMRR-MP 108 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~--~i~ssp-~~~d~~~~V~~~d------dg~Lyald~~tG~~~~w~~~--~~~~V~s-sP 108 (161)
.++.+|..+. .|+.-..- +...+. .+.++.+||.++. -..++.+|..+.+ |..- +...-.. +-
T Consensus 128 ~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~ 202 (318)
T 2woz_A 128 SVLCYDPVAA--KWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD---WKDLAPMKTPRSMFGV 202 (318)
T ss_dssp EEEEEETTTT--EEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTE---EEEECCCSSCCBSCEE
T ss_pred eEEEEeCCCC--CEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCE---EEECCCCCCCcccceE
Confidence 5788888776 48765432 233222 2346777776542 1258999998863 4321 1111111 22
Q ss_pred eEeeCCeEE-EEeeC-----CEEEEEECCCCcEEEEe
Q 031361 109 HVWDDGALL-LGHEK-----TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 109 ~v~~dg~Vy-vGs~d-----~~lyalDa~TG~~~W~~ 139 (161)
++.+ +.+| +|..+ ..++..|.++.+ |+-
T Consensus 203 ~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~ 236 (318)
T 2woz_A 203 AIHK-GKIVIAGGVTEDGLSASVEAFDLKTNK--WEV 236 (318)
T ss_dssp EEET-TEEEEEEEEETTEEEEEEEEEETTTCC--EEE
T ss_pred EEEC-CEEEEEcCcCCCCccceEEEEECCCCe--EEE
Confidence 3344 6676 56533 468899999886 554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=12 Score=30.74 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCc
Q 031361 30 GDLALVATLNGTVHLVDTKRGE 51 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~ 51 (161)
++.+||+..+|.|+.+|. +|+
T Consensus 39 dG~l~V~e~~g~I~~~d~-~G~ 59 (354)
T 3a9g_A 39 GGRYLVTERPGRLVLISP-SGK 59 (354)
T ss_dssp TTEEEEEETTTEEEEECS-SCE
T ss_pred CCeEEEEeCCCEEEEEeC-CCc
Confidence 678999999999999984 676
|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.31 E-value=3.5 Score=26.95 Aligned_cols=66 Identities=18% Similarity=0.095 Sum_probs=42.2
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~ 97 (161)
+-.-.-+.||.+|=+|..||+..|.-...-............+......+|+.|.++..|+.- .|.
T Consensus 6 ~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s-~We 71 (75)
T 2jxw_A 6 RWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGES-RWE 71 (75)
T ss_dssp CEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEE-ESS
T ss_pred CcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCE-ecc
Confidence 344445678999999999999999765432111000011223444444578999999999988 554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=86.24 E-value=11 Score=31.86 Aligned_cols=59 Identities=10% Similarity=-0.029 Sum_probs=34.8
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCee--cceEee-CCC-eEEecCCCCEEEEEEC
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIY--SSFTRN-DPD-FYVDVGEDWKLYFHRK 88 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~--ssp~~~-d~~-~~V~~~ddg~Lyald~ 88 (161)
++.+|+++ .++.|+.+|..+|+..+++-...... ...++. +++ +||-......++.++.
T Consensus 239 ~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~ 302 (433)
T 4hw6_A 239 NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY 302 (433)
T ss_dssp TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 68888887 46789999999898856553322211 111221 333 5555444557777653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=15 Score=30.77 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=17.4
Q ss_pred CCCEEEEEe-------------cCCeEEEEeCCC
Q 031361 29 SGDLALVAT-------------LNGTVHLVDTKR 49 (161)
Q Consensus 29 ~~~~V~vgs-------------~DG~lyAvd~~t 49 (161)
.++++|+++ .+|.||.+|.++
T Consensus 59 ~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~ 92 (355)
T 3sre_A 59 PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNE 92 (355)
T ss_dssp TTSEEEEEECCC-----------CCEEEEEETTS
T ss_pred CCCeEEEEeccccCCCcccCCCCCCeEEEEecCC
Confidence 468999998 799999999873
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.68 E-value=13 Score=29.62 Aligned_cols=59 Identities=10% Similarity=0.181 Sum_probs=38.2
Q ss_pred CCCEEEE-EecCCeEEEEeCCCCceeEEEecCCC--eecceEe-eCCCeEEecCCCCEEEEEECC
Q 031361 29 SGDLALV-ATLNGTVHLVDTKRGESRWSFSMGKP--IYSSFTR-NDPDFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 29 ~~~~V~v-gs~DG~lyAvd~~tG~~~W~f~t~~~--i~ssp~~-~d~~~~V~~~ddg~Lyald~~ 89 (161)
.++++|+ ...++.|+.+|.. |+++.+++.++- ..+ .+. .++.++|-...+..||.++..
T Consensus 37 ~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EG-Ia~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 37 QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLET-IEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEE-EEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHH-eEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3577775 8889999999997 999999876542 111 122 233444544445578877654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.35 E-value=9 Score=30.39 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=49.4
Q ss_pred CeEEEEeCCCCceeEEEecCCC----eecc-eEeeCCCeEEecCCC----------------------CEEEEEECCCCC
Q 031361 40 GTVHLVDTKRGESRWSFSMGKP----IYSS-FTRNDPDFYVDVGED----------------------WKLYFHRKGIGK 92 (161)
Q Consensus 40 G~lyAvd~~tG~~~W~f~t~~~----i~ss-p~~~d~~~~V~~~dd----------------------g~Lyald~~tG~ 92 (161)
..++++|.....-.|+.-..-+ ...+ ..+.++.+||.++.+ ..++.+|..+.
T Consensus 217 ~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~- 295 (357)
T 2uvk_A 217 DAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG- 295 (357)
T ss_dssp CCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred CceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-
Confidence 4577787645556788754322 1222 334477777765411 24677888765
Q ss_pred eeccccC--ccccee-cceeEeeCCeEE-EEeeC------CEEEEEECCCCcEEEEe
Q 031361 93 MKKPSID--VGEFMR-RMPHVWDDGALL-LGHEK------TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 93 ~~~w~~~--~~~~V~-ssP~v~~dg~Vy-vGs~d------~~lyalDa~TG~~~W~~ 139 (161)
.|..- +...-. .+-++.+ +.+| +|..+ ..++.++.+++|++-.-
T Consensus 296 --~W~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 296 --KWDKSGELSQGRAYGVSLPWN-NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ---CEEEEECSSCCBSSEEEEET-TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred --ceeeCCCCCCCcccceeEEeC-CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 34321 111111 2223444 6565 67754 36899999999887554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=84.30 E-value=14 Score=32.59 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=52.0
Q ss_pred eEEEEeCCCCceeEEEe----cCCCeecc-eE-eeCCCeEEecC-CCCEEEEEECCCCCeeccccC--cccc-eecceeE
Q 031361 41 TVHLVDTKRGESRWSFS----MGKPIYSS-FT-RNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSID--VGEF-MRRMPHV 110 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~----t~~~i~ss-p~-~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~--~~~~-V~ssP~v 110 (161)
.++.+|..+++ |+-- +......+ .. ..++.+||-++ ++..++.+|+.++ .|..- +... ...+-++
T Consensus 220 ~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~---~W~~~~~~~~~R~~~s~~~ 294 (656)
T 1k3i_A 220 LTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD---SWIPGPDMQVARGYQSSAT 294 (656)
T ss_dssp EEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT---EEEECCCCSSCCSSCEEEE
T ss_pred EEEEEeCCCCc--EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC---ceeECCCCCccccccceEE
Confidence 57888888875 5432 11112221 12 24677887655 4568999999876 34321 1111 1112234
Q ss_pred eeCCeEE-EEe-eC-----CEEEEEECCCCcEEEEe
Q 031361 111 WDDGALL-LGH-EK-----TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 111 ~~dg~Vy-vGs-~d-----~~lyalDa~TG~~~W~~ 139 (161)
..|+.|| +|. .+ ..++..|+++++ |+.
T Consensus 295 ~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~ 328 (656)
T 1k3i_A 295 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTS 328 (656)
T ss_dssp CTTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEE
T ss_pred ecCCeEEEEeCcccCCcccccceEeCCCCCc--cee
Confidence 4246677 566 34 579999999986 665
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=83.56 E-value=16 Score=29.59 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=54.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEe---c-CCCeecceEee---CCCeEEecCCC---CEEEEEECCCCCeeccccC
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFS---M-GKPIYSSFTRN---DPDFYVDVGED---WKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~---t-~~~i~ssp~~~---d~~~~V~~~dd---g~Lyald~~tG~~~~w~~~ 99 (161)
++.+|+|+..| ++-++...|...|+.. . +..+. +..+. ++.+|++...+ ..||.. ...|+- |-++.
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~-~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~t-W~~~~ 97 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIH-HIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGN-WTEAT 97 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEE-EEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSC-CEECS
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceE-EEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCC-ceECC
Confidence 67999999888 6666665555689853 1 22232 22332 34678776433 146644 233433 33332
Q ss_pred ccccee------------c--ceeEe--e-CCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 100 VGEFMR------------R--MPHVW--D-DGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 100 ~~~~V~------------s--sP~v~--~-dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
...... . +=++. + ++.+|+|...+.||.-+ +|..-|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~--DgG~tW~~ 152 (394)
T 3b7f_A 98 RPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST--DHGASWEP 152 (394)
T ss_dssp BCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES--STTSBCEE
T ss_pred ccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc--CCCCCeEE
Confidence 210000 0 01112 1 47799998888888775 33344553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=83.54 E-value=16 Score=30.94 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=31.7
Q ss_pred ccccCcccceecceeEee--CCeEEEEeeCCEEEEEECC-----CCcEEEEecC
Q 031361 95 KPSIDVGEFMRRMPHVWD--DGALLLGHEKTSVFFVDAK-----SGGMICSHES 141 (161)
Q Consensus 95 ~w~~~~~~~V~ssP~v~~--dg~VyvGs~d~~lyalDa~-----TG~~~W~~~~ 141 (161)
...|+++..++. ++.| .+.+|+|-++..+..+|++ +++++..+..
T Consensus 173 VR~f~lgsq~Eg--cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~ 224 (355)
T 3amr_A 173 VRAFKMNSQTEG--MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG 224 (355)
T ss_dssp EEEEECSSCEEE--EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS
T ss_pred EEEecCCCCcce--EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC
Confidence 344555544442 2343 3789999999999999976 6888888753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=81.79 E-value=14 Score=32.47 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=67.6
Q ss_pred CCCCEEEEEe-cCCeEEEEeCCCC----ceeEEE-------ecCCC-eecceEeeCCCeEEecCCC------CEEEEEEC
Q 031361 28 ESGDLALVAT-LNGTVHLVDTKRG----ESRWSF-------SMGKP-IYSSFTRNDPDFYVDVGED------WKLYFHRK 88 (161)
Q Consensus 28 ~~~~~V~vgs-~DG~lyAvd~~tG----~~~W~f-------~t~~~-i~ssp~~~d~~~~V~~~dd------g~Lyald~ 88 (161)
.....+|++. .+++||.+|.++- ++.=+. +++.. -+......|+ +||-+..+ |.+..+|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 4466777755 4578999998755 333333 12211 0111112355 77755433 68999999
Q ss_pred CCCCeeccccCcccceeccee-E--eeCCeEEEEee--------------------CCEEEEEECCCCcEEEEecCC
Q 031361 89 GIGKMKKPSIDVGEFMRRMPH-V--WDDGALLLGHE--------------------KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 89 ~tG~~~~w~~~~~~~V~ssP~-v--~~dg~VyvGs~--------------------d~~lyalDa~TG~~~W~~~~~ 142 (161)
+|+++ .-+++.++--..-++ + .-++.+++-|. ..+++.+|..+++++.++..+
T Consensus 172 ~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 172 YSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp TTCCE-EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred CCCeE-EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 99987 444544422222221 1 21233555553 789999999999999998876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 161 | |||
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.76 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.75 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 99.75 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 99.69 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.68 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 99.6 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 99.58 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.46 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.4 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.39 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.35 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.31 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.29 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.24 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.09 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.05 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.03 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.02 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.94 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.91 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.86 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 97.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.83 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.82 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.75 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.71 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.7 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.69 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.64 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.6 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.53 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.51 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.5 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.48 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.4 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.38 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.24 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.18 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.04 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 96.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 96.84 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.8 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.45 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.44 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 96.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.35 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.34 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.31 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.27 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.27 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.11 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 95.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 95.83 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.44 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.39 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.53 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 94.4 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.23 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 93.98 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 93.93 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 93.52 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 92.78 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 92.4 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 91.79 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 91.24 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 90.39 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 90.13 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 87.06 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 85.21 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 84.97 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 83.63 |
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=99.76 E-value=3.2e-18 Score=151.09 Aligned_cols=121 Identities=20% Similarity=0.255 Sum_probs=95.9
Q ss_pred CCCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-----------eecceEeeCCCeEEecCCCCEEEEEECCC
Q 031361 23 PRASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-----------IYSSFTRNDPDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 23 ~~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-----------i~ssp~~~d~~~~V~~~ddg~Lyald~~t 90 (161)
.+.+| +.+|+||+++.+|.|||+|++||+++|+|+...+ +...+.+.++.+|+... +++|||+|+.|
T Consensus 69 ~~stPiv~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-~g~l~alda~t 147 (573)
T d1kb0a2 69 VEATPVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-DGRLIALDAAT 147 (573)
T ss_dssp CCCCCEEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-TSEEEEEETTT
T ss_pred cEECCEEECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-ccceeeecccc
Confidence 36677 6899999999999999999999999999976532 12233444666777764 56999999999
Q ss_pred CCeeccccCccc------ceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCCCCCC
Q 031361 91 GKMKKPSIDVGE------FMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 91 G~~~~w~~~~~~------~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
|++ .|+..+.+ .+.++|++.+ +.||+|+. .+.++|+|++||+++|+|.+.....
T Consensus 148 G~~-~W~~~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~ 213 (573)
T d1kb0a2 148 GKE-VWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP 213 (573)
T ss_dssp CCE-EEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred ccc-eecccCccCCcceEEeecceEEEe-ccEEEeeccccccccceEEEEecCCccceeeeeeccccC
Confidence 999 88776532 3567899886 88999875 4689999999999999998765443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=99.75 E-value=6e-18 Score=149.14 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=94.8
Q ss_pred CCCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe-----------ecceEeeCCCeEEecCCCCEEEEEECCC
Q 031361 23 PRASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI-----------YSSFTRNDPDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 23 ~~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i-----------~ssp~~~d~~~~V~~~ddg~Lyald~~t 90 (161)
.+.+| +.+|+||++|.+|.|||||++||+++|+|+...+- ...+...++.+|+.. .+++|||+|++|
T Consensus 58 ~~stPiv~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~l~Alda~t 136 (560)
T d1kv9a2 58 LEATPLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-LDGRLIALDAKT 136 (560)
T ss_dssp CCCCCEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-TTSEEEEEETTT
T ss_pred cEeCCEEECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEe-CCCEEEEEECCC
Confidence 35677 68999999999999999999999999999754321 111222234455555 566999999999
Q ss_pred CCeeccccCccc-----ceecceeEeeCCeEEEEeeC------CEEEEEECCCCcEEEEecCCCCCC
Q 031361 91 GKMKKPSIDVGE-----FMRRMPHVWDDGALLLGHEK------TSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 91 G~~~~w~~~~~~-----~V~ssP~v~~dg~VyvGs~d------~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
|++ .|.+...+ .+.++|.+.+ +.|++|+.. +.++|+|++||+++|+|.+.....
T Consensus 137 G~~-~w~~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~ 201 (560)
T d1kv9a2 137 GKA-IWSQQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP 201 (560)
T ss_dssp CCE-EEEEECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred CcE-EeccCccCcccceeeeeeeeeec-CcccccccceeccccceEEEEECCCceEEeeeeeccccc
Confidence 999 99887654 4678999986 889998753 689999999999999999865443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.75 E-value=7.4e-18 Score=149.17 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=95.7
Q ss_pred CCCCC-CCCCEEEEEec-CCeEEEEeCC-CCceeEEEecCCCeec-----------ceEeeCCCeEEecCCCCEEEEEEC
Q 031361 23 PRASP-ESGDLALVATL-NGTVHLVDTK-RGESRWSFSMGKPIYS-----------SFTRNDPDFYVDVGEDWKLYFHRK 88 (161)
Q Consensus 23 ~~~s~-~~~~~V~vgs~-DG~lyAvd~~-tG~~~W~f~t~~~i~s-----------sp~~~d~~~~V~~~ddg~Lyald~ 88 (161)
.+.+| +.+|+||+++. +|+|||+|++ ||+++|+|+...+... .+++.++.+|+.+. +|+|||+|+
T Consensus 54 ~~~tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~-~g~l~alda 132 (571)
T d2ad6a1 54 HEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-NGHLLALDA 132 (571)
T ss_dssp CCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TSEEEEEET
T ss_pred cccCCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC-CCcEEeeeh
Confidence 45667 68999999996 7999999985 7999999987654332 12344566777764 569999999
Q ss_pred CCCCeeccccCcc-----cceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCCC
Q 031361 89 GIGKMKKPSIDVG-----EFMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 89 ~tG~~~~w~~~~~-----~~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+||++ .|.+.+. ..+.++|++.+ +.||+|.. ++.++|+|++||+++|++.+..
T Consensus 133 ~tG~~-~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~ 196 (571)
T d2ad6a1 133 KTGKI-NWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATG 196 (571)
T ss_dssp TTCCE-EEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred hhhhh-hccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccC
Confidence 99999 8877654 46889999997 88999985 7899999999999999998754
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=99.69 E-value=1.3e-16 Score=141.91 Aligned_cols=118 Identities=11% Similarity=0.095 Sum_probs=91.3
Q ss_pred CCCCC-CCCCEEEEEec-CCeEEEEeC-CCCceeEEEecCCCeecc-----------eEeeCCC------eEEecCCCCE
Q 031361 23 PRASP-ESGDLALVATL-NGTVHLVDT-KRGESRWSFSMGKPIYSS-----------FTRNDPD------FYVDVGEDWK 82 (161)
Q Consensus 23 ~~~s~-~~~~~V~vgs~-DG~lyAvd~-~tG~~~W~f~t~~~i~ss-----------p~~~d~~------~~V~~~ddg~ 82 (161)
.|.+| +++|++|+.+. +++++|+|+ +||+++|+|+...+.... .++.+++ +|+.. .|++
T Consensus 54 ~~~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t-~dg~ 132 (596)
T d1w6sa_ 54 HEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ-LDGN 132 (596)
T ss_dssp CCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC-TTSE
T ss_pred ceeCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEe-CCCC
Confidence 35667 68999999875 699999997 699999999865432211 1122221 44444 4679
Q ss_pred EEEEECCCCCeeccccCcc-----cceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCCC
Q 031361 83 LYFHRKGIGKMKKPSIDVG-----EFMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 83 Lyald~~tG~~~~w~~~~~-----~~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|||||++||++ .|.+... ..+.++|++.+ +.||+|+. .|.++|+|++||+++|+|.+..
T Consensus 133 l~Alda~tG~~-~w~~~~~d~~~~~~~t~~P~v~~-~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~ 202 (596)
T d1w6sa_ 133 VAALNAETGET-VWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (596)
T ss_dssp EEEEETTTCCE-EEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred eEeeccccCce-eccccccccccccccccCCcEEC-CeEEEeeccccccccCceEEEECCCCcEEEEeeccC
Confidence 99999999999 8888654 46899999997 88999975 4899999999999999998754
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.68 E-value=2.4e-16 Score=139.25 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=91.0
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe---------ecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI---------YSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i---------~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
+.+| +.+|+||++|.+|+|||||++||+++|+|+...+. ...+.+.++.+|++.. +++|||+|++||++
T Consensus 61 ~stPiv~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~-~~~l~alda~tG~~ 139 (582)
T d1flga_ 61 ESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-DASVVALNKNTGKV 139 (582)
T ss_dssp CCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-TTEEEEEESSSCCE
T ss_pred ccCCEEECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecC-CCeEEEecccccce
Confidence 4566 68999999999999999999999999999765331 1233444666777765 55999999999999
Q ss_pred eccccCccc-----ceecceeEeeCC----eEEE-E------eeCCEEEEEECCCCcEEEEecCCC
Q 031361 94 KKPSIDVGE-----FMRRMPHVWDDG----ALLL-G------HEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 94 ~~w~~~~~~-----~V~ssP~v~~dg----~Vyv-G------s~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+|+..+.+ ...++|.+.+++ .+++ | +..+.++|+|++||+++|++.+..
T Consensus 140 -~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 204 (582)
T d1flga_ 140 -VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVE 204 (582)
T ss_dssp -EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESST
T ss_pred -eeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccC
Confidence 88776543 467888887653 2343 3 235789999999999999997754
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=99.60 E-value=5.3e-15 Score=131.47 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=91.3
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-----CeecceEeeCCCeEEecC-----CCCEEEEEECCCCCeeccccC
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDPDFYVDVG-----EDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----~i~ssp~~~d~~~~V~~~-----ddg~Lyald~~tG~~~~w~~~ 99 (161)
..+||+++.||+|||||++||+++|+|..+. .+.++|.+.++.+||+.. -.|.++|+|+.||++ .|++.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~-~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ-VWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE-EEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcE-EEEee
Confidence 3479999999999999999999999998653 477888999999999764 247999999999999 88765
Q ss_pred cc--------------------------------------cceecceeEee-CCeEEEEeeC----------------CE
Q 031361 100 VG--------------------------------------EFMRRMPHVWD-DGALLLGHEK----------------TS 124 (161)
Q Consensus 100 ~~--------------------------------------~~V~ssP~v~~-dg~VyvGs~d----------------~~ 124 (161)
+. ..+.+++.+.. .+.+|++..+ .+
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s 279 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence 32 22455666532 2779998654 46
Q ss_pred EEEEECCCCcEEEEecCCCC
Q 031361 125 VFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 125 lyalDa~TG~~~W~~~~~~~ 144 (161)
+.|||++|||++|.|+...+
T Consensus 280 ivAlD~~TG~~~W~~Q~~~~ 299 (596)
T d1w6sa_ 280 IFGRDADTGEAKFGYQKTPH 299 (596)
T ss_dssp EEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccccccccceec
Confidence 99999999999999987554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.58 E-value=1.2e-14 Score=128.34 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=93.8
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecC-----CCeecceEeeCCCeEEecC-----CCCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMG-----KPIYSSFTRNDPDFYVDVG-----EDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-----~~i~ssp~~~d~~~~V~~~-----ddg~Lyald~~tG~~~~w~ 97 (161)
..++.||+++.||+|||+|++||+++|+++.. ..+.++|.+.++.+||+.. -.|.++|+|+.||++ .|+
T Consensus 113 ~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~-~W~ 191 (571)
T d2ad6a1 113 YGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL-KWR 191 (571)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE-EEE
T ss_pred eeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcE-EEE
Confidence 46899999999999999999999999999764 3577888888998998765 256899999999999 886
Q ss_pred cCcc--------------------------------------cceecceeEeeC-CeEEEEee----------------C
Q 031361 98 IDVG--------------------------------------EFMRRMPHVWDD-GALLLGHE----------------K 122 (161)
Q Consensus 98 ~~~~--------------------------------------~~V~ssP~v~~d-g~VyvGs~----------------d 122 (161)
+.+. ..+.++|.+..+ +.+|++.. .
T Consensus 192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s 271 (571)
T d2ad6a1 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccc
Confidence 5432 224456666433 67888877 4
Q ss_pred CEEEEEECCCCcEEEEecCCCC
Q 031361 123 TSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 123 ~~lyalDa~TG~~~W~~~~~~~ 144 (161)
.+++|||++||+++|.|+...+
T Consensus 272 ~svvAld~~TG~~~W~~q~~~~ 293 (571)
T d2ad6a1 272 MTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTT
T ss_pred cceeeeeccchhheecccccCc
Confidence 6899999999999999997544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=99.46 E-value=2.2e-13 Score=119.81 Aligned_cols=65 Identities=9% Similarity=-0.016 Sum_probs=58.6
Q ss_pred CEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 81 WKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 81 g~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
|.|+|+|+.||++ +|+++......++|+....+.||+|+.|+.|||+|++|||++|+|++.....
T Consensus 457 G~l~AiD~~tGk~-~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~ 521 (573)
T d1kb0a2 457 GRLLAWDPVAQKA-AWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV 521 (573)
T ss_dssp EEEEEEETTTTEE-EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred ccEEEeCCCCCce-EeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc
Confidence 5799999999999 9999999888888888776899999999999999999999999999875433
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=99.40 E-value=7.2e-13 Score=116.23 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=77.0
Q ss_pred CceeEEEecCCC--eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-----------cceecceeEeeCCeE
Q 031361 50 GESRWSFSMGKP--IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-----------EFMRRMPHVWDDGAL 116 (161)
Q Consensus 50 G~~~W~f~t~~~--i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-----------~~V~ssP~v~~dg~V 116 (161)
=++.|+|+++.. +.++|.+.++.+||...+ +.|||||++||++ +|+++.+ ..+...+...+ +.|
T Consensus 44 L~~aW~~~~~~~~~~~stPiv~~g~vyv~t~~-~~v~AlDa~tG~~-lW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 120 (560)
T d1kv9a2 44 LGLAWYMDLDNTRGLEATPLFHDGVIYTSMSW-SRVIAVDAASGKE-LWRYDPEVAKVKARTSCCDAVNRGVALWG-DKV 120 (560)
T ss_dssp EEEEEEEECSCCSCCCCCCEEETTEEEEEEGG-GEEEEEETTTCCE-EEEECCCCCGGGGGGCTTCSCCCCCEEEB-TEE
T ss_pred ceEEEEEECCCCCCcEeCCEEECCEEEEECCC-CeEEEEeCCCCCE-EEEECCCCCccccccccccccccCcceeC-CeE
Confidence 368899999764 679999999999998754 5999999999999 9987543 12344556665 789
Q ss_pred EEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 117 LLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 117 yvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
|+++.++.|||||++||+++|++...+...
T Consensus 121 ~~~~~~g~l~Alda~tG~~~w~~~~~~~~~ 150 (560)
T d1kv9a2 121 YVGTLDGRLIALDAKTGKAIWSQQTTDPAK 150 (560)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSCTTS
T ss_pred EEEeCCCEEEEEECCCCcEEeccCccCccc
Confidence 999999999999999999999998765443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.39 E-value=1.1e-12 Score=115.46 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCceeEEEecCCC----eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc---------ceecceeEeeCCe
Q 031361 49 RGESRWSFSMGKP----IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE---------FMRRMPHVWDDGA 115 (161)
Q Consensus 49 tG~~~W~f~t~~~----i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~---------~V~ssP~v~~dg~ 115 (161)
+=++.|+|+++.. ..++|.+.|+.+|+...+ ++|||||++||++ +|+++.+. .+...|++.+ ++
T Consensus 43 ~L~~aW~~~~g~~~~~~~~stPiv~~g~vy~~t~~-~~v~AlDa~TG~~-lW~~~~~~~~~~~~~~~~~~rg~a~~~-~~ 119 (582)
T d1flga_ 43 KLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASY-SRLFALDAKTGKR-LWTYNHRLPDDIRPCCDVVNRGAAIYG-DK 119 (582)
T ss_dssp GCEEEEEEECCTTCCSCCCCCCEEETTEEEEEETT-TEEEEEESSSCCE-EEEEECCCCTTCCCSSCSCCCCCEEET-TE
T ss_pred hceEEEEEeCCCCCCCCcccCCEEECCEEEEeCCC-CeEEEEeCCCCCe-EEEEcCCCCCccccccccccCCceEeC-Cc
Confidence 4567899998643 458899999999988754 5999999999999 99986542 3444566775 88
Q ss_pred EEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 116 LLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 116 VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+|+|+.++.+||||++||+++|+....+.
T Consensus 120 i~~~t~~~~l~alda~tG~~~W~~~~~~~ 148 (582)
T d1flga_ 120 VFFGTLDASVVALNKNTGKVVWKKKFADH 148 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECSCG
T ss_pred eEEecCCCeEEEecccccceeeeecccCC
Confidence 99999999999999999999999887654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.35 E-value=6.7e-06 Score=61.75 Aligned_cols=114 Identities=15% Similarity=0.059 Sum_probs=79.8
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCC--eecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKP--IYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~--i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
+.+++++.|++|+.+|.++++.+.+++.... -..+..+. |+. +||-+..++.++.+|..||++ .+..........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence 5689999999999999999999999976432 22333443 554 566666677999999999999 666655433221
Q ss_pred --ce---eEee-CCeEEEEe------------eCCEEEEEECCCCcEEEEecCCCCC
Q 031361 107 --MP---HVWD-DGALLLGH------------EKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 107 --sP---~v~~-dg~VyvGs------------~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
.| .+.. ...+|+++ .+..++..|..+++.++.+......
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 137 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI 137 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCc
Confidence 11 1222 24466554 4678999999999999998866543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=9.9e-06 Score=62.89 Aligned_cols=114 Identities=10% Similarity=-0.013 Sum_probs=82.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+..+++++.||.++..|.++|+.+.+++...+|.+-....+++.++-+..++.++.+|..+++.. ....-...|.+-=
T Consensus 194 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLK 272 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEE
T ss_pred cccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEE
Confidence 567899999999999999999999999998888765322234555555556779999999988773 2222223333321
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
...++..++.|+.|+.++.-|..+|+.+.++....
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 307 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS 307 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCC
Confidence 11232457789999999999999999999877543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2e-05 Score=58.44 Aligned_cols=112 Identities=12% Similarity=0.169 Sum_probs=81.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc-eecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF-MRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~-V~ss 107 (161)
.+..++.|+.||.|+..|..+++++.++............ +++.++-+..|+.++..|..+++. ...+..... ....
T Consensus 186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 263 (342)
T d2ovrb2 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-KDNILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAV 263 (342)
T ss_dssp CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCE
T ss_pred CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec-CCCEEEEEcCCCEEEEEecccccc-cccccccceeeece
Confidence 5778999999999999999999999998876655544333 345555555777999999988877 443433221 1111
Q ss_pred eeE-eeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 108 PHV-WDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 108 P~v-~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
-.+ .+...++.|+.|++++.-|.+||+.+.++...
T Consensus 264 ~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~ 299 (342)
T d2ovrb2 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299 (342)
T ss_dssp EEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred eecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecc
Confidence 112 23356788999999999999999999988643
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=1.7e-05 Score=59.13 Aligned_cols=108 Identities=12% Similarity=0.172 Sum_probs=79.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
..+..++.++.||.|+..|..+|+.++.++.......+... +++.++-+..||.++..|..+++. ........ +.+.
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~-~~~~ 287 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL-SDKFLVSAAADGSIRGWDANDYSR-KFSYHHTN-LSAI 287 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEE-CSSEEEEECTTSEEEEEETTTCCE-EEEEECTT-CCCC
T ss_pred ccceeeecccccceEEeeecccccccccccccccccccccc-ccceeeeeecccccccccccccce-ecccccCC-ceEE
Confidence 36788999999999999999999999999865443333333 455666666788999999999877 55444333 3332
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
-+...++.+++++.|+.++.-|.+||+++..
T Consensus 288 ~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~ 318 (355)
T d1nexb2 288 TTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318 (355)
T ss_dssp CEEEECSSEEEEEETTEEEEEETTTCCBCCS
T ss_pred EEEcCCCCEEEEEeCCEEEEEECCCCCEEEE
Confidence 2334456677777899999999999998754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.09 E-value=3.1e-05 Score=57.30 Aligned_cols=112 Identities=11% Similarity=0.177 Sum_probs=78.2
Q ss_pred EEEEE-ecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECCCCCeeccccCcccceeccee
Q 031361 32 LALVA-TLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 32 ~V~vg-s~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
.+||. +.||+|.-+|.+||+++.+++++....+-....|+. +||....++.++.+|..+++. ...+..+......-.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~~~~~~~~ 81 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGSSPQGVAV 81 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeecccccccccc
Confidence 46775 688999999999999999999986544322222554 567766777999999999988 555555443332222
Q ss_pred EeeCCeEEE-EeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 110 VWDDGALLL-GHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 110 v~~dg~Vyv-Gs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
..++..+++ ++.+..++..|..+|+..+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS 117 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred ccccccccccccccceeeecccccceeeeecccccc
Confidence 222233554 55677899999999999998876543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=7.6e-05 Score=55.63 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=80.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcc---c
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG---E 102 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~---~ 102 (161)
.....++.|+.||.++..|.++++++.++... ++|.+ ... .++..++-+..|+.++..|..+++. ...+... .
T Consensus 194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~-v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~ 271 (340)
T d1tbga_ 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIIC 271 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCS
T ss_pred cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEE-EEECCCCCEEEEEeCCCeEEEEeeccccc-ccccccccccC
Confidence 36778889999999999999999999999753 34443 222 2556666666788999999888766 3322222 2
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.|.+-.+..+...++.|+.|+.++..|..+|+.+.++..
T Consensus 272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 310 (340)
T d1tbga_ 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence 233322222334578899999999999999999999875
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.03 E-value=6.8e-05 Score=58.34 Aligned_cols=111 Identities=9% Similarity=-0.015 Sum_probs=78.0
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-------
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE------- 102 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~------- 102 (161)
..+..|+.||.|+..|.++++....++.. .+|.+-....++..++-+..|+.++..|..++.. ...++...
T Consensus 160 ~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~h~ 238 (311)
T d1nr0a1 160 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHS 238 (311)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSS
T ss_pred eeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccc-ccccccccccccccc
Confidence 35667999999999999999999998764 3444322223556666666777999999988876 44443221
Q ss_pred -ceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 103 -FMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 -~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.|.+ -.+. ++..++.|+.|+.++.-|..||+++.++....
T Consensus 239 ~~V~~-~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~ 280 (311)
T d1nr0a1 239 GSVFG-LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280 (311)
T ss_dssp SCEEE-EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred ccccc-cccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC
Confidence 1222 1122 23557889999999999999999998887643
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.02 E-value=7.8e-05 Score=57.43 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=71.0
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCC--------CeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGK--------PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--------~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~ 98 (161)
+..+..++.|+.||.|+..|..+|+..+++.... +|.+-....++..++-+..|+.++.+|..++.. ....
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~ 292 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-KSDS 292 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc-cccc
Confidence 3466788899999999999999999999987543 232211112556666666777999888877765 2222
Q ss_pred Ccc-------------cceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 99 DVG-------------EFMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 99 ~~~-------------~~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
... ..|.+ -... ++..++.|+.|+.++..|..+|+++.+++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~ 348 (388)
T d1erja_ 293 KTPNSGTCEVTYIGHKDFVLS-VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348 (388)
T ss_dssp ------CEEEEEECCSSCEEE-EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccceeeecccccceEEE-EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC
Confidence 111 11111 1111 335678899999999999999999999875
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.97 E-value=0.0002 Score=53.12 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=82.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+..++.+..|+.++..|..+++.+..+.....-..+.... ++..++.+..|+.++.+|..+|.. ...++.......+
T Consensus 170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~ 248 (355)
T d1nexb2 170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGL 248 (355)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCCCE
T ss_pred ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccc-ccccccccccccc
Confidence 46889999999999999999999999887544333233332 445555555777999999999988 6666554433333
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
-... +..++.|+.|+.++.-|..+++....+...
T Consensus 249 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 282 (355)
T d1nexb2 249 LRLS-DKFLVSAAADGSIRGWDANDYSRKFSYHHT 282 (355)
T ss_dssp EEEC-SSEEEEECTTSEEEEEETTTCCEEEEEECT
T ss_pred cccc-cceeeeeecccccccccccccceecccccC
Confidence 3333 477889999999999999999988776543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.94 E-value=0.00014 Score=52.91 Aligned_cols=112 Identities=11% Similarity=0.075 Sum_probs=76.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee---------------------CCCeEEecCCCCEEEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---------------------DPDFYVDVGEDWKLYFHR 87 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~---------------------d~~~~V~~~ddg~Lyald 87 (161)
.+..++.++.||.++..|..+++.+.++............. ++..++-+..|+.++..|
T Consensus 154 ~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 233 (317)
T d1vyhc1 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233 (317)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEE
Confidence 56788899999999999999999999886533221111111 113344445677899999
Q ss_pred CCCCCeeccccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 88 KGIGKMKKPSIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 88 ~~tG~~~~w~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
..+|+. ...+... ..|.+.-...++..++.|+.|+.++..|..+|+++.++..
T Consensus 234 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 287 (317)
T d1vyhc1 234 VSTGMC-LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287 (317)
T ss_dssp TTTTEE-EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred CCCCcE-EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Confidence 999887 4444332 2333322222334577899999999999999999998875
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.91 E-value=4e-05 Score=57.52 Aligned_cols=112 Identities=10% Similarity=-0.059 Sum_probs=74.6
Q ss_pred EecCCeEEEEeCCCCceeEEEecCC--CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeC
Q 031361 36 ATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDD 113 (161)
Q Consensus 36 gs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~d 113 (161)
++.++.++.+|..+|+.......+. .+.......++..++... ++.++.+|..+|+. ...+..+..+.+--+..|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~-~~~~~~~~~~~~va~s~DG 303 (346)
T d1jmxb_ 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKL-IKAANLDHTYYCVAFDKKG 303 (346)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEE-EEEEECSSCCCEEEECSSS
T ss_pred ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcE-EEEEcCCCCEEEEEEcCCC
Confidence 3456678888998888887765433 233222222333333333 34899999999998 6666666554432222333
Q ss_pred CeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcC
Q 031361 114 GALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLG 149 (161)
Q Consensus 114 g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~ 149 (161)
..+|+|+.|+.++..|++|++.+.+.+...-.....
T Consensus 304 ~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~~~~~ 339 (346)
T d1jmxb_ 304 DKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTT 339 (346)
T ss_dssp SCEEEESBSSEEEEEETTTTEEEEEEECSSSCCBTC
T ss_pred CEEEEEeCCCcEEEEECccCCEEEEEECCCCCccee
Confidence 579999999999999999999999998765544433
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.86 E-value=0.00022 Score=51.78 Aligned_cols=115 Identities=5% Similarity=0.032 Sum_probs=77.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+..++.|+.||+|+.-|..+|+++.+++.. .+|.+-....++..++.+..++.+...+....+...........+...
T Consensus 28 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (317)
T d1vyhc1 28 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 107 (317)
T ss_dssp SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceee
Confidence 5678999999999999999999999999753 344432222244555555555566666766666522222222333333
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
....++..++.++.|+.+...|..+|+....+....
T Consensus 108 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 143 (317)
T d1vyhc1 108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 143 (317)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred eccCCCceEEeeccCcceeEeecccceeeeEEccCC
Confidence 333334567889999999999999999998886543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=0.00013 Score=57.83 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=74.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc------eEe-eCCCeEEecCCCC---EEEEEECCCCCeeccccC
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS------FTR-NDPDFYVDVGEDW---KLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss------p~~-~d~~~~V~~~ddg---~Lyald~~tG~~~~w~~~ 99 (161)
++.+..|+.||+|+-.|..+|+++.+++....+..+ ..+ .|+..++-+++|+ .+...|..+|+. ...+.
T Consensus 195 dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~-~~~l~ 273 (393)
T d1sq9a_ 195 RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLS 273 (393)
T ss_dssp TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEEC
T ss_pred CCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccccee-eeeec
Confidence 568889999999999999999999999865443221 112 2556655554443 466679999987 55443
Q ss_pred ccc--------------ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 100 VGE--------------FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 100 ~~~--------------~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
... .|.+-=+..+...++.|+.|+++..=|.++|+.+.+++.
T Consensus 274 ~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g 329 (393)
T d1sq9a_ 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM 329 (393)
T ss_dssp BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred cccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECC
Confidence 221 122211111334577899999999999999999999864
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=97.83 E-value=0.00021 Score=52.57 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=79.2
Q ss_pred CCCEEEEEecC-CeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecC--CCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLN-GTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVG--EDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~D-G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~--ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+..+++++.+ +.++..+...++....+..+....+.....++ ..|+.+. .++.++.+|..++++ ...+..+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~-~~~~~~~~~~ 246 (301)
T d1l0qa2 168 DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPVGPDP 246 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-EEEEECCSSE
T ss_pred cccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE-EEEEcCCCCE
Confidence 45667777665 67778888888888888776654443222344 3555543 346899999999988 6666665544
Q ss_pred ecceeEeeCC-eEEE-EeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 105 RRMPHVWDDG-ALLL-GHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 105 ~ssP~v~~dg-~Vyv-Gs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
.. -+++.|| .+|+ ++.+++++.+|.+||+++-++..+..+
T Consensus 247 ~~-va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~P 288 (301)
T d1l0qa2 247 AG-IAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288 (301)
T ss_dssp EE-EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred EE-EEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCCCC
Confidence 32 3345455 4776 557899999999999999999875543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.83 E-value=0.00018 Score=53.83 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=71.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe-ecceEe-eCCC-eEEecCCCCEEEEEECCCCCeeccccCcccc-
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI-YSSFTR-NDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF- 103 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i-~ssp~~-~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~- 103 (161)
..++.+++++.|++|+.+|.+|++++.+++..... .....+ .|+. +||-...++.++.+|..+|++ ...+.....
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~~~~~ 84 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANLSSVP 84 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEESCCST
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecccccc
Confidence 45678889999999999999999999998753321 122223 2554 567777788999999999988 444433321
Q ss_pred --eecce---eEeeCC-eEEEEe------------eCCEEEEEECCCCcEE
Q 031361 104 --MRRMP---HVWDDG-ALLLGH------------EKTSVFFVDAKSGGMI 136 (161)
Q Consensus 104 --V~ssP---~v~~dg-~VyvGs------------~d~~lyalDa~TG~~~ 136 (161)
....| .+..|| .+|+++ .+..+..+|..+|+..
T Consensus 85 ~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (346)
T d1jmxb_ 85 GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135 (346)
T ss_dssp TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence 11122 233344 466665 3667777888777654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00025 Score=52.25 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=77.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
....++.++.||.++..|...++.+.++........ ....++..++-+..||.++..|..+++. ...+..++....+-
T Consensus 146 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~ 223 (342)
T d2ovrb2 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY-SLQFDGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGM 223 (342)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE-EEEECSSEEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEE
T ss_pred ccceeeeecCCCeEEEeecccceeeEEEcCcccccc-cccCCCCEEEEEeCCCeEEEeeccccee-eeEecccccceeEE
Confidence 455677788888888888888888777754332221 1223555566566778999999999988 55555544433333
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
... ++.++.|+.|+.++..|..+++....+....
T Consensus 224 ~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~ 257 (342)
T d2ovrb2 224 ELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPN 257 (342)
T ss_dssp EEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred ecC-CCEEEEEcCCCEEEEEecccccccccccccc
Confidence 334 4778899999999999999999998886543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.80 E-value=0.00029 Score=56.60 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=77.2
Q ss_pred CCEE-EEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECCCCCeec-cccCcc---cc
Q 031361 30 GDLA-LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKMKK-PSIDVG---EF 103 (161)
Q Consensus 30 ~~~V-~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~tG~~~~-w~~~~~---~~ 103 (161)
.+.. ...+.||+|..+|..||+++.+++.+..+++-....|+. +|+.+ .|+.+..+|..||+.+. ..+..+ +.
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG-RDARIDMIDLWAKEPTKVAEIKIGIEARS 109 (426)
T ss_dssp GGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe-CCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence 3444 457789999999999999999999987655432223665 34444 56799999999997522 122222 23
Q ss_pred eecceeEeeCC-eEEEEe-eCCEEEEEECCCCcEEEEecCCC
Q 031361 104 MRRMPHVWDDG-ALLLGH-EKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 104 V~ssP~v~~dg-~VyvGs-~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+..+|...-|| .+++++ .++.+...|.++|+++.......
T Consensus 110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~ 151 (426)
T d1hzua2 110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151 (426)
T ss_dssp EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccC
Confidence 44455554345 467765 78899999999999998776543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=97.75 E-value=0.00021 Score=58.56 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=80.1
Q ss_pred EEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecc-ccCcc---cceecce
Q 031361 33 ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKP-SIDVG---EFMRRMP 108 (161)
Q Consensus 33 V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w-~~~~~---~~V~ssP 108 (161)
++..+.||+|..+|.+||+++=+++++..+++.....|+..+.-++.|+.+..+|..+++.+.. ...++ .-+..+|
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence 5789999999999999999999999987665543333665433344677999999988875222 22222 2344566
Q ss_pred eEeeCCe-EEE-EeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 109 HVWDDGA-LLL-GHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 109 ~v~~dg~-Vyv-Gs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
..+.||. +|+ ++.++++..+|.+||+++-.+.....
T Consensus 115 ~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 115 MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc
Confidence 6554564 664 67899999999999999988875443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00028 Score=54.31 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=80.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..++.++.|+.++..|..++++...+.... ++.+ ... .++..++.+..++.++.+|.++|+. ...+...+.|.+
T Consensus 152 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~-l~~s~~~~~~~~~~~d~~v~i~d~~~~~~-~~~~~~~~~i~~ 229 (337)
T d1gxra_ 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC-IDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQIFS 229 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEE
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccee-ecccccccceEE
Confidence 56778889999999999999999988876533 3443 233 3556666666788999999999987 445555554543
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
--+..++..+++|+.|+.++..|..+++....+...
T Consensus 230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 265 (337)
T d1gxra_ 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE 265 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCS
T ss_pred EEEcccccccceeccccccccccccccccccccccc
Confidence 222123356788999999999999999987665443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=0.00048 Score=52.79 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=79.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+..++.|+.||.|+..|..+++.+..+.... ++.......++...+.+..++.+...|..++.. .......+.....
T Consensus 132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~ 210 (388)
T d1erja_ 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLSIEDGVTTV 210 (388)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEE
T ss_pred CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc-ccccccccccccc
Confidence 46688899999999999999999999987533 444322223445555555677999999888877 4434333333332
Q ss_pred eeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 108 PHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 108 P~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
-....+ ..++.|+.|+.++..|..+|+..+++....
T Consensus 211 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 247 (388)
T d1erja_ 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247 (388)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred cccCCCCCeEEEEcCCCeEEEeecccCccceeecccc
Confidence 222223 456789999999999999999999987644
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.69 E-value=0.00017 Score=53.68 Aligned_cols=107 Identities=13% Similarity=-0.028 Sum_probs=72.4
Q ss_pred EecCCeEEEEeCCCCceeEEE-ecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeC-
Q 031361 36 ATLNGTVHLVDTKRGESRWSF-SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDD- 113 (161)
Q Consensus 36 gs~DG~lyAvd~~tG~~~W~f-~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~d- 113 (161)
++.++.++.+|..+|+..-.- ..............+..+++.. ++.+..+|..+++. ......++.+.+ .++..|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~-~~~~~~~~~~~~-~~~s~dG 291 (337)
T d1pbyb_ 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNAS-IKRVPLPHSYYS-VNVSTDG 291 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEE-EEEEECSSCCCE-EEECTTS
T ss_pred cccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcE-EEEEcCCCCEEE-EEECCCC
Confidence 455667888999988866542 2222222222333333444443 45899999999998 666666655544 344434
Q ss_pred CeEEEEeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 114 GALLLGHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 114 g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
..+|+|+.+++++..|.+|++.+-+++..+..
T Consensus 292 ~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~~ 323 (337)
T d1pbyb_ 292 STVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323 (337)
T ss_dssp CEEEEESBSSEEEEEETTTCCEEEEEECGGGC
T ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEECCCCC
Confidence 45899999999999999999999999875444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.64 E-value=0.0014 Score=50.44 Aligned_cols=115 Identities=12% Similarity=0.063 Sum_probs=80.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC----eecceEee-C-CCeEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRN-D-PDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~----i~ssp~~~-d-~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
.+..++.++.||.++..|..+++..-++.+... |.+ .... | +..++-++.|+.++.+|.++|+. .-.++.+.
T Consensus 171 ~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~-v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~~~ 248 (325)
T d1pgua1 171 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD-VEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQ 248 (325)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE-EEECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTT
T ss_pred ccceEEEeecccccccccccccccceecccccCCCCccEE-eeeccccceeccccccccceeeeeeccccc-cccccccc
Confidence 345678899999999999999988877766432 332 2333 2 35666666788999999999987 44444332
Q ss_pred -cee---cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 103 -FMR---RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 103 -~V~---ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
.+. -++...+...+..|+.|+.++.-|..+|+.+.++....+.
T Consensus 249 ~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 295 (325)
T d1pgua1 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295 (325)
T ss_dssp BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc
Confidence 222 2333333346778999999999999999999888765543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.60 E-value=0.0013 Score=50.32 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=73.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEE----ecCCCee--cce------Ee-eCC----------CeEEecCCCCEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSF----SMGKPIY--SSF------TR-NDP----------DFYVDVGEDWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f----~t~~~i~--ssp------~~-~d~----------~~~V~~~ddg~Lya 85 (161)
.++..+..+.++.++.++..++++.-.. .....+. ..| .. .++ ..++....++.++.
T Consensus 223 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 302 (373)
T d2madh_ 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence 4456667778899999998877654222 1111110 000 00 111 22333334557888
Q ss_pred EECCCCCeeccccCcccceecceeEeeCCe--EE-EEeeCCEEEEEECCCCcEEEEecCCCCCCC
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDDGA--LL-LGHEKTSVFFVDAKSGGMICSHESDNSAST 147 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~dg~--Vy-vGs~d~~lyalDa~TG~~~W~~~~~~~~~~ 147 (161)
+|..+|+. .+.+..+..+. ...++.||+ +| .++.|+.++.+|.+||+++.+....+..++
T Consensus 303 ~d~~t~~~-~~~~~~~~~~~-~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~ 365 (373)
T d2madh_ 303 VTGLVGQT-SSQISLGHDVD-AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQ 365 (373)
T ss_pred EECCCCcE-EEEecCCCCee-EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCc
Confidence 99999998 66777666554 344554564 45 478999999999999999999986655543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.53 E-value=0.00066 Score=52.46 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=70.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC--------CeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK--------PIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--------~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~ 99 (161)
.+..++.++.||.++..|..+++..++|+... +|.+ .... ++..++-++.|+.++..|..+|++ ...+.
T Consensus 200 ~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~-~~~l~ 277 (311)
T d1nr0a1 200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG-LTWSPDGTKIASASADKTIKIWNVATLKV-EKTIP 277 (311)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cccCCCCCEEEEEeCCCeEEEEECCCCcE-EEEEE
Confidence 56788899999999999999999999987543 2322 2222 556666566788999999999988 33344
Q ss_pred cccceecce--eEeeCCeEEEEeeCCEEEEEECC
Q 031361 100 VGEFMRRMP--HVWDDGALLLGHEKTSVFFVDAK 131 (161)
Q Consensus 100 ~~~~V~ssP--~v~~dg~VyvGs~d~~lyalDa~ 131 (161)
.+..+.... +..++..++.++.||.+...|++
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 278 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 333222221 22234568899999999999874
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.51 E-value=0.00055 Score=51.93 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=77.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcee-EEEecCCCee-----c------ceEee-CCC-eEEecC---------CCCEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESR-WSFSMGKPIY-----S------SFTRN-DPD-FYVDVG---------EDWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~-W~f~t~~~i~-----s------sp~~~-d~~-~~V~~~---------ddg~Lya 85 (161)
.+..++.++.+|.+|..|..+|+.. +...+..... . ..... ++. .|+... .+..++.
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v 284 (355)
T d2bbkh_ 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 284 (355)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence 5667788899999999999888753 2221111100 0 01111 222 233211 1236888
Q ss_pred EECCCCCeeccccCcccceecceeEeeCCe--EEE-EeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCC
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDDGA--LLL-GHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLP 153 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~dg~--Vyv-Gs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~ 153 (161)
+|..+|+. ...++.++.+. +..++.||. +|+ ++.|++++.+|++||+++.++...+..++.-+..+
T Consensus 285 ~d~~t~~~-~~~~~~~~~~~-~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 285 LDAKTGER-LAKFEMGHEID-SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp EETTTCCE-EEEEEEEEEEC-EEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred EeCCCCcE-EEEecCCCCEE-EEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence 99999988 56666655443 334554564 554 56789999999999999999987777766544443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0011 Score=47.50 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=74.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+..++.|+.||+|+--|..+|+++.+++. .++|.+ ...++..++-++.|+.+...+..++.. .............
T Consensus 24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~--v~~~~~~l~s~s~D~~i~~~~~~~~~~-~~~~~~~~~~~~~ 100 (293)
T d1p22a2 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC--LQYDERVIITGSSDSTVRVWDVNTGEM-LNTLIHHCEAVLH 100 (293)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEESSSCCE-EEEECCCCSCEEE
T ss_pred cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEee--eecccceeecccccccccccccccccc-ccccccccccccc
Confidence 578999999999999999999999999974 334532 223666666666788999999988877 5544444333333
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
.... .+.+..+..++.+...|..+.+..
T Consensus 101 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (293)
T d1p22a2 101 LRFN-NGMMVTCSKDRSIAVWDMASPTDI 128 (293)
T ss_dssp EECC-TTEEEEEETTSCEEEEECSSSSCC
T ss_pred cccc-ccceeecccccceeEeeccccccc
Confidence 2223 366778888888888887776643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.001 Score=51.22 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-Ceecc---eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSS---FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-F 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ss---p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~ 103 (161)
.+..+..++.||.|+..|.++|+.+-+++... ++.+. +...|+..++-++.|+.++..|..+|+. .-.+..+. .
T Consensus 217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~ 295 (325)
T d1pgua1 217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQ 295 (325)
T ss_dssp TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE-EEEEECCTTC
T ss_pred cceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE-EEEEEecCCc
Confidence 45678889999999999999999998887543 33322 2224666677677788999999999987 33333222 1
Q ss_pred eecc---eeEeeCCeEEEEeeCCEEEEEE
Q 031361 104 MRRM---PHVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 104 V~ss---P~v~~dg~VyvGs~d~~lyalD 129 (161)
+... -.-..++.++.||.|++++.-|
T Consensus 296 ~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 296 LGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp GGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 1111 1123446788899999998776
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.40 E-value=0.0011 Score=49.16 Aligned_cols=109 Identities=13% Similarity=-0.022 Sum_probs=70.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe--cCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc---cc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS--MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG---EF 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~--t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~---~~ 103 (161)
.+..+++|+.||.|+..|..+++..-... -..+|.+-....++..++-+..++.++.+|..++.......... +.
T Consensus 147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~ 226 (299)
T d1nr0a2 147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 226 (299)
T ss_dssp TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56788999999999999998888654332 23445432222355666666677799999988876622222211 22
Q ss_pred eecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 104 MRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 104 V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
|.+- ... ++..++.|+.|+.++.-|.++++....
T Consensus 227 v~~l-~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 261 (299)
T d1nr0a2 227 VACV-SWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261 (299)
T ss_dssp EEEE-EECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred cccc-cccccccceEEEcCCCEEEEEECCCCCcceE
Confidence 3321 122 324577899999999999998865433
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.38 E-value=0.0013 Score=49.29 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecC-CC-CEEEEEECCCCCeeccccCccc
Q 031361 26 SPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVG-ED-WKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~-dd-g~Lyald~~tG~~~~w~~~~~~ 102 (161)
||..+.++-+ ..+|.||..|..+|+.+-. ..+..+.. +... |+...+.++ ++ ..++..|.++|+++++.-...
T Consensus 11 SP~dG~~~a~-~~~g~v~v~d~~~~~~~~~-~~~~~v~~-~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~- 86 (360)
T d1k32a3 11 SPLDGDLIAF-VSRGQAFIQDVSGTYVLKV-PEPLRIRY-VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG- 86 (360)
T ss_dssp EECGGGCEEE-EETTEEEEECTTSSBEEEC-SCCSCEEE-EEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC-
T ss_pred cCCCCCEEEE-EECCeEEEEECCCCcEEEc-cCCCCEEE-EEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc-
Confidence 4445555544 4579999999999988743 33344543 3333 555444333 33 368888999998855543222
Q ss_pred ceecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.|.. .....| ..+.+++.++.++..|..+|+....+....
T Consensus 87 ~v~~-~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
T d1k32a3 87 NVFA-MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 127 (360)
T ss_dssp SEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred eEEe-eeecccccccceeccccccccccccccceeeeeeccc
Confidence 2322 233333 457889999999999999999887776544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.24 E-value=0.0016 Score=48.07 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=65.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-cce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V 104 (161)
.+..+++|+.||.++..|..+++..-++.... ++.+-.-..++..++-+.+||.++.+|..+|+. .-.+..+ +.|
T Consensus 237 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~H~~~V 315 (340)
T d1tbga_ 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRV 315 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE-EEEEcCCCCCE
Confidence 56789999999999999999999988875433 233221122455555556778999999999988 4445443 233
Q ss_pred ecceeEeeC-CeEEEEeeCCEEEE
Q 031361 105 RRMPHVWDD-GALLLGHEKTSVFF 127 (161)
Q Consensus 105 ~ssP~v~~d-g~VyvGs~d~~lya 127 (161)
.+- .+..| ..++.|+.|++++.
T Consensus 316 ~~l-~~s~d~~~l~s~s~Dg~v~i 338 (340)
T d1tbga_ 316 SCL-GVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp EEE-EECTTSSCEEEEETTSCEEE
T ss_pred EEE-EEeCCCCEEEEEccCCEEEE
Confidence 321 22333 45778999988764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.0043 Score=44.22 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=69.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
....++.++.||.++..|..+++++.+++........... ++..++-+..|+.++..|..+++. ...+.........
T Consensus 147 ~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~- 223 (293)
T d1p22a2 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRC- 223 (293)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEE-
T ss_pred cccccccccCCCceeeecCCCCcEEEEEcccccccccccC-CCCeEEEecCCCEEEEEeccccee-eeeecccceeeee-
Confidence 5677889999999999999999999999865433322222 345555555677999999999888 4444333322222
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~T 132 (161)
...+...++.|+.|+.++.-|..+
T Consensus 224 ~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 224 IRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp EECCSSEEEEEETTSCEEEEEHHH
T ss_pred ccccceEEEEEcCCCEEEEEECCC
Confidence 122335678899999998877544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.04 E-value=0.0052 Score=46.22 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEEe-----cCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEec---------CCCCEEEEEEC
Q 031361 25 ASPESGDLALVAT-----LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDV---------GEDWKLYFHRK 88 (161)
Q Consensus 25 ~s~~~~~~V~vgs-----~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~---------~ddg~Lyald~ 88 (161)
+.+..+..+|+.+ .+..+|.+|..+|+++++++.+..- ++++. |+. +|+-. ..++.+..+|.
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 3356788888874 4668999999999999999876533 23343 443 55532 12458999999
Q ss_pred CCCCeeccccCccc----ceecce---eEeeC-CeEEEEe--eCCEEEEEECCCCcEEEEecCC
Q 031361 89 GIGKMKKPSIDVGE----FMRRMP---HVWDD-GALLLGH--EKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 89 ~tG~~~~w~~~~~~----~V~ssP---~v~~d-g~VyvGs--~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.+|+. ........ .+...| .+..| +.+++.+ .+..++..|..+|+.+......
T Consensus 86 ~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T d2bbkh_ 86 VTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 148 (355)
T ss_dssp TTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecC
Confidence 99988 44333221 222233 23333 4577764 5678999999999999887654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0052 Score=45.53 Aligned_cols=110 Identities=10% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCEEEEEe-cCCeEEEEeCCCC---ceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 30 GDLALVAT-LNGTVHLVDTKRG---ESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG---~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
+.+|||++ .|++||..|..+. +.+-+++.++.+.+-....|+. +|+.+.+++.+++++..++.. ...+......
T Consensus 3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~-~~~~~~~~~~ 81 (333)
T d1ri6a_ 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAESAL 81 (333)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEC
T ss_pred ceEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEeeeccc
Confidence 45787777 8888988886544 4456677776665432233554 567777777887766554433 2222223334
Q ss_pred eccee---EeeCC-eEEEEee-CCEEEEEECCCCcEEEEec
Q 031361 105 RRMPH---VWDDG-ALLLGHE-KTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 105 ~ssP~---v~~dg-~VyvGs~-d~~lyalDa~TG~~~W~~~ 140 (161)
..+|. +..|| .+|+++. +.++...+..++.......
T Consensus 82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~ 122 (333)
T d1ri6a_ 82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122 (333)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc
Confidence 44554 44455 4777764 5677777777666655544
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.84 E-value=0.007 Score=45.06 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=70.2
Q ss_pred CCCEEEEEecC-C-eEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLN-G-TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~D-G-~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..+++++.| | .|+..|..+|+++=.......+..-.-..|+..++.+..++.++..+..+++. ...+........
T Consensus 53 Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (360)
T d1k32a3 53 DTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMIT 131 (360)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCC
T ss_pred CCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccce-eeeeeccccccc
Confidence 44455555544 3 78999999998772222223333322223667777777888999999999988 555555555555
Q ss_pred ceeEeeCCeEEE-----------EeeCCEEEEEECCCCcEEEEec
Q 031361 107 MPHVWDDGALLL-----------GHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~dg~Vyv-----------Gs~d~~lyalDa~TG~~~W~~~ 140 (161)
++....||..++ +..+..++..|.++|+......
T Consensus 132 ~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~ 176 (360)
T d1k32a3 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 176 (360)
T ss_dssp CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred chhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc
Confidence 666665554332 3445578899999988766543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.80 E-value=0.013 Score=44.91 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=21.2
Q ss_pred eEeeCCeEEEE-eeCCEEEEEECCCCcEEE
Q 031361 109 HVWDDGALLLG-HEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 109 ~v~~dg~VyvG-s~d~~lyalDa~TG~~~W 137 (161)
++..++.+|++ +.++.+|.+|..+|....
T Consensus 119 ~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~ 148 (302)
T d2p4oa1 119 TPLSDTQYLTADSYRGAIWLIDVVQPSGSI 148 (302)
T ss_dssp EESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEccCCCEEeeccccccceeeeccCCccee
Confidence 34456888887 467899999988886553
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.45 E-value=0.0097 Score=46.08 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=67.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCc--eeEEEec-CCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCee-ccccC-ccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGE--SRWSFSM-GKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMK-KPSID-VGE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~--~~W~f~t-~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~-~w~~~-~~~ 102 (161)
.+..+.+|+.||.|+-.|..+++ .+..++- .++|.+ ... .++..++-++.|+.++..|..++..+ ...+. ..+
T Consensus 18 dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~-l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~ 96 (371)
T d1k8kc_ 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTG-VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96 (371)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEE-EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEE-EEECCCCCEEEEEECCCeEEEEeecccccccccccccccc
Confidence 56678889999999999998886 4555653 345654 333 35666666677889988888776541 11111 122
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
.|.+--..-++..+++|+.|+.+...+..+++..+.
T Consensus 97 ~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~ 132 (371)
T d1k8kc_ 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132 (371)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred cccccccccccccceeecccCcceeeeeeccccccc
Confidence 333322222335678899999777666555554444
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.027 Score=40.44 Aligned_cols=110 Identities=8% Similarity=-0.104 Sum_probs=66.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecce----Eee-CCCeEEecCCCCEEEEEECCCCCeeccccCccc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF----TRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE- 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp----~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~- 102 (161)
.++.++.++.||.++..|..+++....+.......... ... ++..++-+..+|.+...+...... .+......
T Consensus 159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~-~~~~~~~~~ 237 (342)
T d1yfqa_ 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-DYNSSKRFA 237 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-STTCTTCEE
T ss_pred cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc-eeeccccce
Confidence 67788999999999999998887765544332222111 111 233444444566776665543332 11111100
Q ss_pred ---------------c---eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 103 ---------------F---MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 103 ---------------~---V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
. +.-+| +.+.++.|+.|+.++.-|.++++.+.++...
T Consensus 238 ~~~~~~~~~~~~~~~~v~~l~~sp---~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~ 292 (342)
T d1yfqa_ 238 FRCHRLNLKDTNLAYPVNSIEFSP---RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECT---TTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred eeeeeeccCCCcccccceeEEecC---CccEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 0 11122 2356788999999999999999999988643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=96.38 E-value=0.0088 Score=45.47 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=48.2
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCC--eEEecCCCCEEEEEECCCCCe
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD--FYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~--~~V~~~ddg~Lyald~~tG~~ 93 (161)
+.+.....++.++.+|..+|+++++++.+..+.+-....|+. +|+-...++.++.+|..||++
T Consensus 289 ~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred ceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 344456677889999999999999999888766532233665 566566777999999999998
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.35 E-value=0.043 Score=42.31 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=54.1
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc---e
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF---M 104 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~---V 104 (161)
.++.+|+.+ ..++||.+|.++|+.. .++.+..+.+-....++.++|.+ ++ .++.+|..+|+...+...-... -
T Consensus 28 ~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~ 104 (295)
T d2ghsa1 28 ASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNR 104 (295)
T ss_dssp TTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCccc
Confidence 466677665 6789999999998775 45555554433333466677765 34 5999999999874442111110 1
Q ss_pred ecceeEeeCCeEEEEee
Q 031361 105 RRMPHVWDDGALLLGHE 121 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~ 121 (161)
-..-.+..+|.+|+|+.
T Consensus 105 ~nd~~vd~~G~iw~~~~ 121 (295)
T d2ghsa1 105 SNDGRMHPSGALWIGTM 121 (295)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred ceeeEECCCCCEEEEec
Confidence 11223444577777753
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.34 E-value=0.01 Score=45.85 Aligned_cols=64 Identities=19% Similarity=0.047 Sum_probs=46.3
Q ss_pred CEEEEEECCCCCeeccccCcccceecceeEeeCCe--EEE-EeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 81 WKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGA--LLL-GHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 81 g~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~--Vyv-Gs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
.+++.+|..+|+. .-.+..+..+. +..++.||. +|+ ++.++.++.+|++|||++.+.+.+..+.
T Consensus 294 ~~v~v~D~~t~~~-~~~~~~~~~~~-~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~ 360 (368)
T d1mdah_ 294 ENTSSVTASVGQT-SGPISNGHDSD-AIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp EEEEEEESSSCCE-EECCEEEEEEC-EEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ceEEEEECCCCcE-eEEecCCCcee-EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCC
Confidence 4688889999988 55555555433 355555553 665 4568899999999999999998765544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.047 Score=39.71 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=69.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccC--cccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSID--VGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~--~~~~V~s 106 (161)
.++..++...++.++.++..+|+..-+++...+... ....++...+++.+++.++..+..+.+. ..... ....+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~ 167 (287)
T d1pgua2 90 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA-VSLSQNYVAVGLEEGNTIQVFKLSDLEV-SFDLKTPLRAKPSY 167 (287)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE-EEECSSEEEEEETTTSCEEEEETTEEEE-EEECSSCCSSCEEE
T ss_pred cCCceEEEeecccceeeeccceeeeeeccccceeee-eeccCcceeeeccccceeeeeeccccce-eeeeeeccCCceeE
Confidence 466777788888999999999999988877665432 1222345667777776677777655544 22222 1222221
Q ss_pred ceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 107 MPHVWDD-GALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 107 sP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
-....| ..+++|+.|+.++..|..+++.+-.
T Consensus 168 -~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 199 (287)
T d1pgua2 168 -ISISPSETYIAAGDVMGKILLYDLQSREVKTS 199 (287)
T ss_dssp -EEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred -EEeccCccccccccccccccceeecccccccc
Confidence 122323 4577899999999999999987643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.038 Score=40.23 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=60.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcee---EEEecCCCeec---ceE-------eeCCCeEEecCCCCEEEEEECCCCCeec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESR---WSFSMGKPIYS---SFT-------RNDPDFYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~---W~f~t~~~i~s---sp~-------~~d~~~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
.+..+++|+.||.|+-.|..+++.. |.++++ ++.+ +|. ..++..++-++.|+.++..|..++..+.
T Consensus 173 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~ 251 (287)
T d1pgua2 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII 251 (287)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred Cccccccccccccccceeeccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEE
Confidence 5678999999999999999999864 444333 2222 111 1134556656677899999987754423
Q ss_pred cccCcc-cceecceeEeeCCeEEEEeeCCEEEE
Q 031361 96 PSIDVG-EFMRRMPHVWDDGALLLGHEKTSVFF 127 (161)
Q Consensus 96 w~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lya 127 (161)
.....+ +.|.+- ...+++.++.++.|+.+..
T Consensus 252 ~~~~~h~~~V~~v-~~~~~~~l~s~g~D~~v~i 283 (287)
T d1pgua2 252 KALNAHKDGVNNL-LWETPSTLVSSGADACIKR 283 (287)
T ss_dssp EETTSSTTCEEEE-EEEETTEEEEEETTSCEEE
T ss_pred EEeCCCCCCeEEE-EECCCCEEEEEECCCeEEE
Confidence 333332 334333 3344577888888887754
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.27 E-value=0.02 Score=42.01 Aligned_cols=99 Identities=6% Similarity=-0.059 Sum_probs=61.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec----CCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCc---
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM----GKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV--- 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t----~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~--- 100 (161)
.+..++.++.||.++..|..+++..-.... ..+|.+ ... .++..++-++.|+.++..|..+++.+......
T Consensus 190 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 268 (299)
T d1nr0a2 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC-VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268 (299)
T ss_dssp TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSST
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCC
Confidence 567889999999999999988876644432 123333 222 25566666667889999998887652222211
Q ss_pred ccceecceeEeeCCeEEEEeeCCEEEEEE
Q 031361 101 GEFMRRMPHVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~VyvGs~d~~lyalD 129 (161)
...+.. -+..+++.++.|+.|+++..=|
T Consensus 269 ~~~v~~-~~~~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 269 MSSVNS-VIWLNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp TSCEEE-EEEEETTEEEEEETTSCEEEEE
T ss_pred CCcEEE-EEECCCCEEEEEeCCCEEEEEe
Confidence 122222 2334456777888888876544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.11 E-value=0.02 Score=44.11 Aligned_cols=107 Identities=9% Similarity=-0.084 Sum_probs=68.9
Q ss_pred CCCEEEEEe----------cCCeEEEEeCCCCceeEEEecCCC--e-----ecceEee-CC-CeEEecCCCCEEEEEECC
Q 031361 29 SGDLALVAT----------LNGTVHLVDTKRGESRWSFSMGKP--I-----YSSFTRN-DP-DFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 29 ~~~~V~vgs----------~DG~lyAvd~~tG~~~W~f~t~~~--i-----~ssp~~~-d~-~~~V~~~ddg~Lyald~~ 89 (161)
.+.++++.+ .|+.|+.+|..+|++.+..+.... . ....++. |+ .+|+...+++.++.+|..
T Consensus 75 Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~ 154 (368)
T d1mdah_ 75 SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEET
T ss_pred CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 456677654 478899999999999999874321 1 1122232 44 366666667799999999
Q ss_pred CCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 90 IGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 90 tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
+++. .............| ..+...+..+.|+++..++..++.....
T Consensus 155 ~~~~-~~~~~~~~~~~~~~--~~~~~~v~~~~Dg~~~~~~~~~~~~~~~ 200 (368)
T d1mdah_ 155 GASD-DQLTKSASCFHIHP--GAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp TTEE-EEEEECSSCCCCEE--EETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred CCcE-eEEeeccCcceEcc--CCCceEEEEcCCCCEEEEEecCCceeee
Confidence 9988 44444443333333 2234466788999999998765554433
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=95.92 E-value=0.11 Score=41.72 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=77.2
Q ss_pred CCCEEEE-EecCCeEEEEeCCCCceeEEEecCCCee------cce------EeeCCC-eEEecCCCCEEEEEECCCCCe-
Q 031361 29 SGDLALV-ATLNGTVHLVDTKRGESRWSFSMGKPIY------SSF------TRNDPD-FYVDVGEDWKLYFHRKGIGKM- 93 (161)
Q Consensus 29 ~~~~V~v-gs~DG~lyAvd~~tG~~~W~f~t~~~i~------ssp------~~~d~~-~~V~~~ddg~Lyald~~tG~~- 93 (161)
.+..+|+ ++.|+.+..+|..+|+++=.++...... ..+ ...|+. +++-..+++.+..+|..+++.
T Consensus 119 DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~ 198 (432)
T d1qksa2 119 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL 198 (432)
T ss_dssp TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence 4556665 6679999999999999987765432111 000 011333 345555677888888888764
Q ss_pred eccccCcccceecceeEeeCCe-EEEEe-eCCEEEEEECCCCcEEEEecCCCCCCCcCC
Q 031361 94 KKPSIDVGEFMRRMPHVWDDGA-LLLGH-EKTSVFFVDAKSGGMICSHESDNSASTLGS 150 (161)
Q Consensus 94 ~~w~~~~~~~V~ssP~v~~dg~-VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~~~~~~ 150 (161)
+.+.+.+++....- .+..||. +|+++ .+..+..+|.+++++++...+.....+.+.
T Consensus 199 ~~~~i~~g~~~~~~-~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~ 256 (432)
T d1qksa2 199 KTTEISAERFLHDG-GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 256 (432)
T ss_dssp EEEEEECCSSEEEE-EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred eEEEEcccCccccc-eECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCc
Confidence 23555555443332 2333454 67766 455888999999999999988776555443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.83 E-value=0.012 Score=46.64 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=50.0
Q ss_pred eEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCC-eEEEEeeCCEEEEEECCCCcEEEE
Q 031361 73 FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDG-ALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 73 ~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg-~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
.+|-..+||.+..+|..||++ ...++.++.+.+ -+++-|| .+|+++.|+++...|.+||+....
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~-~~~l~~g~~~~~-vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~ 98 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKI-VKVIDTGYAVHI-SRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 98 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSE-EEEEECCSSEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred EEEEEcCCCEEEEEECCCCcE-EEEEeCCCCeeE-EEECCCCCEEEEEeCCCCEEEEEccCCceeEE
Confidence 457777889999999999999 777888765543 3444344 578999999999999999986543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.44 E-value=0.12 Score=39.53 Aligned_cols=110 Identities=6% Similarity=-0.075 Sum_probs=61.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec------------------C-CCeecceEe-eCCCeEEecCCCCEEEEEEC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM------------------G-KPIYSSFTR-NDPDFYVDVGEDWKLYFHRK 88 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t------------------~-~~i~ssp~~-~d~~~~V~~~ddg~Lyald~ 88 (161)
.+..+..|+.||.++..|...++....... . ..+.+ ... .++..++-+..|+.++..|.
T Consensus 152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~s~~~d~~i~iwd~ 230 (371)
T d1k8kc_ 152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG-VCFSANGSRVAWVSHDSTVCLADA 230 (371)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE-EEECSSSSEEEEEETTTEEEEEEG
T ss_pred cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE-EEeecccccccccccCCcceEEee
Confidence 456777899999999999877654443211 0 01111 111 24455555556778888888
Q ss_pred CCCCeeccccCccc-ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 89 GIGKMKKPSIDVGE-FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 89 ~tG~~~~w~~~~~~-~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.+++. ...+..+. .|.+- ....|+.++.++.|+.+...+..++...|.+..
T Consensus 231 ~~~~~-~~~~~~~~~~v~s~-~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~ 282 (371)
T d1k8kc_ 231 DKKMA-VATLASETLPLLAV-TFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG 282 (371)
T ss_dssp GGTTE-EEEEECSSCCEEEE-EEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred ecccc-eeeeecccccceee-eecCCCCEEEEEcCCceEEEEeeCCCceEEEee
Confidence 88876 33343332 23322 223457777666677554444444444455543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.39 E-value=0.24 Score=37.03 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=60.0
Q ss_pred CEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecce-Eee--CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 31 DLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSF-TRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 31 ~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp-~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
+.+|+.+ ..+.++.+|. +|+.+.++.......... .+. ++.+|+-....+.++.+|. +|+. .+.+.... ...
T Consensus 125 G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~-~~~~g~~g-~~~ 200 (279)
T d1q7fa_ 125 GRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQY-LRQIGGEG-ITN 200 (279)
T ss_dssp SCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCE-EEEESCTT-TSC
T ss_pred CcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCce-eeeecccc-ccc
Confidence 4444443 3455666665 577777775544332211 111 2345554445557777774 4655 44443222 223
Q ss_pred cee---EeeCCeEEEEee--CCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPH---VWDDGALLLGHE--KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~---v~~dg~VyvGs~--d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.|. +..+|.+||... +..+...| .+|+.++++....
T Consensus 201 ~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~ 241 (279)
T d1q7fa_ 201 YPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV 241 (279)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS
T ss_pred CCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC
Confidence 453 555677998753 34577667 6899998887654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.89 E-value=0.15 Score=39.33 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=18.0
Q ss_pred CCCeEEecCCCCEEEEEECCCCCe
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
++.+||.....+.++.+|+++|+.
T Consensus 236 ~GnlyVa~~~~g~I~~~dp~~g~~ 259 (314)
T d1pjxa_ 236 DNNLLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCBSC
T ss_pred CCcEEEEEcCCCEEEEEeCCCCEE
Confidence 456777766667899999888876
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.1 Score=37.20 Aligned_cols=107 Identities=10% Similarity=-0.001 Sum_probs=64.7
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc--eEeeCCCeEEecCCCCEEEEEECCCCCeecccc---Ccccc-
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS--FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI---DVGEF- 103 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss--p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~---~~~~~- 103 (161)
+..++.|+.||.++..|..++............... ....+...++.+..++.+...|.+++....... .....
T Consensus 69 ~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T d1yfqa_ 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred CCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccccc
Confidence 447889999999999999999988887655432221 122345566666667777777765443311111 11100
Q ss_pred eecc--eeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 104 MRRM--PHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 104 V~ss--P~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
.... .....+..++.|+.|+.++..|..+++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 183 (342)
T d1yfqa_ 149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC
T ss_pred ceeeeeeeeccCCceeeecCCCcEEEEecccCccc
Confidence 0001 11222356788999999999998777643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.40 E-value=0.41 Score=35.64 Aligned_cols=68 Identities=6% Similarity=0.097 Sum_probs=38.1
Q ss_pred CCEEEEE-ecCCeEEEEeCCCCceeEEEecCCCeecce--Ee-eCCCeEEec-CCCCEEEEEECCCCCeeccccCc
Q 031361 30 GDLALVA-TLNGTVHLVDTKRGESRWSFSMGKPIYSSF--TR-NDPDFYVDV-GEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 30 ~~~V~vg-s~DG~lyAvd~~tG~~~W~f~t~~~i~ssp--~~-~d~~~~V~~-~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
++.+|+. ...+.|+.+|. +|+.+++|.+.+....+. .+ .++++||-- .++..+..++ .+|+. .+.+..
T Consensus 167 ~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~-~~~~~~ 239 (279)
T d1q7fa_ 167 KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQL-ISALES 239 (279)
T ss_dssp SSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCE-EEEEEE
T ss_pred ceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCE-EEEEeC
Confidence 3445544 44567777776 688888886554433221 12 144566643 3344677776 46876 444433
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.23 E-value=0.5 Score=33.60 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=64.6
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecC----C--CCEEEEEECCCCCeeccccCccc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVG----E--DWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~----d--dg~Lyald~~tG~~~~w~~~~~~ 102 (161)
++.|.+. .+|.||.+|..+|+++ ++..+......|... |+..+++.. . .+.+|.++..+|+..+....-..
T Consensus 12 G~~v~f~-~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~ 89 (281)
T d1k32a2 12 GDRIIFV-CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK 89 (281)
T ss_dssp TTEEEEE-ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred CCEEEEE-eCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence 5666554 5789999999999886 665554455566655 666554432 1 13699999999988554333221
Q ss_pred -----ceecceeEeeCCe-EEEE------eeCCEEEEEECCCCcEEEEe
Q 031361 103 -----FMRRMPHVWDDGA-LLLG------HEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 103 -----~V~ssP~v~~dg~-VyvG------s~d~~lyalDa~TG~~~W~~ 139 (161)
.....|....|+. +++. .....++.++..+++.....
T Consensus 90 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (281)
T d1k32a2 90 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN 138 (281)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC
T ss_pred ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec
Confidence 1223344444454 4443 22335778887777765543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.98 E-value=0.18 Score=39.83 Aligned_cols=103 Identities=8% Similarity=-0.070 Sum_probs=65.6
Q ss_pred EEEecCCeEEEEeCCCCceeEEEec------CCCeecceEe-eCCCeEEecC---------CCCEEEEEECCCCCeeccc
Q 031361 34 LVATLNGTVHLVDTKRGESRWSFSM------GKPIYSSFTR-NDPDFYVDVG---------EDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 34 ~vgs~DG~lyAvd~~tG~~~W~f~t------~~~i~ssp~~-~d~~~~V~~~---------ddg~Lyald~~tG~~~~w~ 97 (161)
|+-..||.++.+|..+|+..=-++. ...|.+ +.+ .|+..++... .++.+|.+|.++|+.+...
T Consensus 30 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~-~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~ 108 (470)
T d2bgra1 30 YLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSIND-YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (470)
T ss_dssp EEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCE-EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred EEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccce-eEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccc
Confidence 3346789999999999997622321 122332 333 3665444332 2457888999999874433
Q ss_pred cCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 98 IDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 98 ~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
.. ..-...|..+-||..++-..+..+|..+..+|+.+...
T Consensus 109 ~~--~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 109 RI--PNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRIT 148 (470)
T ss_dssp CC--CTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECC
T ss_pred cC--CccccccccccCcceeeEeecccceEEECCCCceeeee
Confidence 33 22345677666676555567899999999999876543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=93.93 E-value=0.44 Score=35.78 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=17.1
Q ss_pred eeCCEEEEEECCCCcEEEEecCCC
Q 031361 120 HEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 120 s~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
..++++|+-|...+ .+|+++...
T Consensus 121 ~~~g~~~v~~~~~~-~i~~~~~~~ 143 (302)
T d2p4oa1 121 LSDTQYLTADSYRG-AIWLIDVVQ 143 (302)
T ss_dssp SSSSEEEEEETTTT-EEEEEETTT
T ss_pred ccCCCEEeeccccc-cceeeeccC
Confidence 46889999997766 568877553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.52 E-value=1 Score=34.31 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=29.7
Q ss_pred CCCeEEecC----CCCEEEEEECCCCCeeccccCcccceecce---eEeeCCeEEEEeeC-------CEEEEEECCCCc
Q 031361 70 DPDFYVDVG----EDWKLYFHRKGIGKMKKPSIDVGEFMRRMP---HVWDDGALLLGHEK-------TSVFFVDAKSGG 134 (161)
Q Consensus 70 d~~~~V~~~----ddg~Lyald~~tG~~~~w~~~~~~~V~ssP---~v~~dg~VyvGs~d-------~~lyalDa~TG~ 134 (161)
|+.+||-.. ..+.++.++..++.+......... ...| ++..+|.+|++..+ +.+|.+|++.+.
T Consensus 92 dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~ 168 (319)
T d2dg1a1 92 DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST--AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 168 (319)
T ss_dssp TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS--CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCc--ccCCcceeEEeccceeecccccccccCcceeEEEecccce
Confidence 445565321 134567777666655221111111 1122 23445777777533 357777655443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.78 E-value=0.66 Score=35.20 Aligned_cols=90 Identities=12% Similarity=-0.018 Sum_probs=54.4
Q ss_pred EeCCCCceeEEEecCCCeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeC
Q 031361 45 VDTKRGESRWSFSMGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEK 122 (161)
Q Consensus 45 vd~~tG~~~W~f~t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d 122 (161)
+-+.+.+.+|.- ...+-..|... ++.+|.--..+++|+.+|+++|+...|.+. ..+.+ -+..+||.+++++.+
T Consensus 4 ~~~~~~~~~~~~--~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~--~~~~~-i~~~~dg~l~va~~~ 78 (295)
T d2ghsa1 4 VFPFAGRVLDET--PMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP--FMGSA-LAKISDSKQLIASDD 78 (295)
T ss_dssp EECCCCEEEECS--CCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS--SCEEE-EEEEETTEEEEEETT
T ss_pred ccceeEEEEcCC--CCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC--CCcEE-EEEecCCCEEEEEeC
Confidence 445566666642 22333445433 333433222456899999999987555443 33333 233456889999864
Q ss_pred CEEEEEECCCCcEEEEec
Q 031361 123 TSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 123 ~~lyalDa~TG~~~W~~~ 140 (161)
.++.+|.+||+..--..
T Consensus 79 -gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 79 -GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp -EEEEEETTTCCEEEEEC
T ss_pred -ccEEeecccceeeEEee
Confidence 79999999999764443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=92.40 E-value=1 Score=34.20 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=26.4
Q ss_pred EeeCCeEEEEee-CCEEEEEECCCCcEEEEecCCC
Q 031361 110 VWDDGALLLGHE-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 110 v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+..+|.+|+... .+.++.+|+ +|+++.++....
T Consensus 235 vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~ 268 (319)
T d2dg1a1 235 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG 268 (319)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred EcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence 455688999875 689999996 799998887654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.79 E-value=0.96 Score=32.11 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=56.4
Q ss_pred CCEEEEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC---CCEEEEEECCCCCeeccccCcccc
Q 031361 30 GDLALVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 30 ~~~V~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
+...++...+| .|+..+..++...-.. ........|... |+..+++... .-.++..+..++.. ... ....
T Consensus 139 ~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~~ 214 (269)
T d2hqsa1 139 QNLAFTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL--SSTF 214 (269)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC--CCSS
T ss_pred ccceecccccCCceEeeeecccccceeee-cccccccccccccccceeEEEeecCCceeeeEeecccccc-eEe--ecCc
Confidence 33444444454 5666666655433211 122222333333 5555554332 23577778887776 332 3334
Q ss_pred eecceeEeeCCe-EEEEee---CCEEEEEECCCCcEEEE
Q 031361 104 MRRMPHVWDDGA-LLLGHE---KTSVFFVDAKSGGMICS 138 (161)
Q Consensus 104 V~ssP~v~~dg~-VyvGs~---d~~lyalDa~TG~~~W~ 138 (161)
....|..+-||. |++.+. ...||.+|+.+++...-
T Consensus 215 ~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l 253 (269)
T d2hqsa1 215 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 253 (269)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 566888876664 444443 34799999887776543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.24 E-value=0.42 Score=36.57 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=50.1
Q ss_pred CCCEEEEEecCCe---EEEEeCCCCceeEEEecCCC--------------eecceEe-eCCCeEEecCCCCEEEEEECCC
Q 031361 29 SGDLALVATLNGT---VHLVDTKRGESRWSFSMGKP--------------IYSSFTR-NDPDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 29 ~~~~V~vgs~DG~---lyAvd~~tG~~~W~f~t~~~--------------i~ssp~~-~d~~~~V~~~ddg~Lyald~~t 90 (161)
.+..++.|+.|++ ++..|..+|+.+++++.... |.+ ..+ .|+..++-++.|+.+...|.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~-l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS-LSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE-EEECSSSSEEEEEETTSEEEEEETTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceee-eccCCCCCeeEEECCCCEEEEEECCC
Confidence 5678999999874 78889999999999864321 211 122 2556777777888999999999
Q ss_pred CCeeccccCc
Q 031361 91 GKMKKPSIDV 100 (161)
Q Consensus 91 G~~~~w~~~~ 100 (161)
|+. ...++.
T Consensus 321 g~~-~~~l~g 329 (393)
T d1sq9a_ 321 KER-ITTLNM 329 (393)
T ss_dssp TEE-EEEEEC
T ss_pred CCE-EEEECC
Confidence 977 544443
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=1.2 Score=32.18 Aligned_cols=109 Identities=12% Similarity=0.157 Sum_probs=57.8
Q ss_pred EecCCeEEEEeCCCCceeEEEecCCCeecceEee-------CC-Ce-EEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 36 ATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-------DP-DF-YVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 36 gs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-------d~-~~-~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+.+|.+|++ .|+..|++...+.......+. ++ |. |... +++.+|.+. |.. -|.+.-.+....
T Consensus 15 ~~~~g~~y~F---kg~~~wr~~~~~~~~~p~~i~~~w~~lp~~IDAAf~~~-~~~~~yffk---g~~-~w~y~~~~~~~g 86 (192)
T d1pexa_ 15 TSLRGETMIF---KDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHP-SHDLIFIFR---GRK-FWALNGYDILEG 86 (192)
T ss_dssp EEETTEEEEE---ETTEEEEECSSSSCCEEEEHHHHCTTSCSSCCEEEEET-TTTEEEEEE---TTE-EEEESTTCCCTT
T ss_pred EEcCCeEEEE---ECCEEEEEcCCCCCCcccchhhhCcCCCCcccceEEEc-CCCEEEEEc---CCE-EEEEcCCcccCC
Confidence 3568999998 499999998766433222221 11 22 3222 344666554 333 444443332222
Q ss_pred ceeE---------ee-CCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCce
Q 031361 107 MPHV---------WD-DGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMK 155 (161)
Q Consensus 107 sP~v---------~~-dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~ 155 (161)
-|-- .+ =...+..+.++.+|.. .|...|+|+........+.+-+|+
T Consensus 87 yPk~i~~~~~~~~~~~idaA~~~~~~~~~y~F---kg~~y~~y~~~~~~~~~~~pk~I~ 142 (192)
T d1pexa_ 87 YPKKISELGLPKEVKKISAAVHFEDTGKTLLF---SGNQVWRYDDTNHIMDKDYPRLIE 142 (192)
T ss_dssp CSEESTTTTCCTTCCCCCEEEECTTTSEEEEE---ETTEEEEEETTTTEECSSCCCBHH
T ss_pred CCeEeeeeecCCCCCCccEEEEECCCCEEEEE---eCCEEEEEcCccccccCCCcEEHh
Confidence 1221 00 0125555667788887 488889987665544444444443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=90.13 E-value=0.61 Score=33.12 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=43.4
Q ss_pred CCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCe--EEEEeeC-----CEEEEEECCCCcEEE
Q 031361 71 PDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGA--LLLGHEK-----TSVFFVDAKSGGMIC 137 (161)
Q Consensus 71 ~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~--VyvGs~d-----~~lyalDa~TG~~~W 137 (161)
++.+++..+ |.||.+|..+|+.++. +-.......|..+-||. +|+...+ +.+|.+++.+|+...
T Consensus 12 G~~v~f~~~-~dl~~~d~~~g~~~~L--t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 12 GDRIIFVCC-DDLWEHDLKSGSTRKI--VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp TTEEEEEET-TEEEEEETTTCCEEEE--ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeC-CcEEEEECCCCCEEEE--ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 444444444 4899999999988544 33444678899886664 4454433 359999999998764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.06 E-value=3.4 Score=29.86 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=9.7
Q ss_pred CCEEEEEecCCeEEEEe
Q 031361 30 GDLALVATLNGTVHLVD 46 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd 46 (161)
++.+|++...+.+..++
T Consensus 67 ~g~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 67 AGTVYVTDFNNRVVTLA 83 (260)
T ss_dssp TCCEEEEETTTEEEEEC
T ss_pred CCCEEEeeeeeceeeee
Confidence 45566666666554444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.21 E-value=6.6 Score=30.16 Aligned_cols=108 Identities=6% Similarity=-0.061 Sum_probs=61.9
Q ss_pred EEEEecCC--eEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEec-CCC-----CEEEEEECCCCCe-eccccC--c
Q 031361 33 ALVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDV-GED-----WKLYFHRKGIGKM-KKPSID--V 100 (161)
Q Consensus 33 V~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~-~dd-----g~Lyald~~tG~~-~~w~~~--~ 100 (161)
++.+..|| +||.++...+++++.-+.+..+... ...+++ +|+.. .++ .+||.++...+.. +...-+ .
T Consensus 335 ~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (470)
T d2bgra1 335 KIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNP 413 (470)
T ss_dssp EEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTST
T ss_pred EEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccC
Confidence 45666776 5788888777777654433344443 333443 44322 222 2699998776543 222211 1
Q ss_pred ccceecceeEeeCCeEEEEee----CCEEEEEECCCCcEEEEecC
Q 031361 101 GEFMRRMPHVWDDGALLLGHE----KTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~VyvGs~----d~~lyalDa~TG~~~W~~~~ 141 (161)
++.=..++.++.||.-++-++ .-....++..+|+.+.....
T Consensus 414 ~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 121223566777787555333 33578889999999988764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=84.97 E-value=1.8 Score=32.86 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=42.7
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEee-CC-CeEEecCCCCEEEEEEC-CCCCe
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVGEDWKLYFHRK-GIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~-~~~V~~~ddg~Lyald~-~tG~~ 93 (161)
.+|.+|++. ..|.|+.+|+++|+++=+++...+-.++.++. |+ ++||-..+.|++|.++. ..|+.
T Consensus 235 ~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~ 303 (314)
T d1pjxa_ 235 EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK 303 (314)
T ss_dssp TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred cCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence 467788876 46789999998888765566554433333443 23 47777666778888874 45544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.63 E-value=4.3 Score=29.28 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=8.5
Q ss_pred CCeEEEEe-eCCEEEEEEC
Q 031361 113 DGALLLGH-EKTSVFFVDA 130 (161)
Q Consensus 113 dg~VyvGs-~d~~lyalDa 130 (161)
++.+|+.. .+..++.++.
T Consensus 108 ~g~i~v~d~~~~~~~~~~~ 126 (260)
T d1rwia_ 108 QGAVYVADRGNNRVVKLAA 126 (260)
T ss_dssp TCCEEEEEGGGTEEEEECT
T ss_pred cceeEeecccccccccccc
Confidence 45565543 3334555553
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